Citrus Sinensis ID: 024989

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Secondary Structure (PSIPRED)
cccccEEEEEccccccccccccccEEEEEccccccEEEEEcccccccccccHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccEEEEEEccEEEEcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccHHHHHHHHHHccccccEEEEccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccccEEEccccEEEEcccHEEEEEEccccccccccccHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHccEEEEEcccEEEEcccHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHccccccHHEEEcccEEcccHHHHHHHHHHcccccccEEEEEcccccEEEccccccc
Coil and Loop (DISEMBL)
MVEPEMVKVLGrsafhdtaltssgdlsylggeWRREVAfagfevpiqmdvsAEKMIFGVAGIDPQRRAELIKVLDIdlswrmhkvsdgQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIfdglenwpsHIVYVAHGklqlampmdkVKEASKLSLMRTVESWLRKERDEERKRRRErkasglpefdkqihgsrvtgdpAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Flexible Loop (DISEMBL)
MVEPEMVKVLGrsafhdtaltssgdlsylGGEWRREVAFAGFEVPIQMDVSAEKMIFGvagidpqrRAELIKVldidlswrmhkvsdgqrrRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAsklslmrtveswlrkerdeerkrrrerkasglpefdkqihgsrvtGDPAQAAVRVMNNGWAAGRlhstvageenfvlstnrvlr
Low Complexity Region (SEG)
MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITvdldvlaradllrflrKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLrkerdeerkrrrerkASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Disordered region (IsUnstruct)
*********LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM*********************************************************AVRVMNNGWAAGRLHSTVAGEENFVL*******
Disordered Region (DISOPRED)
*VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRK************************HGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRV**
Disordered Region (DISEMBL)
MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWL******************LPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Disordered Region (DISPRO)
*VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEE*KRRR***ASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q9LZ98	328	ABC transporter I family	yes	no	0.984	0.777	0.869	1e-120
Q9XF19	282	ABC transporter I family	no	no	0.714	0.656	0.647	1e-67
Q3EDJ0	290	ABC transporter I family	no	no	0.718	0.641	0.643	2e-66
Q7Z991	280	Uncharacterized ABC trans	yes	no	0.725	0.671	0.456	2e-43
P43569	289	CCR4-associated factor 16	yes	no	0.525	0.470	0.472	7e-32
Q38UU0	291	Energy-coupling factor tr	yes	no	0.471	0.419	0.325	6e-10
Q839D4	289	Energy-coupling factor tr	yes	no	0.471	0.422	0.277	3e-08
Q8DWR4	280	Energy-coupling factor tr	N/A	no	0.478	0.442	0.317	4e-08
Q8E2L3	280	Energy-coupling factor tr	N/A	no	0.478	0.442	0.317	4e-08
Q3JYF5	280	Energy-coupling factor tr	N/A	no	0.478	0.442	0.317	4e-08

>sp|Q9LZ98|AB20I_ARATH ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/260 (86%), Positives = 245/260 (94%), Gaps = 5/260 (1%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEP MV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQMD+SAEKMIFGVA
Sbjct: 73  MVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVA 132

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRR ELIKVLDID+SWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 133 GIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 192

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLL+FLRKECEERGATIIYATHIFDGLE+WP+HIVYVA+GKLQLA+PM+KVKE SK SL
Sbjct: 193 ADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLALPMEKVKETSKKSL 252

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDEERKRR+ERKA+GLPEF+ +   SRVTGDPA    R++NNGWAAGRL
Sbjct: 253 MRTVESWLRKERDEERKRRKERKANGLPEFETRTEESRVTGDPA----RMLNNGWAAGRL 308

Query: 241 HSTVA-GEENFVLSTNRVLR 259
           HSTVA GE+NFVLS+NRVLR
Sbjct: 309 HSTVAGGEDNFVLSSNRVLR 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XF19|AB21I_ARATH ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 149/187 (79%), Gaps = 2/187 (1%)

Query: 5   EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64
            +V+VL RSAFHDT L  SGDLSYLGG W +    AG ++P+Q D SAE MIFGV GIDP
Sbjct: 69  NVVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGVEGIDP 127

Query: 65  QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124
            RR +LI +LDI+L WRMHKVSDGQRRRVQICMGLL PFKVLLLDE+TVDLDV+AR DLL
Sbjct: 128 FRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLL 187

Query: 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-ASKLSLMRT 183
            F ++ECE+RGATI+YATHIFDGLE W SH+ Y+  G+L+L+  +D++K+  +  +L+  
Sbjct: 188 EFFKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSV 247

Query: 184 VESWLRK 190
           VE+WLR 
Sbjct: 248 VEAWLRS 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDJ0|AB19I_ARATH ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 145/188 (77%), Gaps = 2/188 (1%)

Query: 5   EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64
            +V+VL RSAFHDT L  SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV G DP
Sbjct: 70  NVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVEGTDP 128

Query: 65  QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124
            RR +LI +LDI+L WRMHKVSDGQ+RRVQICMGLL PFKVLLLDE+TVDLDV+AR DLL
Sbjct: 129 VRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLL 188

Query: 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-ASKLSLMRT 183
            F ++EC++RGATI+YATHIFDGLE W +H+ Y+  G+L     M  ++E  +  +L+  
Sbjct: 189 EFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSV 248

Query: 184 VESWLRKE 191
           VESWLR E
Sbjct: 249 VESWLRSE 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Z991|YE31_SCHPO Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G4.01 PE=4 SV=2

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 128/206 (62%), Gaps = 18/206 (8%)

Query: 7   VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PQ 65
           + V G+  F +    SS    YLG EW            I  D+S  ++I  V G    +
Sbjct: 61  ISVGGKDPFRE----SSSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGGDKFAE 109

Query: 66  RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125
           RR  LI +LDIDL WRMH VSDG+RRRVQ+CMGLL+PF+VLLLDE+TVDLDVLARADLL 
Sbjct: 110 RRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLN 169

Query: 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV------KEASKLS 179
           FL++E E R ATI+YATHIFDGL  WP+H+V+++ G++    P+ K             +
Sbjct: 170 FLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSA 229

Query: 180 LMRTVESWLRKERDEERKRRRERKAS 205
           L+ T   WL++++     R  E++++
Sbjct: 230 LLETCLEWLKEDKKNRGTREEEKRST 255

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P43569|CAF16_YEAST CCR4-associated factor 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF16 PE=1 SV=1

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 97/144 (67%), Gaps = 8/144 (5%)

Query: 21  TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE-LIKVLDIDLS 79
           T+    +YLG EW            I  D+   +++  +     + R E L+++LDID+ 
Sbjct: 91  TNYQTTTYLGTEWCHMSI-------INRDIGVLELLKSIGFDHFRERGERLVRILDIDVR 143

Query: 80  WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139
           WRMH++SDGQ+RRVQ+ MGLLKP++VLLLDE+TVDLDV+ARA LL FL+ E E R  +++
Sbjct: 144 WRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARARLLEFLKWETETRRCSVV 203

Query: 140 YATHIFDGLENWPSHIVYVAHGKL 163
           YATHIFDGL  WP+ + ++  GK+
Sbjct: 204 YATHIFDGLAKWPNQVYHMKSGKI 227

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q38UU0|ECFA1_LACSS Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=ecfA1 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRA----ELIKVLDIDLSWRMHKVSDGQRRRVQICM 97
           FE  +Q D++     FGV   +   RA    EL+ + +  L      +S GQ RRV I  
Sbjct: 99  FEATVQKDIAFGPQNFGVPEAEALERAKAMVELVGLPEAVLEQSPFDLSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    +VL+LDE T  LD + R +++    K   E+G TI+  TH  D + N+  H+V 
Sbjct: 159 VLAMQPEVLILDEPTAGLDPVGRREMMGLFEKLHREQGMTIVMVTHQMDDVANYADHVVV 218

Query: 158 VAHGKL 163
           + +G +
Sbjct: 219 LENGGI 224

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Lactobacillus sakei subsp. sakei (strain 23K) (taxid: 314315)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q839D4|ECFA2_ENTFA Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=ecfA2 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 4/126 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRAE-LIKVLDIDLSWRMH---KVSDGQRRRVQICM 97
           FE  ++ D++     FGV+  + ++ A+ ++ ++ +D  +  H   ++S GQ RRV I  
Sbjct: 99  FEETVERDIAFGPKNFGVSDEEAKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    +VL+LDE T  LD   R +++    +  +E   TI+  TH+ D + N+  H++ 
Sbjct: 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIV 218

Query: 158 VAHGKL 163
           +  G++
Sbjct: 219 LEKGQI 224

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Enterococcus faecalis (strain ATCC 700802 / V583) (taxid: 226185)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q8DWR4|ECFA1_STRA5 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN=ecfA1 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRAE----LIKVLDIDLSWRMHKVSDGQRRRVQICM 97
           FE  +  DV+     FG++ I+ +R AE    L+ + +        ++S GQ RRV I  
Sbjct: 99  FEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFELSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    KVL+LDE T  LD   R +L+  L K   ++G TI+  TH+ D + ++  ++  
Sbjct: 159 ILAMEPKVLVLDEPTAGLDPKGRKELMT-LFKNLHKKGMTIVLVTHLMDDVADYADYVYV 217

Query: 158 VAHGKLQLA 166
           +  GK+ L+
Sbjct: 218 LEAGKVTLS 226

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Streptococcus agalactiae serotype V (taxid: 216466)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q8E2L3|ECFA1_STRA3 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=ecfA1 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRAE----LIKVLDIDLSWRMHKVSDGQRRRVQICM 97
           FE  +  DV+     FG++ I+ +R AE    L+ + +        ++S GQ RRV I  
Sbjct: 99  FEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFELSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    KVL+LDE T  LD   R +L+  L K   ++G TI+  TH+ D + ++  ++  
Sbjct: 159 ILAMEPKVLVLDEPTAGLDPKGRKELMT-LFKNLHKKGMTIVLVTHLMDDVADYADYVYV 217

Query: 158 VAHGKLQLA 166
           +  GK+ L+
Sbjct: 218 LEAGKVTLS 226

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Streptococcus agalactiae serotype III (taxid: 216495)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q3JYF5|ECFA1_STRA1 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) GN=ecfA1 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRAE----LIKVLDIDLSWRMHKVSDGQRRRVQICM 97
           FE  +  DV+     FG++ I+ +R AE    L+ + +        ++S GQ RRV I  
Sbjct: 99  FEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFELSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    KVL+LDE T  LD   R +L+  L K   ++G TI+  TH+ D + ++  ++  
Sbjct: 159 ILAMEPKVLVLDEPTAGLDPKGRKELMT-LFKNLHKKGMTIVLVTHLMDDVADYADYVYV 217

Query: 158 VAHGKLQLA 166
           +  GK+ L+
Sbjct: 218 LEAGKVTLS 226

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Streptococcus agalactiae serotype Ia (taxid: 355315)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
224087421	325	ABC transporter family protein [Populus	1.0	0.796	0.891	1e-135
225450516	329	PREDICTED: ABC transporter I family memb	1.0	0.787	0.895	1e-135
147807582	329	hypothetical protein VITISV_040623 [Viti	1.0	0.787	0.895	1e-135
356535000	333	PREDICTED: ABC transporter I family memb	1.0	0.777	0.884	1e-133
255638644	333	unknown [Glycine max]	1.0	0.777	0.884	1e-133
224072397	326	ABC transporter family protein [Populus	1.0	0.794	0.884	1e-132
359487564	343	PREDICTED: ABC transporter I family memb	1.0	0.755	0.849	1e-132
357441913	333	ABC transporter family protein [Medicago	1.0	0.777	0.865	1e-130
356575323	333	PREDICTED: LOW QUALITY PROTEIN: ABC tran	1.0	0.777	0.857	1e-129
297810323	328	non-intrinsic abc protein 9 [Arabidopsis	0.984	0.777	0.869	1e-128

>gi|224087421|ref|XP_002308160.1| ABC transporter family protein [Populus trichocarpa] gi|222854136|gb|EEE91683.1| ABC transporter family protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/259 (89%), Positives = 247/259 (95%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEP+MV+VLGRSAFHDTALTSSG LSYLGGEWRREVAFAGFEVPIQMD+SAEKMIFGVA
Sbjct: 67  MVEPQMVRVLGRSAFHDTALTSSGHLSYLGGEWRREVAFAGFEVPIQMDISAEKMIFGVA 126

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL+PFKVLLLDEITVDLDVLAR
Sbjct: 127 GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEITVDLDVLAR 186

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLL+FLRKECEERGATIIYATHIFDGLE WP+HI+YVAHGKLQ A+PM K+KE S LSL
Sbjct: 187 ADLLKFLRKECEERGATIIYATHIFDGLEEWPTHILYVAHGKLQFALPMAKIKETSNLSL 246

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDEERKRR+ERKA GLPE++KQ+ GSRVTGDPA+   RVMNNGWAAGRL
Sbjct: 247 MRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVMNNGWAAGRL 306

Query: 241 HSTVAGEENFVLSTNRVLR 259
           HST+AGEENF LS+NRVLR
Sbjct: 307 HSTIAGEENFFLSSNRVLR 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450516|ref|XP_002281168.1| PREDICTED: ABC transporter I family member 20 isoform 1 [Vitis vinifera] gi|296089817|emb|CBI39636.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/259 (89%), Positives = 247/259 (95%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEP MV+VLGRSAFHDTALTSSGDL YLGGEWRR+VAFAGFEVPIQMDVSAEKMIFGV+
Sbjct: 70  MVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVSAEKMIFGVS 129

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 130 GIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 189

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLL+FLRKECEERGATIIYATHIFDGLENWPSH+VYVAHGKLQLAMPM+KV+E S LSL
Sbjct: 190 ADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVYVAHGKLQLAMPMEKVREMSNLSL 249

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDE RKRR+ERKA GLPEF+ Q+ GSRV GDPA+AAVR +NNGWAAGRL
Sbjct: 250 MRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGSRVAGDPARAAVRALNNGWAAGRL 309

Query: 241 HSTVAGEENFVLSTNRVLR 259
           HST+AGEENF LS+N VLR
Sbjct: 310 HSTIAGEENFFLSSNSVLR 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807582|emb|CAN66319.1| hypothetical protein VITISV_040623 [Vitis vinifera]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/259 (89%), Positives = 247/259 (95%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEP MV+VLGRSAFHDTALTSSGDL YLGGEWRR+VAFAGFEVPIQMDVSAEKMIFGV+
Sbjct: 70  MVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVSAEKMIFGVS 129

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 130 GIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 189

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLL+FLRKECEERGATIIYATHIFDGLENWPSH+VYVAHGKLQLAMPM+KV+E S LSL
Sbjct: 190 ADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVYVAHGKLQLAMPMEKVREMSNLSL 249

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDE RKRR+ERKA GLPEF+ Q+ GSRV GDPA+AAVR +NNGWAAGRL
Sbjct: 250 MRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGSRVAGDPARAAVRALNNGWAAGRL 309

Query: 241 HSTVAGEENFVLSTNRVLR 259
           HST+AGEENF LS+N VLR
Sbjct: 310 HSTIAGEENFFLSSNSVLR 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535000|ref|XP_003536037.1| PREDICTED: ABC transporter I family member 20-like [Glycine max]

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/259 (88%), Positives = 250/259 (96%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           +VEP+MV+VLGRSAFHDT L SSGDL YLGGEWRR+VAFAGFEVPIQMD+SA+KMIFGV 
Sbjct: 74  LVEPDMVRVLGRSAFHDTTLISSGDLCYLGGEWRRDVAFAGFEVPIQMDISAQKMIFGVP 133

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 134 GIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 193

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLLRFLRKEC+ERGATIIYATHIFDGLE+WP++IVYVAHGKLQLAMPMDKVKE SKLSL
Sbjct: 194 ADLLRFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPMDKVKEISKLSL 253

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDE+RK+R+ERKA+GLPEF K++  SRVTGDPA+AAVRV+NNGWAAGRL
Sbjct: 254 MRTVESWLRKERDEDRKKRKERKAAGLPEFGKRVEESRVTGDPARAAVRVINNGWAAGRL 313

Query: 241 HSTVAGEENFVLSTNRVLR 259
            STVAGEENF+LS+NRVLR
Sbjct: 314 TSTVAGEENFLLSSNRVLR 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638644|gb|ACU19627.1| unknown [Glycine max]

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/259 (88%), Positives = 250/259 (96%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           +VEP+MV+VLGRSAFHDT L SSGDL YLGGEWRR+VAFAGFEVPIQMD+SA+KMIFGV 
Sbjct: 74  LVEPDMVRVLGRSAFHDTTLISSGDLCYLGGEWRRDVAFAGFEVPIQMDISAQKMIFGVP 133

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 134 GIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 193

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLLRFLRKEC+ERGATIIYATHIFDGLE+WP++IVYVAHGKLQLAMPMDKVKE SKLSL
Sbjct: 194 ADLLRFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPMDKVKEISKLSL 253

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDE+RK+R+ERKA+GLPEF K++  SRVTGDPA+AAVRV+NNGWAAGRL
Sbjct: 254 MRTVESWLRKERDEDRKKRKERKAAGLPEFGKRVEESRVTGDPARAAVRVINNGWAAGRL 313

Query: 241 HSTVAGEENFVLSTNRVLR 259
            STVAGEENF+LS+NRVLR
Sbjct: 314 TSTVAGEENFLLSSNRVLR 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072397|ref|XP_002303716.1| ABC transporter family protein [Populus trichocarpa] gi|222841148|gb|EEE78695.1| ABC transporter family protein [Populus trichocarpa]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/260 (88%), Positives = 245/260 (94%), Gaps = 1/260 (0%)

Query: 1   MVEPEMVKVLGRSAFHDTA-LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV 59
           MVEP+MV+VLGRSAFHDTA LTSSG LSYLGGEWRREVAFAGFEVPIQMD+SAEKMIFGV
Sbjct: 67  MVEPQMVRVLGRSAFHDTAALTSSGHLSYLGGEWRREVAFAGFEVPIQMDISAEKMIFGV 126

Query: 60  AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 119
           AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL+PFKVLLLDEI VDLDVLA
Sbjct: 127 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEIMVDLDVLA 186

Query: 120 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
           RADLL+FLRKECEER ATIIYATHIFDGLE WP+HI+YVAHGKLQ AMPM K+KE S LS
Sbjct: 187 RADLLKFLRKECEERSATIIYATHIFDGLEEWPTHILYVAHGKLQFAMPMAKIKETSNLS 246

Query: 180 LMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGR 239
           LMRTVESWLRKERDEERKRR+ERKA GLPE++KQ+ GSRVTGDPA+   RVMNNGWAAGR
Sbjct: 247 LMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVMNNGWAAGR 306

Query: 240 LHSTVAGEENFVLSTNRVLR 259
           LHST+AGEENF LS+NRVLR
Sbjct: 307 LHSTIAGEENFFLSSNRVLR 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487564|ref|XP_003633613.1| PREDICTED: ABC transporter I family member 20 isoform 2 [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/273 (84%), Positives = 247/273 (90%), Gaps = 14/273 (5%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEP MV+VLGRSAFHDTALTSSGDL YLGGEWRR+VAFAGFEVPIQMDVSAEKMIFGV+
Sbjct: 70  MVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVSAEKMIFGVS 129

Query: 61  GIDPQRRAELIKV--------------LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVL 106
           GIDPQRRAELIKV              LDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVL
Sbjct: 130 GIDPQRRAELIKVRCESETPKLQSCNVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVL 189

Query: 107 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 166
           LLDEITVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLENWPSH+VYVAHGKLQLA
Sbjct: 190 LLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVYVAHGKLQLA 249

Query: 167 MPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQA 226
           MPM+KV+E S LSLMRTVESWLRKERDE RKRR+ERKA GLPEF+ Q+ GSRV GDPA+A
Sbjct: 250 MPMEKVREMSNLSLMRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGSRVAGDPARA 309

Query: 227 AVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR 259
           AVR +NNGWAAGRLHST+AGEENF LS+N VLR
Sbjct: 310 AVRALNNGWAAGRLHSTIAGEENFFLSSNSVLR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441913|ref|XP_003591234.1| ABC transporter family protein [Medicago truncatula] gi|355480282|gb|AES61485.1| ABC transporter family protein [Medicago truncatula]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/260 (86%), Positives = 250/260 (96%), Gaps = 1/260 (0%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEPEMV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQMD+SAEKMIFGVA
Sbjct: 73  MVEPEMVRVLGRSAFHDTTLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVA 132

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDP RRAELIKVLDI+LSWR+HKVSDGQRRRVQICMGLLKPF+VLLLDEITVDLDVLAR
Sbjct: 133 GIDPARRAELIKVLDINLSWRLHKVSDGQRRRVQICMGLLKPFQVLLLDEITVDLDVLAR 192

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLL+FLRKEC+ERGATIIYATHIFDGLE+WP++IVYVAHG+L+LAMP++KVKE SKLSL
Sbjct: 193 ADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLELAMPIEKVKETSKLSL 252

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVT-GDPAQAAVRVMNNGWAAGR 239
           MRTVE WLRKERDE+R++R+ERKA+GLPEFDKQ+ GSRV  GDPA+A VRV NNGWAAGR
Sbjct: 253 MRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVVGGDPARAPVRVTNNGWAAGR 312

Query: 240 LHSTVAGEENFVLSTNRVLR 259
           LHST+AGEENF+LS+NRVLR
Sbjct: 313 LHSTIAGEENFLLSSNRVLR 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575323|ref|XP_003555791.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter I family member 20-like [Glycine max]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/259 (85%), Positives = 246/259 (94%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           +VEP+MV+VLGR AFHDT L SSG L YLGGEWR++VAFAGFEVPIQMD+SA+KMIFGV 
Sbjct: 74  LVEPDMVRVLGRPAFHDTTLISSGHLCYLGGEWRQDVAFAGFEVPIQMDISAQKMIFGVP 133

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRR ELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 134 GIDPQRRDELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 193

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLLRFLRKEC+E GATIIYATHIFDGLE+WP++IVYVAHGKLQLAMPMDKV E SKLSL
Sbjct: 194 ADLLRFLRKECDEMGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPMDKVXEISKLSL 253

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDE+RK+R+ERKA+GLPEF KQ+ GS VTGDPA+AAV+V+NNGWAAGRL
Sbjct: 254 MRTVESWLRKERDEDRKKRKERKAAGLPEFGKQVVGSHVTGDPARAAVQVINNGWAAGRL 313

Query: 241 HSTVAGEENFVLSTNRVLR 259
           +ST+AGEENF+LS+NRVLR
Sbjct: 314 NSTIAGEENFLLSSNRVLR 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810323|ref|XP_002873045.1| non-intrinsic abc protein 9 [Arabidopsis lyrata subsp. lyrata] gi|297318882|gb|EFH49304.1| non-intrinsic abc protein 9 [Arabidopsis lyrata subsp. lyrata]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/260 (86%), Positives = 244/260 (93%), Gaps = 5/260 (1%)

Query: 1   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
           MVEP MV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQMD+SAEKMIFGVA
Sbjct: 73  MVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVA 132

Query: 61  GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           GIDPQRR ELIKVLDID+SWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR
Sbjct: 133 GIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 192

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSL 180
           ADLL+FLRKECEERGATIIYATHIFDGLE+WP++IVYVAHGKLQLA+PM+KVKE SK SL
Sbjct: 193 ADLLKFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLALPMEKVKETSKKSL 252

Query: 181 MRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRL 240
           MRTVESWLRKERDEERKRR ERKA+GLPEF+ +   SRVTGDPA    R++NNGWAAGRL
Sbjct: 253 MRTVESWLRKERDEERKRRTERKANGLPEFETRTEESRVTGDPA----RMLNNGWAAGRL 308

Query: 241 HSTVA-GEENFVLSTNRVLR 259
           HSTVA GE+NFVLS+NRVLR
Sbjct: 309 HSTVAGGEDNFVLSSNRVLR 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2167644	282	ABCI21 "ATP-binding cassette A	0.702	0.645	0.592	1.6e-54
TAIR|locus:505006098	290	ABCI19 "ATP-binding cassette I	0.702	0.627	0.586	6.3e-53
POMBASE|SPAC20G4.01	280	caf16 "CCR4-Not complex subuni	0.660	0.610	0.412	3e-30
ASPGD|ASPL0000006229	274	AN6512 [Emericella nidulans (t	0.548	0.518	0.426	2.2e-27
UNIPROTKB|G4N1E4	290	MGG_09520 "CCR4-Not complex su	0.567	0.506	0.412	1.4e-25
SGD|S000001866	289	CAF16 "Component of the CCR4-N	0.555	0.498	0.396	3.3e-24
CGD|CAL0004927	320	CAF16 [Candida albicans (taxid	0.536	0.434	0.395	3.8e-23
UNIPROTKB|Q59QD0	320	CAF16 "Potential CCR4-NOT comp	0.536	0.434	0.395	3.8e-23
GENEDB_PFALCIPARUM|PF14_0321	257	PF14_0321 "ABC transporter, pu	0.571	0.575	0.260	1.4e-14
TIGR_CMR|BA_3653	297	BA_3653 "ABC transporter, ATP-	0.420	0.367	0.297	3.1e-06

TAIR|locus:2167644 ABCI21 "ATP-binding cassette A21" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 109/184 (59%), Positives = 135/184 (73%)

Query:     6 MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65
             +V+VL RSAFHDT L  SGDLSYLGG W +    AG ++P+Q D SAE MIFGV GIDP 
Sbjct:    70 VVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGVEGIDPF 128

Query:    66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 125
             RR +LI +LDI+L WRMHKVSDGQRRRVQICMGLL PFKVLLLDE+T             
Sbjct:   129 RREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLE 188

Query:   126 XXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA-SKLSLMRTV 184
                +ECE+RGATI+YATHIFDGLE W SH+ Y+  G+L+L+  +D++K+  +  +L+  V
Sbjct:   189 FFKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVV 248

Query:   185 ESWL 188
             E+WL
Sbjct:   249 EAWL 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:505006098 ABCI19 "ATP-binding cassette I19" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 108/184 (58%), Positives = 130/184 (70%)

Query:     6 MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65
             +V+VL RSAFHDT L  SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV G DP 
Sbjct:    71 VVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVEGTDPV 129

Query:    66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 125
             RR +LI +LDI+L WRMHKVSDGQ+RRVQICMGLL PFKVLLLDE+T             
Sbjct:   130 RREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLE 189

Query:   126 XXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA-SKLSLMRTV 184
                +EC++RGATI+YATHIFDGLE W +H+ Y+  G+L     M  ++E  +  +L+  V
Sbjct:   190 FFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVV 249

Query:   185 ESWL 188
             ESWL
Sbjct:   250 ESWL 253

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

POMBASE|SPAC20G4.01 caf16 "CCR4-Not complex subunit Caf16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 78/189 (41%), Positives = 103/189 (54%)

Query:     7 VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PQ 65
             + V G+  F +    SS    YLG EW            I  D+S  ++I  V G    +
Sbjct:    61 ISVGGKDPFRE----SSSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGGDKFAE 109

Query:    66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 125
             RR  LI +LDIDL WRMH VSDG+RRRVQ+CMGLL+PF+VLLLDE+T             
Sbjct:   110 RRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLN 169

Query:   126 XXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV------KEASKLS 179
                +E E R ATI+YATHIFDGL  WP+H+V+++ G++    P+ K             +
Sbjct:   170 FLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSA 229

Query:   180 LMRTVESWL 188
             L+ T   WL
Sbjct:   230 LLETCLEWL 238

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IC

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IC

GO:0006402 "mRNA catabolic process" evidence=IC

GO:0006810 "transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0030015 "CCR4-NOT core complex" evidence=NAS

ASPGD|ASPL0000006229 AN6512 [Emericella nidulans (taxid:162425)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/150 (42%), Positives = 91/150 (60%)

Query:    26 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDIDLSWRMHK 84
             ++YLG EW            ++ D+    ++  V G   P+RR EL+++LDIDL WRMH 
Sbjct:    79 VTYLGVEWVLNSI-------VRTDIDVPTLLASVGGNAYPERRDELVEILDIDLRWRMHA 131

Query:    85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
             VSDG+RRRVQ+ MGLL+P++VLLLDEIT                +E E R  TI+YATHI
Sbjct:   132 VSDGERRRVQLAMGLLRPWQVLLLDEITVDLDLLSRSNFLSFLKRETETRPCTIVYATHI 191

Query:   145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174
              D L +WP+H+V++  G ++    ++K KE
Sbjct:   192 LDNLAHWPTHLVHMHLGNVRQWGAIEKFKE 221

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|G4N1E4 MGG_09520 "CCR4-Not complex subunit Caf16" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 64/155 (41%), Positives = 89/155 (57%)

Query:    26 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDIDLSWRMHK 84
             ++YLG EW            ++ D+   +++  V G   P RR EL++VLDID +WRMH 
Sbjct:    85 VTYLGLEWVLNPI-------VRTDIGVAELLRSVGGDAYPARRDELVEVLDIDTAWRMHA 137

Query:    85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
             VSDG+RRRVQ+ MGL++P+ VLLLDEIT                +E E R AT++YATHI
Sbjct:   138 VSDGERRRVQLAMGLVRPWTVLLLDEITVDLDVLSRSGFLDWLKRETESRDATVVYATHI 197

Query:   145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
              D L  WP+H+V++  G ++   P     EA   S
Sbjct:   198 LDNLHAWPTHLVHMHLGTVKEWGPAADFLEAQGAS 232

GO:0008150 "biological_process" evidence=ND

SGD|S000001866 CAF16 "Component of the CCR4-NOT transcriptional complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/154 (39%), Positives = 90/154 (58%)

Query:    27 SYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR-RAE-LIKVLDIDLSWRMHK 84
             +YLG EW          + I  D+   +++  + G D  R R E L+++LDID+ WRMH+
Sbjct:    97 TYLGTEW------CHMSI-INRDIGVLELLKSI-GFDHFRERGERLVRILDIDVRWRMHR 148

Query:    85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
             +SDGQ+RRVQ+ MGLLKP++VLLLDE+T                 E E R  +++YATHI
Sbjct:   149 LSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARARLLEFLKWETETRRCSVVYATHI 208

Query:   145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178
             FDGL  WP+ + ++  GK+   +   K  E S++
Sbjct:   209 FDGLAKWPNQVYHMKSGKIVDNLDYQKDVEFSEV 242

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP;IPI

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

CGD|CAL0004927 CAF16 [Candida albicans (taxid:5476)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 59/149 (39%), Positives = 84/149 (56%)

Query:    16 HDTALTSSGD-LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-RRAELIKV 73
             H+ A +   + ++YLG EW            I+ D+    ++  + G   Q RR  LI +
Sbjct:    85 HEQANSDINNYITYLGTEWATNSI-------IKRDIPVNLLLASIGGETYQDRRNLLIDI 137

Query:    74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEE 133
             LDID SW M  +SDG+RRRVQI MGL+KP+K+LLLDE+T                +EC+E
Sbjct:   138 LDIDPSWSMLNISDGERRRVQIAMGLVKPWKLLLLDEVTIDLDVVVRSKLLNYLKQECQE 197

Query:   134 RGATIIYATHIFDGL-ENWPSHIVYVAHG 161
             R  T++YATHIFDGL   W   ++++  G
Sbjct:   198 RNCTVVYATHIFDGLGHKWCDRVIHIDAG 226

GO:0005524 "ATP binding" evidence=ISS

GO:0030014 "CCR4-NOT complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q59QD0 CAF16 "Potential CCR4-NOT complex associated factor Caf16p" [Candida albicans SC5314 (taxid:237561)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 59/149 (39%), Positives = 84/149 (56%)

Query:    16 HDTALTSSGD-LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-RRAELIKV 73
             H+ A +   + ++YLG EW            I+ D+    ++  + G   Q RR  LI +
Sbjct:    85 HEQANSDINNYITYLGTEWATNSI-------IKRDIPVNLLLASIGGETYQDRRNLLIDI 137

Query:    74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEE 133
             LDID SW M  +SDG+RRRVQI MGL+KP+K+LLLDE+T                +EC+E
Sbjct:   138 LDIDPSWSMLNISDGERRRVQIAMGLVKPWKLLLLDEVTIDLDVVVRSKLLNYLKQECQE 197

Query:   134 RGATIIYATHIFDGL-ENWPSHIVYVAHG 161
             R  T++YATHIFDGL   W   ++++  G
Sbjct:   198 RNCTVVYATHIFDGLGHKWCDRVIHIDAG 226

GO:0005524 "ATP binding" evidence=ISS

GENEDB_PFALCIPARUM|PF14_0321 PF14_0321 "ABC transporter, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 42/161 (26%), Positives = 80/161 (49%)

Query:     1 MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 60
             +++   V +  + AFHDT +  S  + Y+G  W  E A         M++S +   F   
Sbjct:    60 LIKENEVLIFNKQAFHDTDI--SNKIGYVGEWWSEEYA---------MNISIKDFCFNYE 108

Query:    61 GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXX 120
                 +R   L+K+ ++D +  +  +S G+R++VQI + ++    + + DE T        
Sbjct:   109 YT--KRYKNLLKLFELDENKIISNLSKGERKKVQIMVNIIVRKDIYIFDEATESLDLVSR 166

Query:   121 XXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHG 161
                     KEC +  + +IY+THIFD ++ W +H++Y++ G
Sbjct:   167 KLLLEFLKKECIKYNSIVIYSTHIFDHMDKWSTHVLYLSEG 207

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|BA_3653 BA_3653 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 33/111 (29%), Positives = 58/111 (52%)

Query:    54 KMIFGVAGI-DPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
             K++ G+ G+ D +RR ELI+ L  D+   + K+S G +++V I    +   +VL+LDE T
Sbjct:    96 KLMQGMRGLKDTKRRDELIERLQFDVKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPT 155

Query:   113 XXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
                             +E ++RG TI+ ++HIF  +E     +  +  G+L
Sbjct:   156 SGLDPLMQQVFIDLIVEE-KQRGKTILMSSHIFTEIERTCDRVAIIKDGRL 205

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZ98	AB20I_ARATH	No assigned EC number	0.8692	0.9845	0.7774	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-42
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	1e-17
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-15
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-14
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-14
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-13
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	3e-13
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-13
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-13
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	5e-13
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	6e-13
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-11
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	5e-11
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	9e-11
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-10
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-10
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-09
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-09
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	7e-09
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	7e-09
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	7e-09
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	8e-09
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-08
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-08
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-08
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	4e-08
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	5e-08
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	5e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	9e-08
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-07
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-07
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-07
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-07
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-07
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-07
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-07
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-07
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	4e-07
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	5e-07
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	5e-07
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	6e-07
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	7e-07
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	9e-07
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-06
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-06
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-06
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-06
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-06
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-06
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-06
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-06
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-06
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	3e-06
pfam13304	256	pfam13304, AAA_21, AAA domain	3e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	4e-06
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-06
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-06
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-06
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	5e-06
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	6e-06
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	7e-06
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	8e-06
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	9e-06
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-06
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-05
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-05
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-05
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-05
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-05
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-05
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-05
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-05
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-05
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-05
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-05
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	3e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-05
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	3e-05
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	3e-05
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	4e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-05
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	4e-05
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	6e-05
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	6e-05
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	7e-05
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	1e-04
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-04
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-04
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-04
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	1e-04
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-04
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-04
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-04
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-04
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-04
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-04
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	3e-04
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-04
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	4e-04
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	4e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	4e-04
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	4e-04
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	4e-04
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	5e-04
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	5e-04
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	6e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	6e-04
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	7e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	7e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	8e-04
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	8e-04
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	8e-04
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	8e-04
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	0.001
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	0.001
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.001
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	0.001
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.001
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	0.001
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	0.001
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	0.001
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.001
pfam13175	320	pfam13175, AAA_15, AAA ATPase domain	0.001
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	0.001
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	0.001
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	0.002
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	0.002
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	0.002
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	0.002
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	0.002
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	0.002
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.002
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	0.003
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	0.003
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	0.003
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	0.003
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	0.003
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	0.003
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.004
COG4598	256	COG4598, HisP, ABC-type histidine transport system	0.004
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	0.004
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	0.004
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	0.004

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  146 bits (370), Expect = 3e-42
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 21/181 (11%)

Query: 45  PIQMDVSAEKMIFGVAGID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK 101
           P    +   K+I+ +   +  +R   L ++LD++  L W + K+S GQR R ++   LL 
Sbjct: 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH 173

Query: 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 161
           P KVL LDE TV LDV A+A++  FL++  EER AT++  THIFD +      ++ +  G
Sbjct: 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233

Query: 162 KL-----------------QLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKA 204
           +L                 + ++ + + K  S+L+L+  V         +    R E   
Sbjct: 234 QLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQLALLGDVTIE-EGLNIKNDVSREESAD 292

Query: 205 S 205
            
Sbjct: 293 I 293

Length = 325

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 63  DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL-KPFKVLLLDEITVDLDVLA 119
             +R  EL+++  ++   + ++  +S G ++R+ I + LL  P ++L+LDE T  LD  +
Sbjct: 113 AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP-ELLILDEPTSGLDPES 171

Query: 120 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
           R ++   LR+  +E G TI+ +THI +  E     ++ +  GK+      +++KE     
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231

Query: 180 LMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVT 220
            +  +E    +  +     +  +    L E  + +    V 
Sbjct: 232 GVIELEPERLELAELLEGLKLVKGEEELAEILEALLEEGVK 272

Length = 293

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQR+RV +   LL    +LLLDE T  LD  +R  LL  LR+  EE G T+I  TH  
Sbjct: 82  SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP 140

Query: 146 DGLENWPSHIVYVAHGK 162
           +  E     ++ +  GK
Sbjct: 141 ELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 34  RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRR 91
             EVAF        + +  E++         +R  E ++++ ++         +S GQ++
Sbjct: 94  EEEVAFG----LENLGLPEEEIE--------ERVEEALELVGLEGLRDRSPFTLSGGQKQ 141

Query: 92  RVQI-CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 150
           RV I  +  + P  +LLLDE T  LD   R +LL  L+K   E G TII  TH  D L  
Sbjct: 142 RVAIAGVLAMDP-DILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLE 199

Query: 151 WPSHIVYVAHGK 162
               ++ +  GK
Sbjct: 200 LADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 86  SDGQRRRVQICMGLL-KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           S G ++R+ +   LL  P ++L+LDE T  LD  +R +    LR+  +E G TI+ ++HI
Sbjct: 97  SGGMKQRLALAQALLHDP-ELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHI 154

Query: 145 FDGLENWPSHIVYVAHGKL 163
            +  E     +  + +G++
Sbjct: 155 LEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 26/69 (37%), Positives = 44/69 (63%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           ++ +++ G RRRV+I   LL    +LLLDE TV LD  +RA +   +R    ++G ++++
Sbjct: 129 KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLW 188

Query: 141 ATHIFDGLE 149
           ATH+ D +E
Sbjct: 189 ATHLVDEIE 197

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 61  GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 114
            + P    +R  EL ++LD++  L   + ++S GQR R +I   LL   ++L LDE T+ 
Sbjct: 124 DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183

Query: 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           LDV+A+ ++  FL++   ERG T++  +H    +E     ++ +  G+L 
Sbjct: 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 16/131 (12%)

Query: 36  EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV 93
           EVAF        + +  E++         +R AE ++++ ++  L      +S GQ++RV
Sbjct: 100 EVAFG----LENLGLPREEI--------EERVAEALELVGLEELLDRPPFNLSGGQKQRV 147

Query: 94  QICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152
            I   L + P ++LLLDE T  LD   R +LL  L+K  EE G TII  TH  + +  + 
Sbjct: 148 AIAGVLAMGP-EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA 206

Query: 153 SHIVYVAHGKL 163
             +V +  GK+
Sbjct: 207 DRVVVLDDGKI 217

Length = 235

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 34  RREVAFAGFEVPIQMDVSAEK------MIFGVAGIDPQRR-AELIKVLDID--LSWRMHK 84
           RR++     E  +   ++A +       + G++  + + R AEL K L +   L  R+ +
Sbjct: 74  RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE 133

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
            S G +++V I   L+    +L+LDE T  LD+  R     F+++  +  G  +I+++HI
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LKNEGRAVIFSSHI 192

Query: 145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175
              +E     ++ +  G++ L   ++ +   
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223

Length = 245

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
            R  EL   L ++  L  R+   S G R++V I   L+    VLLLDE T  LDV+A   
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           L  F+R+     G  I+++THI   +E     +V +  G++
Sbjct: 175 LREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 83  HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
           H++S GQR+RV I   L L P K+L+ DE T  LDV  +A +L  L+K  EE G T+++ 
Sbjct: 144 HELSGGQRQRVAIARALALNP-KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI 202

Query: 142 TH 143
           TH
Sbjct: 203 TH 204

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 5/117 (4%)

Query: 65  QRRAELIKVLDIDLSW---RMHKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLAR 120
           QR AEL+  + +  S+   R H++S GQR+R+ I   L  +P K+L+LDE T  LDV  +
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP-KLLILDEPTSALDVSVQ 177

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177
           A +L  L +  +ERG T ++ +H    +E+    I  + +G++    P +++     
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234

Length = 252

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 60.2 bits (147), Expect = 5e-11
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 47  QMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVL 106
           ++    E ++  +          L    +     R   +S G +R++ + + L+    VL
Sbjct: 109 EIKEEVELLLRVL---------GLTDKAN----KRARTLSGGMKRKLSLAIALIGGPSVL 155

Query: 107 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           LLDE T  LD  +R  +   + +  + R  +II  TH  D  E     I  ++ GKL+
Sbjct: 156 LLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLR 211

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H++S G R+RV I M L    K+L+ DE T  LDV  +A +L  L++   E+G  +I  T
Sbjct: 152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT 211

Query: 143 H 143
           H
Sbjct: 212 H 212

Length = 316

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 65  QRRAELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           +R  EL++ + +    R     H++S G R+RV I M L    K+L+ DE T  LDV  +
Sbjct: 131 KRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190

Query: 121 ADLLRFLRKECEERGATIIYATH 143
           A +L  L+    E G  +++ TH
Sbjct: 191 AQILDLLKDLQRELGMAVLFITH 213

Length = 539

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 55.9 bits (136), Expect = 9e-10
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 59  VAGIDPQRRAELI-------KVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLD 109
           +A + P+  A  I       ++L +  L+ R  +++S G+R+RV +   L +   +LLLD
Sbjct: 63  LASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD 122

Query: 110 EITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           E T  LD+  + +LL  LR+   ERG T++   H
Sbjct: 123 EPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 25/77 (32%), Positives = 37/77 (48%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQ++RV +   L     VLLLDE T  LD + R ++   L+    + G T++  TH  
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161

Query: 146 DGLENWPSHIVYVAHGK 162
           D        +V +  GK
Sbjct: 162 DEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 56  IFGVAG-IDPQRRAELIKVLDI-DLSWRMHKV-SDGQRRRVQICMGLLKPFKVLLLDEIT 112
           ++GV G    +R  EL+  + + + + R+ K  S G RRR++I   L+   +VL LDE T
Sbjct: 100 LYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159

Query: 113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           + LD   RA +  ++ K  EE G TI+  TH  +  E     +  + HG++
Sbjct: 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 54.4 bits (132), Expect = 7e-09
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 65  QRRAELIKVLDIDLSWRMHKV---SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 121
           +   EL++VL ++      K    S GQ++RV I   L+   K++L DE T +LD     
Sbjct: 120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179

Query: 122 DLLRFLRKECEERGATIIYATH 143
           ++L  LR+  +ERG TII  TH
Sbjct: 180 EVLELLRELNKERGKTIIMVTH 201

Length = 226

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQR+RV +   L++   +LLLDE    LD   RA++L  + + C+ER  T++  TH  
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190

Query: 146 DGLENWPSHIVYVAHGKLQLAMPMDKV 172
           +        +V++ +G++       ++
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 74  LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133
           L++ L  +++++S G+++RV +   +LKP  ++L DE T  LD   R ++L  L +  +E
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183

Query: 134 RGATIIYATH 143
            G TII  TH
Sbjct: 184 -GKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 69  ELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126
           E +++L +  L+ R + ++S G+R+RV I   L +   +LLLDE T  LD+  + ++L  
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180

Query: 127 LRKECEERGATIIYATH 143
           LR    E+G T++   H
Sbjct: 181 LRDLNREKGLTVVMVLH 197

Length = 258

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
            R  EL++++ ++  L+   H++S GQ++RV +   L +   +LLLDE    LD   R +
Sbjct: 109 ARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168

Query: 123 LLRFLRKECEERGATIIYATH 143
           L   L++   E G T IY TH
Sbjct: 169 LREELKELQRELGITTIYVTH 189

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 55  MIFGVAGIDPQRRA-ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 111
           ++ GV   + + RA EL++ + +   L+    ++S GQ++RV I   L    K++L DE 
Sbjct: 108 LLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167

Query: 112 TVDLDVLARADLLRFLRKECEERGATIIYATH 143
           T +LD     +++  LR+  +E G TI+  TH
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 66  RRAELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123
           R +  + +L + +L  R+ H +S G+++RV I   +    +VL+LDE T  LD     +L
Sbjct: 117 RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176

Query: 124 LRFLRKECEERGATIIYATHIFD 146
           + FL    E  G T+I++TH  D
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLD 199

Length = 277

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 17/116 (14%)

Query: 48  MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLL 107
           ++V+  ++  G+AG++ +   EL               S G+R+RV +   L++   VLL
Sbjct: 109 IEVALARV--GLAGLEKRLPGEL---------------SGGERQRVALARVLVRDKPVLL 151

Query: 108 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           LDE    LD   RA++L  +     E   T++  TH  +  +     +V++ +G++
Sbjct: 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDIDLSWRMH---KVSDGQRRRVQICM 97
           FE  +  DV+     FGV+  + +  A E + ++ I  S       ++S GQ RRV I  
Sbjct: 99  FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    K+L+LDE T  LD   R +L+  L K+  + G TI+  TH+ D + N+   +  
Sbjct: 159 ILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMDDVANYADFVYV 217

Query: 158 VAHGKLQLA 166
           +  GKL L+
Sbjct: 218 LEKGKLVLS 226

Length = 280

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 29/80 (36%), Positives = 45/80 (56%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           ++S GQR+RV +   L++P  +LLLDE    LD L R ++L  +++ C ER  T++  TH
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187

Query: 144 IFDGLENWPSHIVYVAHGKL 163
                    S I  V+ GK+
Sbjct: 188 HLSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H++S GQR+RV I M L     +L+ DE T  LDV  +A +L  L++   E G  I++ T
Sbjct: 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215

Query: 143 H 143
           H
Sbjct: 216 H 216

Length = 534

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKV--LDIDLSWRM-HKVSDGQRRRVQICM 97
           FE  ++ D+    M FGV+  D +++A E+I++  L  +L  R   ++S GQ RRV I  
Sbjct: 99  FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    +VL+LDE T  LD   R +++    K  +E+G T +  TH  +    +   IV 
Sbjct: 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV 218

Query: 158 VAHGKLQLA 166
           +  G + L 
Sbjct: 219 MHKGTVFLQ 227

Length = 290

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 63  DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           D     EL+ +L +D  L+    ++S G+++RV +   L    ++LLLDE    LD   R
Sbjct: 108 DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALR 167

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
             LL  L++  +     +I+ TH     E     IV +  G+LQ
Sbjct: 168 LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 63  DPQRRAELIKVLD-IDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117
             + +A + +VL+ ++L  R  K    +S G RRRV I   L+    +L++DE T  LD 
Sbjct: 104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP 163

Query: 118 LARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
             R      L +  E+R   +I +THI + +E+  + +  +  GKL 
Sbjct: 164 EERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 64  PQRRAELIKVLD-IDLSWRM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117
            +RRA + ++L+ + L         H++S GQR+RV I   L    K+L+LDE    LDV
Sbjct: 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462

Query: 118 LARADLLRFLRKECEERGATIIYATH 143
             +A +L  L+   EE G T ++ +H
Sbjct: 463 SVQAQVLNLLKDLQEELGLTYLFISH 488

Length = 539

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 83  HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
           H++S GQR+R+ I   L L P K+++ DE    LDV  +A +L  L+   EE G T ++ 
Sbjct: 108 HELSGGQRQRIGIARALALNP-KLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI 166

Query: 142 TH 143
           +H
Sbjct: 167 SH 168

Length = 268

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 52  AEKMIFGVAGIDPQRR----AELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKV 105
              + +G+    P  R      +I++L I   L     ++S G+++RV I   LL   ++
Sbjct: 93  RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152

Query: 106 LLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 165
           LL+DE    LD   + ++L +L +   E G  I+Y +H    +      +V +  G++  
Sbjct: 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212

Query: 166 AMPMDKVKEASKLSLMRTVE 185
           A P+ +V  +  L  +   +
Sbjct: 213 AGPIAEVWASPDLPWLARED 232

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 85  VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           +S GQ+RRV I  G++  +P K+L+LDE T  LD   R ++L  +++  +E   TII  +
Sbjct: 145 LSGGQKRRVAIA-GVVAMEP-KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202

Query: 143 HIFDGLENWPSHIVYVAHGKLQLAMPMDKV-KEASKL 178
           H  + +      I+ +  GK +L     +V KE   L
Sbjct: 203 HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETL 239

Length = 287

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDIDLSWRMH---KVSDGQRRRVQICM 97
           FE  I+ D+    +  GV+  + ++RA + I+++ +D S+      ++S GQ+RRV +  
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L      L+ DE T  LD     ++L        ++G TII  TH  D +  W    ++
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQGVKEILEIF-DNLNKQGKTIILVTHDLDNVLEWTKRTIF 237

Query: 158 VAHGKL 163
              GK+
Sbjct: 238 FKDGKI 243

Length = 305

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 41/197 (20%)

Query: 5   EMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----------WRREVA--FAGF 42
           EMV ++G S    + L          +SG++ + G +            RR++   F  F
Sbjct: 31  EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF 90

Query: 43  EVPIQMDV------------SAEKMIFGVAGIDPQRRAELIKVLD-IDLS----WRMHKV 85
            +  ++ V            S  + +FG+     + +A+ +  L+ + +      R   +
Sbjct: 91  NLVPRLSVLENVLLGRLGYTSTWRSLFGL--FSKEDKAQALDALERVGILDKAYQRASTL 148

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQ++RV I   L++  K++L DE    LD  +   ++  L+   +E G T+I   H  
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV 208

Query: 146 DGLENWPSHIVYVAHGK 162
           D  + +   I+ +  G+
Sbjct: 209 DLAKKYADRIIGLKAGR 225

Length = 258

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G RRR+ I   L+    VL LDE T  LD   R  +  ++R   EE G TI+  TH  
Sbjct: 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYM 184

Query: 146 DGLENWPSHIVYVAHGKL 163
           +  +     I  + HG++
Sbjct: 185 EEADKLCDRIAIIDHGRI 202

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT-II 139
               +S G++RRV I   L+K  ++L+LDE    LD++AR  LL  L +     GA  ++
Sbjct: 168 PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL 227

Query: 140 YATHIFDGLENWPSHIV------YVAHGKL 163
           + TH  + +    +H +       VA GKL
Sbjct: 228 FVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257

Length = 257

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H++S G R+RV I   L    K+LLLDE    LD L R +L   L +  EE   T++  T
Sbjct: 129 HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188

Query: 143 H 143
           H
Sbjct: 189 H 189

Length = 248

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 48.1 bits (116), Expect = 5e-07
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S GQR+R+ I   LL+   +L+LDE T  LD    A +L  LR   + +  T+I   H
Sbjct: 98  SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGK--TVIVIAH 153

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 61  GIDPQRRAELIKVLDI--DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 118
           G+   R  E++ ++D+      +  + S G ++R+ I + LL   K+L+LDE T  LD +
Sbjct: 99  GLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158

Query: 119 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178
              + LR L +   E+G T+I ++HI   ++    HI  ++ G L     ++K +   KL
Sbjct: 159 GIQE-LRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENLEKL 217

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 26/170 (15%)

Query: 22  SSGDLSYLGGE-------WRREVAFAGFEVPI---QMDVSAEKMIFG--VAGIDPQ---- 65
           +SG++  + G         +R +A   F+       M V  E + FG  + G+       
Sbjct: 56  TSGEI-LIDGRDVTDLPPEKRGIAMV-FQNYALYPHMTV-YENIAFGLKLRGVPKAEIDK 112

Query: 66  RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123
           R  E+ K+L ++  L+ +  ++S GQR+RV +   L++  KV LLDE   +LD   R  +
Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172

Query: 124 LRFLRKECEERGATIIYATHIFDGLENWPS--HIVYVAHGKL-QLAMPMD 170
              ++K  E  G T IY TH  D +E       IV +  G++ Q+  P++
Sbjct: 173 RSEIKKLHERLGTTTIYVTH--DQVEAMTLADRIVVMNDGRIQQVGTPLE 220

Length = 338

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G+R+R+ +   LL+   ++LLDE TV LD +    LL  + +  +++  T+I+ TH  
Sbjct: 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHL 157

Query: 146 DGLENWPSHIVYVAHGKLQL 165
            G+E+    I+++ +GK+ +
Sbjct: 158 TGIEHM-DKILFLENGKIIM 176

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           +R  E+ ++L I+  L  +  ++S GQR+RV +   +++  KV L+DE   +LD   R  
Sbjct: 109 ERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           +   L++  +  G T IY TH           I  +  G++Q
Sbjct: 169 MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           +S GQ +R+ +   LL P  +LLLDE T  LD      +L+ L++  +++  T++  TH 
Sbjct: 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQK--TVLVITHR 514

Query: 145 FDGLENWPSHIVYVAHGKL 163
            +   +    IV + +G+L
Sbjct: 515 LEDAADA-DRIVVLDNGRL 532

Length = 559

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           + +S GQ++RV I   L     V++LDE T  LD  AR +LL  +RK   E   TII  T
Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISIT 200

Query: 143 H 143
           H
Sbjct: 201 H 201

Length = 269

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H++S G+R+RV I M LL   ++L+ DE T  LDV  +A +L+ LR+  +E    +++ T
Sbjct: 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214

Query: 143 H 143
           H
Sbjct: 215 H 215

Length = 529

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G++ R+ +   LL+   +LLLDE T  LD+ +   L   L+   E  G T+I  +H  
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK---EYPG-TVILVSHDR 127

Query: 146 DGLENWPSHIVYVAHGK 162
             L+   + I+ +  GK
Sbjct: 128 YFLDQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQ++RV +   L++   +LLLDE    +D   + D+   LR+   E G TI+  TH  
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDL 192

Query: 146 DGLENWPSHIVY-----VAHG 161
             +  +   ++      VA G
Sbjct: 193 GLVLEYFDRVLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 25/156 (16%)

Query: 67  RAELIKVLD----IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
            A   + L      D    +  +S G RRRV +   LL+   +LLLDE T  LD+ +   
Sbjct: 132 EARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEW 191

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL--------------QLAMP 168
           L  +L++       T+I  +H    L+N  +HI+ +  GKL                 + 
Sbjct: 192 LEDYLKR----YPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLR 247

Query: 169 MDKVKEASKLSLMRTVESWLRKERDEERKRRRERKA 204
            +      +   +   + W+R+ +       + +KA
Sbjct: 248 QEAAAYEKQQKELAKEQEWIRRGK---AAASKAKKA 280

Length = 530

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H +S GQ++RV I   L+   KVL+LDE T  LD +  +++++ L +  +E G TII AT
Sbjct: 140 HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIAT 199

Query: 143 HIFD 146
           H  D
Sbjct: 200 HDID 203

Length = 283

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 13/126 (10%)

Query: 32  EWRREVAFAGFEVP--------IQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDID-LSWR 81
           E R+ V    F+ P        +  DV+   +  G++  + +RR  E +  +    L  R
Sbjct: 65  ERRQRVGLV-FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER 123

Query: 82  -MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
             H +S G+++RV I   +     VLLLDE T  LD   R  +L  LR+   E G T++ 
Sbjct: 124 PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVI 182

Query: 141 ATHIFD 146
           +TH  D
Sbjct: 183 STHDVD 188

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 57  FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 114
           +G+      +  +L+ +L I+  L      +S G+++RV I   LL   ++LL+DE    
Sbjct: 99  YGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158

Query: 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172
           LD+  + ++L +L +  +E    I+Y +H  D +      +V + +GK++ + P+++V
Sbjct: 159 LDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216

Length = 352

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           +S GQ++RV I   L    +VLL DE T  LD     ++LR +++  EE G T++  TH 
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE 211

Query: 145 FDGLENWPSHIVYVAHGKLQLAMPMDKV 172
                +  SH++++  GK++     +++
Sbjct: 212 MGFARHVSSHVIFLHQGKIEEEGAPEQL 239

Length = 257

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S G+RRR+ +   LL    + LLDE T  LD +    +L  L +  E  G T++  T
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVT 530

Query: 143 HIFDGLENWPSHIVYVAHGKL 163
           H   GLE     I+ + +GK+
Sbjct: 531 HRLRGLERMDR-IIVLDNGKI 550

Length = 573

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 63  DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
             ++  E+ ++L ID  L+ +   +S G+++RV I   L+   K+LLLDE    LDV  +
Sbjct: 106 IERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
             L   L+K  +E G T+++ TH F+        +  + +GKL
Sbjct: 166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL 208

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 84  KVSDGQRRRVQICMGLL---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
            +SDG +R + + + LL       +LL+DE    L       L+  L KE  E+GA +I+
Sbjct: 189 GISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELL-KELSEKGAQLIF 247

Query: 141 ATH 143
            TH
Sbjct: 248 TTH 250

Length = 256

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 50  VSAEKMIFGVAGIDPQRRA-ELIKVL---DIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 105
           + A   + G++      RA +L+K L        + +H +S GQ++RV I   L+   +V
Sbjct: 104 IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQQQRVAIARALMMEPQV 162

Query: 106 LLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           LL DE T  LD    A ++  + KE  E G T +  TH  +      S +VY+ +G +
Sbjct: 163 LLFDEPTAALDPEITAQIVSII-KELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219

Length = 242

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 83  HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
           H++S G R+RV +   L + P  VLLLDE    LD L R  L   L     E G T++  
Sbjct: 130 HQLSGGMRQRVALARALAVDP-DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188

Query: 142 TH 143
           TH
Sbjct: 189 TH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           +S G+R+R+ +   LL    +LLLDE T  LD     +LL  L      R  T++  TH
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITH 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 82  MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
           M  +S G+R+RV +   L +  K+LLLDE T  LDV A+ + L  +R+     G T++ A
Sbjct: 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAA 193

Query: 142 THIFDGLENWPSHIVYVAHGKLQLAMP 168
            H  +   ++  H+V +  G++  A P
Sbjct: 194 LHDLNLAASYCDHVVVLDGGRVVAAGP 220

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 42  FEVPIQMDVSAEKMIFGVAGIDPQR-RAELIKVLDIDLS-WRMH--KVSDGQRRRVQICM 97
           FE  +  DV+     FG+     ++  AE ++++ +    W     ++S GQ RRV I  
Sbjct: 98  FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157

Query: 98  GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157
            L    +VL+LDE T  LD  AR ++++ L +   + G T++  TH+ D + ++  ++  
Sbjct: 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYL 216

Query: 158 VAHGK-LQLAMPMDKVKEASKL 178
           +  G  +    P D  +E   L
Sbjct: 217 LEKGHIISCGTPSDVFQEVDFL 238

Length = 288

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 26/66 (39%), Positives = 34/66 (51%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           R  ++S G ++RV I   L    KVLLLDE    LD L R +L   L +  EE   T++ 
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170

Query: 141 ATHIFD 146
            TH  D
Sbjct: 171 VTHDVD 176

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 81  RM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136
           RM    H+ S G R+RV I M LL   K+L+ DE T  LDV  +A ++  L +   E   
Sbjct: 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 213

Query: 137 TIIYATH 143
            II  TH
Sbjct: 214 AIIMITH 220

Length = 330

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           ++ ++S GQ++RV +   L +   +LLLDE    +DV  + ++   L KE  + G T++ 
Sbjct: 136 QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL-KELRQEGKTVLM 194

Query: 141 ATH 143
            TH
Sbjct: 195 VTH 197

Length = 254

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 9e-06
 Identities = 27/79 (34%), Positives = 43/79 (54%)

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           +S GQR+R  I M L +   ++LLDE T  LD+  + DLL  L +   E+G T+    H 
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203

Query: 145 FDGLENWPSHIVYVAHGKL 163
            +    + SH++ +  GK+
Sbjct: 204 LNQACRYASHLIALREGKI 222

Length = 265

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 44.3 bits (106), Expect = 9e-06
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           +++S G+R+ V+I   L +  ++L+LDE T  L       L + +R+    +G  +I+ +
Sbjct: 81  YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFIS 139

Query: 143 HIFD 146
           H  D
Sbjct: 140 HRLD 143

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S GQ +R+ +    L+   +LLLDE T  LD    A++L  LR     +G T++  TH
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 74  LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133
              +LS     +S GQ++R+ +   LL   KVL+LDE T +LD +    ++  L    ++
Sbjct: 601 YQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK 660

Query: 134 RGATIIYATHIFDGLENWPSHIVYVAHGKL 163
              TII+  H    +      I+ + HGK+
Sbjct: 661 ---TIIFVAHRLS-VAKQSDKIIVLDHGKI 686

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S G  +RV I + LL     L+ DE T DLDV+ +A +L+ LR+  +  G  I+  T
Sbjct: 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183

Query: 143 H 143
           H
Sbjct: 184 H 184

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 23  SGDLSYLGGE---------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73
           SG +   G +          R+ +     +  +  +++  + +F     D +  A   + 
Sbjct: 15  SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF-FGLRDKEADARAEEA 73

Query: 74  L------DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
           L      D      +  +S GQ++RV I   LLK  K+LLLDE T
Sbjct: 74  LERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPT 118

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 28/81 (34%), Positives = 44/81 (54%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           ++S GQR+RV +   L    +VLLLDE    LD   R +L  +LRK  +E   T ++ TH
Sbjct: 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189

Query: 144 IFDGLENWPSHIVYVAHGKLQ 164
             +        IV +++GK++
Sbjct: 190 DQEEAMEVADRIVVMSNGKIE 210

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           R+  +S GQR+R  + M L +   V+LLDE T  LD+  + +L+R +R E   +G T++ 
Sbjct: 135 RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR-ELNTQGKTVVT 193

Query: 141 ATHIFDGLENWPSHIVYVAHGKL 163
             H  +    +  H+V +A+G +
Sbjct: 194 VLHDLNQASRYCDHLVVLANGHV 216

Length = 255

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
            +  +S G+RRRV I + LL   KVL+LDE T  LD     +L+  L +    R   +I 
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA-RRNRIVIL 198

Query: 141 ATH 143
             H
Sbjct: 199 TIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 83  HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           H +S GQ++RV I  G+L  KP ++++LDE T  LD +  + +++ L  +  + G TII 
Sbjct: 136 HHLSGGQKKRVAIA-GILAMKP-EIIVLDEPTSGLDPMGASQIMKLL-YDLNKEGITIII 192

Query: 141 ATHIFDGLENWPSHIVYVAHGKL 163
           +TH  D +  +   +  ++ GK+
Sbjct: 193 STHDVDLVPVYADKVYVMSDGKI 215

Length = 275

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 65  QRRAELIKVLDIDLSWRMHK----VSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLA 119
           QR AEL++++   LS +  +    +S GQ++RV I   L   P K+LL DE T  LD   
Sbjct: 120 QRVAELLELVG--LSDKADRYPAQLSGGQKQRVAIARALANNP-KILLCDEATSALDPET 176

Query: 120 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
              +L  L+    E G TI+  TH  + ++     +  +  G+L
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220

Length = 339

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S GQ++RV I   L+   KVLLLDE    LD+  R D+   L++  +E G T ++ T
Sbjct: 129 SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVT 188

Query: 143 H 143
           H
Sbjct: 189 H 189

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S GQR+RV +   L    KVLLLDE    LD   R +L R+LRK  +  G T ++ T
Sbjct: 136 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVT 195

Query: 143 H 143
           H
Sbjct: 196 H 196

Length = 345

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S GQR+RV +   L    KVLLLDE    LD   R +L R+LR+  +E   T ++ T
Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194

Query: 143 H 143
           H
Sbjct: 195 H 195

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H++S GQ++RV +   L+   KVLLLDE    LD   R  + + L++   E G T +Y T
Sbjct: 135 HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVT 194

Query: 143 H 143
           H
Sbjct: 195 H 195

Length = 352

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 83  HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
             +S GQ++RV I   L L P ++++ DE T  LD   + ++ + +    + R  T+I  
Sbjct: 141 QNLSGGQKQRVAIASVLALNP-EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISI 199

Query: 142 THIFDGLENWPSHIVYVAHGKLQ 164
           TH  D        IV+ + GKL 
Sbjct: 200 THDMDEAILADKVIVF-SEGKLI 221

Length = 271

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 65  QRRAELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           +R  EL+ ++ +D +       H++S GQ++RV +   L     +LL+DE    LD + R
Sbjct: 112 ERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
             L    ++  +E G TI++ TH  D        I  + +G++ 
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 78  LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137
           LS R+  +S GQR+ + + M  L P K+LLLDE T  LD      ++    K  EE   T
Sbjct: 142 LSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLT 201

Query: 138 IIYATH 143
            +  TH
Sbjct: 202 TLMVTH 207

Length = 263

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           ++  +S G+R+RV I + L+    +L LDE T  LD  +   ++  LR+  +  G TII 
Sbjct: 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIIC 166

Query: 141 ATH 143
           + H
Sbjct: 167 SIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S G+++RV I  G +  + +LLLDE T  LD   R  ++  +  E + RGA +I   H
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA-EAKARGAALIGIFH 207

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           R  ++S GQ++RV I   L++  K++L DE    LD  +   ++  L++   E G T+I 
Sbjct: 141 RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV 200

Query: 141 ATH 143
           + H
Sbjct: 201 SLH 203

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII- 139
           R  ++S GQ++RV I   L +   ++L DE    LD      ++ +L++  +E G T+I 
Sbjct: 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201

Query: 140 ----------YATHIFDGLENWPSHIVY 157
                     YA  I  GL+     IV+
Sbjct: 202 NLHQVDLAKKYADRIV-GLKA--GEIVF 226

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 15/160 (9%)

Query: 60  AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117
               P  + E+ K L I+  L   + ++S G+ +RV I   L K   + LLDE +  LDV
Sbjct: 89  FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148

Query: 118 LARADLLRFLRKECEERGAT-------IIYATHIFDGL---ENWPSHIVY-VAHGKLQLA 166
             R    + +R+  E    T       II   ++ D L   E  PS  V  VA+    L 
Sbjct: 149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS--VNGVANPPQSLR 206

Query: 167 MPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASG 206
             M++  +   ++  R  E+   +       + RE+K SG
Sbjct: 207 SGMNRFLKNLDITFRRDPETGRPRINKLGSVKDREQKESG 246

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           H +S GQ++RV I   L+   K++L DE T  LD  +  D++  ++K   E+G TI+  T
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199

Query: 143 H---IFD 146
           H   I D
Sbjct: 200 HDNRILD 206

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 26/201 (12%)

Query: 15  FHDTALTSSGDLSYLGGEWRREVAFAG-------FEVPIQMDVSAEKMIFGVAGIDPQRR 67
           +H T  T + +L  L    R++V+          FE  +  DV      FG +  + + +
Sbjct: 69  YHITPETGNKNLKKL----RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK 124

Query: 68  A-ELIKVLDIDLSWRMH---KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123
           A + +K + +          ++S GQ RRV I   +    ++L LDE    LD   R ++
Sbjct: 125 ALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184

Query: 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRT 183
           ++ L K+ ++ G T+I  TH  D +  +   ++ + HGKL        +K AS   +   
Sbjct: 185 MQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL--------IKHASPKEIFSD 235

Query: 184 VESWLRKER-DEERKRRRERK 203
            E WL+K   DE    R   K
Sbjct: 236 KE-WLKKHYLDEPATSRFASK 255

Length = 287

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S GQR+R+ +   LL   K+LLLDE T  LD    A +L+ L +  + R  T+I   H
Sbjct: 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGR--TVIIIAH 666

Length = 709

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 77  DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135
           DLS R + ++S GQR+R  I M L +    +LLDE   +LD+     +++ LR+  +E G
Sbjct: 127 DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186

Query: 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
            TI+   H  +    +  HIV + +GK+      D++ +   LS
Sbjct: 187 KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILS 230

Length = 252

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           +S GQ++RV I   L    KVLL DE T  LD      +L  L++     G TI+  TH 
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200

Query: 145 FDGLENWPSHIVYVAHGKL 163
            D ++     +  +++G+L
Sbjct: 201 MDVVKRICDCVAVISNGEL 219

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 12/128 (9%)

Query: 57  FGVAGIDPQRRAELIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 114
           FG A  D ++  E I ++ +  L+ R+   +S G+R+R  I M + +  + LLLDE T  
Sbjct: 120 FGAA--DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177

Query: 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174
           LD+  + D+L  + +  +ERG T+I   H  +    +  ++V +  G++        + +
Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM--------IAQ 229

Query: 175 ASKLSLMR 182
            +   LMR
Sbjct: 230 GTPAELMR 237

Length = 265

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQ+RRV +   L+    + +LDE T  LD  A A     +R     +G  +I ATHI 
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-AQGGIVIAATHIP 187

Query: 146 DGLEN 150
            GL  
Sbjct: 188 LGLPG 192

Length = 207

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 65  QRRAELIKV-----LDIDLSWRM-HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDV 117
           +R   +I+      LD     R  H+ S GQR+R+ I   L LKP +++LLDE T  LD 
Sbjct: 401 ERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP-ELILLDEPTSALDR 459

Query: 118 LARADLLRFLRKECEERGATIIYATH 143
             +A +L  LR   ++ G + ++ +H
Sbjct: 460 SVQAQVLDLLRDLQQKHGLSYLFISH 485

Length = 534

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 61  GIDPQRRA----ELIKVLDIDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
           G D +R      EL+ ++ +D S    +    +S GQ++RV +   L     +LL+DE  
Sbjct: 104 GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF 163

Query: 113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMP 168
             LD + R  L   +++  +E G TI++ TH  D        I  +  G++ Q   P
Sbjct: 164 GALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP 220

Length = 309

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 27/143 (18%)

Query: 22  SSGDLSYLGGEWRREVA---------FAGFEVPIQMDVSAEKMIFG--VAGIDP----QR 66
           +SGDL ++G +   +V          F  + +   + V AE M FG  +AG       QR
Sbjct: 56  TSGDL-FIGEKRMNDVPPAERGVGMVFQSYALYPHLSV-AENMSFGLKLAGAKKEEINQR 113

Query: 67  RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD----VLAR 120
             ++ +VL +   L  +   +S GQR+RV I   L+    V LLDE   +LD    V  R
Sbjct: 114 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173

Query: 121 ADLLRFLRKECEERGATIIYATH 143
            ++ R  ++     G T+IY TH
Sbjct: 174 IEISRLHKR----LGRTMIYVTH 192

Length = 369

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 78  LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137
           LS   H++S G R+RV I M L     VL+ DE T  LDV  +A +L+ ++   +E    
Sbjct: 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG 221

Query: 138 IIYATH 143
           +I+ TH
Sbjct: 222 VIFITH 227

Length = 623

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S GQR+RV +   L++   +LLLDE    LD   R ++L  + + C+ER  T++  +
Sbjct: 128 GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187

Query: 143 H 143
           H
Sbjct: 188 H 188

Length = 232

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 59  VAGIDP---QRRAELIKVLDIDLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEI 111
           V G      QRR        + L  +      ++S G+++RV I   ++    +LL DE 
Sbjct: 106 VRGKKEREIQRRVGAALRQ-VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164

Query: 112 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 162
           T +LD      +L  L++  + RG T+I ATH    ++     ++ +  G+
Sbjct: 165 TGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 65  QRRAELIKVLDIDLSWRMH----KVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLA 119
           Q R  L KV    L+ R H    ++S GQ++RV I   L +KP K++L DE T  LD   
Sbjct: 116 QARELLAKV---GLAERAHHYPSELSGGQQQRVAIARALAVKP-KLMLFDEPTSALDPEL 171

Query: 120 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           R ++L+ ++   EE G T++  TH     E   S ++++  G++
Sbjct: 172 RHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRI 214

Length = 240

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 74  LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133
           LD  +  +   +S GQ +R+ +   LL+P ++LLLDE T  LD  +   +++ L      
Sbjct: 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA--AS 532

Query: 134 RGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           R  T +  TH  + L  W   I  +  G++
Sbjct: 533 RRQTTLMVTHQLEDLAQW-DQIWVMQDGQI 561

Length = 588

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 63  DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
             ++   ++K LD+          +S GQ++R+ I   LL    +L+ DE T  LD    
Sbjct: 103 GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD-YKN 161

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
            + +  L +E   +G  +I  TH ++ L      ++ +A+G +
Sbjct: 162 MERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
            ++S GQ+RRV +   LL    + +LDE T  LD    A     +   C  RG  ++  T
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTT 182

Query: 143 HI 144
           H 
Sbjct: 183 HQ 184

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 81  RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           + H++S GQ++RV +   L+   K+LLLDE    LD   R  +   L+   E+ G T ++
Sbjct: 97  KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156

Query: 141 ATH 143
            TH
Sbjct: 157 VTH 159

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 51  SAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 108
           SA +  FG        + E++K L+++  L   + ++S G+ +RV I   L +   + LL
Sbjct: 424 SAIRSAFG----SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL 479

Query: 109 DEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           DE +  LDV  R  + + +R+  E    T +   H
Sbjct: 480 DEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514

Length = 591

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 25/58 (43%), Positives = 29/58 (50%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S GQ++RV I   L    KVLL DE T  LD      +L  LR    E G TI+  TH
Sbjct: 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           K+S G+++RV I   +LK   +LLLDE T  LD     ++   LR   + R  T I   H
Sbjct: 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAH 194

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 85  VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           +S GQ++RV I  G+L  +P K+++LDE T  LD   +  +L+ +RK  ++   T+I  T
Sbjct: 144 LSGGQKQRVAIA-GILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201

Query: 143 HIFD 146
           H  D
Sbjct: 202 HDID 205

Length = 282

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 83  HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
           H++S GQ++RV I   L L+P  +++LDE T  LD   R ++L  +R+  E++G T++  
Sbjct: 139 HRLSGGQKQRVAIAGVLALQP-DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSI 197

Query: 142 THIFD 146
           TH  D
Sbjct: 198 THDLD 202

Length = 279

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 84  KVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           ++S GQ++RV I   + ++P K+++LDE T  LD   R +L++ ++   ++   T+I  T
Sbjct: 140 RLSGGQKQRVAIAGAVAMRP-KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISIT 198

Query: 143 HIFD 146
           H  D
Sbjct: 199 HDLD 202

Length = 279

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 63  DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           DP R  +L +   I   L  R   +S G+ R+  +C  L+    +L+LDE    LDV +R
Sbjct: 112 DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171

Query: 121 ADLLRFLRK 129
             L   L  
Sbjct: 172 QQLAELLAS 180

Length = 490

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 80  WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139
           + +H +S GQ++RV I   L+   +VLL DE T  LD    A ++  +R E  E G T +
Sbjct: 138 FPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIR-ELAETGITQV 195

Query: 140 YATHIFDGLENWPSHIVYVAHGKL 163
             TH  +      S +VY+ +G +
Sbjct: 196 IVTHEVEVARKTASRVVYMENGHI 219

Length = 242

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139
           S G+++RV I  G +  + +LLLDE T  LD   RA ++  +R E + RGA ++
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR-EAKARGAALV 206

Length = 235

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G++ R+ +   LL+P  +LLLDE T  LD+    + L  L +   +   T++  +H  
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI----ESLEALEEALLDFEGTVLLVSHDR 496

Query: 146 DGLENWPSHIV 156
             L+   + I 
Sbjct: 497 YFLDRVATRIW 507

Length = 530

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 66  RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           R +E+++ +D+D   L  R  ++S GQ +RV +   L    K+L+LDE   +LD++ +A 
Sbjct: 130 RASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189

Query: 123 LLRFLRKECEERGATIIYATH 143
           ++R L+K  ++ G   ++ TH
Sbjct: 190 VIRLLKKLQQQFGTACLFITH 210

Length = 268

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 15/136 (11%)

Query: 56  IFGVAGIDP-QRRAELIKVLDIDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDE 110
           I+G+ G    QR  E+I++  + L    HK    +S G R+RV +   L+   KVL+LDE
Sbjct: 102 IYGMKGQLLKQRVEEMIEL--VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159

Query: 111 ITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 167
            T  LD   ++   ++++ + K+      TII +THI   +E     ++ +  GK+    
Sbjct: 160 PTTGLDPNQLVEIRNVIKNIGKD-----KTIILSTHIMQEVEAICDRVIIINKGKIVADK 214

Query: 168 PMDKVKEASKLSLMRT 183
            +D++  A+K  ++  
Sbjct: 215 KLDELSAANKKQVIEV 230

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 10/62 (16%)

Query: 86  SDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARA---DLLRFLRKECEERGATIIYA 141
           S GQ++R+ +   L  +P +VLLLDE T  LD ++ A   +L+  L+KE      TI+  
Sbjct: 143 SGGQQQRLCLARALANEP-EVLLLDEPTSALDPISTAKIEELIAELKKE-----YTIVIV 196

Query: 142 TH 143
           TH
Sbjct: 197 TH 198

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 23  SGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGVAGIDPQRRAELIKVLDIDLSWR 81
              L+    E  R + + G    ++ ++SA E + F  A     +R     +  + L+  
Sbjct: 61  GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF 120

Query: 82  ----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137
                 ++S GQ+RR+ +    L    + +LDE T  LD    A L   LR     RG  
Sbjct: 121 EDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGI 179

Query: 138 IIYATHI 144
           ++  TH 
Sbjct: 180 VLLTTHQ 186

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 59  VAGIDPQRRAE----LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
           + G   Q R E    L+K++ ++        ++S G ++RV +   L     +LL+DE  
Sbjct: 98  LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157

Query: 113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMDK 171
             LD L R  +   L+K       TI++ TH  D        IV +  G++ Q+  P + 
Sbjct: 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217

Query: 172 VKEASKLSLMRTVESWLRKER 192
           ++  +       VE ++ K  
Sbjct: 218 LRNPAN----EYVEEFIGKVD 234

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           ++S GQ++RV I   L    KV+L DE+T  LD     ++L  +R+   E   T++  TH
Sbjct: 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 74  LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133
           LDID    +  +S  QR+ V+I   L    +VL+LDE T  L V     L   +R   + 
Sbjct: 135 LDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR-RLKA 193

Query: 134 RGATIIYATHIFD 146
           +G  IIY +H  D
Sbjct: 194 QGVAIIYISHRLD 206

Length = 500

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 19/80 (23%), Positives = 40/80 (50%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           ++S GQ R++ I   L     +++LDE T  LD  ++  ++R L+    +   TII  +H
Sbjct: 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204

Query: 144 IFDGLENWPSHIVYVAHGKL 163
             + +  +   ++ +  G +
Sbjct: 205 DMNEVARYADEVIVMKEGSI 224

Length = 286

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S G  +R+ I + LL     ++ DE T DLDV+A+A +L  L    ++R   ++  TH
Sbjct: 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199

Length = 254

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 63  DPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 119
           D     +L+    +    L+  + ++S G+++R+ +   L    K+LLLDEIT  LD   
Sbjct: 109 DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168

Query: 120 RADLLRFLRKECEERGATIIYATH 143
           + ++   + +   E+   +++ TH
Sbjct: 169 KRNIEEMIHRYVREQNVAVLWITH 192

Length = 223

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 85  VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           +S GQR+R+ I   L+   ++L+ DE T  LD  + A ++R +R+ C  RG T+I   H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAH 650

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
           + +S GQ++RV I   L     V++LDE    LD   +  L+  L      +G T+I AT
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL-DRLHNQGKTVIVAT 195

Query: 143 HIFDGLENWPSHIVYVAHGK 162
           H  D    W   ++ +  G+
Sbjct: 196 HDVDLAAEWADQVIVLKEGR 215

Length = 274

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           K+S G+RRRV +C  LL    +LLLDE T  LD  + A L + L+    E   T++  TH
Sbjct: 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ----EYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 105 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           +LL+DE    L    + +L+RFL+K  ++    II  TH 
Sbjct: 277 ILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTHS 316

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 320

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G ++R+ I + LL    +L+LDE T  LD     +L   +    ++ G T++ ++H+ 
Sbjct: 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLL 186

Query: 146 DGLENWPSHIVYVAHGKL 163
             ++     I  +  GKL
Sbjct: 187 SEIQKVADRIGIINKGKL 204

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 86  SDGQRRRVQI----CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141
           S GQ++RV I     M    P KV+L DE T  LD     ++L  ++   EE G T+I  
Sbjct: 138 SGGQQQRVAIARALAM---DP-KVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIV 192

Query: 142 THIFDGLENWPSHIVYVAHGK 162
           TH           ++++  GK
Sbjct: 193 THEMGFAREVADRVIFMDQGK 213

Length = 240

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 15/88 (17%)

Query: 68  AELIKVLDI----DLSWRMHKV-------SDGQRRRVQIC-MGLLKPFKVLLLDEITVDL 115
           AEL+ VL      DL+ R+ +        S G+++R+    + L KP K + LDE T  L
Sbjct: 488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP-KWVFLDEATSAL 546

Query: 116 DVLARADLLRFLRKECEERGATIIYATH 143
           D      L + L++E     AT+I   H
Sbjct: 547 DEETEDRLYQLLKEELP--DATVISVGH 572

Length = 604

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA-- 141
            +S G+R+RV I   L+    VL  D  T  LD     ++L+ +R   +    T   +  
Sbjct: 118 GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY 177

Query: 142 ------THIFD 146
                   +FD
Sbjct: 178 QASDEIYDLFD 188

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 8/137 (5%)

Query: 57  FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 114
           +G+A     +  +++ +L I+  L      +S G+++RV I   LL   ++LL+DE    
Sbjct: 99  YGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158

Query: 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174
           LD+  + +LL +L +   E    I+Y +H  D +      +V +  GK++   P+++V  
Sbjct: 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218

Query: 175 ASKLSLMRTVESWLRKE 191
           +   S MR    WL KE
Sbjct: 219 S---SAMR---PWLPKE 229

Length = 352

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 86  SDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           S G R+RV +   + L P ++L LDE T  LD ++   +   +R+  +  G T+I  TH 
Sbjct: 147 SGGMRKRVALARAIALDP-ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205

Query: 145 FDGLENWPSHIVYVAHGKLQ 164
            D L      +  +A GK+ 
Sbjct: 206 LDSLLTIADRVAVLADGKVI 225

Length = 263

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 66  RRAELIKVLDI---DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           R AEL+ ++ +   D      ++S GQ +R+ I   L    K+++LDE   +LD++ +A 
Sbjct: 129 RIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188

Query: 123 LLRFLRKECEERGATIIYATH 143
           +L  LRK  +  G   ++ TH
Sbjct: 189 ILELLRKLQQAFGTAYLFITH 209

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G++RR+ I   LL    +LLLDE T  LD      +L  L +  + +  T++  TH  
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHRL 534

Query: 146 DGLENWPSHIVYVAHGKL 163
            GLE +   I  + +G++
Sbjct: 535 TGLEQF-DRICVMDNGQI 551

Length = 574

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 74  LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL-----DVLARADLLRFLR 128
           +DID    +  +S GQR+ V+I   L +  +V+  DE T  L     + L R  ++R LR
Sbjct: 130 VDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELR 187

Query: 129 KECEERGATIIYATH 143
            E    G  I+Y +H
Sbjct: 188 AE----GRVILYVSH 198

Length = 501

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 49  DVSAEKMIFGVAGIDPQRR--AELIKV--LDIDLSWRMHKVSDGQRRRVQICMGLLKPFK 104
           +V+   +I G +G D +RR  A L KV  LD   ++ + ++S G+++RV I   ++    
Sbjct: 99  NVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI-QLSGGEQQRVGIARAVVNKPA 157

Query: 105 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           VLL DE T +LD      +LR L +E    G T++ ATH
Sbjct: 158 VLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 84  KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           ++S GQ++RV +   L    ++LLLDE    LD   R +L R+LR+  EE   T ++ TH
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195

Length = 353

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 65  QRRAELIKVLDIDLSWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           +R AEL+ ++ +  S R +  ++S GQ++RV +   L     +LLLDE    LD   R  
Sbjct: 113 ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH 172

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMP 168
           L   +R+     G T I  TH  +   +    IV + HG + Q+  P
Sbjct: 173 LRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTP 219

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 10/65 (15%)

Query: 84  KVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLR---KECEER-GATI 138
           ++S GQ++RV +   L LKP KVLL DE   +LD    A+L R +R   +E +++   T 
Sbjct: 136 QISGGQQQRVALARALILKP-KVLLFDEPLSNLD----ANLRRSMREKIRELQQQFNITS 190

Query: 139 IYATH 143
           +Y TH
Sbjct: 191 LYVTH 195

Length = 351

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 80  WRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138
           W    +S G+++R+    + L KP K + LDE T  LD     +    L +  +E G T+
Sbjct: 88  W-DDVLSGGEQQRLAFARLLLHKP-KFVFLDEATSALDE----ESEDRLYQLLKELGITV 141

Query: 139 IYATH 143
           I   H
Sbjct: 142 ISVGH 146

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 14/71 (19%)

Query: 81  RMHK----VSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARA---DLLRFLRKECE 132
           R+HK    +S GQ++R+ I   L +KP +VLL+DE T  LD ++     +L+  L+K+  
Sbjct: 142 RLHKSALGLSGGQQQRLCIARALAVKP-EVLLMDEPTSALDPISTLKIEELITELKKK-- 198

Query: 133 ERGATIIYATH 143
               TI+  TH
Sbjct: 199 ---YTIVIVTH 206

Length = 253

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 40/130 (30%), Positives = 52/130 (40%), Gaps = 39/130 (30%)

Query: 41  GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL 100
             EVP +  V      F   G D Q++   +  L           S G+R RV +   L 
Sbjct: 418 KREVPSRAYVGR----FNFKGSDQQKK---VGQL-----------SGGERNRVHLAKTLK 459

Query: 101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERG--ATII---------YATHI--FDG 147
               VLLLDE T DLDV    + LR L +   E    A +I          ATHI  F+G
Sbjct: 460 SGGNVLLLDEPTNDLDV----ETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEG 515

Query: 148 LENWPSHIVY 157
                SH+ +
Sbjct: 516 ----DSHVEW 521

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S GQ++RV I   L    +V+L DE T  LD     ++L+ ++   EE G T++  TH  
Sbjct: 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEM 212

Query: 146 DGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177
               +  SH++++  GK++   P ++V    +
Sbjct: 213 GFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ 244

Length = 256

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S G ++R+QI   L+   +++ +DE T  LDV  +A LL  LR    + G  +I  TH
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S GQR+ V +   LL+   +LLLDE T  +D  +       L++    +  T++  TH
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLVTH 658

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 15/65 (23%)

Query: 86  SDGQRRRVQICMGL-LKPFKVLLLDEITVDLD------VLARADLLRFLRKECEERGATI 138
           S GQ++RV I   L + P KV+L DE T  LD      VL   D+++ L +E    G T+
Sbjct: 137 SGGQQQRVAIARALAMNP-KVMLFDEPTSALDPELVGEVL---DVMKDLAEE----GMTM 188

Query: 139 IYATH 143
           +  TH
Sbjct: 189 VVVTH 193

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PRK13409	590	putative ATPase RIL; Provisional	99.98
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.98
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.98
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.98
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.97
COG0488	530	Uup ATPase components of ABC transporters with dup	99.97
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.97
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.97
PLN03140	1470	ABC transporter G family member; Provisional	99.97
PLN03140	1470	ABC transporter G family member; Provisional	99.97
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.97
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.97
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.97
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.97
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.97
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.97
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.97
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.97
PLN03232	1495	ABC transporter C family member; Provisional	99.97
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.96
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.96
PLN03073	718	ABC transporter F family; Provisional	99.96
PTZ00243	1560	ABC transporter; Provisional	99.96
COG0488	530	Uup ATPase components of ABC transporters with dup	99.96
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.96
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.96
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.96
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.95
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.95
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.95
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.95
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.95
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.94
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.94
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.94
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.94
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.93
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.93
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.93
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.93
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.92
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.92
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.91
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.91
KOG0062	582	consensus ATPase component of ABC transporters wit	99.91
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.9
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.89
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.89
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.89
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.88
KOG0062	582	consensus ATPase component of ABC transporters wit	99.87
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.87
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.87
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.84
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.84
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.83
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.83
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
COG4178	604	ABC-type uncharacterized transport system, permeas	99.83
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.82
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.81
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.81
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.8
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.79
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.78
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.77
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.75
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.74
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.73
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.72
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.72
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.72
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.64
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.64
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.59
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.59
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.56
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.55
PHA02562	562	46 endonuclease subunit; Provisional	99.55
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.5
PRK10869	553	recombination and repair protein; Provisional	99.49
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.49
PRK03918	880	chromosome segregation protein; Provisional	99.48
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.46
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.46
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.45
PRK01156	895	chromosome segregation protein; Provisional	99.45
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.45
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.44
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.44
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.39
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.36
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.35
PRK13695	174	putative NTPase; Provisional	99.28
PRK00064	361	recF recombination protein F; Reviewed	99.26
PRK02224	880	chromosome segregation protein; Provisional	99.25
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.25
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.23
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.17
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.17
PRK06067	234	flagellar accessory protein FlaH; Validated	99.12
cd01128	249	rho_factor Transcription termination factor rho is	99.08
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.07
TIGR00611	365	recf recF protein. All proteins in this family for	99.05
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.04
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.02
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.96
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.92
PRK14079	349	recF recombination protein F; Provisional	98.89
COG3910	233	Predicted ATPase [General function prediction only	98.89
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.86
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.86
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.8
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.79
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.76
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.63
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.59
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.57
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.54
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.49
smart00382	148	AAA ATPases associated with a variety of cellular	98.47
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.43
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.4
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.3
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.27
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.26
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.26
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.25
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.15
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.03
PRK11823	446	DNA repair protein RadA; Provisional	97.96
PF13175	415	AAA_15: AAA ATPase domain	97.95
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	97.92
PRK09302	509	circadian clock protein KaiC; Reviewed	97.92
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.87
PRK13891	852	conjugal transfer protein TrbE; Provisional	97.82
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.8
COG4637	373	Predicted ATPase [General function prediction only	97.77
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.76
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.75
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.72
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.69
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.68
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.67
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.67
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.67
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.66
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	97.65
PRK04328	249	hypothetical protein; Provisional	97.64
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.62
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.57
PTZ00035	337	Rad51 protein; Provisional	97.56
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.55
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.54
PRK13764	602	ATPase; Provisional	97.53
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.5
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.49
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.48
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.47

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-49  Score=335.26  Aligned_cols=175  Identities=23%  Similarity=0.326  Sum_probs=155.7

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCee---------ccccEEEecccCCCCccCcHHHHHh-c---c
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE---------WRREVAFAGFEVPIQMDVSAEKMIF-G---V   59 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~---------~~~~i~~v~~~~~~~~~lt~~~~~~-~---~   59 (259)
                      -+||+++|+||||||||||         +++|+|.++|.+         .|+++|+|+|+.++||++|+.+++. +   .
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v  105 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV  105 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence            3799999999999999999         499999999953         3577999999999999999987653 2   2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +.+.++|+.+|+.  .+.++.+|||||||||+|||||+.+|+++|+|||||+|||+...++++.++++++ 
T Consensus       106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-  184 (240)
T COG1126         106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-  184 (240)
T ss_pred             cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-
Confidence            34443    3345789999996  4678999999999999999999999999999999999999999999999999986 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  177 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~  177 (259)
                      .|+|.|++||+|.++.++||||++|++|+++..|++++++....
T Consensus       185 eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~  228 (240)
T COG1126         185 EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK  228 (240)
T ss_pred             cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence            59999999999999999999999999999999999999987644

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-46  Score=324.86  Aligned_cols=177  Identities=24%  Similarity=0.340  Sum_probs=161.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc---cCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG---VAGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~   62 (259)
                      +||+++++|||||||||+         +++|+|.++|+++        |++|||+-|+..+||++|+.+++.-   +.+|
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w  105 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW  105 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence            799999999999999999         5999999999864        6789999999999999999987753   3456


Q ss_pred             CH----HHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           63 DP----QRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        63 ~~----~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +.    ++++++++.++++    .++++++|||||||||.+||||+.+|++|||||||++|||.+|..+-+.+.++.++.
T Consensus       106 ~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l  185 (309)
T COG1125         106 DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL  185 (309)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh
Confidence            64    3467899999996    367899999999999999999999999999999999999999999999999999888


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS  179 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~  179 (259)
                      |+|||++|||++|+.+++|||.+|++|+++..++|+++.......
T Consensus       186 ~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~  230 (309)
T COG1125         186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND  230 (309)
T ss_pred             CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence            999999999999999999999999999999999999998765433

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.8e-45  Score=328.15  Aligned_cols=236  Identities=22%  Similarity=0.333  Sum_probs=184.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHH---hccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMI---FGVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~---~~~~~~~   63 (259)
                      +||+++++||||||||||         +++|+|.++|.+.       ++.+||++|++.+|+.+|+.+++   ..+++..
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~  109 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS  109 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence            699999999999999999         5999999999764       35699999999999999998765   2344432


Q ss_pred             ----HHHHHHHHHHcCCCc--cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDIDL--SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~~--~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .++++++++.+++..  ++++++||+|||||++||+||+++|++|||||||+||||.++..++++|++++++.|+|
T Consensus       110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~t  189 (293)
T COG1131         110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT  189 (293)
T ss_pred             hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcE
Confidence                456889999999975  67899999999999999999999999999999999999999999999999998764489


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchHHHHHHHHHhhCCCCCcccCCCCc
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGS  217 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (259)
                      ||+|||.+++++.+||+|++|++|++++.|+++++.........      ..  ......  ..  ..   .........
T Consensus       190 vlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~------~~--~~~~~~--~~--~~---~~~~~~~~~  254 (293)
T COG1131         190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV------IE--LEPERL--EL--AE---LLEGLKLVK  254 (293)
T ss_pred             EEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCce------EE--Eecccc--cc--hh---hhhcccccc
Confidence            99999999999999999999999999999999887653211000      00  000000  00  00   000000000


Q ss_pred             eeeCCHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989          218 RVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST  254 (259)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~  254 (259)
                      . ..........+...++....+.....+||++|+..
T Consensus       255 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  290 (293)
T COG1131         255 G-EEELAEILEALLEEGVKIESIEVKEPSLEDVFLEL  290 (293)
T ss_pred             c-chhHHHHHHHHHHcCCceeeeecCCCCHHHHHHHH
Confidence            0 22345567777788888889999999999999864

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-45  Score=324.13  Aligned_cols=177  Identities=24%  Similarity=0.320  Sum_probs=159.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+|+||+|||||         |++|+|.++|.++           |++||+++|++.+....|+.+++. .  .
T Consensus        31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei  110 (339)
T COG1135          31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL  110 (339)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence            799999999999999999         6999999999753           577999999999999899886553 2  2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+|+.  .++++.+|||||||||+|||||+.+|++||.|||||+|||.+.+.++++|++++++
T Consensus       111 ag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~  190 (339)
T COG1135         111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRE  190 (339)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH
Confidence            34433    4567899999996  46789999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS  179 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~  179 (259)
                      .|.||++|||.|+.+.++||||.+|++|++++.|+..+++......
T Consensus       191 lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~  236 (339)
T COG1135         191 LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA  236 (339)
T ss_pred             cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH
Confidence            9999999999999999999999999999999999999998765443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=7.2e-45  Score=318.95  Aligned_cols=174  Identities=21%  Similarity=0.371  Sum_probs=154.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccC----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA----   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~----   60 (259)
                      +||+++|+||||||||||         +.+|+|.++|+++        .+.++|+||.....+.+|+.++. +|.+    
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~  106 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG  106 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence            799999999999999999         4899999999864        45799999998888888988754 3321    


Q ss_pred             ---CCCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           61 ---GIDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        61 ---~~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                         .++.   +.+.++++.+++.  .++.+.+|||||||||.|||||+++|++|||||||++||+..+.+++++++++++
T Consensus       107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~  186 (258)
T COG1120         107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR  186 (258)
T ss_pred             cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence               1122   3466789999985  4778999999999999999999999999999999999999999999999999998


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      ++|+|||+++||++.+.++||++++|++|++++.|+++++....
T Consensus       187 ~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e  230 (258)
T COG1120         187 EKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE  230 (258)
T ss_pred             hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHH
Confidence            88999999999999999999999999999999999999887643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-44  Score=311.44  Aligned_cols=164  Identities=26%  Similarity=0.346  Sum_probs=145.9

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHH-hccC--CCC---
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMI-FGVA--GID---   63 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~-~~~~--~~~---   63 (259)
                      -+||+++|+||||||||||         +++|+|.++|...   ..+++|++|+..++|..|+.+++ +++.  +.+   
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e  106 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE  106 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence            3799999999999999999         5899999999865   46799999999999999998765 3332  222   


Q ss_pred             -HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           64 -PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        64 -~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                       .+++.++++.+||.  .++++++|||||||||+|||||+.+|++||||||+++||..++..+.+.+.++.++.++||++
T Consensus       107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvll  186 (248)
T COG1116         107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL  186 (248)
T ss_pred             HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence             24567899999996  578999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EeCChhHHhccCCeEEEEeC--CeEEE
Q 024989          141 ATHIFDGLENWPSHIVYVAH--GKLQL  165 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l~~--G~i~~  165 (259)
                      ||||++|+-.++|||++|.+  |+|..
T Consensus       187 VTHdi~EAv~LsdRivvl~~~P~~i~~  213 (248)
T COG1116         187 VTHDVDEAVYLADRVVVLSNRPGRIGE  213 (248)
T ss_pred             EeCCHHHHHhhhCEEEEecCCCcceee
Confidence            99999999999999999999  55543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=1.8e-43  Score=320.42  Aligned_cols=172  Identities=22%  Similarity=0.301  Sum_probs=152.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.       ++.+||++|++.+|+.+|+.+++.   ..++.+
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~  111 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS  111 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence            699999999999999999         5899999999874       356999999999999999987653   233333


Q ss_pred             H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .    +++.++++.+++.  .++++++||||||||++||+||+++|++|||||||+||||.++..++++|+++.+ .|+|
T Consensus       112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~t  190 (306)
T PRK13537        112 AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKT  190 (306)
T ss_pred             HHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence            2    3456788999985  4678999999999999999999999999999999999999999999999999864 5999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ||++||++++++.+||||++|++|++++.|+++++...
T Consensus       191 ill~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        191 ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             EEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            99999999999999999999999999999999998653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.8e-43  Score=319.62  Aligned_cols=249  Identities=19%  Similarity=0.281  Sum_probs=182.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++.   ..++..
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~   97 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP   97 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence            799999999999999999         5899999999764       346999999998999999887543   123332


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+++.++++.+++.  .++++.+|||||||||+||+||+++|++|||||||+||||.++..++++|+++++ .|+|
T Consensus        98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~t  176 (302)
T TIGR01188        98 KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVT  176 (302)
T ss_pred             HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence                23467899999986  4778999999999999999999999999999999999999999999999999875 5999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHH-HHHHHHhhhchHHHH-H-HHH-HhhCCCCCcccC
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMR-TVESWLRKERDEERK-R-RRE-RKASGLPEFDKQ  213 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~  213 (259)
                      ||++||+++++.++||++++|++|+++..|+++++.......... .....  ........ . ... ....++......
T Consensus       177 vi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (302)
T TIGR01188       177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDI--QSLKVEVSMLIAELGETGLGLLAVTVD  254 (302)
T ss_pred             EEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCceEEEEecCc--hhhhhhhhHHHhhhhhccccceeeeec
Confidence            999999999999999999999999999999999886532111000 00000  00000000 0 000 000111111111


Q ss_pred             CCCceee--C---CHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989          214 IHGSRVT--G---DPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST  254 (259)
Q Consensus       214 ~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~  254 (259)
                      .+...+.  .   ...++...+...++.+.++....++|||+|++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~Le~~f~~~  300 (302)
T TIGR01188       255 SDRIKILVPDGDETVPEIVEAAIRNGIRIRSISTERPSLDDVFLKL  300 (302)
T ss_pred             CCeEEEEEcCchhHHHHHHHHHHHCCCceEEEEcCCCCHHHHHHHH
Confidence            1112221  1   124566667778999999999999999999864

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.6e-44  Score=306.45  Aligned_cols=173  Identities=18%  Similarity=0.247  Sum_probs=154.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHhc-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIFG-V--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~~-~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++++|+++|+-.+|..+|+.+++.. +  
T Consensus        33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre  112 (263)
T COG1127          33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE  112 (263)
T ss_pred             CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence            799999999999999999         5999999999864           4679999999999999999887642 2  


Q ss_pred             -CCCCHHHHH----HHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           60 -AGIDPQRRA----ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        60 -~~~~~~~~~----~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                       ...+++.++    .-++.+|+.   .+..+.+|||||++|++||||++.+|++|++||||+||||.+...+-++|+++.
T Consensus       113 ~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~  192 (263)
T COG1127         113 HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN  192 (263)
T ss_pred             hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHH
Confidence             234444433    346778885   467899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.-|.|++++|||++.+..+|||+++|.+|+|++.|+++++.+.
T Consensus       193 ~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s  236 (263)
T COG1127         193 DALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS  236 (263)
T ss_pred             HhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence            88899999999999999999999999999999999999999763

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.4e-43  Score=303.86  Aligned_cols=161  Identities=28%  Similarity=0.424  Sum_probs=140.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh---c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF---G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~---~   58 (259)
                      +||+++|+||||||||||         +++|.|.++|.++            ++.+||++|+..+.+.+|+.+++.   .
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~  109 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL  109 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence            799999999999999999         5999999999653            356999999999999999988653   1


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--cc-ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LS-WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~-~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +.+..    .++..++++.+|+.  .. +++.+|||||||||+|||||+++|++||.||||.+||..+.+.+++++++++
T Consensus       110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~  189 (226)
T COG1136         110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN  189 (226)
T ss_pred             HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH
Confidence            22322    23466788999985  33 7799999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  164 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~  164 (259)
                      ++.|+|||++|||...+. .|||++.|++|++.
T Consensus       190 ~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         190 KERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             HhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            888999999999987665 79999999999943

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=304.57  Aligned_cols=174  Identities=27%  Similarity=0.374  Sum_probs=154.3

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCC--CCccCcHHHHHhc---
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVP--IQMDVSAEKMIFG---   58 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~--~~~~lt~~~~~~~---   58 (259)
                      -+||.++|+|+||||||||         +++|+|.++|.+.         .+.+.+|+|++.  +.|..|+.+.+..   
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~  110 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR  110 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence            3799999999999999999         5999999999643         356889999874  5777888876642   


Q ss_pred             cCCCC--HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           59 VAGID--PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        59 ~~~~~--~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      ..+.+  .+++.++++.+|++   .++++.+|||||+||++|||||+.+|++|||||||++||+..+.+++++|.++.++
T Consensus       111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~  190 (252)
T COG1124         111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE  190 (252)
T ss_pred             cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence            22333  34578899999996   47889999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +|.|+|+||||+..+..+||||++|++|++++.++.+++...
T Consensus       191 ~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         191 RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            999999999999999999999999999999999999998765

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=9.4e-43  Score=319.73  Aligned_cols=172  Identities=20%  Similarity=0.305  Sum_probs=152.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.       ++.+||++|++.+++.+|+.+++.   ..++.+
T Consensus        66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~  145 (340)
T PRK13536         66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS  145 (340)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence            699999999999999999         5899999999864       356999999998999999887552   233333


Q ss_pred             H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .    +++.++++.+++.  .++++.+||||||||++||+||+++|++|||||||+||||.++..++++|+++++ .|+|
T Consensus       146 ~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~t  224 (340)
T PRK13536        146 TREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKT  224 (340)
T ss_pred             HHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence            2    3356788999986  4778999999999999999999999999999999999999999999999999875 5999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ||++||++++++++||||++|++|+++..|+++++...
T Consensus       225 ilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        225 ILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            99999999999999999999999999999999998653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-43  Score=295.98  Aligned_cols=173  Identities=25%  Similarity=0.395  Sum_probs=154.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+|+||+||||+         |++|+|+++|.+.       +++||.++.+.++|..+|+++++.   .+++..
T Consensus        27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~  106 (245)
T COG4555          27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS  106 (245)
T ss_pred             cceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence            799999999999999998         6999999999764       567999998889999999998653   234433


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          ..+..++.+.|++.  .++++.+||.||||||+|||||+++|++++|||||+|||..+++.+.++++++. +.|++
T Consensus       107 ~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~  185 (245)
T COG4555         107 RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRA  185 (245)
T ss_pred             hhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcE
Confidence                24567889999985  689999999999999999999999999999999999999999999999999875 46999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      ||++||.|++++.+||||++|++|.++..|+++++.+..
T Consensus       186 viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~  224 (245)
T COG4555         186 VIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART  224 (245)
T ss_pred             EEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence            999999999999999999999999999999999887643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=8e-44  Score=324.65  Aligned_cols=177  Identities=25%  Similarity=0.372  Sum_probs=160.0

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccC--C-C
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVA--G-I   62 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~--~-~   62 (259)
                      -+||+++++||||||||||         +++|+|.++|+++      ++.+|+|+|+..+||+||+.+++ |++.  + .
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~  108 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL  108 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC
Confidence            3799999999999999999         5999999999975      57799999999999999998765 5654  1 2


Q ss_pred             CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      ..    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++||||||.++||...+.++...++++.++.|.
T Consensus       109 ~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~gi  188 (352)
T COG3842         109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI  188 (352)
T ss_pred             CHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCC
Confidence            21    3567899999986  47899999999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      |.|++|||-+++..++|||++|++|+|...|+++++......
T Consensus       189 T~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~  230 (352)
T COG3842         189 TFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT  230 (352)
T ss_pred             eEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence            999999999999999999999999999999999999876543

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.7e-43  Score=301.76  Aligned_cols=242  Identities=15%  Similarity=0.264  Sum_probs=189.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----cccEEEecccCCCCccCcHHH---HHhccCCCCH--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEK---MIFGVAGIDP--   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~---~~~~~~~~~~--   64 (259)
                      +||+.+++||||+||||.         +++|+|.|+|.++    ..+|||.|.+..+|+.+|+.+   ++..+.+.+.  
T Consensus        27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e  106 (300)
T COG4152          27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE  106 (300)
T ss_pred             CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence            799999999999999998         5899999999876    356999999999999999976   3345666654  


Q ss_pred             --HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           65 --QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        65 --~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                        +++..+|+++++.  ..+++.+||.|++|++.+..+++|+|+++|||||+|||||.+.+.+.+.+.++.. .|.|||+
T Consensus       107 ~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIif  185 (300)
T COG4152         107 IQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIF  185 (300)
T ss_pred             HHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEE
Confidence              3456799999985  5678999999999999999999999999999999999999999999999999865 6999999


Q ss_pred             EeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchHHHHHHHHHhhCCCCCcccCCCC-cee
Q 024989          141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHG-SRV  219 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  219 (259)
                      |||.|+.++++||++.+|++|+.+..|+.+++.........     ++..    +.....+...+++.......++ .++
T Consensus       186 SsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-----~ies----~~s~eeL~~ipgi~~~~~~~~G~~~i  256 (300)
T COG4152         186 SSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-----VIES----DLSLEELANIPGILKITETKDGSWRI  256 (300)
T ss_pred             ecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-----EEec----cCchHHHhcCCCceeeeeccCCceEe
Confidence            99999999999999999999999999999999875432210     0100    0000122234455444433344 232


Q ss_pred             e---CCHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989          220 T---GDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST  254 (259)
Q Consensus       220 ~---~~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~  254 (259)
                      .   ...++..-..+..+..+..|....|||+|+|+..
T Consensus       257 ~ie~e~~a~~ifq~~a~~g~i~~Fe~~~PsL~diFi~~  294 (300)
T COG4152         257 QIENETVAREIFQEVARDGYIQRFELQEPSLHDIFIEK  294 (300)
T ss_pred             ecccchHHHHHHHHHhccceeEEEeecCCCHHHHHHHH
Confidence            1   1223333334466677888999999999999864

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-43  Score=306.10  Aligned_cols=171  Identities=20%  Similarity=0.379  Sum_probs=148.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCC--CccCcHHHHHh-ccC---C-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPI--QMDVSAEKMIF-GVA---G-   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~--~~~lt~~~~~~-~~~---~-   61 (259)
                      +||+++|+||||+|||||         +++|+|.++|.+.     +..||||||...+  ...+|++++.. +.+   + 
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~  108 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW  108 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence            799999999999999999         5899999999753     2469999996643  34578888653 221   1 


Q ss_pred             ------CCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           62 ------IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        62 ------~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                            .+.+.+.++|+.+|+.  .++++++|||||+|||.|||||+.+|++|||||||+|+|+.++..++++|+++.++
T Consensus       109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e  188 (254)
T COG1121         109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE  188 (254)
T ss_pred             cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence                  1235678899999986  57899999999999999999999999999999999999999999999999999876


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       |+||+++|||++.+..+||+|+.|+ +++++.|+++++.+.
T Consensus       189 -g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~  228 (254)
T COG1121         189 -GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE  228 (254)
T ss_pred             -CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence             9999999999999999999999995 578999999998764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.9e-42  Score=312.91  Aligned_cols=243  Identities=20%  Similarity=0.297  Sum_probs=182.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.       ++.++|++|++.+++.+|+.+++.   ..++.+
T Consensus        27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~  106 (301)
T TIGR03522        27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK  106 (301)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence            799999999999999999         5899999999764       346999999998999999887653   223333


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+++.++++.+++.  .++++.+||||||||++||+||+++|++|||||||+|||+.+++.+++.|+++. + ++|
T Consensus       107 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~t  184 (301)
T TIGR03522       107 GQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKT  184 (301)
T ss_pred             HHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCE
Confidence                24567889999986  477899999999999999999999999999999999999999999999999884 3 799


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchHHHHHHHHHhhCCCCCccc-CCCC
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDK-QIHG  216 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  216 (259)
                      ||++||++++++++|||+++|++|+++..|+.+++........       +..................+..+.. ..+.
T Consensus       185 iii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (301)
T TIGR03522       185 IILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQV-------IEVEFEEQIDLQLFETLEEISSVKNTGGNT  257 (301)
T ss_pred             EEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcCCce-------EEEEecCcchhHHHhhccccceeeecCCCe
Confidence            9999999999999999999999999999999999865321110       0000000000000111111111111 1111


Q ss_pred             ceee--C---CHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989          217 SRVT--G---DPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST  254 (259)
Q Consensus       217 ~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~  254 (259)
                      ..+.  .   ...++...+...++.+.++....++|||+|+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLe~~~~~~  300 (301)
T TIGR03522       258 WKLTFETPNDTRPEIFKLAQQKGLKLISLQQNEKNLEQVFREI  300 (301)
T ss_pred             EEEEEcCccchHHHHHHHHHHCCCceEEEEeCCCCHHHHHHHh
Confidence            2221  1   134566667778999999999999999999763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=2.8e-42  Score=312.01  Aligned_cols=171  Identities=20%  Similarity=0.308  Sum_probs=150.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh--c-cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF--G-VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~--~-~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++.  . .++.+
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  108 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS  108 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence            799999999999999999         4899999999764       356999999988888889887552  1 22333


Q ss_pred             H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .    +++.++++.+++.  .++++.+||||||||++||+||+++|++|||||||+|||+.++..++++|+++++ .|.|
T Consensus       109 ~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~t  187 (303)
T TIGR01288       109 TREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKT  187 (303)
T ss_pred             HHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence            2    2356788889886  3678999999999999999999999999999999999999999999999999875 5999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||++||+++++..+||++++|++|+++..|+++++..
T Consensus       188 il~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       188 ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999999999999999999998864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.3e-43  Score=316.83  Aligned_cols=175  Identities=28%  Similarity=0.377  Sum_probs=158.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~-   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      .+++++|+|+..+||+||+++++ +++  .+.+ 
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k  107 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK  107 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence            699999999999999999         5999999999865      46899999999999999998765 444  2322 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++.+.+++.  +++++.+|||||||||+|||||+.+|+++|||||+|+||...+..+...|+++.++.|.|+
T Consensus       108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~  187 (338)
T COG3839         108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT  187 (338)
T ss_pred             HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence               35577889999996  6899999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  177 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~  177 (259)
                      |++|||..++..++|||++|++|+|...|++.++.....
T Consensus       188 IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~  226 (338)
T COG3839         188 IYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA  226 (338)
T ss_pred             EEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence            999999999999999999999999999999999987543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9e-43  Score=303.98  Aligned_cols=173  Identities=27%  Similarity=0.374  Sum_probs=151.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee---------ccccEEEecccCC--CCccCcHHHHHhccC--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE---------WRREVAFAGFEVP--IQMDVSAEKMIFGVA--   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~---------~~~~i~~v~~~~~--~~~~lt~~~~~~~~~--   60 (259)
                      +||+++|+|+||||||||         +++|.|.++|.+         +++++||++|++.  ++.....++..++..  
T Consensus        29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~  108 (235)
T COG1122          29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL  108 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc
Confidence            699999999999999999         589999999975         2577999999884  444444456777643  


Q ss_pred             CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +.+.    +++.++++.+++.  .++++.+|||||||||+||.+|+.+|++|||||||+||||.+++.++++++++.++.
T Consensus       109 g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~  188 (235)
T COG1122         109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG  188 (235)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            3443    3466788999985  578899999999999999999999999999999999999999999999999998776


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |+|||++|||++++..+|||+++|++|+++.+|++.++.+.
T Consensus       189 ~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         189 GKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             CCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            89999999999999999999999999999999999887653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.2e-43  Score=307.83  Aligned_cols=176  Identities=27%  Similarity=0.388  Sum_probs=156.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCe---ec------cccEEEecccCCCCccCcHHHHH-hccCC--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGG---EW------RREVAFAGFEVPIQMDVSAEKMI-FGVAG--   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~---~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~--   61 (259)
                      .||+++++||||||||||         +++|.|.++|.   |.      .++|||++|+..+|+.||+.+++ |++.-  
T Consensus        27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~  106 (345)
T COG1118          27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK  106 (345)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence            599999999999999999         59999999998   32      35799999999999999998655 56521  


Q ss_pred             --CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           62 --ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        62 --~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                        .+    +.++.++|+.+.+.  .++++.+|||||||||+|||||+.+|++||||||+++||...+.++..+|+++..+
T Consensus       107 ~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~  186 (345)
T COG1118         107 ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR  186 (345)
T ss_pred             cCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh
Confidence              11    24567889999886  47899999999999999999999999999999999999999999999999999887


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      .|.|.+++|||.+++.++||||++|++|+|...|+++++......
T Consensus       187 ~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s  231 (345)
T COG1118         187 LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS  231 (345)
T ss_pred             hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence            799999999999999999999999999999999999999876543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-42  Score=297.98  Aligned_cols=173  Identities=23%  Similarity=0.369  Sum_probs=152.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----------ccccEEEecccCCCCccCcHHHHH-hcc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----------WRREVAFAGFEVPIQMDVSAEKMI-FGV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----------~~~~i~~v~~~~~~~~~lt~~~~~-~~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.+           +++++||++|++++.+.+++.++. .+.  
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~  108 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG  108 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence            699999999999999999         489999999964           356799999999999999887543 221  


Q ss_pred             --------CC-CCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           60 --------AG-IDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        60 --------~~-~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                              .+ ++.   ..+-++|+++|+.  ..++..+|||||||||+|||||+++|+++|.|||+++|||.+.+.+++
T Consensus       109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~  188 (258)
T COG3638         109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD  188 (258)
T ss_pred             cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHH
Confidence                    12 223   2344678888885  357899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|++++++.|.|||++.|+++.+.++||||+-|++|+++++|+++++.+.
T Consensus       189 ~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~  238 (258)
T COG3638         189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE  238 (258)
T ss_pred             HHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence            99999999999999999999999999999999999999999999997654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.7e-42  Score=313.10  Aligned_cols=173  Identities=21%  Similarity=0.275  Sum_probs=152.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|+..+++.+|+.+++. ..  
T Consensus        30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~  109 (343)
T TIGR02314        30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  109 (343)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence            799999999999999999         5899999999864           346999999999988889877553 22  


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++
T Consensus       110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~  189 (343)
T TIGR02314       110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR  189 (343)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            23332    3456889999985  46789999999999999999999999999999999999999999999999999876


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|.|||++||+++.+.++||+|++|++|++++.|+++++...
T Consensus       190 ~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~  231 (343)
T TIGR02314       190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH  231 (343)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            699999999999999999999999999999999999998754

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-41  Score=314.67  Aligned_cols=174  Identities=22%  Similarity=0.298  Sum_probs=154.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+|+.+|+.+++. +.  .+.+.
T Consensus        29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~  108 (356)
T PRK11650         29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK  108 (356)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence            799999999999999999         4899999999865      357999999999999999987653 32  22232


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus       109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti  188 (356)
T PRK11650        109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTS  188 (356)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence                3467889999986  4788999999999999999999999999999999999999999999999999877669999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+||++++|++|+++..|+++++....
T Consensus       189 i~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        189 LYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             EEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence            99999999999999999999999999999999987643

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=3.3e-42  Score=284.61  Aligned_cols=173  Identities=24%  Similarity=0.385  Sum_probs=157.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccC-C--C-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVA-G--I-   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~-~--~-   62 (259)
                      .||.++|+||||||||||         |.+|+|.++|.+.      .+.+++++|+.++|..+|+.+++ +|+. +  . 
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~  103 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN  103 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccC
Confidence            589999999999999999         5899999999864      45689999999999999998766 4543 2  2 


Q ss_pred             --CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           63 --DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        63 --~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                        ++++++.++..+|+.  .++.+.+|||||||||+|||+|+.+-+||+||||++.|||.-+.++..++.++|.+++.|+
T Consensus       104 a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tl  183 (231)
T COG3840         104 AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL  183 (231)
T ss_pred             HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEE
Confidence              245677889999996  5788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +|+||..+++.+++|+++++++|+|.+.|+.+++...
T Consensus       184 lmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~  220 (231)
T COG3840         184 LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG  220 (231)
T ss_pred             EEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence            9999999999999999999999999999999988764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.7e-41  Score=295.73  Aligned_cols=172  Identities=20%  Similarity=0.237  Sum_probs=148.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. ..  
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~  104 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE  104 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence            799999999999999999         4899999999753           345899999988888889877542 21  


Q ss_pred             C-CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 A-GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 ~-~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      . +.+.    +++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  184 (235)
T cd03261         105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK  184 (235)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence            1 2222    3356788999985  4678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       185 ~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         185 ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             hcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            458999999999999999999999999999999999887653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-41  Score=311.77  Aligned_cols=174  Identities=24%  Similarity=0.303  Sum_probs=155.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~-   63 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++. +.  .+.+ 
T Consensus        29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~  108 (353)
T TIGR03265        29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR  108 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence            699999999999999999         4899999999865      356999999999999999987653 32  2222 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus       109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv  188 (353)
T TIGR03265       109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT  188 (353)
T ss_pred             HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence               24567899999986  4788999999999999999999999999999999999999999999999999887679999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+|||+++|++|+++..|+++++.+..
T Consensus       189 i~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       189 IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             EEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999999987643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=3.7e-41  Score=311.10  Aligned_cols=173  Identities=20%  Similarity=0.274  Sum_probs=153.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+|+.+|+.+++. +  
T Consensus        18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~   97 (363)
T TIGR01186        18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE   97 (363)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence            799999999999999999         5899999999764            346999999999999999987553 2  


Q ss_pred             cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+++.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++|||.++..+.+.+.++.+
T Consensus        98 ~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~  177 (363)
T TIGR01186        98 LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA  177 (363)
T ss_pred             HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            223332    3456789999986  4778999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+|||++|||++++..+||||++|++|+++..|+++++...
T Consensus       178 ~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~  220 (363)
T TIGR01186       178 TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN  220 (363)
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence            5699999999999999999999999999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-41  Score=310.72  Aligned_cols=174  Identities=22%  Similarity=0.295  Sum_probs=154.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~-   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|+..+|+.+|+.+++. ++  ++.+ 
T Consensus        31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~  110 (351)
T PRK11432         31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK  110 (351)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence            699999999999999999         4899999999864      367999999999999999987653 32  2322 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|+|+
T Consensus       111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti  190 (351)
T PRK11432        111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITS  190 (351)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence               23567789999985  4788999999999999999999999999999999999999999999999999877669999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+||||++|++|+++..|+++++....
T Consensus       191 i~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p  228 (351)
T PRK11432        191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP  228 (351)
T ss_pred             EEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999999987643

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-41  Score=300.77  Aligned_cols=177  Identities=19%  Similarity=0.284  Sum_probs=158.4

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH-hcc
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI-FGV   59 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~-~~~   59 (259)
                      -+||++.|+|-||||||||         +++|+|.++|.++            ++++++|+|+..++|+.|+.++. |++
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL  131 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL  131 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce
Confidence            4799999999999999999         6999999999864            35699999999999999987654 554


Q ss_pred             --CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           60 --AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        60 --~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                        .+.+.    ++..++++.+||.  .++++++|||||||||.|||||+.+|++||+|||+|+|||--+.++.+-|.++.
T Consensus       132 ev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq  211 (386)
T COG4175         132 EVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ  211 (386)
T ss_pred             eecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHH
Confidence              45553    3456788889986  578999999999999999999999999999999999999999999999999998


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      ++..+||+++|||++|+.++.|||.+|++|+|+..|+++|+......
T Consensus       212 ~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAn  258 (386)
T COG4175         212 AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPAN  258 (386)
T ss_pred             HHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccH
Confidence            88899999999999999999999999999999999999999876543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=7.2e-41  Score=308.68  Aligned_cols=174  Identities=25%  Similarity=0.343  Sum_probs=154.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA------   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~------   60 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++. +..      
T Consensus        27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~  106 (353)
T PRK10851         27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE  106 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence            799999999999999999         4899999999865      356999999999999999987653 321      


Q ss_pred             CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +.+    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.
T Consensus       107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~  186 (353)
T PRK10851        107 RPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL  186 (353)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            222    23566789999986  478899999999999999999999999999999999999999999999999988766


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |+|+|++|||++++..+||||++|++|+++..|+++++....
T Consensus       187 g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p  228 (353)
T PRK10851        187 KFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP  228 (353)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            999999999999999999999999999999999999987643

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=7.1e-41  Score=309.49  Aligned_cols=174  Identities=21%  Similarity=0.272  Sum_probs=154.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCc--eEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSS--GDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~--G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~   62 (259)
                      +||+++|+||||||||||         +++  |+|.++|.++      ++.++|++|+..+|+.+|+.+++. ++  .+.
T Consensus        30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~  109 (362)
T TIGR03258        30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM  109 (362)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence            699999999999999999         478  9999999864      356999999999999999987653 32  223


Q ss_pred             CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-C
Q 024989           63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-G  135 (259)
Q Consensus        63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~-g  135 (259)
                      +.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++. |
T Consensus       110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g  189 (362)
T TIGR03258       110 PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE  189 (362)
T ss_pred             CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence            32    3467889999986  478899999999999999999999999999999999999999999999999987654 8


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .|+|++|||++++..+||||++|++|+++..|+++++....
T Consensus       190 ~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       190 LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP  230 (362)
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            99999999999999999999999999999999999997653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=9.3e-41  Score=291.60  Aligned_cols=171  Identities=23%  Similarity=0.358  Sum_probs=147.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-ccC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GVA-   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. ... 
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  105 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG  105 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence            799999999999999999         4899999999753           235899999988888888876542 110 


Q ss_pred             ---------CC-C---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           61 ---------GI-D---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        61 ---------~~-~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                               +. .   .+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  185 (241)
T cd03256         106 RRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD  185 (241)
T ss_pred             cchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence                     11 1   23456788889885  467889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +|++++++.|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       186 ~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         186 LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            999987656899999999999999999999999999999999988764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-41  Score=286.17  Aligned_cols=172  Identities=22%  Similarity=0.245  Sum_probs=146.1

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-h
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-F   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~   57 (259)
                      ++++++++||||||||||+              -+|+|.++|+++          |+++|+|+|.++.|+ +++++++ +
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVay  110 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAY  110 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHH
Confidence            6789999999999999993              379999999863          678999999999888 7887654 4


Q ss_pred             cc--CCCCHH----HHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           58 GV--AGIDPQ----RRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        58 ~~--~~~~~~----~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      +.  ++...+    .+++.|+...|.      +++....||||||||++|||||+.+|++||||||||+|||.+..++.+
T Consensus       111 G~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe  190 (253)
T COG1117         111 GLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE  190 (253)
T ss_pred             hHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH
Confidence            43  343322    344555555553      345677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  177 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~  177 (259)
                      +|.++.+  ..||+++||+|..+.+++|+.+++..|++++.|++++++....
T Consensus       191 Li~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~  240 (253)
T COG1117         191 LITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK  240 (253)
T ss_pred             HHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence            9999863  6899999999999999999999999999999999999987544

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.3e-40  Score=309.03  Aligned_cols=174  Identities=22%  Similarity=0.306  Sum_probs=154.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|+..+|+.+|+.+++. ++  .+.+.
T Consensus        39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~  118 (375)
T PRK09452         39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA  118 (375)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence            699999999999999999         4899999999875      356999999999999999987653 32  22332


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ti  198 (375)
T PRK09452        119 AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITF  198 (375)
T ss_pred             HHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence                3456788999986  4788999999999999999999999999999999999999999999999999887679999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+||+|++|++|+++..|+++++....
T Consensus       199 I~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p  236 (375)
T PRK09452        199 VFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP  236 (375)
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            99999999999999999999999999999999987643

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=307.16  Aligned_cols=174  Identities=23%  Similarity=0.373  Sum_probs=154.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-ccC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-GVA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~~~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|+..+|+.+|+.+++. +..
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  102 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA  102 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence            799999999999999999         4899999999753            346999999999999999887653 333


Q ss_pred             CCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           61 GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        61 ~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                      ....+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.||
T Consensus       103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti  182 (352)
T PRK11144        103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI  182 (352)
T ss_pred             hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence            22345678899999986  4778999999999999999999999999999999999999999999999999876568999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+||++++|++|+++..|+++++....
T Consensus       183 i~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        183 LYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS  220 (352)
T ss_pred             EEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence            99999999999999999999999999999999987654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=8.5e-41  Score=287.14  Aligned_cols=165  Identities=27%  Similarity=0.376  Sum_probs=142.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~-   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. .  ..+.. 
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~  104 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK  104 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence            799999999999999999         4899999999764      346999999988888888876542 2  12222 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++.|.||
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti  184 (213)
T cd03259         105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT  184 (213)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence               23456788999985  3678899999999999999999999999999999999999999999999999876558999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |++||+++++..+||++++|++|+++..|
T Consensus       185 i~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         185 IYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             EEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=308.62  Aligned_cols=173  Identities=27%  Similarity=0.296  Sum_probs=152.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|+..+|+.+|+.+++. +.  .+.+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~  107 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK  107 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence            799999999999999999         4899999999864      346999999999999999887653 22  22222


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.|+
T Consensus       108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv  187 (369)
T PRK11000        108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM  187 (369)
T ss_pred             HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence                3467789999986  4778999999999999999999999999999999999999999999999999876568999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |++|||++++..+||++++|++|+++..|+++++...
T Consensus       188 I~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999999998754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2e-40  Score=289.79  Aligned_cols=172  Identities=27%  Similarity=0.354  Sum_probs=148.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCC--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGI--   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~--   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. ..  .+.  
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  106 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE  106 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence            799999999999999999         4899999999764      246999999988888888876543 21  111  


Q ss_pred             --CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           63 --DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        63 --~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                        ..    +.+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|.+++++.
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  186 (239)
T cd03296         107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL  186 (239)
T ss_pred             cCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence              21    2356788999985  467889999999999999999999999999999999999999999999999987655


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       187 ~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            8999999999999999999999999999999999888754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-40  Score=291.29  Aligned_cols=172  Identities=22%  Similarity=0.323  Sum_probs=147.9

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-ccC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GVA   60 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~~   60 (259)
                      -+||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. +..
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  105 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRL  105 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhccc
Confidence            3799999999999999999         4899999999753           345899999988888888877553 111


Q ss_pred             ----------CC-C---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           61 ----------GI-D---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        61 ----------~~-~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                                +. .   .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  185 (243)
T TIGR02315       106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM  185 (243)
T ss_pred             ccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence                      11 1   23456788889885  36788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      ++|++++++.|+|||++||+++++.++||++++|++|+++..|+++++.
T Consensus       186 ~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (243)
T TIGR02315       186 DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD  234 (243)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence            9999987655899999999999999999999999999999999988763

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-40  Score=304.84  Aligned_cols=173  Identities=25%  Similarity=0.315  Sum_probs=151.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~  109 (343)
T PRK11153         30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL  109 (343)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence            799999999999999999         4899999999753           346999999988888888877542 2  2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+||||||||++|||||+++|++|||||||+|||+.++..++++|++++++
T Consensus       110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~  189 (343)
T PRK11153        110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE  189 (343)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            23332    3456789999986  46788999999999999999999999999999999999999999999999998765


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|+|||++||+++++.++||++++|++|+++..|+++++...
T Consensus       190 ~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        190 LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            689999999999999999999999999999999999988654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.6e-40  Score=289.45  Aligned_cols=171  Identities=21%  Similarity=0.300  Sum_probs=147.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         +..++|++|++.+++.+|+.+++. ..  ..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~  104 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART  104 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence            799999999999999999         4899999999754         235899999988888889887542 11  11


Q ss_pred             C----------C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           62 I----------D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        62 ~----------~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      .          .    .+.+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  184 (236)
T cd03219         105 GSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE  184 (236)
T ss_pred             ccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            1          1    12456788889885  467889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|+++++ .|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       185 ~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         185 LIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            9999875 68999999999999999999999999999999998887643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=2.1e-40  Score=286.12  Aligned_cols=170  Identities=24%  Similarity=0.389  Sum_probs=147.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++. .  ..+.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  104 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP  104 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence            799999999999999999         4899999999753       346999999988888888876542 1  22222


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.+++++.|+|
T Consensus       105 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  184 (220)
T cd03265         105 GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT  184 (220)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCE
Confidence                23467889999985  467899999999999999999999999999999999999999999999999987655899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      ||++||+++++..+|||+++|++|+++..++++++
T Consensus       185 vi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999999999999999998877653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-40  Score=308.16  Aligned_cols=174  Identities=23%  Similarity=0.296  Sum_probs=154.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.+||++|+..+|+.+|+.+++. ++  .+.+.
T Consensus        44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~  123 (377)
T PRK11607         44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK  123 (377)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence            699999999999999999         4899999999864      457999999999999999987653 32  22222


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus       124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti  203 (377)
T PRK11607        124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC  203 (377)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence                3456788999985  4778999999999999999999999999999999999999999999999999877679999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+|||+++|++|+++..|+++++....
T Consensus       204 i~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             EEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999999987643

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.7e-40  Score=286.81  Aligned_cols=168  Identities=25%  Similarity=0.335  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh-c--cCCCC----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID----   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~----   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++   ++.++|++|++.+++.+|+.+++. .  ..+..    
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  108 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA  108 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence            799999999999999999         4899999999865   457999999988888888876542 2  22222    


Q ss_pred             HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++
T Consensus       109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~  188 (220)
T cd03293         109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV  188 (220)
T ss_pred             HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            23466789999985  3678899999999999999999999999999999999999999999999999866568999999


Q ss_pred             eCChhHHhccCCeEEEEe--CCeEEEecChh
Q 024989          142 THIFDGLENWPSHIVYVA--HGKLQLAMPMD  170 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~--~G~i~~~g~~~  170 (259)
                      ||+++++..+||++++|+  +|+++..++.+
T Consensus       189 sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         189 THDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             ecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            999999999999999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=3.5e-40  Score=286.98  Aligned_cols=171  Identities=25%  Similarity=0.336  Sum_probs=148.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~  109 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI  109 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence            799999999999999999         4899999999864           245899999988888888876542 2  1


Q ss_pred             CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+..    .+.+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~  189 (233)
T cd03258         110 AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE  189 (233)
T ss_pred             cCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH
Confidence            2222    23456789999985  36788999999999999999999999999999999999999999999999998765


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      .|+|||++||+++++..+||++++|++|+++..++.+++.
T Consensus       190 ~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (233)
T cd03258         190 LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF  229 (233)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            5899999999999999999999999999999999887764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-40  Score=305.78  Aligned_cols=173  Identities=20%  Similarity=0.295  Sum_probs=151.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+|+.+|+.+++. .  
T Consensus        53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~  132 (400)
T PRK10070         53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME  132 (400)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence            799999999999999999         5899999999763            136999999999999999887653 2  


Q ss_pred             cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus       133 ~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~  212 (400)
T PRK10070        133 LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA  212 (400)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence            223332    3456789999986  4678999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+|||++||+++++..+||++++|++|+++..|+++++...
T Consensus       213 ~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             HCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence            5689999999999999999999999999999999999988653

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=6.6e-40  Score=291.82  Aligned_cols=173  Identities=22%  Similarity=0.298  Sum_probs=149.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+++.+|+.+++. .  
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  128 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE  128 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence            799999999999999999         4899999999753            136999999988888888877553 1  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|.++++
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~  208 (269)
T cd03294         129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA  208 (269)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence            22222    23456788999985  4678999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|.|||++||+++++..+||++++|++|+++..|+++++.+.
T Consensus       209 ~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            5589999999999999999999999999999999999887653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=5.1e-40  Score=281.92  Aligned_cols=165  Identities=22%  Similarity=0.297  Sum_probs=143.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC---CC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA---GI-   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~---~~-   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. ...   .. 
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~  102 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT  102 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCcc
Confidence            799999999999999999         4899999999764      246999999988888889877653 221   11 


Q ss_pred             --CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           63 --DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        63 --~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                        ..+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|.||
T Consensus       103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti  182 (211)
T cd03298         103 AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV  182 (211)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              123467789999985  4678899999999999999999999999999999999999999999999999876568999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |++||+++++..+||++++|++|+++..|
T Consensus       183 i~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         183 LMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             EEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            99999999999999999999999997643

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.6e-40  Score=276.85  Aligned_cols=173  Identities=21%  Similarity=0.295  Sum_probs=152.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc---cCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---VAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---~~~   61 (259)
                      +||+|+++||||+||||.         +|+|+|.++|.++         +..+||+||+++.|..+|+++++..   +..
T Consensus        29 ~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~  108 (243)
T COG1137          29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE  108 (243)
T ss_pred             CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence            699999999999999998         5999999999875         2358999999999999999987642   222


Q ss_pred             CC------HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           62 ID------PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        62 ~~------~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+      ..+.+++++.|.+.  .+.+..+||||||+|+.|||||+.+|+++|||||++|+||.+..++.++++.+.. 
T Consensus       109 ~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-  187 (243)
T COG1137         109 KDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-  187 (243)
T ss_pred             cchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-
Confidence            12      12356899999986  4678889999999999999999999999999999999999999999999998864 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .|..|+|+.|+..+...+|||.++|.+|++.+.|+++++.+..
T Consensus       188 rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~  230 (243)
T COG1137         188 RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE  230 (243)
T ss_pred             CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence            6999999999999999999999999999999999999997653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=5e-40  Score=307.10  Aligned_cols=172  Identities=23%  Similarity=0.343  Sum_probs=151.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA----   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~----   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++.+|+.+++. +.+    
T Consensus        28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~  107 (402)
T PRK09536         28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS  107 (402)
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence            799999999999999999         4899999999764        356999999988888899887652 211    


Q ss_pred             --C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           61 --G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        61 --~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                        . ..   .+++.++++.+++.  .++++.+||||||||++|||||+++|++|||||||+|||+.++..++++|+++++
T Consensus       108 ~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~  187 (402)
T PRK09536        108 RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD  187 (402)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence              1 11   24567889999985  4678999999999999999999999999999999999999999999999999975


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .|+|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus       188 -~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~  229 (402)
T PRK09536        188 -DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA  229 (402)
T ss_pred             -cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence             589999999999999999999999999999999999987653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-40  Score=293.42  Aligned_cols=172  Identities=25%  Similarity=0.345  Sum_probs=147.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++. .+...|+.+++. +  .
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~  111 (287)
T PRK13637         32 DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN  111 (287)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence            799999999999999999         4899999999764          245899999863 233467776543 2  1


Q ss_pred             CCCCH----HHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           60 AGIDP----QRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      .+.+.    +++.++++.+++.    .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++
T Consensus       112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~  191 (287)
T PRK13637        112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH  191 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence            23332    3456789999984    467899999999999999999999999999999999999999999999999987


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++.|.|||++||+++++..+||||++|++|++++.|+++++..
T Consensus       192 ~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        192 KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            6569999999999999999999999999999999999998764

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=5.5e-40  Score=300.46  Aligned_cols=174  Identities=19%  Similarity=0.314  Sum_probs=150.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-cc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-GV   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~~   59 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++           ++.++|++|++  .+++.+|+.+++. .+
T Consensus        46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l  125 (331)
T PRK15079         46 EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL  125 (331)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence            799999999999999999         4899999999864           34699999997  4677888876542 11


Q ss_pred             --C--CCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           60 --A--GIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        60 --~--~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                        .  +.+.    +++.++++.+++.   .++++.+|||||+|||+||+||+.+|++||+||||+|||+.++..++++|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~  205 (331)
T PRK15079        126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ  205 (331)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence              1  2332    3356789999984   367899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      ++.++.|.|||+||||++++.++||||++|++|++++.|+.+++....
T Consensus       206 ~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~  253 (331)
T PRK15079        206 QLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP  253 (331)
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence            987666999999999999999999999999999999999999987643

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=5.1e-40  Score=281.30  Aligned_cols=164  Identities=21%  Similarity=0.309  Sum_probs=144.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. .  .++.+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  104 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK  104 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcH
Confidence            799999999999999999         4899999999764      346999999988888889887652 1  123345


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      +++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t  183 (208)
T cd03268         105 KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISS  183 (208)
T ss_pred             HHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEc
Confidence            5678899999985  4678899999999999999999999999999999999999999999999999875 589999999


Q ss_pred             CChhHHhccCCeEEEEeCCeEEEec
Q 024989          143 HIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |+++++..+||++++|++|+++..|
T Consensus       184 H~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         184 HLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.4e-40  Score=302.22  Aligned_cols=173  Identities=23%  Similarity=0.366  Sum_probs=151.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-ccC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-GVA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~~~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+|+.+|+.+++. +..
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  101 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK  101 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence            689999999999999999         4899999999754            245899999998999999887653 322


Q ss_pred             CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      ...    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.
T Consensus       102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~  181 (354)
T TIGR02142       102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF  181 (354)
T ss_pred             ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence            111    23467889999986  477899999999999999999999999999999999999999999999999987655


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |+|||++||+++++..+||++++|++|+++..|+++++...
T Consensus       182 g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (354)
T TIGR02142       182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS  222 (354)
T ss_pred             CCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence            89999999999999999999999999999999999988754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-40  Score=289.73  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=147.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh-ccCCCCHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDPQRRAE   69 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~~~~~~   69 (259)
                      +||+++|+||||||||||         +++|+|.++|.++   ++.++|++|++.+++.+|+.+++. .......+++.+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~  116 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ  116 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence            799999999999999999         4899999988754   467999999988888888887653 332212345678


Q ss_pred             HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           70 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        70 ~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||++++
T Consensus       117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~  196 (257)
T PRK11247        117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            89999985  4678899999999999999999999999999999999999999999999999866568999999999999


Q ss_pred             HhccCCeEEEEeCCeEEEecChh
Q 024989          148 LENWPSHIVYVAHGKLQLAMPMD  170 (259)
Q Consensus       148 ~~~~~drv~~l~~G~i~~~g~~~  170 (259)
                      +..+||++++|++|+++..++.+
T Consensus       197 ~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        197 AVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHhCCEEEEEECCEEEeecccc
Confidence            99999999999999999988754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=7.2e-40  Score=279.96  Aligned_cols=161  Identities=22%  Similarity=0.345  Sum_probs=138.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCC-CccCcHHHHHh-cc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPI-QMDVSAEKMIF-GV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~-~~~lt~~~~~~-~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++     ++.++|++|++.. +...|+.+++. ..  .+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~  104 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN  104 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence            799999999999999999         4899999999874     3569999998642 34567776553 21  12223


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      +++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s  183 (205)
T cd03226         105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVIT  183 (205)
T ss_pred             HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence            4677899999985  4678899999999999999999999999999999999999999999999999865 589999999


Q ss_pred             CChhHHhccCCeEEEEeCCeEE
Q 024989          143 HIFDGLENWPSHIVYVAHGKLQ  164 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~G~i~  164 (259)
                      |+++++..+||++++|++|+++
T Consensus       184 H~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         184 HDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCHHHHHHhCCEEEEEECCEEC
Confidence            9999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=2.5e-40  Score=284.75  Aligned_cols=160  Identities=22%  Similarity=0.365  Sum_probs=138.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  107 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI  107 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence            799999999999999999         4899999999753           246899999988888888876542 2  1


Q ss_pred             CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++ 
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-  186 (216)
T TIGR00960       108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-  186 (216)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-
Confidence            2222    23467789999985  4678899999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      .|.|||++||+++++..+||++++|++|++
T Consensus       187 ~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       187 RGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            589999999999999999999999999974

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-39  Score=298.27  Aligned_cols=174  Identities=17%  Similarity=0.297  Sum_probs=150.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++           ++.++|++|++  .+++.+++.+.+. . 
T Consensus        40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~  119 (327)
T PRK11308         40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL  119 (327)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence            799999999999999999         4899999999764           34699999987  4677788765442 1 


Q ss_pred             -cC-CCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 -VA-GID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 -~~-~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                       .. +..    .+++.++++.+++.   .++++++|||||||||+||+||+.+|++||+||||++||+.++..++++|.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~  199 (327)
T PRK11308        120 LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD  199 (327)
T ss_pred             HHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence             11 222    23467889999985   3678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      +.++.|.|||+||||++.+.++||||++|++|++++.|+.+++.+..
T Consensus       200 l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p  246 (327)
T PRK11308        200 LQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP  246 (327)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence            87767999999999999999999999999999999999999987643

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-40  Score=282.29  Aligned_cols=174  Identities=22%  Similarity=0.302  Sum_probs=151.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~----   59 (259)
                      +||+++|+||||+|||||         |++|+|.+.|+++         +..++.-+|.+.+|+.+|+.+++. +.    
T Consensus        29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~  108 (250)
T COG0411          29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL  108 (250)
T ss_pred             CCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence            799999999999999999         5899999999875         234666789999999999977542 10    


Q ss_pred             --------CCC--C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           60 --------AGI--D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        60 --------~~~--~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                              ...  .    .+++.++|+.++|.  .+.+.++||+|||+|+.|||||+.+|++|+||||.+||.+....++
T Consensus       109 ~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l  188 (250)
T COG0411         109 GLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL  188 (250)
T ss_pred             hhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHH
Confidence                    011  1    13456789999986  4678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .+.|+++.++.|.||++|.|||+.+..+||||+||+.|+++++|+|+++.+..
T Consensus       189 ~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp  241 (250)
T COG0411         189 AELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP  241 (250)
T ss_pred             HHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence            99999998767899999999999999999999999999999999999997653

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.1e-39  Score=281.65  Aligned_cols=170  Identities=19%  Similarity=0.272  Sum_probs=144.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c--cCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. .  ...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~  104 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR  104 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence            799999999999999999         4899999999753         245999999988888888876542 2  111


Q ss_pred             C--CHHHHHHHHHHc-CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           62 I--DPQRRAELIKVL-DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        62 ~--~~~~~~~~l~~~-~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      .  ..+++.++++.+ ++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.
T Consensus       105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~  183 (222)
T cd03224         105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGV  183 (222)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC
Confidence            1  123345677777 354  4678899999999999999999999999999999999999999999999999865 589


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      |||++||+++++..+||++++|++|+++..++.+++.
T Consensus       184 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         184 TILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             EEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            9999999999999999999999999999998877654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.9e-39  Score=288.85  Aligned_cols=172  Identities=14%  Similarity=0.202  Sum_probs=148.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. ..  
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  111 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE  111 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence            799999999999999999         4899999999753           245899999988888888876542 21  


Q ss_pred             C-CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 A-GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 ~-~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      . ..+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  191 (269)
T PRK11831        112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS  191 (269)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence            1 1222    2455688999985  4678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       192 ~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        192 ALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             hcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            558999999999999999999999999999999999988764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-39  Score=281.81  Aligned_cols=172  Identities=26%  Similarity=0.416  Sum_probs=149.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC-C--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA-G--ID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-~--~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. ... .  ..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  103 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN  103 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence            799999999999999999         4899999999864      246899999988888888877553 221 1  11


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++++.+++.  .++++.+||||||||++||+|++.+|++|||||||+|||+.+++.++++|.++.++.|+||
T Consensus       104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti  183 (232)
T PRK10771        104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL  183 (232)
T ss_pred             HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence               23467789999985  4778999999999999999999999999999999999999999999999999876558999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++++.++||++++|++|+++..|+.+++..
T Consensus       184 ii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~  219 (232)
T PRK10771        184 LMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS  219 (232)
T ss_pred             EEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999999999888764

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.4e-39  Score=282.77  Aligned_cols=171  Identities=23%  Similarity=0.332  Sum_probs=147.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c--cCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. .  ..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  104 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG  104 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence            799999999999999999         4899999999753         235899999988888888876543 1  122


Q ss_pred             CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      ..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+++++ .|
T Consensus       105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~  183 (232)
T cd03218         105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RG  183 (232)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence            22    12456788889885  4678899999999999999999999999999999999999999999999999875 58


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|||++||+++++..+||++++|++|+++..++.+++..
T Consensus       184 ~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         184 IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            999999999999999999999999999999998887643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.4e-39  Score=284.92  Aligned_cols=172  Identities=23%  Similarity=0.328  Sum_probs=148.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c--cCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++.+|+.+++. .  ..+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  105 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW  105 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence            799999999999999999         4899999999754        246899999988888888876542 1  2222


Q ss_pred             C----HHHHHHHHHHcCCCc----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           63 D----PQRRAELIKVLDIDL----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        63 ~----~~~~~~~l~~~~l~~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +    .+++.++++.+++..    ++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.
T Consensus       106 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~  185 (242)
T cd03295         106 PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL  185 (242)
T ss_pred             CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            2    234567899999863    56789999999999999999999999999999999999999999999999987645


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |.|||++||+++++..+||++++|++|+++..++++++..
T Consensus       186 g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence            8999999999999999999999999999999998887754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=8.1e-40  Score=281.83  Aligned_cols=160  Identities=28%  Similarity=0.415  Sum_probs=138.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+++.+|+.+++. .  
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  108 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL  108 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence            799999999999999999         4899999999753            245999999988888888876542 2  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~  188 (218)
T cd03255         109 LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK  188 (218)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            22222    23466789999986  3678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      +.|+|||++||+++++. +||++++|++|++
T Consensus       189 ~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         189 EAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             hcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            45899999999999997 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.1e-39  Score=271.06  Aligned_cols=164  Identities=22%  Similarity=0.316  Sum_probs=145.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +|||+-|+||||+|||||         +++|+|.++|.++           +++||+|+|+..+.++.|++++.. .  .
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v  106 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV  106 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence            799999999999999999         6999999999864           578999999999999999987653 2  2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+..+    +++.++|+.+||.  .+..+.+|||||||||+||||++++|++||.||||.+|||....++++++.++++ 
T Consensus       107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-  185 (223)
T COG2884         107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-  185 (223)
T ss_pred             cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-
Confidence            34333    4566889999985  3567899999999999999999999999999999999999999999999999986 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      .|+||+++|||.+.+..+-.|++.|++|+++.+.
T Consensus       186 ~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         186 LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            6999999999999999999999999999998754

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=9.8e-40  Score=280.34  Aligned_cols=165  Identities=25%  Similarity=0.343  Sum_probs=142.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++..|+.+++. .  ..+...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~  104 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK  104 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence            799999999999999999         4899999999764      235999999988888888876542 1  122222


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.|++++++.|.||
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv  184 (213)
T cd03301         105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT  184 (213)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence                3456788889885  4678899999999999999999999999999999999999999999999999876558999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |++||+++++..+||++++|++|++++.|
T Consensus       185 i~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         185 IYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             EEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.3e-39  Score=283.53  Aligned_cols=170  Identities=24%  Similarity=0.254  Sum_probs=145.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHHh-cc----CCCCH-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIF-GV----AGIDP-   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~~-~~----~~~~~-   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.   ...+|++|++.+++.+|+.+++. ..    ...+. 
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~   89 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS   89 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence            799999999999999999         48999999998753   23589999988888888877542 11    12222 


Q ss_pred             ---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           65 ---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        65 ---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                         +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|.+++++.|+|||
T Consensus        90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii  169 (230)
T TIGR01184        90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL  169 (230)
T ss_pred             HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence               2356788999985  46788999999999999999999999999999999999999999999999998765689999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      ++||+++++..+||++++|++|+++..|+..++
T Consensus       170 ~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             EEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            999999999999999999999999988876544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.8e-39  Score=300.12  Aligned_cols=173  Identities=20%  Similarity=0.267  Sum_probs=151.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCe----ec------------cccEEEecccCCCCccCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGG----EW------------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~----~~------------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      +||+++|+|+||||||||         +++|+|.++|+    ++            ++.++|++|++.+++.+|+.+++.
T Consensus        49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~  128 (382)
T TIGR03415        49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA  128 (382)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence            799999999999999999         58999999995    21            146999999999999899887653


Q ss_pred             -cc--CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           58 -GV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        58 -~~--~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                       +.  .+.+.    +++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+..+..+++.|.
T Consensus       129 ~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~  208 (382)
T TIGR03415       129 FGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELL  208 (382)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence             22  23332    3456789999986  467899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++.++.|+|||++|||++++.++||||++|++|+++..|+++++...
T Consensus       209 ~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       209 ELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            98765699999999999999999999999999999999999998654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-39  Score=292.64  Aligned_cols=171  Identities=26%  Similarity=0.358  Sum_probs=146.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHH-hc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMI-FG   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~-~~   58 (259)
                      +||+++|+||||||||||         +++|+|.++|+++            ++.++|++|++  .++ ..|+.+++ ++
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~  110 (290)
T PRK13634         32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFG  110 (290)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHH
Confidence            799999999999999999         4899999999764            24599999986  344 45776654 32


Q ss_pred             c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      .  .+.+.    +++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~  190 (290)
T PRK13634        111 PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK  190 (290)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            2  22232    3456789999985   3678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++++.|.|||++||+++++..+||||++|++|+++..|+++++..
T Consensus       191 l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            876569999999999999999999999999999999999988764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-39  Score=295.93  Aligned_cols=174  Identities=22%  Similarity=0.275  Sum_probs=148.5

Q ss_pred             CCcEEEEEcCCCCCcccc--------C-----CceEEEEcCeecc------------ccEEEecccC--CCCccCcHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T-----SSGDLSYLGGEWR------------REVAFAGFEV--PIQMDVSAEKM   55 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~-----~~G~I~~~G~~~~------------~~i~~v~~~~--~~~~~lt~~~~   55 (259)
                      +||+++|+|+||||||||        .     ++|+|.++|+++.            +.++|++|++  .+++.+++.+.
T Consensus        32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~  111 (326)
T PRK11022         32 QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQ  111 (326)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHH
Confidence            799999999999999999        1     6899999998641            2599999987  36777887643


Q ss_pred             Hh-c---cCCCC----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           56 IF-G---VAGID----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        56 ~~-~---~~~~~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                      +. .   ..+..    .+++.++++.+++.     .++++++|||||||||+||+||+.+|++||+||||+|||+.++..
T Consensus       112 i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~  191 (326)
T PRK11022        112 IMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ  191 (326)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence            21 1   11222    23467889999985     256889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      ++++|+++.++.|.|+|+||||++.+.++||||++|++|++++.|+.+++....
T Consensus       192 il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p  245 (326)
T PRK11022        192 IIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP  245 (326)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence            999999997767999999999999999999999999999999999999987643

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=290.22  Aligned_cols=177  Identities=24%  Similarity=0.341  Sum_probs=150.5

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec------------cccEEEecccCC--CCccCcHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW------------RREVAFAGFEVP--IQMDVSAEK   54 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~------------~~~i~~v~~~~~--~~~~lt~~~   54 (259)
                      +||+++|+|.|||||||+.              .+|+|.++|+++            .+.|++++|++.  +.|-+++.+
T Consensus        30 ~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~  109 (316)
T COG0444          30 KGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD  109 (316)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHH
Confidence            7999999999999999982              579999999843            246999999874  566677654


Q ss_pred             HH----hccCCC-C----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989           55 MI----FGVAGI-D----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  120 (259)
Q Consensus        55 ~~----~~~~~~-~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~  120 (259)
                      .+    ..-.+. .    .+++.++++.++++     .+.++++|||||+|||.||.||+.+|++||.||||++||...+
T Consensus       110 Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q  189 (316)
T COG0444         110 QIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ  189 (316)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence            32    111111 1    23466889999996     2568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989          121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS  179 (259)
Q Consensus       121 ~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~  179 (259)
                      .+++++|+++.++.|+|+|+||||+..+.++||||+||..|+|++.|+.+++.......
T Consensus       190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HP  248 (316)
T COG0444         190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHP  248 (316)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCCh
Confidence            99999999999888999999999999999999999999999999999999998765443

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=2.9e-39  Score=282.01  Aligned_cols=171  Identities=26%  Similarity=0.461  Sum_probs=147.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-------ccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-------REVAFAGFEVPIQMDVSAEKMIF-G--VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-------~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.       +.++|++|++.+++.+|+.+++. .  .++..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~  105 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS  105 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence            799999999999999999         48999999997642       46899999988878888876542 1  12222


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+.+.++++.+++.  .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.|++++++.|.|
T Consensus       106 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t  185 (236)
T TIGR03864       106 RAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS  185 (236)
T ss_pred             HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence                23456788889885  467889999999999999999999999999999999999999999999999987545899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||++||+++++.. ||++++|++|+++..++++++..
T Consensus       186 iii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~  221 (236)
T TIGR03864       186 VLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRG  221 (236)
T ss_pred             EEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence            9999999999975 99999999999999999887764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-39  Score=285.28  Aligned_cols=172  Identities=17%  Similarity=0.237  Sum_probs=147.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~----   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         +..++|++|++.+++.+|+.+++. +.    
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~  109 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL  109 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence            799999999999999999         4899999999764         124888999988888888876543 11    


Q ss_pred             --------CC---C--C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989           60 --------AG---I--D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  120 (259)
Q Consensus        60 --------~~---~--~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~  120 (259)
                              ..   .  .    .+.+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~  189 (255)
T PRK11300        110 KTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET  189 (255)
T ss_pred             cchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence                    00   0  0    12356678888885  4778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       121 ~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ..+++.|.+++++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       190 ~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        190 KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence            999999999876458999999999999999999999999999999999887754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-39  Score=295.47  Aligned_cols=174  Identities=17%  Similarity=0.275  Sum_probs=147.2

Q ss_pred             CCCcEEEEEcCCCCCccccC-------------CceEEEEcCeec------------cccEEEecccCC--CCccCcHHH
Q 024989            2 VEPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW------------RREVAFAGFEVP--IQMDVSAEK   54 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~------------~~~i~~v~~~~~--~~~~lt~~~   54 (259)
                      -+||+++|+|+||||||||.             ++|+|.++|.++            ++.++|++|++.  +++.+++.+
T Consensus        31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~  110 (330)
T PRK15093         31 TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGR  110 (330)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHH
Confidence            37999999999999999991             689999999764            135999999875  456677765


Q ss_pred             HHh-c---c--CC---CC----HHHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Q 024989           55 MIF-G---V--AG---ID----PQRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD  116 (259)
Q Consensus        55 ~~~-~---~--~~---~~----~~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD  116 (259)
                      .+. .   .  .+   ..    .+++.++++.+++..     ++++.+|||||||||+||+||+.+|++|||||||++||
T Consensus       111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD  190 (330)
T PRK15093        111 QLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAME  190 (330)
T ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCC
Confidence            432 1   1  11   01    234668899999852     56789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       117 ~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.++..++++|+++.++.|.|||+||||++++.++||||++|++|+|++.|+.+++...
T Consensus       191 ~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~  249 (330)
T PRK15093        191 PTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT  249 (330)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999998765699999999999999999999999999999999999998754

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-39  Score=281.39  Aligned_cols=172  Identities=19%  Similarity=0.212  Sum_probs=147.8

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc--CC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~   61 (259)
                      -+||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .++.+++. ..  .+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~  105 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG  105 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC
Confidence            3799999999999999999         4899999999764        346899999987775 57776543 11  12


Q ss_pred             CCHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           62 IDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        62 ~~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                      ....++.++++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++.|.||
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti  185 (241)
T PRK14250        106 EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV  185 (241)
T ss_pred             cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence            2234567789999985   3577899999999999999999999999999999999999999999999999876458999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++++..+||++++|++|+++..++++++..
T Consensus       186 i~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (241)
T PRK14250        186 IWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT  221 (241)
T ss_pred             EEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999988764

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-39  Score=287.18  Aligned_cols=172  Identities=21%  Similarity=0.334  Sum_probs=148.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC---C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA---G   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~---~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++.+|+.+++. ...   .
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  115 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHG  115 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccc
Confidence            799999999999999999         4899999999764        346999999887778888876543 211   1


Q ss_pred             ----CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           62 ----ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        62 ----~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                          ..   .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|.++++
T Consensus       116 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~  195 (265)
T PRK10575        116 ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ  195 (265)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                11   23456788999885  4678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|.|||++||+++++.++||++++|++|+++..|+.+++..
T Consensus       196 ~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            558999999999999999999999999999999999887754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=5.2e-39  Score=282.36  Aligned_cols=171  Identities=22%  Similarity=0.282  Sum_probs=147.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------------cccEEEecccCCCCccCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      +||+++|+||||||||||         +++|+|.++|.++                ++.++|++|++.+++.+|+.+++.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  107 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII  107 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence            799999999999999999         4899999998643                245899999988888888876542


Q ss_pred             -c---cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           58 -G---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        58 -~---~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                       +   ..+...    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  187 (250)
T PRK11264        108 EGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI  187 (250)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence             1   122221    3456788889885  46788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++.+ .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       188 ~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  233 (250)
T PRK11264        188 RQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA  233 (250)
T ss_pred             HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            99865 58999999999999999999999999999999999988754

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-39  Score=284.19  Aligned_cols=173  Identities=20%  Similarity=0.300  Sum_probs=149.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~   52 (259)
                      +||+++|+||||||||||         +++|+|.++|.++                     ++.++|++|++.+++..|+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  104 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV  104 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence            799999999999999999         4899999999753                     3458999999888888888


Q ss_pred             HHHHhc-c---CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           53 EKMIFG-V---AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        53 ~~~~~~-~---~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                      .+++.. .   .+..    .+.+.++++.+++.  .++.+.+|||||+||++||+||+.+|++|||||||+|||+.++..
T Consensus       105 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~  184 (252)
T TIGR03005       105 LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE  184 (252)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            765531 1   1222    13456788889885  367889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +++.|++++++.|.|||++||+++++..+|||+++|++|+++..|+.+++...
T Consensus       185 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  237 (252)
T TIGR03005       185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ  237 (252)
T ss_pred             HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999998765589999999999999999999999999999999998887643

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-39  Score=289.37  Aligned_cols=169  Identities=23%  Similarity=0.297  Sum_probs=144.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++. .+...|+.+++. +.  .+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~  109 (274)
T PRK13647         30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG  109 (274)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence            799999999999999999         4899999999764        245999999863 344567776543 21  12


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++ .|
T Consensus       110 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g  188 (274)
T PRK13647        110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QG  188 (274)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CC
Confidence            222    3456788999985  4678999999999999999999999999999999999999999999999999875 49


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      +|||++||+++++.++|||+++|++|++++.|+++++
T Consensus       189 ~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        189 KTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            9999999999999999999999999999999998654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.1e-39  Score=282.38  Aligned_cols=171  Identities=24%  Similarity=0.329  Sum_probs=147.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-cc---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-GV---   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-~~---   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++.+++.+|+.+++. ..   
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  105 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV  105 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence            799999999999999999         4899999999764          235899999988888888876542 21   


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++ 
T Consensus       106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-  184 (240)
T PRK09493        106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-  184 (240)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence            12222    3456788999885  4678899999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|+|||++||+++++..+||++++|++|+++..|+.+++.+
T Consensus       185 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (240)
T PRK09493        185 EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK  225 (240)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence            58999999999999999999999999999999999887754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.7e-39  Score=278.11  Aligned_cols=163  Identities=23%  Similarity=0.323  Sum_probs=140.5

Q ss_pred             cEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-ccCCC
Q 024989            5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-GVAGI   62 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~   62 (259)
                      |+++|+||||||||||         +++|+|.++|.+.            ++.++|++|++.+++.+|+.+++. .....
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK  103 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence            9999999999999999         4899999999753            246899999988888888876543 22111


Q ss_pred             C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           63 D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        63 ~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      .    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|++++++.|.
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  183 (214)
T cd03297         104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI  183 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence            1    23466789999985  36788999999999999999999999999999999999999999999999998765589


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |||++||+++++..+||++++|++|+++..|
T Consensus       184 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         184 PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             EEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=4.6e-39  Score=279.43  Aligned_cols=171  Identities=23%  Similarity=0.312  Sum_probs=146.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c--cCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~   61 (259)
                      +||+++|+|+||||||||         +++|+|.++|.+.         ++.++|++|++.+++.+|+.+++. .  ..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  104 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP  104 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence            799999999999999999         4899999999753         245899999988888888876542 2  122


Q ss_pred             CC-HHHHHHHHHHcC-CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           62 ID-PQRRAELIKVLD-ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        62 ~~-~~~~~~~l~~~~-l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .. .+...++++.++ +.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|.+++++.|.|
T Consensus       105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  184 (230)
T TIGR03410       105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA  184 (230)
T ss_pred             cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence            22 233466777776 33  467899999999999999999999999999999999999999999999999987545899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      ||++||+++++..+||++++|++|+++..|+.+++.
T Consensus       185 ii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       185 ILLVEQYLDFARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence            999999999999999999999999999999988773

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=2.8e-39  Score=277.71  Aligned_cols=162  Identities=20%  Similarity=0.382  Sum_probs=136.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCC--ccCcHHHHHh-ccC---C---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQ--MDVSAEKMIF-GVA---G---   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~--~~lt~~~~~~-~~~---~---   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++   ++.++|++|++.++  ..+|+.+++. ...   .   
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR  103 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence            799999999999999999         4899999999764   56799999987653  3367776543 211   0   


Q ss_pred             -CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 -ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 -~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                       ..   .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|+++++ .|
T Consensus       104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~  182 (213)
T cd03235         104 RLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EG  182 (213)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC
Confidence             11   23466788999885  4678999999999999999999999999999999999999999999999999875 58


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      .|||++||+++++.++||++++|++| +++.
T Consensus       183 ~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         183 MTILVVTHDLGLVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             CEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence            99999999999999999999999886 5544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-39  Score=292.51  Aligned_cols=171  Identities=25%  Similarity=0.390  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------------------------------cccEEEec
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------------------------------RREVAFAG   41 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------------------------------~~~i~~v~   41 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.                                ++.+||++
T Consensus        32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~  111 (305)
T PRK13651         32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF  111 (305)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence            799999999999999999         4899999987532                                34589999


Q ss_pred             ccCC-CCccCcHHHHH-hcc--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeC
Q 024989           42 FEVP-IQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE  110 (259)
Q Consensus        42 ~~~~-~~~~lt~~~~~-~~~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE  110 (259)
                      |++. .+...|+.+++ ++.  .+.+.    +++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||
T Consensus       112 Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDE  191 (305)
T PRK13651        112 QFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDE  191 (305)
T ss_pred             eCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            9752 33345777654 332  23332    3467889999985   367899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          111 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       111 Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||+|||+.++..++++|+++.+ .|.|||++|||++++.++||||++|++|++++.|+++++..
T Consensus       192 Pt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~  254 (305)
T PRK13651        192 PTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS  254 (305)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999874 59999999999999999999999999999999999998765

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4e-39  Score=277.84  Aligned_cols=168  Identities=23%  Similarity=0.324  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.       ++.++|++|++.+++.+|+.+++. .  .++..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  106 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP  106 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence            799999999999999999         4899999999864       346999999988888888876542 1  22222


Q ss_pred             H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .    +++.++++.+++.  .++++.+||+|||||++||+||+.+|++|||||||+|||+.+++.+++.|+++++  +.|
T Consensus       107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~t  184 (220)
T cd03263         107 KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRS  184 (220)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCE
Confidence            2    3456788989885  3677899999999999999999999999999999999999999999999998853  589


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      ||++||+++++..+||++++|++|+++..|+++++
T Consensus       185 ii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         185 IILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             EEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999999999999999999999999887754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-39  Score=280.83  Aligned_cols=165  Identities=22%  Similarity=0.327  Sum_probs=141.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.            +.++|++|++.+++.+|+.+++. .  
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  113 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL  113 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence            799999999999999999         48999999997641            45999999988888888876542 1  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  193 (233)
T PRK11629        114 IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR  193 (233)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            12222    23456789999985  3678899999999999999999999999999999999999999999999999865


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      +.|+|||++||+++++..+ |++++|++|+++..++
T Consensus       194 ~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        194 LQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS  228 (233)
T ss_pred             hCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence            4689999999999999885 6999999999998775

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=2.4e-39  Score=277.52  Aligned_cols=164  Identities=21%  Similarity=0.327  Sum_probs=142.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----cccEEEecccCCCCccCcHHHHHhc---cCCCC---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIFG---VAGID---   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~~---   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++    ++.++|++|++.+++.+|+.+++..   ..+..   
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  104 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE  104 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHH
Confidence            799999999999999999         4899999999764    4579999999888888888775421   22222   


Q ss_pred             -HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           64 -PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        64 -~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                       .+.+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~  183 (210)
T cd03269         105 ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVIL  183 (210)
T ss_pred             HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence             23456788999885  3677899999999999999999999999999999999999999999999999865 4899999


Q ss_pred             EeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          141 ATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      +||+++++.++||++++|++|+++..|
T Consensus       184 ~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         184 STHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             ECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            999999999999999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2.3e-39  Score=279.04  Aligned_cols=164  Identities=28%  Similarity=0.395  Sum_probs=142.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++.   ..++..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  109 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK  109 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence            699999999999999999         4899999999764       356999999988888888877542   122222


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|
T Consensus       110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t  188 (218)
T cd03266         110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKC  188 (218)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCE
Confidence                23456789999985  4678999999999999999999999999999999999999999999999999865 5899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      ||++||+++++..+||++++|++|+++..|
T Consensus       189 ii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         189 ILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             EEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            999999999999999999999999997643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-39  Score=287.94  Aligned_cols=172  Identities=19%  Similarity=0.302  Sum_probs=147.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++. .+...|+.+++. +.  .+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~  111 (279)
T PRK13650         32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG  111 (279)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence            799999999999999999         5899999999764        246899999863 566678876553 21  22


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .++    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++.|
T Consensus       112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g  191 (279)
T PRK13650        112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ  191 (279)
T ss_pred             CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            332    3457789999986  4778999999999999999999999999999999999999999999999999876559


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +|||++||+++++. +|||+++|++|+++..|+++++...
T Consensus       192 ~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        192 MTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             CEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence            99999999999995 7999999999999999999887653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=7.3e-39  Score=278.61  Aligned_cols=173  Identities=20%  Similarity=0.234  Sum_probs=146.7

Q ss_pred             CCCcEEEEEcCCCCCcccc---------C----CceEEEEcCeec------cccEEEecccCC--CCccCcHHHHHh-c-
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------T----SSGDLSYLGGEW------RREVAFAGFEVP--IQMDVSAEKMIF-G-   58 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~----~~G~I~~~G~~~------~~~i~~v~~~~~--~~~~lt~~~~~~-~-   58 (259)
                      -+||+++|+||||||||||         +    ++|+|.++|.++      ++.++|++|++.  +++.+|+.+++. . 
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~   89 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETL   89 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHH
Confidence            3799999999999999999         4    799999999764      246999999874  445677765432 1 


Q ss_pred             -cCCC-C---HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           59 -VAGI-D---PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        59 -~~~~-~---~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                       ..+. .   .+++.++++.+++.     .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~  169 (230)
T TIGR02770        90 RSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR  169 (230)
T ss_pred             HHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence             1121 1   23467889999885     356789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       170 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  215 (230)
T TIGR02770       170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY  215 (230)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9876558999999999999999999999999999999999988764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-39  Score=285.34  Aligned_cols=172  Identities=20%  Similarity=0.314  Sum_probs=148.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-C--C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-A--G   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~--~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++.+++.+++. .. .  .
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~  111 (265)
T PRK10253         32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP  111 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence            799999999999999999         4799999999764        245899999988888888877653 21 1  0


Q ss_pred             ----CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           62 ----ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        62 ----~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                          ..   .+++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~  191 (265)
T PRK10253        112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR  191 (265)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence                11   13456788989885  4778999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       192 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (265)
T PRK10253        192 EKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT  233 (265)
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence            558999999999999999999999999999999999887754

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-39  Score=280.39  Aligned_cols=171  Identities=21%  Similarity=0.284  Sum_probs=147.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc---cC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---VA-   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---~~-   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++..   .. 
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~  107 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD  107 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence            799999999999999999         4899999999753         3469999999888888888765432   11 


Q ss_pred             CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      ..+    ...+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++.+ .
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~  186 (241)
T PRK10895        108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S  186 (241)
T ss_pred             ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c
Confidence            122    13456788988885  3678899999999999999999999999999999999999999999999998764 5


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |.|||++||+++++..+||++++|++|+++..++++++..
T Consensus       187 g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            8999999999999999999999999999999999887754

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=6.5e-39  Score=293.31  Aligned_cols=174  Identities=20%  Similarity=0.257  Sum_probs=148.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CC---ceEEEEcCeecc------------ccEEEecccC--CCCccCcHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TS---SGDLSYLGGEWR------------REVAFAGFEV--PIQMDVSAEKMI   56 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~---~G~I~~~G~~~~------------~~i~~v~~~~--~~~~~lt~~~~~   56 (259)
                      +||+++|+|+||||||||         ++   +|+|.++|.++.            +.++|++|++  .+++.+++.+.+
T Consensus        41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i  120 (330)
T PRK09473         41 AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQL  120 (330)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHH
Confidence            799999999999999999         23   999999998641            3699999997  467778876543


Q ss_pred             h-c--cC-CCCH----HHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           57 F-G--VA-GIDP----QRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        57 ~-~--~~-~~~~----~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      . .  .. +.+.    +++.++++.+++..     ++++++|||||+|||+||+||+.+|++||+||||++||+.++..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i  200 (330)
T PRK09473        121 MEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI  200 (330)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH
Confidence            2 1  11 2232    34567888888852     457899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      +++|+++.++.|.|+|+||||++.+.++||||++|++|++++.|+.+++....
T Consensus       201 ~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p  253 (330)
T PRK09473        201 MTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP  253 (330)
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            99999997766999999999999999999999999999999999999987643

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.7e-39  Score=275.65  Aligned_cols=166  Identities=27%  Similarity=0.415  Sum_probs=143.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC-C-C--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA-G-I--   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-~-~--   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. ... . .  
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~  102 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN  102 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCcc
Confidence            799999999999999999         4899999999864      346999999988888888876542 221 1 1  


Q ss_pred             --CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           63 --DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        63 --~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                        ..+++.++++.+++.  .++++.+||||||||++||+||+.+|+++||||||+|||+.++..++++|.++.++.|.||
T Consensus       103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti  182 (213)
T TIGR01277       103 AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTL  182 (213)
T ss_pred             HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              123456789999985  4678899999999999999999999999999999999999999999999999876558999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      |++||+++++..+||++++|++|++++.|+
T Consensus       183 i~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       183 LMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             EEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            999999999999999999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=7.3e-39  Score=276.39  Aligned_cols=161  Identities=20%  Similarity=0.314  Sum_probs=138.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------c-ccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------R-REVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~-~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           + +.++|++|++.+++.+|+.+++. .  
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  109 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL  109 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence            799999999999999999         4899999999753           1 45999999988888888876542 1  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      .....    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~  189 (221)
T TIGR02211       110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR  189 (221)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence            11222    23456789999985  4678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEE
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  164 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~  164 (259)
                      +.|.|||++||+++++.. ||++++|++|+++
T Consensus       190 ~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       190 ELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             hcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            558999999999999876 7999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=6.8e-39  Score=283.14  Aligned_cols=171  Identities=22%  Similarity=0.332  Sum_probs=148.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~   52 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++                     ++.++|++|++.+++.+++
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv  109 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV  109 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence            799999999999999999         4899999999753                     2458999999888888888


Q ss_pred             HHHHh-c---cCCCC----HHHHHHHHHHcCCC--c-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989           53 EKMIF-G---VAGID----PQRRAELIKVLDID--L-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  121 (259)
Q Consensus        53 ~~~~~-~---~~~~~----~~~~~~~l~~~~l~--~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~  121 (259)
                      .+++. +   .....    .+++.++++.+++.  . ++++.+||||||||++|||||+.+|++|||||||+|||+.+++
T Consensus       110 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  189 (257)
T PRK10619        110 LENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG  189 (257)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            76542 1   12222    23456789999985  2 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .++++|+++.+ .|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       190 ~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  241 (257)
T PRK10619        190 EVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG  241 (257)
T ss_pred             HHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence            99999999865 59999999999999999999999999999999999888754

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=7.3e-39  Score=280.15  Aligned_cols=170  Identities=15%  Similarity=0.209  Sum_probs=146.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc-cC---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG-VA---   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~-~~---   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++.. ..   
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~  106 (242)
T TIGR03411        27 PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK  106 (242)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence            799999999999999999         4899999999754         1359999999888888898765421 11   


Q ss_pred             -------CC----CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           61 -------GI----DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        61 -------~~----~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                             +.    ..+++.++++.+++.  .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..++++|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l  186 (242)
T TIGR03411       107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL  186 (242)
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH
Confidence                   01    123456788988885  36788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++.+  ++|||++||+++++.++||++++|++|+++..++.+++..
T Consensus       187 ~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       187 KSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             HHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            99853  6899999999999999999999999999999999887753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.6e-39  Score=288.12  Aligned_cols=170  Identities=22%  Similarity=0.291  Sum_probs=145.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHH-hc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMI-FG   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~-~~   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++  .++. .|+.+++ ++
T Consensus        31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~  109 (288)
T PRK13643         31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFG  109 (288)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhH
Confidence            799999999999999999         5899999999763            24589999976  4444 4776544 32


Q ss_pred             c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      .  .+.+.    +++.++++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~  189 (288)
T PRK13643        110 PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES  189 (288)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            2  22332    3456788889984   3678899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++ .|.|||++|||++++..+||||++|++|+++..|+++++..
T Consensus       190 l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        190 IHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             HHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            875 59999999999999999999999999999999999998864

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-38  Score=282.40  Aligned_cols=172  Identities=25%  Similarity=0.358  Sum_probs=147.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc--CCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.        ++.++|++|++.+++.+|+.+++. ..  ...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  106 (258)
T PRK13548         27 PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL  106 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence            799999999999999999         4899999999753        245899999988777788877653 21  111


Q ss_pred             C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           63 D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        63 ~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .    .+.+.++++.+++.  .++.+.+||||||||++||+||+      .+|++|||||||+|||+.++..+.++|+++
T Consensus       107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  186 (258)
T PRK13548        107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL  186 (258)
T ss_pred             CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            1    23456788999885  46789999999999999999999      599999999999999999999999999998


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       187 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        187 AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             HHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence            74468999999999999999999999999999999999887754

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-39  Score=280.90  Aligned_cols=170  Identities=25%  Similarity=0.353  Sum_probs=147.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------------cccEEEecccCCCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------------RREVAFAGFEVPIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------------~~~i~~v~~~~~~~~~lt~~~~~~-~   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++              ++.++|++|++.+++.+|+.+++. .
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~  106 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA  106 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence            799999999999999999         4899999999753              245899999988888888877653 1


Q ss_pred             ---cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 ---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 ---~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                         ..+..    .+++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~  186 (242)
T PRK11124        107 PCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE  186 (242)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence               12222    23456788888885  4678899999999999999999999999999999999999999999999998


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +.+ .|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       187 ~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        187 LAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            864 5899999999999999999999999999999999887764

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-39  Score=287.87  Aligned_cols=171  Identities=18%  Similarity=0.274  Sum_probs=145.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHH-hc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMI-FG   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~-~~   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++  .++. .|+.+++ ++
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~  110 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG  110 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence            699999999999999999         4899999999754            34689999986  3443 4676554 22


Q ss_pred             c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      .  .+.+.    +++.++++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~  190 (286)
T PRK13646        111 PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS  190 (286)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            1  12232    3456788899985   2568999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.++.|.|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       191 l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             HHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            876569999999999999999999999999999999999988764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=5e-39  Score=305.04  Aligned_cols=175  Identities=27%  Similarity=0.395  Sum_probs=151.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee----------ccccEEEecccC--CCCccCcHHHHHhc---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE----------WRREVAFAGFEV--PIQMDVSAEKMIFG---   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~----------~~~~i~~v~~~~--~~~~~lt~~~~~~~---   58 (259)
                      +||+++|+|.||||||||         +++|+|.++|.+          .++++-+++|++  .+++.+|+.+.+..   
T Consensus       316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~  395 (539)
T COG1123         316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR  395 (539)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence            799999999999999999         589999999976          134556666655  57888998876532   


Q ss_pred             cCC-C--C--HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           59 VAG-I--D--PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        59 ~~~-~--~--~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+. .  .  .+++.++++.++++   .++++++||||||||++|||||+.+|++||+||||+.||+..+..+.++|+++
T Consensus       396 ~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l  475 (539)
T COG1123         396 IHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL  475 (539)
T ss_pred             hhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            111 1  1  23467889999996   47899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  177 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~  177 (259)
                      .++.|.|.|+||||+..+..+||||++|++|+|++.|+.+++++...
T Consensus       476 q~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~  522 (539)
T COG1123         476 QEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQ  522 (539)
T ss_pred             HHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCC
Confidence            99889999999999999999999999999999999999999887543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-38  Score=286.16  Aligned_cols=171  Identities=23%  Similarity=0.329  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCC-CCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVP-IQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~-~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++. .+..+|+.+++. + 
T Consensus        32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~  111 (287)
T PRK13641         32 EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP  111 (287)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence            799999999999999999         4899999999754            235899999863 222567776543 2 


Q ss_pred             -cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           59 -VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        59 -~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                       ..+...    +++.++++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l  191 (287)
T PRK13641        112 KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY  191 (287)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence             122222    3457789999985   36789999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++ .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       192 ~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        192 QK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             Hh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            64 59999999999999999999999999999999999988754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=3.4e-39  Score=277.19  Aligned_cols=159  Identities=23%  Similarity=0.330  Sum_probs=137.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV  106 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence            799999999999999999         4899999999753           246899999988888888876542 1  1


Q ss_pred             CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ 
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-  185 (214)
T TIGR02673       107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-  185 (214)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence            2222    23456789999985  3667899999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      .|+|||++||+++++..+||++++|++|+
T Consensus       186 ~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       186 RGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            58999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.3e-38  Score=275.49  Aligned_cols=168  Identities=24%  Similarity=0.404  Sum_probs=147.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----cccEEEecccCCCCccCcHHHHHh---ccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIF---GVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~~~~   66 (259)
                      +||+++|+||||||||||         +++|+|.++|.++    .+.++|++|++.+++.+|+.+++.   ...+.+.++
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~  104 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR  104 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence            799999999999999999         4899999999764    246899999988888888876542   122334556


Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +.++++.+++.  .++++.+|||||+||++||+|++.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+
T Consensus       105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~  183 (223)
T TIGR03740       105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHI  183 (223)
T ss_pred             HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence            78899999986  4677899999999999999999999999999999999999999999999999865 58999999999


Q ss_pred             hhHHhccCCeEEEEeCCeEEEecChhH
Q 024989          145 FDGLENWPSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i~~~g~~~~  171 (259)
                      ++++.++|||+++|++|+++..|++.+
T Consensus       184 ~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       184 LSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            999999999999999999999988754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-39  Score=282.38  Aligned_cols=167  Identities=23%  Similarity=0.325  Sum_probs=143.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHHh-c--cCCCC----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIF-G--VAGID----   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~----   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.   ..++|++|++.+++.+|+.+++. .  ..+..    
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  105 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR  105 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH
Confidence            799999999999999999         48999999998752   45899999988888888876543 2  12222    


Q ss_pred             HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++
T Consensus       106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv  185 (255)
T PRK11248        106 LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI  185 (255)
T ss_pred             HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            23467789999985  3678899999999999999999999999999999999999999999999999865568999999


Q ss_pred             eCChhHHhccCCeEEEEe--CCeEEEecCh
Q 024989          142 THIFDGLENWPSHIVYVA--HGKLQLAMPM  169 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~--~G~i~~~g~~  169 (259)
                      ||+++++..+||++++|+  +|+++..++.
T Consensus       186 sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        186 THDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             eCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999998  5999988764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-39  Score=279.57  Aligned_cols=171  Identities=20%  Similarity=0.259  Sum_probs=145.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. ..  ..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  109 (237)
T PRK11614         30 QGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE  109 (237)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence            799999999999999999         4899999999753         245999999988888888876553 21  11


Q ss_pred             CC--HHHHHHHHHHc-CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           62 ID--PQRRAELIKVL-DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        62 ~~--~~~~~~~l~~~-~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      ..  .+.+.++++.+ ++.  .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.
T Consensus       110 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~  188 (237)
T PRK11614        110 RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGM  188 (237)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCC
Confidence            11  12345566766 353  3567899999999999999999999999999999999999999999999999865 589


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |||++||+++++.++|||+++|++|+++..|+++++..
T Consensus       189 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        189 TIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             EEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            99999999999999999999999999999999988754

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.1e-38  Score=282.66  Aligned_cols=170  Identities=22%  Similarity=0.293  Sum_probs=146.7

Q ss_pred             CCcEEEEEcCCCCCccccC---------C---ceEEEEcCeec-------------cccEEEecccCCCCccCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S---SGDLSYLGGEW-------------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~---~G~I~~~G~~~-------------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      +||+++|+||||||||||.         +   +|+|.++|.++             ++.++|++|++.+++.+|+.+++.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~  108 (262)
T PRK09984         29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVL  108 (262)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence            7999999999999999992         3   59999999754             235899999988888888877653


Q ss_pred             -ccC----------C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989           58 -GVA----------G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  120 (259)
Q Consensus        58 -~~~----------~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~  120 (259)
                       ...          . ..   .+++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  188 (262)
T PRK09984        109 IGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA  188 (262)
T ss_pred             hhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHH
Confidence             211          0 01   23456789999985  4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       121 ~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      ..+++.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++
T Consensus       189 ~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            9999999998765689999999999999999999999999999999999886

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-38  Score=285.82  Aligned_cols=172  Identities=26%  Similarity=0.308  Sum_probs=147.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+|+||||||||         +++|+|.++|.+.          ++.++|++|++. .+...|+.+++. +.  
T Consensus        31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~  110 (283)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN  110 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence            799999999999999999         4899999999764          245899999863 234567776553 21  


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++
T Consensus       111 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~  190 (283)
T PRK13636        111 LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE  190 (283)
T ss_pred             cCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            22222    3456788999985  47789999999999999999999999999999999999999999999999998765


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|.|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus       191 ~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        191 LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            58999999999999999999999999999999999988765

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=5.8e-39  Score=275.17  Aligned_cols=159  Identities=29%  Similarity=0.394  Sum_probs=135.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-c--cCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-G--VAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~--~~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++. .++.+|+.+++. .  ..+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~  105 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG  105 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence            799999999999999999         4899999999753        346899999864 355678776542 1  122


Q ss_pred             CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      ..    .+++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |
T Consensus       106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~  184 (211)
T cd03225         106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-G  184 (211)
T ss_pred             CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-C
Confidence            22    23456788999985  46789999999999999999999999999999999999999999999999998764 8


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      .|||++||+++++..+||++++|++|+
T Consensus       185 ~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         185 KTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=8.8e-39  Score=277.12  Aligned_cols=166  Identities=23%  Similarity=0.274  Sum_probs=141.0

Q ss_pred             CCcEEEEEcCCCCCcccc-------C-------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL-------T-------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-------~-------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||       .       ++|+|.++|.++          ++.++|++|++.++ .+|+.+++. 
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~  103 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY  103 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence            799999999999999998       2       589999999763          24589999998777 788876542 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCCc--ccc--CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDIDL--SWR--MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~~--~~~--~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                      .  ..+. .    .+++.++++.+++..  +++  +.+||||||||++||+||+.+|++|||||||+|||+.++..+++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  183 (227)
T cd03260         104 GLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL  183 (227)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            1  1221 1    234567889999852  445  599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~  171 (259)
                      |+++++ . .|||++||+++++..+||++++|++|+++..|++++
T Consensus       184 l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         184 IAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             HHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence            999865 4 899999999999999999999999999999888764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.4e-38  Score=276.12  Aligned_cols=163  Identities=23%  Similarity=0.280  Sum_probs=139.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.            +.++|++|++.+++.+|+.+++. .  
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~  114 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL  114 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence            799999999999999999         48999999997541            35999999988888888876542 1  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  194 (228)
T PRK10584        115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR  194 (228)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            12222    23466789999985  3678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      +.|.|||++||+++++.. ||++++|++|++++.
T Consensus       195 ~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~  227 (228)
T PRK10584        195 EHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE  227 (228)
T ss_pred             hcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence            568999999999999865 999999999998753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.2e-38  Score=282.99  Aligned_cols=172  Identities=24%  Similarity=0.387  Sum_probs=147.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++  .+++.+|+.+++. . 
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~  115 (265)
T TIGR02769        36 EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL  115 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence            799999999999999999         4899999999753           24599999986  3556678876542 1 


Q ss_pred             --cCCCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 --VAGID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 --~~~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                        .....    .+++.++++.+++.   .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~  195 (265)
T TIGR02769       116 RHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK  195 (265)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              11222    23466789999984   3678899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       196 ~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             HHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence            876558999999999999999999999999999999999988864

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.8e-38  Score=274.78  Aligned_cols=165  Identities=25%  Similarity=0.350  Sum_probs=138.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++  .+++.+|+.+++. . 
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~  109 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL  109 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence            799999999999999999         4899999999753           24689999987  3556788876542 1 


Q ss_pred             -cCCC--CHH---H-HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           59 -VAGI--DPQ---R-RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        59 -~~~~--~~~---~-~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                       ..+.  ..+   . ..++++.+++.   .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  189 (228)
T cd03257         110 RIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK  189 (228)
T ss_pred             HhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence             1111  111   1 13678888884   367889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      +++++.|.|||++||+++++..+||++++|++|+++..|
T Consensus       190 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         190 KLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            987655899999999999999999999999999997653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-38  Score=280.62  Aligned_cols=171  Identities=22%  Similarity=0.322  Sum_probs=147.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-----   59 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++        ++.++|++|+..+++.+|+.+++. +.     
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~  106 (255)
T PRK11231         27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLS  106 (255)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhh
Confidence            799999999999999999         4899999999763        245999999988777788876542 21     


Q ss_pred             -CCC-C---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 -AGI-D---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 -~~~-~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                       .+. .   .+++.++++.+++.  .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++.+
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~  186 (255)
T PRK11231        107 LWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT  186 (255)
T ss_pred             hccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence             111 1   23456788888885  4778999999999999999999999999999999999999999999999999865


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       .|+|||++||+++++.++||++++|++|+++..|+.+++..
T Consensus       187 -~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  227 (255)
T PRK11231        187 -QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT  227 (255)
T ss_pred             -CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence             58999999999999999999999999999999999887754

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-38  Score=284.19  Aligned_cols=172  Identities=23%  Similarity=0.317  Sum_probs=146.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------ccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------REVAFAGFEVP-IQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++.        +.++|++|++. .+...|+.+++. ..  .+
T Consensus        29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~  108 (277)
T PRK13652         29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG  108 (277)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence            799999999999999999         58999999997642        35899999864 233567776543 21  12


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++.++.|
T Consensus       109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g  188 (277)
T PRK13652        109 LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG  188 (277)
T ss_pred             CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            332    2356788999985  4678999999999999999999999999999999999999999999999999876558


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus       189 ~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        189 MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             CEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            999999999999999999999999999999999988764

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.9e-38  Score=274.38  Aligned_cols=162  Identities=23%  Similarity=0.293  Sum_probs=139.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII  106 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence            799999999999999999         4899999999753           246899999988778888876542 2  1


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++ 
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-  185 (222)
T PRK10908        107 AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-  185 (222)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-
Confidence            22222    2356788999885  3678899999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEE
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQL  165 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~  165 (259)
                      .|.|||++||+++++..+||++++|++|+++.
T Consensus       186 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        186 VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            48999999999999999999999999999865

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-38  Score=278.21  Aligned_cols=169  Identities=23%  Similarity=0.257  Sum_probs=144.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CC-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TS-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||         ++     +|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~  104 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAY  104 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHh
Confidence            799999999999999999         36     99999999764          245999999988877 88776543 


Q ss_pred             c--cCC-CCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAG-IDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~-~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+ .+.    +.+.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  184 (247)
T TIGR00972       105 GPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE  184 (247)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            2  222 121    3456788888885      25678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++|+++++  +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       185 ~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (247)
T TIGR00972       185 ELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT  232 (247)
T ss_pred             HHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999864  4899999999999999999999999999999999888754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=7e-39  Score=275.04  Aligned_cols=160  Identities=22%  Similarity=0.335  Sum_probs=137.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~  105 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV  105 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence            799999999999999999         4899999999753           245899999988888888876542 1  1


Q ss_pred             CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+..    .+++.++++.+++.  .++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|+++.+ 
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-  184 (214)
T cd03292         106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-  184 (214)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-
Confidence            2222    23456788888885  3678899999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      .|+|||++||+++++..+||++++|++|++
T Consensus       185 ~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         185 AGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            589999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=2.2e-38  Score=281.67  Aligned_cols=173  Identities=16%  Similarity=0.284  Sum_probs=146.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC--CCccCcHHHHHh-c--cC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP--IQMDVSAEKMIF-G--VA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~--~~~~lt~~~~~~-~--~~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.        ++.++|++|++.  +++.+++.+++. .  ..
T Consensus        38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~  117 (267)
T PRK15112         38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN  117 (267)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence            799999999999999999         4899999999764        235899999864  455667665442 1  11


Q ss_pred             -CCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           61 -GID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        61 -~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                       ...    .+.+.++++.+++.   .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  197 (267)
T PRK15112        118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE  197 (267)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence             122    13456789999984   3567899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|.|||++||+++++..+||++++|++|+++..|+++++.+.
T Consensus       198 ~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  240 (267)
T PRK15112        198 KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS  240 (267)
T ss_pred             HcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence            5589999999999999999999999999999999999887653

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.5e-38  Score=290.36  Aligned_cols=167  Identities=23%  Similarity=0.324  Sum_probs=146.4

Q ss_pred             EEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH----HH
Q 024989            9 VLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP----QR   66 (259)
Q Consensus         9 i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~----~~   66 (259)
                      |+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++. +.  .+...    ++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            689999999999         4899999999764      346999999998999999887653 22  22222    34


Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.|||++||+
T Consensus        81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187        81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            56789999986  4778999999999999999999999999999999999999999999999999876669999999999


Q ss_pred             hhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++++..+||++++|++|+++..|+++++...
T Consensus       161 ~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~  191 (325)
T TIGR01187       161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE  191 (325)
T ss_pred             HHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.5e-38  Score=272.72  Aligned_cols=162  Identities=25%  Similarity=0.378  Sum_probs=139.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~   63 (259)
                      +| +++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++. .  ..+.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  103 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP  103 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence            46 999999999999999         4899999999754       356999999988888888876542 1  12222


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+.+.++++.+++.  .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++  +.|
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~t  181 (211)
T cd03264         104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRI  181 (211)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCE
Confidence                23456788999885  4678899999999999999999999999999999999999999999999999863  589


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      ||++||+++++.++|||+++|++|+++..|
T Consensus       182 ii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         182 VILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             EEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999999999999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-39  Score=280.92  Aligned_cols=173  Identities=21%  Similarity=0.362  Sum_probs=157.7

Q ss_pred             CC-cEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHH-Hhcc
Q 024989            3 EP-EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKM-IFGV   59 (259)
Q Consensus         3 ~~-e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~-~~~~   59 (259)
                      +| .+++|.|+||||||||         ++.|.|.++|.-+            ++++|||+|+..+|+++|+..+ .+++
T Consensus        22 p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~  101 (352)
T COG4148          22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM  101 (352)
T ss_pred             CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence            44 7899999999999999         5999999999642            4679999999999999999754 4665


Q ss_pred             CCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           60 AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        60 ~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .......++++.+.+|+.  +++++.+|||||||||+|+|||+..|++|+||||.+.||...+++++-+|.++.++...-
T Consensus       102 ~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IP  181 (352)
T COG4148         102 WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP  181 (352)
T ss_pred             cccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCC
Confidence            544566788999999996  589999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |+++||.++|+.++||+|++|++|++.+.|+.+++...
T Consensus       182 IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~  219 (352)
T COG4148         182 ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS  219 (352)
T ss_pred             EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence            99999999999999999999999999999999998764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-39  Score=264.79  Aligned_cols=175  Identities=21%  Similarity=0.332  Sum_probs=152.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~   52 (259)
                      +|++++|+|.|||||||+         |+.|.|.++|+.+                     +.+.++++|..+++..+|+
T Consensus        31 ~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv  110 (256)
T COG4598          31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV  110 (256)
T ss_pred             CCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence            699999999999999999         5899999999753                     2246889999999999998


Q ss_pred             HHHHhc----cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           53 EKMIFG----VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        53 ~~~~~~----~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                      .++...    .-+.+.    ++++.+|..+|+.  .+.++..||||||||++|||||+.+|+++++||||++|||+-.-+
T Consensus       111 LeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgE  190 (256)
T COG4598         111 LENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE  190 (256)
T ss_pred             HHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHH
Confidence            765432    113332    4456789999986  356899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      +++.++++++ .|.|.+++||.|.++.+++.+|++|++|.|-+.|+|++++.....
T Consensus       191 VLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S  245 (256)
T COG4598         191 VLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS  245 (256)
T ss_pred             HHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCC
Confidence            9999999986 599999999999999999999999999999999999999876443

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-38  Score=283.38  Aligned_cols=171  Identities=22%  Similarity=0.351  Sum_probs=146.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|+++        ++.++|++|++. ++...|+.+++. ..  .+
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~  111 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG  111 (279)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence            799999999999999999         4899999999864        346899999873 566678876553 21  22


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|
T Consensus       112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~  191 (279)
T PRK13635        112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG  191 (279)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence            222    3467788888885  4678999999999999999999999999999999999999999999999999876558


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|||++||+++++.. ||++++|++|++++.|+.+++..
T Consensus       192 ~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        192 ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999975 99999999999999999888754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=5.4e-38  Score=277.09  Aligned_cols=173  Identities=18%  Similarity=0.231  Sum_probs=146.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------C----CceEEEEcCeec------cccEEEecccCC--CCccCcHHHHHh---c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T----SSGDLSYLGGEW------RREVAFAGFEVP--IQMDVSAEKMIF---G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~----~~G~I~~~G~~~------~~~i~~v~~~~~--~~~~lt~~~~~~---~   58 (259)
                      +||+++|+|+||||||||         +    ++|+|.++|.++      ++.++|++|++.  +.+.+++.++..   .
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~  107 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL  107 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence            799999999999999999         4    789999999864      246999999874  334456554321   1


Q ss_pred             cCCC--CHHHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           59 VAGI--DPQRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        59 ~~~~--~~~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ..+.  ..+++.++++.+++..     ++.+.+||||||||++|||||+.+|++|||||||+|||+.++..++++|++++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~  187 (254)
T PRK10418        108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV  187 (254)
T ss_pred             HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence            1122  2345678899999853     56789999999999999999999999999999999999999999999999987


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++.|.|||++||+++++..+||++++|++|+++..++++++...
T Consensus       188 ~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  231 (254)
T PRK10418        188 QKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA  231 (254)
T ss_pred             HhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            65689999999999999999999999999999999999888653

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=9.3e-39  Score=274.12  Aligned_cols=160  Identities=24%  Similarity=0.343  Sum_probs=138.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-c---c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-G---V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-~---~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++.+++.+|+.+++. .   .
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~  104 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV  104 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence            799999999999999999         4899999999754          245899999988888888876542 1   1


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ 
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-  183 (213)
T cd03262         105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-  183 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-
Confidence            22222    3456788888885  4678899999999999999999999999999999999999999999999999875 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      .|+|||++||+++++.++||++++|++|++
T Consensus       184 ~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         184 EGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            589999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-38  Score=261.20  Aligned_cols=162  Identities=23%  Similarity=0.286  Sum_probs=144.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh---c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF---G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~---~   58 (259)
                      .||.++|+||||||||||         +++|+|.+.|+++            .+++|||+|...+.+++|..|+..   .
T Consensus        35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle  114 (228)
T COG4181          35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE  114 (228)
T ss_pred             CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence            699999999999999999         5899999999864            356999999999999999877653   2


Q ss_pred             cCCC----CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGI----DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~----~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      +.+.    ......++++.+|+.  +.+++.+||||+||||+|||||+..|++|+.||||.+||-.+-+++.+++..+++
T Consensus       115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr  194 (228)
T COG4181         115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR  194 (228)
T ss_pred             hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence            2231    124467899999996  5789999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEE
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  165 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~  165 (259)
                      +.|+|.+++|||...+.+ |+|++-|.+|+++.
T Consensus       195 e~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~  226 (228)
T COG4181         195 ERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE  226 (228)
T ss_pred             hcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence            999999999999998877 99999999999975

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4e-38  Score=273.00  Aligned_cols=171  Identities=19%  Similarity=0.252  Sum_probs=144.4

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCc--cCcHHHHHh-cc------C
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQM--DVSAEKMIF-GV------A   60 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~--~lt~~~~~~-~~------~   60 (259)
                      -+||+++|+|+||||||||         +++|+|.++|++.   ++.++|++|++.++.  .+|+.+++. +.      .
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~   83 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL   83 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence            3799999999999999999         4899999999864   456999999876533  366766542 21      1


Q ss_pred             C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      . ..   .+++.++++.+++.  .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|+++++ .
T Consensus        84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~  162 (223)
T TIGR03771        84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-A  162 (223)
T ss_pred             cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c
Confidence            1 11   23466788999885  3678899999999999999999999999999999999999999999999999865 5


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |.|||++||+++++.++||+++++ +|+++..|+.+++.+
T Consensus       163 ~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       163 GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            999999999999999999999999 899999999888754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-38  Score=282.16  Aligned_cols=171  Identities=21%  Similarity=0.308  Sum_probs=143.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCC-CccCcHHHHH-hc--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPI-QMDVSAEKMI-FG--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~-~~~lt~~~~~-~~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++.. +...++.+++ +.  .
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~  105 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN  105 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence            699999999999999999         4899999999764          2458999998653 2334555433 21  1


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+...    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++ 
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-  184 (271)
T PRK13638        106 LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-  184 (271)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence            22222    2345788888885  4678899999999999999999999999999999999999999999999999875 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       185 ~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        185 QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            58999999999999999999999999999999999888754

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=6.6e-38  Score=273.55  Aligned_cols=172  Identities=26%  Similarity=0.358  Sum_probs=148.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~-   63 (259)
                      +||.++|+|+||||||||         +++|+|.++|.+.      ++.++|++|++.+++.+|+.+++. .  ..+.+ 
T Consensus        24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~  103 (235)
T cd03299          24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK  103 (235)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence            799999999999999999         4899999999764      346999999988888888876543 2  22222 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+.+.++++.+++.  .++++.+|||||+||++||+||+.+|++++|||||+|||+.+++.+++.|++++.+.|.||
T Consensus       104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti  183 (235)
T cd03299         104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV  183 (235)
T ss_pred             HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence               13456788889885  4678999999999999999999999999999999999999999999999999876558999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++++..+||++++|++|+++..++.+++.+
T Consensus       184 li~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  219 (235)
T cd03299         184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK  219 (235)
T ss_pred             EEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            999999999999999999999999999999887754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-38  Score=278.13  Aligned_cols=171  Identities=23%  Similarity=0.337  Sum_probs=146.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-----   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++.+|+.+++. +.     
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  105 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRS  105 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhh
Confidence            799999999999999999         4899999999764        235899999887777788876542 21     


Q ss_pred             -CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 -AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 -~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                       ....    .+++.++++.+++.  .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.++|+++.+
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  185 (256)
T TIGR03873       106 LWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA  185 (256)
T ss_pred             hccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence             1111    12456788888885  4678999999999999999999999999999999999999999999999999864


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       .|.|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus       186 -~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       186 -TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             -cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence             58999999999999999999999999999999999887754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-38  Score=276.15  Aligned_cols=170  Identities=21%  Similarity=0.215  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++        ++.++|++|++.+++.+|+.+++. + 
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~  107 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGL  107 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHH
Confidence            7999999999999999991              489999999754        346999999988788888876552 2 


Q ss_pred             -cCCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 -VAGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 -~~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                       ....  .    .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~  187 (250)
T PRK14247        108 KLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES  187 (250)
T ss_pred             HhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence             1111  1    13456788888873      356789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|+++. + |.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus       188 ~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14247        188 LFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT  234 (250)
T ss_pred             HHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence            999874 3 7999999999999999999999999999999999988764

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=9.3e-38  Score=271.97  Aligned_cols=172  Identities=27%  Similarity=0.348  Sum_probs=148.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~-   63 (259)
                      +||+++|+|+||||||||         +++|+|.++|.+.      ++.++|++|++.++..+|+.+++. .  ..+.+ 
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~  104 (232)
T cd03300          25 EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK  104 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence            689999999999999999         4899999999764      346899999988888888876542 2  22222 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++++.+++.  .++.+.+||+||+||++||+||+.+|+++||||||+|||+.++..+++.|+++.++.|.||
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti  184 (232)
T cd03300         105 AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF  184 (232)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence               23456788999985  4678899999999999999999999999999999999999999999999999876458999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++++.++||++++|++|+++..++.+++..
T Consensus       185 ii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~  220 (232)
T cd03300         185 VFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE  220 (232)
T ss_pred             EEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence            999999999999999999999999999998877654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=3.1e-38  Score=279.07  Aligned_cols=173  Identities=24%  Similarity=0.321  Sum_probs=144.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----c------------cccEEEecccCC--CCccCcHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----W------------RREVAFAGFEVP--IQMDVSAEK   54 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----~------------~~~i~~v~~~~~--~~~~lt~~~   54 (259)
                      +||+++|+||||||||||         +++|+|.++|.+     +            ++.++|++|++.  +++.+++.+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~  110 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGG  110 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHH
Confidence            799999999999999999         489999999976     3            235899999864  455566654


Q ss_pred             HHh-c---cCCCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           55 MIF-G---VAGID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        55 ~~~-~---~~~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      .+. .   ....+    .+.+.++++.+++.   .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l  190 (258)
T PRK11701        111 NIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL  190 (258)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            331 1   11111    23456788999884   3578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus       191 ~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  242 (258)
T PRK11701        191 LDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD  242 (258)
T ss_pred             HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999998765589999999999999999999999999999999999887643

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=4.6e-38  Score=274.89  Aligned_cols=170  Identities=20%  Similarity=0.230  Sum_probs=142.9

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc---c
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---~   59 (259)
                      +||+++|+||||||||||           +++|+|.++|.+.         +..++|++|++.+++.+|+.+++..   .
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~  104 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA  104 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence            799999999999999999           2689999999753         1238899999888888888765421   1


Q ss_pred             -CC------CC----HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           60 -AG------ID----PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        60 -~~------~~----~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                       ..      .+    .+++.++++.+++.   .++++. +||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  184 (243)
T TIGR01978       105 RRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA  184 (243)
T ss_pred             hhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence             10      11    13456788889885   255666 59999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      ++|+++.+ .|.|||++||+++++..+ ||++++|++|+++..|+++++.
T Consensus       185 ~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       185 EGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             HHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            99999865 589999999999999998 8999999999999999887543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-38  Score=285.97  Aligned_cols=170  Identities=20%  Similarity=0.249  Sum_probs=144.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------------------cccEEEecccC--CCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------------------RREVAFAGFEV--PIQ   47 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------------------~~~i~~v~~~~--~~~   47 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++                        ++.++|++|++  .++
T Consensus        51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~  130 (320)
T PRK13631         51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF  130 (320)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence            799999999999999999         4899999998542                        24589999986  344


Q ss_pred             ccCcHHHHH-hcc--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989           48 MDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  117 (259)
Q Consensus        48 ~~lt~~~~~-~~~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~  117 (259)
                      . .|+.+++ ++.  .+.+.    +++.++++.+++.   .++.+.+||||||||++|||||+.+|++|||||||+|||+
T Consensus       131 ~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~  209 (320)
T PRK13631        131 K-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP  209 (320)
T ss_pred             c-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence            4 4776654 332  12222    3456788999985   3678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          118 LARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       118 ~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .++..+++.|.++.+ +|.|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       210 ~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  265 (320)
T PRK13631        210 KGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT  265 (320)
T ss_pred             HHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999998865 59999999999999999999999999999999999998765

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-38  Score=280.82  Aligned_cols=170  Identities=22%  Similarity=0.285  Sum_probs=144.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCC-CccCcHHHHHh-c--cC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPI-QMDVSAEKMIF-G--VA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~-~~~lt~~~~~~-~--~~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.. +...|+.+++. .  ..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~  106 (274)
T PRK13644         27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL  106 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence            799999999999999999         4899999999764         2358999998753 55677776542 2  11


Q ss_pred             CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +.+.    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ .
T Consensus       107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~  185 (274)
T PRK13644        107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K  185 (274)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C
Confidence            2222    3456788889885  4678999999999999999999999999999999999999999999999999865 5


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |.|||++||+++++. .||++++|++|+++..|+++++..
T Consensus       186 g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        186 GKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             CCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999995 599999999999999999988754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-38  Score=269.12  Aligned_cols=173  Identities=20%  Similarity=0.270  Sum_probs=150.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~   63 (259)
                      +||+++|+|+||+|||||         +.+|+|.++|+++         +..++||||...+|+.+|++|++. +.+...
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~  107 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR  107 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence            799999999999999999         3799999999986         345999999999999999998763 322111


Q ss_pred             ----HHH-HHHHHHHcC-CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           64 ----PQR-RAELIKVLD-ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        64 ----~~~-~~~~l~~~~-l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                          .+. .+++.+.|- +.  .+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+++++.|++++++.|
T Consensus       108 ~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g  187 (237)
T COG0410         108 DKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG  187 (237)
T ss_pred             ccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC
Confidence                111 556666663 21  3667899999999999999999999999999999999999999999999999987668


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +||+++.++...+.+++||.++|.+|+++.+|+.+++...
T Consensus       188 ~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         188 MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence            9999999999999999999999999999999999998764

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=9.8e-38  Score=274.71  Aligned_cols=171  Identities=22%  Similarity=0.340  Sum_probs=146.2

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc-c-CCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG-V-AGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~-~-~~~~-   63 (259)
                      +||+++|+||||||||||        +.+|+|.++|+++        ++.++|++|++.+++.+|+.+++.. . ...+ 
T Consensus        21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~  100 (248)
T PRK03695         21 AGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRT  100 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCc
Confidence            799999999999999999        3699999999864        2358999998877777888775532 1 1112 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc-------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-------PFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~-------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                         .+++.++++.+++.  .++++.+||||||||++||+||+.       +|++|||||||+|||+.++..+.++|++++
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~  180 (248)
T PRK03695        101 EAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC  180 (248)
T ss_pred             HHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence               23467889999985  367899999999999999999997       679999999999999999999999999986


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      + .|.|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus       181 ~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        181 Q-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             h-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence            5 58999999999999999999999999999999998887643

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-38  Score=281.09  Aligned_cols=171  Identities=25%  Similarity=0.333  Sum_probs=145.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++. .+...|+.+++. +.  
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~  106 (275)
T PRK13639         27 KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN  106 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence            799999999999999999         4799999999764          245899999863 333457776542 21  


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+...    +++.++++.+++.  .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..++++|.++++ 
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-  185 (275)
T PRK13639        107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-  185 (275)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-
Confidence            12221    3456788999985  4678999999999999999999999999999999999999999999999999875 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|.|||++||+++++..+||++++|++|++++.|+++++..
T Consensus       186 ~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        186 EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            48999999999999999999999999999999999988754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-38  Score=279.55  Aligned_cols=170  Identities=23%  Similarity=0.311  Sum_probs=143.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~~-~   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++  .++. .|+.+++. .
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~  110 (280)
T PRK13649         32 DGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFG  110 (280)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHH
Confidence            799999999999999999         4899999999753            24589999986  3443 57766542 2


Q ss_pred             --cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 --VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 --~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                        ..+.+.    +.+.++++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|++
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (280)
T PRK13649        111 PQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK  190 (280)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              122222    2346788888885   3678899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++ .|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       191 ~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        191 LHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             HHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            865 48999999999999999999999999999999999888754

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7e-38  Score=280.64  Aligned_cols=171  Identities=18%  Similarity=0.220  Sum_probs=145.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCc---eEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSS---GDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~---G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++   |+|.++|.++        ++.++|++|++. .++..|+.+++. .  
T Consensus        32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~  111 (282)
T PRK13640         32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE  111 (282)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHH
Confidence            799999999999999999         355   9999999864        246899999874 566778877553 2  


Q ss_pred             cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+.+.    +++.++++.+++.  .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~  191 (282)
T PRK13640        112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK  191 (282)
T ss_pred             hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence            122333    3356788999986  4778999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+|||++||+++++. +|||+++|++|++++.|+++++..
T Consensus       192 ~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        192 KNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             hcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence            55899999999999995 799999999999999999988754

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-38  Score=310.20  Aligned_cols=173  Identities=22%  Similarity=0.298  Sum_probs=150.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++           ++.++|++|++  .+++.+|+.+++. . 
T Consensus       349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~  428 (623)
T PRK10261        349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL  428 (623)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence            799999999999999999         4899999999753           34699999986  4777888876542 1 


Q ss_pred             -cCCC-CH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 -VAGI-DP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 -~~~~-~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                       ..+. ..    +++.++++.+++.   .++++++|||||||||+||+||+.+|++|||||||+|||+.++..++++|++
T Consensus       429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~  508 (623)
T PRK10261        429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD  508 (623)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence             1221 21    3466889999994   3678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++++.|.|||++|||++++..+||||++|++|++++.|+++++...
T Consensus       509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~  554 (623)
T PRK10261        509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN  554 (623)
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence            8776699999999999999999999999999999999999998653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=275.09  Aligned_cols=169  Identities=18%  Similarity=0.196  Sum_probs=143.7

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++ +|+.+++. 
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~  115 (258)
T PRK14268         37 KNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAY  115 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHH
Confidence            7999999999999999992              599999999753          245899999887776 78776542 


Q ss_pred             c--cCCCCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           58 G--VAGIDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        58 ~--~~~~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      .  ..+.+.    +++.++++.+++.      .++++.+|||||+|||+|||||+.+|++|||||||+|||+.++..+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  195 (258)
T PRK14268        116 GPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED  195 (258)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH
Confidence            2  122222    2356788888872      356789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|+++. + |+|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus       196 ~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  242 (258)
T PRK14268        196 LIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH  242 (258)
T ss_pred             HHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999884 3 7999999999999999999999999999999999988764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6e-38  Score=281.82  Aligned_cols=172  Identities=20%  Similarity=0.245  Sum_probs=143.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------------cccEEEecccCCC-CccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------------RREVAFAGFEVPI-QMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------------~~~i~~v~~~~~~-~~~lt~~~~~~-~   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++             ++.++|++|++.. +...|+.+++. .
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  115 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG  115 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence            699999999999999999         4899999999653             2358999998632 22347765442 2


Q ss_pred             c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      .  .+...    +++.++++.+++.   .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  195 (289)
T PRK13645        116 PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER  195 (289)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1  12222    2355788888883   3678899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.++.|+|||++||+++++.++||++++|++|+++..|+++++..
T Consensus       196 ~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (289)
T PRK13645        196 LNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS  240 (289)
T ss_pred             HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            876558999999999999999999999999999999999887754

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=4.5e-38  Score=298.55  Aligned_cols=176  Identities=23%  Similarity=0.340  Sum_probs=149.9

Q ss_pred             CCcEEEEEcCCCCCccccC-------------CceEEEEcCeec------------cccEEEecccCC--CCccCcHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW------------RREVAFAGFEVP--IQMDVSAEKM   55 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~------------~~~i~~v~~~~~--~~~~lt~~~~   55 (259)
                      +||+++|+|.|||||||+.             ++|+|.++|.++            .+.|+|++|++.  +.|-+|+.+.
T Consensus        34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Q  113 (539)
T COG1123          34 PGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ  113 (539)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHH
Confidence            7999999999999999992             489999999753            256999999874  4555776543


Q ss_pred             Hhc---cCC-CC----HHHHHHHHHHcCCC--c--cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           56 IFG---VAG-ID----PQRRAELIKVLDID--L--SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        56 ~~~---~~~-~~----~~~~~~~l~~~~l~--~--~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      +..   .++ .+    .+++.++++.++++  .  ++++++|||||||||.||+||+.+|++||+||||++||+..+.++
T Consensus       114 i~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qI  193 (539)
T COG1123         114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQI  193 (539)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence            321   111 11    24456788999985  2  248999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      +++|++++++.|+++|+||||+..+.++||||+||++|++++.|+++++......
T Consensus       194 L~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h  248 (539)
T COG1123         194 LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH  248 (539)
T ss_pred             HHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCC
Confidence            9999999988999999999999999999999999999999999999999876543

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-38  Score=275.27  Aligned_cols=170  Identities=25%  Similarity=0.272  Sum_probs=144.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||         +     ++|+|.++|.++          ++.++|++|++.+++.+|+.+++. 
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~  108 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAI  108 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHH
Confidence            799999999999999999         2     389999999754          245899999988888888876543 


Q ss_pred             cc--CCC--CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           58 GV--AGI--DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        58 ~~--~~~--~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      ..  .+.  ..    +++.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l  188 (253)
T PRK14267        109 GVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI  188 (253)
T ss_pred             HHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence            21  121  21    2356778888863      3567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++.|+++. + ++|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       189 ~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (253)
T PRK14267        189 EELLFELK-K-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE  237 (253)
T ss_pred             HHHHHHHh-h-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999985 3 6899999999999999999999999999999999988764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.5e-37  Score=329.31  Aligned_cols=249  Identities=14%  Similarity=0.177  Sum_probs=183.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|+++       ++.+||++|...+++.+|+++++.   ..++.+
T Consensus      1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257      1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence            799999999999999999         5899999999875       356999999999999999987652   233433


Q ss_pred             H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .    +.++++++.+++.  .++++++|||||||||+||+||+.+|++|||||||+||||.+++.+++.|+++++ .|+|
T Consensus      2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~T 2122 (2272)
T TIGR01257      2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRA 2122 (2272)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence            2    2345788999985  4788999999999999999999999999999999999999999999999999865 4999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchH-----HHHHHHHHh-hCCCCCcc
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDE-----ERKRRRERK-ASGLPEFD  211 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~  211 (259)
                      ||++||++++++.+|||+++|++|++++.|+++++.........  +...+......     ......... .++.. ..
T Consensus      2123 IILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~--l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~-~~ 2199 (2272)
T TIGR01257      2123 VVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYI--VTMKIKSPKDDLLPDLNPVEQFFQGNFPGSV-QR 2199 (2272)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceE--EEEEEcCcchhhhhHHHHHHHHHhhcCccce-ee
Confidence            99999999999999999999999999999999998765331100  00000000000     000000010 11110 00


Q ss_pred             cCCCC-ceee---CCHHHHHHHHHhC--CccccceEecCCChhhhhhccC
Q 024989          212 KQIHG-SRVT---GDPAQAAVRVMNN--GWAAGRLHSTVAGEENFVLSTN  255 (259)
Q Consensus       212 ~~~~~-~~~~---~~~~~~~~~l~~~--~~~~~~~~~~~~~LEd~f~~~~  255 (259)
                      ..... ..+.   ....++...+..+  ++.+.++....++|||+|++-.
T Consensus      2200 e~~~~~l~~~i~~~~~~~if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~ 2249 (2272)
T TIGR01257      2200 ERHYNMLQFQVSSSSLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFA 2249 (2272)
T ss_pred             ccccceEEEEeCcccHHHHHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHh
Confidence            11111 1111   2345566656544  5888999999999999999753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-38  Score=279.76  Aligned_cols=171  Identities=23%  Similarity=0.297  Sum_probs=144.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCC-CccCcHHHHH-hcc--C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPI-QMDVSAEKMI-FGV--A   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~-~~~lt~~~~~-~~~--~   60 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++         ++.++|++|++.. +...++.+++ ++.  .
T Consensus        35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~  114 (280)
T PRK13633         35 KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL  114 (280)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence            699999999999999999         4899999999754         2458999998642 2235666544 221  1


Q ss_pred             CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +.+    .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.
T Consensus       115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~  194 (280)
T PRK13633        115 GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY  194 (280)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            222    23456788999985  467899999999999999999999999999999999999999999999999987656


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |.|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus       195 g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~  233 (280)
T PRK13633        195 GITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK  233 (280)
T ss_pred             CCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999986 99999999999999999988764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.3e-38  Score=278.19  Aligned_cols=171  Identities=22%  Similarity=0.295  Sum_probs=145.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++. .++.+|+.+++. ..  .+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~  113 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK  113 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence            799999999999999999         4899999999764        345899999864 566678876543 21  12


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .+.    +.+.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|++++++.+
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~  193 (271)
T PRK13632        114 VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK  193 (271)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            222    2356788999985  4778999999999999999999999999999999999999999999999999876445


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|||++||+++++. +||++++|++|+++..|+.+++..
T Consensus       194 ~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        194 KTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             cEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence            99999999999986 799999999999999998887654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=274.64  Aligned_cols=170  Identities=22%  Similarity=0.248  Sum_probs=143.3

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|+++          ++.++|++|++.+++ .|+.+++. 
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~  109 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAY  109 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHH
Confidence            7999999999999999992              589999999754          246999999987776 47766542 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +  ..+. .    .+++.++++.+++.      .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  189 (253)
T PRK14242        110 GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE  189 (253)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            2  1221 1    23456778888873      25678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++|+++. + |.|||++||+++++.++||++++|++|+++..|+++++...
T Consensus       190 ~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  238 (253)
T PRK14242        190 ELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR  238 (253)
T ss_pred             HHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence            9999984 3 78999999999999999999999999999999998887643

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=1.1e-37  Score=275.06  Aligned_cols=168  Identities=16%  Similarity=0.252  Sum_probs=143.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccC--cHHHHHhccCCCCHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDV--SAEKMIFGVAGIDPQRRAELI   71 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~l--t~~~~~~~~~~~~~~~~~~~l   71 (259)
                      +||+++|+||||||||||         +++|+|.++|.   ..++|++|++.+++.+  ++.+++....+...+++.+++
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  105 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL  105 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc---cCEEEeccccccccccChhHHHHHhccccccHHHHHHHH
Confidence            799999999999999999         48999999873   4699999987766553  455543222223345677889


Q ss_pred             HHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           72 KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        72 ~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      +.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||+++++.
T Consensus       106 ~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~  185 (251)
T PRK09544        106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM  185 (251)
T ss_pred             HHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            999985  467899999999999999999999999999999999999999999999999987655899999999999999


Q ss_pred             ccCCeEEEEeCCeEEEecChhHHHH
Q 024989          150 NWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       150 ~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .+||++++|++ +++..|+++++..
T Consensus       186 ~~~d~i~~l~~-~i~~~g~~~~~~~  209 (251)
T PRK09544        186 AKTDEVLCLNH-HICCSGTPEVVSL  209 (251)
T ss_pred             HhCCEEEEECC-ceEeeCCHHHHhC
Confidence            99999999965 7999999888754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=5.6e-38  Score=301.56  Aligned_cols=171  Identities=20%  Similarity=0.316  Sum_probs=148.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--C-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--A-   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~-   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. +.  . 
T Consensus        29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  108 (501)
T PRK10762         29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN  108 (501)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence            799999999999999999         4899999999764         245999999988888899887653 21  1 


Q ss_pred             --C-CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           61 --G-IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        61 --~-~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                        + .+.    +++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++.
T Consensus       109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~  188 (501)
T PRK10762        109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK  188 (501)
T ss_pred             ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence              1 122    3456789999985  467899999999999999999999999999999999999999999999999986


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      + .|.|||++|||++++..+||++++|++|+++..++++++..
T Consensus       189 ~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (501)
T PRK10762        189 S-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE  230 (501)
T ss_pred             H-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence            5 58999999999999999999999999999999998877643

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1e-37  Score=300.42  Aligned_cols=171  Identities=20%  Similarity=0.300  Sum_probs=149.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-ccCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GVAGI-   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~~~~-   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.         +.++|++|++.+++.+|+.+++. ..... 
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  115 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ  115 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence            799999999999999999         48999999997641         35899999988888899887653 22211 


Q ss_pred             -CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           63 -DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        63 -~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                       ..+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|+|||
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii  194 (510)
T PRK15439        116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIV  194 (510)
T ss_pred             HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence             124567889999985  4678999999999999999999999999999999999999999999999999865 599999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++|||++++..+||++++|++|+++..|+++++..
T Consensus       195 ivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        195 FISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence            99999999999999999999999999999988754

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.2e-37  Score=272.22  Aligned_cols=165  Identities=26%  Similarity=0.433  Sum_probs=139.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEec-ccCCCCccCcHHHHHh---ccCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAG-FEVPIQMDVSAEKMIF---GVAGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~-~~~~~~~~lt~~~~~~---~~~~~   62 (259)
                      +||+++|+|+||||||||         +++|+|.++|.+.       ++.++|++ |.+.+++.+|+.+++.   ...+.
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~  125 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL  125 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence            799999999999999999         4899999999753       34689987 4456677788876542   22232


Q ss_pred             CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      ..    +++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.++|.+++++.|.
T Consensus       126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  205 (236)
T cd03267         126 PPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT  205 (236)
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence            22    2356788888885  46788999999999999999999999999999999999999999999999998765589


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |||++||+++++..+||++++|++|++++.|
T Consensus       206 tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         206 TVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             EEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999999999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=274.23  Aligned_cols=170  Identities=21%  Similarity=0.238  Sum_probs=143.2

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.++. +|+.+++. 
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~  110 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISY  110 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHH
Confidence            7999999999999999992              389999999753          345999999987774 78876542 


Q ss_pred             cc--CCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +.  .+. .    .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  190 (254)
T PRK14273        111 GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE  190 (254)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH
Confidence            21  121 2    13355677877762      36678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|++++ + +.|||++||+++++..+|||+++|++|+++..|+++++...
T Consensus       191 ~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  239 (254)
T PRK14273        191 ELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN  239 (254)
T ss_pred             HHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999984 3 78999999999999999999999999999999999887653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-37  Score=276.34  Aligned_cols=171  Identities=23%  Similarity=0.308  Sum_probs=144.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHH-hcc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMI-FGV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~-~~~--~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++. .++..++.+++ +..  .+
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~  113 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA  113 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence            799999999999999999         4899999999764        346899999874 55666665433 221  12


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      ...    +++.++++.+++.  .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~  193 (269)
T PRK13648        114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN  193 (269)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            222    3456788989885  4678899999999999999999999999999999999999999999999999876558


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus       194 ~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~  231 (269)
T PRK13648        194 ITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD  231 (269)
T ss_pred             CEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999986 99999999999999999888754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=8.4e-38  Score=302.15  Aligned_cols=172  Identities=17%  Similarity=0.281  Sum_probs=148.1

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-cc-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-GV-   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~~-   59 (259)
                      +||+++|+||||||||||        +++|+|.++|.++           ++.++|++|++  .+++.+|+.+++. +. 
T Consensus       311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~  390 (529)
T PRK15134        311 PGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLR  390 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHH
Confidence            799999999999999999        4799999999653           24589999986  3677788876542 21 


Q ss_pred             -CC--CC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           60 -AG--ID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        60 -~~--~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                       ++  .+    .+++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++
T Consensus       391 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        391 VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence             11  22    13456789999985   3678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++++.|+|||++|||++++..+||++++|++|++++.|+++++.+
T Consensus       471 ~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  515 (529)
T PRK15134        471 LQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA  515 (529)
T ss_pred             HHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence            876568999999999999999999999999999999999988865

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-37  Score=274.31  Aligned_cols=169  Identities=20%  Similarity=0.202  Sum_probs=143.8

Q ss_pred             CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||        .      ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~  116 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAF  116 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhh
Confidence            799999999999999999        1      589999999764          346999999987776 67776542 


Q ss_pred             cc--C-CCCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--A-GIDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~-~~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      ..  . +.+.    +++.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  196 (260)
T PRK10744        117 GVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIE  196 (260)
T ss_pred             hHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHH
Confidence            21  1 2222    3456788888873      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+++. + +.|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus       197 ~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  244 (260)
T PRK10744        197 ELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT  244 (260)
T ss_pred             HHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999984 3 7899999999999999999999999999999999988765

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=272.73  Aligned_cols=169  Identities=19%  Similarity=0.222  Sum_probs=144.1

Q ss_pred             CCcEEEEEcCCCCCcccc------------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL------------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL------------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||            +++|+|.++|+++        ++.++|++|++.+++ .|+.+++. .  .
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~  105 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKL  105 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhh
Confidence            699999999999999999            1699999999864        346999999988776 57776542 2  1


Q ss_pred             CCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           60 AGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        60 ~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                      .+.  .    .+++.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l  185 (246)
T PRK14269        106 HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL  185 (246)
T ss_pred             cCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            221  1    12356788998883      35678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .++. + |+|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus       186 ~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  230 (246)
T PRK14269        186 KELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE  230 (246)
T ss_pred             HHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence            9874 3 8999999999999999999999999999999999988764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.8e-37  Score=273.24  Aligned_cols=172  Identities=23%  Similarity=0.313  Sum_probs=142.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----c------------cccEEEecccCC--CCccCcHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----W------------RREVAFAGFEVP--IQMDVSAEK   54 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----~------------~~~i~~v~~~~~--~~~~lt~~~   54 (259)
                      +||+++|+||||||||||         +++|+|.++|.+     +            ++.++|++|++.  +++.+++.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~  107 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGA  107 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHH
Confidence            799999999999999999         489999999865     2            134899998864  334455544


Q ss_pred             HHh----ccCC--C--CHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           55 MIF----GVAG--I--DPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        55 ~~~----~~~~--~--~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      .+.    ....  .  ..+.+.++++.+++.   .++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+
T Consensus       108 ~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l  187 (253)
T TIGR02323       108 NIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL  187 (253)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence            321    1111  1  123466789999984   3568899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++|++++++.|.|||++||+++++..+||++++|++|+++..++++++..
T Consensus       188 ~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~  238 (253)
T TIGR02323       188 LDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD  238 (253)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence            999999876568999999999999999999999999999999999888764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-37  Score=270.60  Aligned_cols=173  Identities=26%  Similarity=0.337  Sum_probs=148.6

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGID   63 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~   63 (259)
                      -+||+++|+||||||||||         +++|+|.++|.+.      ++.++|++|++.+++..|+.+++. ..  .+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~  103 (237)
T TIGR00968        24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP  103 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence            3799999999999999999         4899999999764      246899999988888888876553 11  1222


Q ss_pred             ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                          .+.+.++++.+++.  .++.+.+||+||+||++||+||+.+|+++||||||+|||+.++..++++|.+++++.|+|
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~t  183 (237)
T TIGR00968       104 KAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT  183 (237)
T ss_pred             HHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence                23456788888885  367789999999999999999999999999999999999999999999999986544899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||++||+++++.++||++++|++|+++..++.+++..
T Consensus       184 vli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             EEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence            9999999999999999999999999999999888764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.2e-37  Score=300.51  Aligned_cols=172  Identities=22%  Similarity=0.295  Sum_probs=146.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEc-Cee--------------ccccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYL-GGE--------------WRREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~-G~~--------------~~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||         +++|+|.++ |.+              .++.++|++|++.+++.+|+.+++. 
T Consensus       309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  388 (520)
T TIGR03269       309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE  388 (520)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHH
Confidence            799999999999999999         489999996 531              1345999999988888888877553 


Q ss_pred             cc-CCCC----HHHHHHHHHHcCCC-------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           58 GV-AGID----PQRRAELIKVLDID-------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        58 ~~-~~~~----~~~~~~~l~~~~l~-------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      .. ....    .+++.++++.+++.       .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus       389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~  468 (520)
T TIGR03269       389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH  468 (520)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            11 0112    13456789999985       257899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|++++++.|.|||++|||++++.++||++++|++|+++..|+++++.+
T Consensus       469 ~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999876568999999999999999999999999999999998887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-37  Score=276.56  Aligned_cols=171  Identities=19%  Similarity=0.264  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~   61 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++        ++.++|++|++. .+...|+.+++. +.  .+
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~  111 (277)
T PRK13642         32 KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG  111 (277)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence            799999999999999999         4899999999764        345899999864 456677776543 21  12


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      ...    +++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g  191 (277)
T PRK13642        112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ  191 (277)
T ss_pred             CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            222    2356788888885  4678899999999999999999999999999999999999999999999999876559


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|||++||+++++. .||++++|++|+++..|+++++..
T Consensus       192 ~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  229 (277)
T PRK13642        192 LTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFA  229 (277)
T ss_pred             CEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999997 599999999999999999988764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.1e-38  Score=300.64  Aligned_cols=171  Identities=16%  Similarity=0.270  Sum_probs=148.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~----   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. +.    
T Consensus        30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  109 (510)
T PRK09700         30 PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK  109 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence            799999999999999999         4899999999764         235999999988888889877553 21    


Q ss_pred             --CCC---C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           60 --AGI---D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        60 --~~~---~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                        .+.   +    .+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  189 (510)
T PRK09700        110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN  189 (510)
T ss_pred             ccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence              111   1    13456788999985  467899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++++ .|+|||++|||++++..+||++++|++|+++..|+++++..
T Consensus       190 ~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (510)
T PRK09700        190 QLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN  234 (510)
T ss_pred             HHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence            9875 59999999999999999999999999999999999887643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-37  Score=299.52  Aligned_cols=171  Identities=26%  Similarity=0.376  Sum_probs=148.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------C--CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T--SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~--~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||         +  ++|+|.++|.++         ++.++|++|++.+++.+|+.+++. +.  
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  109 (506)
T PRK13549         30 AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI  109 (506)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence            699999999999999999         2  699999999754         245999999988888899887653 21  


Q ss_pred             C--C-CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           60 A--G-IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        60 ~--~-~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .  + .+.    +++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l  189 (506)
T PRK13549        110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL  189 (506)
T ss_pred             cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            1  1 121    3456789999985  46789999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++ .|+|||++|||++++..+||++++|++|+++..|+++++..
T Consensus       190 ~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  232 (506)
T PRK13549        190 KA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE  232 (506)
T ss_pred             HH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence            65 58999999999999999999999999999999999887643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=271.97  Aligned_cols=170  Identities=21%  Similarity=0.217  Sum_probs=142.8

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~  108 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVY  108 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHH
Confidence            7999999999999999991              389999999754          345999999987776 67776542 


Q ss_pred             c--cCCCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+..     .+.+.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  188 (252)
T PRK14239        109 GLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE  188 (252)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence            2  12211     12345677888762      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++|+++. + +.|||++||+++++..+|||+++|++|+++..|+.+++...
T Consensus       189 ~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  237 (252)
T PRK14239        189 ETLLGLK-D-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN  237 (252)
T ss_pred             HHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999885 3 68999999999999999999999999999999999888653

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=272.03  Aligned_cols=170  Identities=22%  Similarity=0.239  Sum_probs=143.2

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~  106 (250)
T PRK14245         28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAY  106 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHH
Confidence            7999999999999999991              379999999764          235999999887776 47766542 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +  ..+. .    .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  186 (250)
T PRK14245        107 GLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE  186 (250)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            2  1221 1    13456788888873      25678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+++. + |+|||++||+++++.++|||+++|++|+++..|+++++.+.
T Consensus       187 ~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~  235 (250)
T PRK14245        187 ELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN  235 (250)
T ss_pred             HHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            9999984 3 79999999999999999999999999999999999988653

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-37  Score=270.92  Aligned_cols=171  Identities=19%  Similarity=0.213  Sum_probs=144.9

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++.+|+.+++. 
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~  108 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIA  108 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHh
Confidence            7999999999999999991              379999999754          345899999988888888876542 


Q ss_pred             cc--CC-CC----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AG-ID----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~-~~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +.  .+ .+    .+++.++++.+++.      .+..+.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~  188 (252)
T PRK14256        109 GYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE  188 (252)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            21  11 12    13356778888873      24568899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+++++  +.|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus       189 ~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14256        189 ELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT  237 (252)
T ss_pred             HHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999853  58999999999999999999999999999999999887653

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=3.2e-37  Score=268.98  Aligned_cols=169  Identities=24%  Similarity=0.344  Sum_probs=137.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc-cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG-VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~-~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.        ++.++|++|++.+++ .|+.+++.. ......
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~  105 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSM  105 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCH
Confidence            799999999999999999         4899999999753        346999999876664 577766532 222222


Q ss_pred             HHHH---------HHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRA---------ELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~---------~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ....         ++++.+  ++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++
T Consensus       106 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  185 (237)
T cd03252         106 ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC  185 (237)
T ss_pred             HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence            2222         233333  222  245789999999999999999999999999999999999999999999999885


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       + |.|||++||+++++. .||++++|++|+++..|+++++...
T Consensus       186 -~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~  226 (237)
T cd03252         186 -A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE  226 (237)
T ss_pred             -C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence             4 899999999999996 5999999999999999998887653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-37  Score=274.74  Aligned_cols=172  Identities=21%  Similarity=0.258  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CC--------ceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TS--------SGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~--------~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      +||+++|+||||||||||         ++        +|+|.++|.++        ++.++|++|++..+..+|+.+++.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~  105 (272)
T PRK13547         26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVL  105 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHh
Confidence            799999999999999999         35        89999999764        234799999876656678876552


Q ss_pred             -ccC------C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCC
Q 024989           58 -GVA------G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDL  115 (259)
Q Consensus        58 -~~~------~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gL  115 (259)
                       ...      + ..   .+.+.++++.+++.  .++++.+|||||||||+||+||+         .+|++|||||||+||
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~L  185 (272)
T PRK13547        106 LGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAAL  185 (272)
T ss_pred             hcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccC
Confidence             211      1 11   13456788889885  46788999999999999999999         599999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          116 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       116 D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |+.++..++++|+++.++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       186 D~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        186 DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT  244 (272)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence            99999999999999876558999999999999999999999999999999999887754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-37  Score=270.38  Aligned_cols=170  Identities=20%  Similarity=0.203  Sum_probs=143.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||         +     ++|+|.++|.++          ++.++|++|++.+++ +|+.+++. 
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~  107 (251)
T PRK14270         29 ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAY  107 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHh
Confidence            799999999999999999         2     579999999764          245899999987776 78776543 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. ..    +++.++++.+++.      .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~  187 (251)
T PRK14270        108 GPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE  187 (251)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            2  1222 11    2345788888763      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+++.+  +.|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus       188 ~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14270        188 DLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE  236 (251)
T ss_pred             HHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence            99999853  58999999999999999999999999999999999987643

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-37  Score=272.87  Aligned_cols=170  Identities=17%  Similarity=0.221  Sum_probs=144.1

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++.+|+.+++. 
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~  108 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVA  108 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHH
Confidence            7999999999999999991              499999999754          245999999988888888876542 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. ..    +.+.++++.+++.      .++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  188 (258)
T PRK14241        109 GLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE  188 (258)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence            1  1121 21    2346678888872      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe------CCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~------~G~i~~~g~~~~~~~  174 (259)
                      +.|++++ + ++|||++||+++++.++||++++|+      +|++++.|+++++..
T Consensus       189 ~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~  242 (258)
T PRK14241        189 DLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS  242 (258)
T ss_pred             HHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence            9999984 3 6899999999999999999999997      799999999988754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.4e-37  Score=298.99  Aligned_cols=172  Identities=23%  Similarity=0.336  Sum_probs=145.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec-----------c-ccEEEecccCC--CCccCcHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW-----------R-REVAFAGFEVP--IQMDVSAEK   54 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~-----------~-~~i~~v~~~~~--~~~~lt~~~   54 (259)
                      +||+++|+||||||||||         +     ++|+|.++|.++           + +.++|++|++.  +++.+++.+
T Consensus        34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~  113 (529)
T PRK15134         34 AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEK  113 (529)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHH
Confidence            699999999999999999         2     589999999753           1 35999999864  455567766


Q ss_pred             HHhc---c-CCCC----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989           55 MIFG---V-AGID----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  121 (259)
Q Consensus        55 ~~~~---~-~~~~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~  121 (259)
                      ++..   . .+.+    .+++.++++.+++.     .++++.+|||||||||+||+||+.+|++|||||||++||+.++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~  193 (529)
T PRK15134        114 QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA  193 (529)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHH
Confidence            4421   1 1222    23467789999985     26689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .++++|++++++.|+|||+||||++++..+||||++|++|+++..|+++++..
T Consensus       194 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  246 (529)
T PRK15134        194 QILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS  246 (529)
T ss_pred             HHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence            99999999876558999999999999999999999999999999999988754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-37  Score=273.29  Aligned_cols=169  Identities=19%  Similarity=0.211  Sum_probs=142.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||         +     ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~  122 (267)
T PRK14235         44 EKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAY  122 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHH
Confidence            799999999999999999         2     689999999754          2458999998877764 7766542 


Q ss_pred             cc--CCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           58 GV--AGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        58 ~~--~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      +.  .+.  .    .+++.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l  202 (267)
T PRK14235        123 GPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV  202 (267)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence            21  121  1    13356788888883      2457899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .+.|++++ + +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       203 ~~~L~~l~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  251 (267)
T PRK14235        203 EELIDELR-Q-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFT  251 (267)
T ss_pred             HHHHHHHh-c-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999885 3 6899999999999999999999999999999999888764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-37  Score=295.90  Aligned_cols=170  Identities=21%  Similarity=0.348  Sum_probs=147.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc---C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---A   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|+++         ++.++|++|++.+++.+|+.+++. +.   .
T Consensus        23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  102 (491)
T PRK10982         23 PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK  102 (491)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence            799999999999999999         4899999999764         246999999988888889877543 21   1


Q ss_pred             C--CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           61 G--IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        61 ~--~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      +  .+.    +++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~  182 (491)
T PRK10982        103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE  182 (491)
T ss_pred             ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence            1  121    2456788889885  4678999999999999999999999999999999999999999999999999865


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                       .|.|||++||+++++..+||++++|++|+++..++++++.
T Consensus       183 -~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  222 (491)
T PRK10982        183 -RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT  222 (491)
T ss_pred             -CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence             5999999999999999999999999999999999987764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=305.87  Aligned_cols=172  Identities=20%  Similarity=0.249  Sum_probs=147.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------------------cccEEEecccC--CCCcc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------------------RREVAFAGFEV--PIQMD   49 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------------------~~~i~~v~~~~--~~~~~   49 (259)
                      +||+++|+|+||||||||         +++|+|.++|..+                      .+.++|++|++  .+++.
T Consensus        41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~  120 (623)
T PRK10261         41 RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPV  120 (623)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCC
Confidence            799999999999999999         4799999987421                      13599999987  56777


Q ss_pred             CcHHHHHh-c--c-CCCCH----HHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Q 024989           50 VSAEKMIF-G--V-AGIDP----QRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD  116 (259)
Q Consensus        50 lt~~~~~~-~--~-~~~~~----~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD  116 (259)
                      +|+.+++. +  . .+.+.    +++.++++.+++.     .++++.+|||||||||+||+||+.+|++|||||||++||
T Consensus       121 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD  200 (623)
T PRK10261        121 FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD  200 (623)
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccC
Confidence            88876542 2  1 12222    3466789999984     367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       117 ~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.++..++++|++++++.|+|||+||||++++.++||||++|++|+++..|+++++..
T Consensus       201 ~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~  258 (623)
T PRK10261        201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH  258 (623)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence            9999999999999976569999999999999999999999999999999999988764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=3.1e-37  Score=274.47  Aligned_cols=172  Identities=26%  Similarity=0.423  Sum_probs=146.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCC--CCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVP--IQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~--~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++           ++.++|++|++.  +++..++.+++. . 
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~  116 (268)
T PRK10419         37 SGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL  116 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence            799999999999999999         4899999999753           346999999863  455677766542 1 


Q ss_pred             --cCCCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 --VAGID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 --~~~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                        ....+    ...+.++++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  196 (268)
T PRK10419        117 RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK  196 (268)
T ss_pred             HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence              11222    13467889999884   3678899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++++.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       197 ~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  241 (268)
T PRK10419        197 LQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT  241 (268)
T ss_pred             HHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence            876568999999999999999999999999999999999888753

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-37  Score=271.35  Aligned_cols=170  Identities=21%  Similarity=0.261  Sum_probs=142.9

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~  115 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAY  115 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHh
Confidence            7999999999999999991              489999999764          2458999999877765 7766542 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. ..    +++.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  195 (259)
T PRK14274        116 GPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE  195 (259)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            2  1221 21    2345678888773      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|.++. + +.|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus       196 ~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  244 (259)
T PRK14274        196 ELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN  244 (259)
T ss_pred             HHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence            9999984 3 78999999999999999999999999999999999987653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=5.3e-37  Score=270.08  Aligned_cols=167  Identities=21%  Similarity=0.298  Sum_probs=139.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-C--CCCHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-A--GIDPQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~--~~~~~~~~~~   70 (259)
                      +||+++|+||||||||||         +++|+|.++|.    .++|++|++..+..+|+.+++... .  ........++
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~   99 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI   99 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence            699999999999999999         48999999985    589999987766778888765321 1  1122345678


Q ss_pred             HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++.+++.  .++++.+|||||||||+||+||+.+|+++||||||++||+.++..+.++|++++++.|+|||++||+++++
T Consensus       100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~  179 (246)
T cd03237         100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI  179 (246)
T ss_pred             HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            8889885  46789999999999999999999999999999999999999999999999998766689999999999999


Q ss_pred             hccCCeEEEEeCCeEE--EecChhHHH
Q 024989          149 ENWPSHIVYVAHGKLQ--LAMPMDKVK  173 (259)
Q Consensus       149 ~~~~drv~~l~~G~i~--~~g~~~~~~  173 (259)
                      ..+||++++|+++..+  ..+++.++.
T Consensus       180 ~~~~d~i~~l~~~~~~~~~~~~~~~~~  206 (246)
T cd03237         180 DYLADRLIVFEGEPSVNGVANPPQSLR  206 (246)
T ss_pred             HHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence            9999999999765433  344555543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-37  Score=272.47  Aligned_cols=169  Identities=17%  Similarity=0.181  Sum_probs=142.0

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~  116 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAF  116 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhh
Confidence            7999999999999999992              689999999753          2459999999877764 7776553 


Q ss_pred             c--cCCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 G--VAGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 ~--~~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                      .  ..+..   .+++.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++
T Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~  196 (269)
T PRK14259        117 GARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET  196 (269)
T ss_pred             hhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence            2  12222   23455678888762      3567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC-----------CeEEEecChhHHHH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAH-----------GKLQLAMPMDKVKE  174 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~-----------G~i~~~g~~~~~~~  174 (259)
                      |++++ + +.|||++||+++++..+||++++|++           |++++.|+++++..
T Consensus       197 l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~  253 (269)
T PRK14259        197 MHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN  253 (269)
T ss_pred             HHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence            99884 3 68999999999999999999999996           67899999988865

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-37  Score=268.47  Aligned_cols=169  Identities=20%  Similarity=0.214  Sum_probs=142.1

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++ +|+.+++. 
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~  106 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAY  106 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHH
Confidence            7999999999999999991              489999999753          345899999887776 77776542 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. .    .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~  186 (250)
T PRK14240        107 GPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE  186 (250)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            2  1221 1    23345677777762      25678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+++. + +.|||++||+++++.++||++++|++|+++..++.+++..
T Consensus       187 ~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  234 (250)
T PRK14240        187 ELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT  234 (250)
T ss_pred             HHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999884 3 7899999999999999999999999999999999888754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-37  Score=272.09  Aligned_cols=170  Identities=22%  Similarity=0.217  Sum_probs=141.9

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~  124 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITH  124 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHH
Confidence            7999999999999999981              589999999754          2458999998877764 7766442 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. .    .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~  204 (268)
T PRK14248        125 ALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE  204 (268)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH
Confidence            2  1121 1    12345677777763      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++|++++ + +.|||++||+++++..+|||+++|++|+++..|+++++...
T Consensus       205 ~~l~~~~-~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  253 (268)
T PRK14248        205 ELITELK-E-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS  253 (268)
T ss_pred             HHHHHHh-c-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999985 3 68999999999999999999999999999999999887653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-37  Score=270.94  Aligned_cols=172  Identities=18%  Similarity=0.247  Sum_probs=144.7

Q ss_pred             CCcEEEEEcCCCCCccccC---------C-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||+         +     +|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~  110 (261)
T PRK14258         32 QSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAY  110 (261)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHH
Confidence            7999999999999999992         2     79999999753          235899999877776 78776542 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. +    .+.+.++++.+++.      .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~  190 (261)
T PRK14258        111 GVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE  190 (261)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            1  1121 1    13356788888863      25678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC-----CeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-----GKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~-----G~i~~~g~~~~~~~~  175 (259)
                      +.|++++++.|.|||++||+++++.++|||+++|++     |+++..|+++++.+.
T Consensus       191 ~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~  246 (261)
T PRK14258        191 SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS  246 (261)
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence            999998654589999999999999999999999999     999999999998653

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-37  Score=269.95  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=142.2

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-h
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-F   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++. ++.+++ +
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~  108 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAY  108 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHH
Confidence            7999999999999999991              389999999753          3458999998877765 666543 2


Q ss_pred             c--cCCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           58 G--VAGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        58 ~--~~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                      .  ..+.  .    .+.+.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  188 (251)
T PRK14244        109 GPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI  188 (251)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence            2  1121  1    12345788888874      2457889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++.|+++. + |+|||++||+++++.++||++++|++|+++..|+++++...
T Consensus       189 ~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (251)
T PRK14244        189 ENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN  238 (251)
T ss_pred             HHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999874 3 89999999999999999999999999999999998887643

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=8.9e-37  Score=266.35  Aligned_cols=168  Identities=23%  Similarity=0.295  Sum_probs=136.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. .......
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~  106 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATD  106 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCH
Confidence            799999999999999999         4899999999764        245999999877665 57776553 2211122


Q ss_pred             HHHHHHHHH---------c--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKV---------L--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~---------~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +...+.++.         +  ++.  .+.++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~  186 (238)
T cd03249         107 EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM  186 (238)
T ss_pred             HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence            222222222         2  221  245678999999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                        .|.|||++||+++++. +||++++|++|+++..++.+++..
T Consensus       187 --~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~  226 (238)
T cd03249         187 --KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA  226 (238)
T ss_pred             --CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence              4899999999999997 799999999999999998877654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=5.2e-37  Score=279.34  Aligned_cols=176  Identities=22%  Similarity=0.349  Sum_probs=154.2

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec-----------cccEEEecccCC--CCccCcHHHHHh-cc-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW-----------RREVAFAGFEVP--IQMDVSAEKMIF-GV-   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~-----------~~~i~~v~~~~~--~~~~lt~~~~~~-~~-   59 (259)
                      +||.++|+|.||||||||        .++|.|.+.|.++           ++++-.|+|++.  +.|.+|+.+++. ++ 
T Consensus       312 ~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~  391 (534)
T COG4172         312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR  391 (534)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence            699999999999999999        4789999999864           456778888874  678899888763 22 


Q ss_pred             -C--CCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           60 -A--GIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        60 -~--~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                       +  ..+.    +++.++++.+|++   .+++++++|||||||++||||++.+|++++||||||+||...+.++.++|++
T Consensus       392 vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~  471 (534)
T COG4172         392 VHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD  471 (534)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHH
Confidence             1  2222    3466788899997   4688999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      +.++.|.+-++||||+..+..+||+|+||++|+|++.|+.+++++....
T Consensus       472 LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~  520 (534)
T COG4172         472 LQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH  520 (534)
T ss_pred             HHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCc
Confidence            9999999999999999999999999999999999999999999876543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-37  Score=295.13  Aligned_cols=170  Identities=19%  Similarity=0.284  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCC---CCccCcHHHHHh-ccC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVP---IQMDVSAEKMIF-GVA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~---~~~~lt~~~~~~-~~~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|+++         ++.++|++|++.   +++.+|+.+++. +..
T Consensus       278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~  357 (501)
T PRK11288        278 AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISAR  357 (501)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccc
Confidence            799999999999999999         4899999999754         245899999863   677788876542 211


Q ss_pred             ------C--CC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           61 ------G--ID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        61 ------~--~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                            +  ..    .+.+.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~  437 (501)
T PRK11288        358 RHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN  437 (501)
T ss_pred             hhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH
Confidence                  1  01    12456789999983   467899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +|.++++ .|.|||++|||++++..+||++++|++|++++.|++++..
T Consensus       438 ~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        438 VIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             HHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence            9999875 5999999999999999999999999999999999887654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-37  Score=268.60  Aligned_cols=169  Identities=24%  Similarity=0.298  Sum_probs=142.5

Q ss_pred             CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||        .      ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~  106 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAF  106 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHH
Confidence            699999999999999999        1      689999999653          346999999887776 78776542 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. ..    +.+.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~  186 (250)
T PRK14262        107 GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIE  186 (250)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH
Confidence            2  1221 11    2345677888773      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++|.++. + ++|||++||+++++..+||++++|++|+++..|+++++.+
T Consensus       187 ~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14262        187 KLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE  234 (250)
T ss_pred             HHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            9999985 3 6899999999999999999999999999999999988764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=5.3e-37  Score=264.62  Aligned_cols=160  Identities=24%  Similarity=0.301  Sum_probs=133.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc-cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG-VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~-~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++.. ......
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~  107 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADD  107 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCH
Confidence            799999999999999999         4899999999754        246899999887765 577766532 222233


Q ss_pred             HHHHHHHHHcCCC--ccc-----------cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID--LSW-----------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~-----------~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +.+.++++.+++.  .++           .+.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++
T Consensus       108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  187 (220)
T cd03245         108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL  187 (220)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence            4556677777763  122           346999999999999999999999999999999999999999999999986


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      +  +.|||++||+++++ ++||++++|++|+++..
T Consensus       188 ~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         188 G--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             C--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence            4  38999999999987 69999999999999764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-36  Score=268.11  Aligned_cols=169  Identities=26%  Similarity=0.320  Sum_probs=142.6

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.++. .|+.+++. 
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~  107 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAY  107 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHH
Confidence            7999999999999999982              499999999753          345899999887775 67776543 


Q ss_pred             cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      ..  .+. ..    +.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~  187 (251)
T PRK14251        108 GLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE  187 (251)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHH
Confidence            21  221 11    2356678888873      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+++. + +.|||++||+++++..+||++++|++|+++..++.+++..
T Consensus       188 ~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  235 (251)
T PRK14251        188 ETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI  235 (251)
T ss_pred             HHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence            9999874 3 6899999999999999999999999999999999988754

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1.2e-36  Score=264.64  Aligned_cols=168  Identities=27%  Similarity=0.329  Sum_probs=137.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. .......
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~  105 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATR  105 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCH
Confidence            799999999999999999         4899999999753        346999999877765 57776553 2222222


Q ss_pred             HHH---------HHHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRR---------AELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~---------~~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ...         .++++.+  ++.  .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~  185 (234)
T cd03251         106 EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM  185 (234)
T ss_pred             HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence            222         2334444  332  356788999999999999999999999999999999999999999999999885


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       + |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus       186 -~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~  225 (234)
T cd03251         186 -K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA  225 (234)
T ss_pred             -C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence             3 8999999999999986 99999999999999998887754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-37  Score=295.59  Aligned_cols=166  Identities=17%  Similarity=0.272  Sum_probs=142.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEeccc---CCCCccCcHHHHHh-ccC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFE---VPIQMDVSAEKMIF-GVA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~---~~~~~~lt~~~~~~-~~~   60 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|+   ..+++.+|+.+++. ...
T Consensus       288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~  367 (510)
T PRK09700        288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRS  367 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccc
Confidence            699999999999999999         4899999999753         2458999997   35777888877543 210


Q ss_pred             ----------CC-CH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           61 ----------GI-DP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        61 ----------~~-~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                                +. ..    +++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~  447 (510)
T PRK09700        368 LKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE  447 (510)
T ss_pred             cccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHH
Confidence                      11 11    2356789999984   367899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecCh
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  169 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~  169 (259)
                      ++++|+++++ .|.|||++|||++++..+|||+++|++|+++..++.
T Consensus       448 l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        448 IYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            9999999875 599999999999999999999999999999988766

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-37  Score=271.98  Aligned_cols=170  Identities=22%  Similarity=0.325  Sum_probs=140.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-----ccEEEecccCCCCc--cCcHHHHHh-cc------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-----REVAFAGFEVPIQM--DVSAEKMIF-GV------   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-----~~i~~v~~~~~~~~--~lt~~~~~~-~~------   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.     +.++|++|++.++.  ..++.+++. +.      
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~  111 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW  111 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccc
Confidence            799999999999999999         48999999998642     35999999865422  234555432 11      


Q ss_pred             CCC--C--HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGI--D--PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~--~--~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      ...  .  .+++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.++|+++++ 
T Consensus       112 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-  190 (272)
T PRK15056        112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-  190 (272)
T ss_pred             ccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-
Confidence            011  1  23456788999885  4678999999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|+|||++||+++++..+||+++++ +|+++..|+++++..
T Consensus       191 ~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~  230 (272)
T PRK15056        191 EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT  230 (272)
T ss_pred             CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence            5899999999999999999999877 899999999888653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-37  Score=295.79  Aligned_cols=170  Identities=21%  Similarity=0.277  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-CceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-SSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||         + ++|+|.++|.++         ++.++|++|++   .+++.+|+.+++. + 
T Consensus       287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~  366 (506)
T PRK13549        287 RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAA  366 (506)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhh
Confidence            799999999999999999         2 799999999753         23589999985   3667788876542 2 


Q ss_pred             ---cCC---CCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 ---VAG---IDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 ---~~~---~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                         +..   .+.    +++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~  446 (506)
T PRK13549        367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK  446 (506)
T ss_pred             hhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence               111   121    3466789999984   367899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +|.++++ .|+|||++|||++++.++||++++|++|+++..++++++.
T Consensus       447 ~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  493 (506)
T PRK13549        447 LINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT  493 (506)
T ss_pred             HHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence            9999875 5999999999999999999999999999999999887763

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=4.3e-37  Score=296.09  Aligned_cols=171  Identities=17%  Similarity=0.250  Sum_probs=144.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHhc---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIFG---   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~~---   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++   .+++.+|+.+++..   
T Consensus       288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~  367 (510)
T PRK15439        288 AGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH  367 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh
Confidence            799999999999999999         4899999999754         23589999874   36777777654321   


Q ss_pred             ----cCCCC---HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           59 ----VAGID---PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        59 ----~~~~~---~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                          .....   .+.+.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~  447 (510)
T PRK15439        368 NRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR  447 (510)
T ss_pred             hhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHH
Confidence                11011   12356789999984   367899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++++ .|.|||++|||++++.++||++++|++|+++..++++++..
T Consensus       448 ~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  492 (510)
T PRK15439        448 SIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV  492 (510)
T ss_pred             HHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence            9876 58999999999999999999999999999999998887653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.2e-36  Score=293.52  Aligned_cols=172  Identities=22%  Similarity=0.349  Sum_probs=145.2

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEc-----------------------Cee----------------
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYL-----------------------GGE----------------   32 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~-----------------------G~~----------------   32 (259)
                      +||+++|+||||||||||           +++|+|.++                       |.+                
T Consensus        25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  104 (520)
T TIGR03269        25 EGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR  104 (520)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHH
Confidence            799999999999999998           268999986                       211                


Q ss_pred             --ccccEEEeccc-CCCCccCcHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc
Q 024989           33 --WRREVAFAGFE-VPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL  100 (259)
Q Consensus        33 --~~~~i~~v~~~-~~~~~~lt~~~~~-~~~--~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~  100 (259)
                        +++.++|++|+ ..+++.+|+.+++ +..  .+.+.    +++.++++.+++.  .++++.+|||||||||+||+||+
T Consensus       105 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~  184 (520)
T TIGR03269       105 RRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLA  184 (520)
T ss_pred             HHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHh
Confidence              13458999997 5677778876654 221  22222    3466789999985  36789999999999999999999


Q ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .+|++|||||||++||+.++..++++|++++++.|+|||+||||++++.++||++++|++|+++..|+++++..
T Consensus       185 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  258 (520)
T TIGR03269       185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA  258 (520)
T ss_pred             cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence            99999999999999999999999999999876669999999999999999999999999999999999887754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=266.54  Aligned_cols=170  Identities=22%  Similarity=0.239  Sum_probs=141.8

Q ss_pred             CCcEEEEEcCCCCCccccC---------C-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.         +     +|+|.++|.++          ++.++|++|++.+++.+|+.+++. 
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~  108 (252)
T PRK14272         29 RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA  108 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHH
Confidence            7999999999999999992         2     79999999764          235899999988888888876543 


Q ss_pred             cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      ..  .+. ..    +.+.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~  188 (252)
T PRK14272        109 GLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE  188 (252)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            21  221 22    2233455556542      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|++++ + ++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       189 ~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  236 (252)
T PRK14272        189 DLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT  236 (252)
T ss_pred             HHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999875 3 6999999999999999999999999999999999988765

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.5e-36  Score=263.38  Aligned_cols=168  Identities=21%  Similarity=0.232  Sum_probs=136.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhcc-CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.++.. |+.+++... .....
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~  106 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATD  106 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCH
Confidence            799999999999999999         4899999999754        3459999998777665 776655322 11222


Q ss_pred             HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      .+..++++.+++           .  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|.++.
T Consensus       107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  186 (229)
T cd03254         107 EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM  186 (229)
T ss_pred             HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence            333333333332           1  234578999999999999999999999999999999999999999999999874


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       + |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus       187 -~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~  226 (229)
T cd03254         187 -K-GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA  226 (229)
T ss_pred             -C-CCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence             3 8999999999999875 99999999999999888877654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.8e-37  Score=293.09  Aligned_cols=170  Identities=22%  Similarity=0.338  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------C--CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T--SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~--~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||         +  ++|+|.++|.++         ++.++|++|++.+++.+|+.+++. ..  
T Consensus        26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~  105 (500)
T TIGR02633        26 PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEI  105 (500)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence            799999999999999999         2  589999999764         245999999988888889876542 21  


Q ss_pred             C--C--CCH----HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           60 A--G--IDP----QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        60 ~--~--~~~----~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      .  +  ...    +++.++++.+++..   ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  185 (500)
T TIGR02633       106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR  185 (500)
T ss_pred             cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            1  1  121    34567899999852   45689999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      ++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus       186 ~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (500)
T TIGR02633       186 DLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS  229 (500)
T ss_pred             HHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence            9865 5999999999999999999999999999999988876543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.4e-36  Score=263.43  Aligned_cols=164  Identities=24%  Similarity=0.329  Sum_probs=138.4

Q ss_pred             CCcEEEEEcCCCCCcccc--------C----CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh-c--cC--
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T----SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF-G--VA--   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~----~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~-~--~~--   60 (259)
                      +||+++|+||||||||||        .    ++|+|.++|.++     ++.++|++|++.+++.+|+.+++. .  ..  
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~  111 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP  111 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence            799999999999999999        2    699999999764     456999999988888888876542 1  11  


Q ss_pred             C-CCH----HHHHH-HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           61 G-IDP----QRRAE-LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        61 ~-~~~----~~~~~-~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      . ...    ....+ +++.+++.  .++.+.+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~  191 (226)
T cd03234         112 RKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR  191 (226)
T ss_pred             cccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence            1 111    12334 77788775  3567899999999999999999999999999999999999999999999999865


Q ss_pred             hcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEec
Q 024989          133 ERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       133 ~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g  167 (259)
                       .|.|||++||++ +++.++||++++|++|+++..|
T Consensus       192 -~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         192 -RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             -CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence             489999999999 5899999999999999998754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=7e-37  Score=293.97  Aligned_cols=170  Identities=21%  Similarity=0.341  Sum_probs=145.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh-cc-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF-GV-   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~-~~-   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++   .+++.+|+.+++. .. 
T Consensus       277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~  356 (501)
T PRK10762        277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL  356 (501)
T ss_pred             CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhh
Confidence            699999999999999999         4899999999753         24599999986   4667788876542 11 


Q ss_pred             ---C---C-CC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           60 ---A---G-ID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        60 ---~---~-~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                         .   + .+    .+++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~  436 (501)
T PRK10762        357 RYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ  436 (501)
T ss_pred             hhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH
Confidence               0   1 11    13456789999983   467899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +|+++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus       437 ~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  483 (501)
T PRK10762        437 LINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT  483 (501)
T ss_pred             HHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence            9999875 4999999999999999999999999999999999887653

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-36  Score=270.41  Aligned_cols=170  Identities=21%  Similarity=0.233  Sum_probs=142.6

Q ss_pred             CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||        .      ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~  142 (286)
T PRK14275         64 SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY  142 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHh
Confidence            799999999999999999        1      789999999653          3469999999877764 7776553 


Q ss_pred             cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      ..  .+. +.    +.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~  222 (286)
T PRK14275        143 GPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE  222 (286)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            21  122 11    2345677777762      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+++. + +.|||++||+++++..+|||+++|++|+++..|+.+++.+.
T Consensus       223 ~~L~~~~-~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~  271 (286)
T PRK14275        223 DLIQELR-G-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN  271 (286)
T ss_pred             HHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999875 3 68999999999999999999999999999999999887653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=7.6e-37  Score=264.10  Aligned_cols=160  Identities=28%  Similarity=0.385  Sum_probs=137.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++           ++.++|++|++.+++.+|+.+++. .  .
T Consensus        30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~  109 (220)
T TIGR02982        30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL  109 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence            699999999999999999         4899999999864           246999999988888888876542 1  1


Q ss_pred             C-CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 A-GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 ~-~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      . ....    +.+.++++.+++.  .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~  189 (220)
T TIGR02982       110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR  189 (220)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence            1 1222    3467788999985  4678899999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      +.|+|||++||+++. .++||++++|++|++
T Consensus       190 ~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       190 EQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             HcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            568999999999985 579999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1.7e-36  Score=270.95  Aligned_cols=169  Identities=18%  Similarity=0.267  Sum_probs=144.3

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||+++|+|+||||||||        .++|+|.++|.++        ++.++|++|++.+|+. |+.+++........++
T Consensus        29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~  107 (275)
T cd03289          29 PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEE  107 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHH
Confidence            799999999999999999        3799999999764        3569999999888864 7777664222234566


Q ss_pred             HHHHHHHcCCC--ccccCCc-----------CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           67 RAELIKVLDID--LSWRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~-----------LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      +.++++.+++.  .++.+..           ||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++..  
T Consensus       108 ~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--  185 (275)
T cd03289         108 IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--  185 (275)
T ss_pred             HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--
Confidence            77788888874  2444444           99999999999999999999999999999999999999999999763  


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .++|||++||+++++.. ||||++|++|+++..|+++++...
T Consensus       186 ~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~  226 (275)
T cd03289         186 ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE  226 (275)
T ss_pred             CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence            48999999999999876 999999999999999999998763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=268.74  Aligned_cols=169  Identities=19%  Similarity=0.186  Sum_probs=142.8

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~  123 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITF  123 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHh
Confidence            7999999999999999991              489999999764          345899999877776 57776553 


Q ss_pred             cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +.  .+. ..    +++.++++.+++.      .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~  203 (267)
T PRK14237        124 ALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE  203 (267)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            21  121 11    2345678888773      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++|+++. + +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       204 ~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  251 (267)
T PRK14237        204 ETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT  251 (267)
T ss_pred             HHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            9999874 3 7899999999999999999999999999999999988754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-36  Score=268.47  Aligned_cols=170  Identities=18%  Similarity=0.210  Sum_probs=141.7

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~  113 (264)
T PRK14243         35 KNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAY  113 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHh
Confidence            7999999999999999992              589999999754          3459999998877764 7766542 


Q ss_pred             cc--CCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 GV--AGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 ~~--~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                      ..  .+..   .+++.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  193 (264)
T PRK14243        114 GARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL  193 (264)
T ss_pred             hhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            21  1111   13345567777662      3567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe---------CCeEEEecChhHHHHH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVA---------HGKLQLAMPMDKVKEA  175 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~---------~G~i~~~g~~~~~~~~  175 (259)
                      |.++.+  +.|||++||+++++.++|||+++|+         +|++++.|+++++...
T Consensus       194 L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~  249 (264)
T PRK14243        194 MHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS  249 (264)
T ss_pred             HHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence            999853  5899999999999999999999998         8999999999998653

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-36  Score=264.81  Aligned_cols=169  Identities=19%  Similarity=0.216  Sum_probs=141.2

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~   58 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++         ++.++|++|++.+++ .|+.+++. .
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~  106 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG  106 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhH
Confidence            7999999999999999992              389999999653         245899999988776 67766543 2


Q ss_pred             c--CCCC-H----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 V--AGID-P----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 ~--~~~~-~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      .  .+.. .    +++.++++.+++.      .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~  186 (249)
T PRK14253        107 LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE  186 (249)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence            1  1221 1    2345567777762      246788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|+++.+  +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       187 ~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (249)
T PRK14253        187 LMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS  233 (249)
T ss_pred             HHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            9999853  5899999999999999999999999999999999887754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-36  Score=265.14  Aligned_cols=170  Identities=17%  Similarity=0.153  Sum_probs=141.7

Q ss_pred             CCcEEEEEcCCCCCccccC---------C-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.         +     +|+|.++|.+.          ++.++|++|++.+++. |+.+++. 
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~  107 (251)
T PRK14249         29 ERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAF  107 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhh
Confidence            7999999999999999992         3     59999999753          3459999999887764 7766542 


Q ss_pred             cc--CCCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      ..  .+..     .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  187 (251)
T PRK14249        108 GPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE  187 (251)
T ss_pred             HHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            21  1211     12345567777752      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++|+++ + .|.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus       188 ~~l~~~-~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14249        188 ELMQEL-K-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR  236 (251)
T ss_pred             HHHHHH-h-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence            999987 3 489999999999999999999999999999999999887653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.6e-36  Score=258.36  Aligned_cols=157  Identities=19%  Similarity=0.239  Sum_probs=132.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+|+||||||||         +++|+|.++|.+.        ++.++|++|++.+++ .|+.+++........+
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~  111 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDE  111 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCCCHH
Confidence            799999999999999999         4899999999763        356999999987765 4777766322222333


Q ss_pred             HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      .+.+.++     .++++.+|||||+||++|||||+.+|+++||||||+|||+.++..+++.|+++.  .|.|+|++||++
T Consensus       112 ~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~  184 (207)
T cd03369         112 EIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRL  184 (207)
T ss_pred             HHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH
Confidence            3333333     356789999999999999999999999999999999999999999999999874  389999999999


Q ss_pred             hHHhccCCeEEEEeCCeEEEecC
Q 024989          146 DGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       146 ~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      +++.. ||++++|++|+++..|+
T Consensus       185 ~~~~~-~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         185 RTIID-YDKILVMDAGEVKEYDH  206 (207)
T ss_pred             HHHhh-CCEEEEEECCEEEecCC
Confidence            99976 99999999999988765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=271.30  Aligned_cols=169  Identities=21%  Similarity=0.290  Sum_probs=141.6

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||+              ++|+|.++|.++          ++.++|++|++.+++. ++.+++. 
T Consensus        64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~  142 (285)
T PRK14254         64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAY  142 (285)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHH
Confidence            7999999999999999991              589999999754          3458999998877764 7766542 


Q ss_pred             c--cCCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 G--VAGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 ~--~~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                      .  ..+..   .+++.++++.+++.      .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++
T Consensus       143 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~  222 (285)
T PRK14254        143 GLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL  222 (285)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence            2  11222   23466788888873      3567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEE-EEeCCeEEEecChhHHHH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIV-YVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~-~l~~G~i~~~g~~~~~~~  174 (259)
                      |+++++  +.|||++||+++++..+|||++ +|++|+++..|+++++..
T Consensus       223 L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~  269 (285)
T PRK14254        223 IEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE  269 (285)
T ss_pred             HHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence            999864  4799999999999999999975 679999999999888754

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=290.97  Aligned_cols=166  Identities=20%  Similarity=0.316  Sum_probs=143.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~----   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. ..    
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  108 (501)
T PRK11288         29 AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK  108 (501)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence            799999999999999999         4899999999764         346999999988888888876543 21    


Q ss_pred             CC-CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 AG-ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 ~~-~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      .+ .+    .+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  188 (501)
T PRK11288        109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA  188 (501)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            12 12    13456789999985  4678899999999999999999999999999999999999999999999999865


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecCh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  169 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~  169 (259)
                       .|.|||++||+++++..+||++++|++|+++..++.
T Consensus       189 -~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        189 -EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             -CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence             599999999999999999999999999999876653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1.7e-36  Score=263.01  Aligned_cols=164  Identities=20%  Similarity=0.308  Sum_probs=136.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c--cCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. .  ..+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~  110 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC
Confidence            799999999999999999         4899999999754        346899999887776 47776542 1  1221


Q ss_pred             --CHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           63 --DPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        63 --~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                        ..+++.++++.+++.   .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..+.+.|.++.++.|.|
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  190 (225)
T PRK10247        111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA  190 (225)
T ss_pred             ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence              234466889999984   367899999999999999999999999999999999999999999999999987656899


Q ss_pred             EEEEeCChhHHhccCCeEEEEe-CCeEEEecC
Q 024989          138 IIYATHIFDGLENWPSHIVYVA-HGKLQLAMP  168 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~-~G~i~~~g~  168 (259)
                      ||++||+++++. .||++++|+ ++..+.+|+
T Consensus       191 vii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        191 VLWVTHDKDEIN-HADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             EEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence            999999999996 699999995 555555554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.2e-36  Score=291.58  Aligned_cols=170  Identities=21%  Similarity=0.254  Sum_probs=142.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCC---c-----cCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQ---M-----DVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~---~-----~lt~~~~~~   57 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.        ++.++|++|++...   .     .+++.+++.
T Consensus        28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  107 (490)
T PRK10938         28 AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ  107 (490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence            799999999999999999         4899999988643        23489998875431   1     345555432


Q ss_pred             ccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           58 GVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        58 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .. ....+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|
T Consensus       108 ~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g  185 (490)
T PRK10938        108 DE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SG  185 (490)
T ss_pred             cc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cC
Confidence            11 11234567899999985  4678999999999999999999999999999999999999999999999999875 58


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|||++||+++++.++||++++|++|+++..|+++++..
T Consensus       186 ~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        186 ITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             CeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999999888754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-36  Score=264.72  Aligned_cols=170  Identities=23%  Similarity=0.248  Sum_probs=140.9

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~  108 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIY  108 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHH
Confidence            7999999999999999991              389999999754          245999999987776 57765442 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. ..    +.+.+.++.+++.      .++.+.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  188 (252)
T PRK14255        109 GLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIE  188 (252)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence            2  1221 11    2334566777652      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++|+++.+  +.|||++||+++++.++||++++|++|+++..+++.++...
T Consensus       189 ~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14255        189 NMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN  237 (252)
T ss_pred             HHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999853  58999999999999999999999999999999998887643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-36  Score=292.14  Aligned_cols=169  Identities=21%  Similarity=0.257  Sum_probs=143.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-CceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh-c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-SSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF-G-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~-~-   58 (259)
                      +||+++|+||||||||||         + ++|+|.++|+++         ++.++|++|++   .+++.+|+.+++. . 
T Consensus       285 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~  364 (500)
T TIGR02633       285 RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSV  364 (500)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchh
Confidence            799999999999999999         2 699999999654         24589999985   4677888876542 1 


Q ss_pred             ---cC---CCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 ---VA---GID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 ---~~---~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                         ..   ...    .+++.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~  444 (500)
T TIGR02633       365 LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK  444 (500)
T ss_pred             hhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence               11   112    12456789999984   367899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      +|.++++ .|.|||++|||++++.++||++++|++|+++..++.+++
T Consensus       445 ~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       445 LINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             HHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence            9999875 599999999999999999999999999999988866543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=267.13  Aligned_cols=169  Identities=20%  Similarity=0.215  Sum_probs=142.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||         +     ++|+|.++|.++          ++.++|++|++.++ .+|+.+++. 
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~  111 (261)
T PRK14263         33 KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAF  111 (261)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHH
Confidence            799999999999999998         2     599999999764          24589999988776 577776542 


Q ss_pred             cc--CCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 GV--AGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 ~~--~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                      +.  .+..   .+++.++++.+++.      .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~  191 (261)
T PRK14263        112 GLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL  191 (261)
T ss_pred             HHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            21  1111   23466788888873      1356789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe--------CCeEEEecChhHHHH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVA--------HGKLQLAMPMDKVKE  174 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~--------~G~i~~~g~~~~~~~  174 (259)
                      |++++ + +.|||++||+++++.++|||+++|+        +|++++.|+.+++.+
T Consensus       192 l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~  245 (261)
T PRK14263        192 MVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ  245 (261)
T ss_pred             HHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence            99984 3 7899999999999999999999996        899999999998765

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=4.7e-36  Score=261.29  Aligned_cols=168  Identities=24%  Similarity=0.312  Sum_probs=136.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. .......
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~  104 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATD  104 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCH
Confidence            799999999999999999         4899999999764        345999999987775 57776553 2222222


Q ss_pred             HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ....+.++.+++           .  .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+++.|.+++
T Consensus       105 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  184 (236)
T cd03253         105 EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS  184 (236)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence            223332322222           1  234578999999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       + |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus       185 -~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~  224 (236)
T cd03253         185 -K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA  224 (236)
T ss_pred             -C-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence             4 8999999999999976 99999999999999998887754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-36  Score=268.51  Aligned_cols=169  Identities=21%  Similarity=0.221  Sum_probs=142.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||         +     ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~  128 (272)
T PRK14236         50 KNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVY  128 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHH
Confidence            799999999999999999         1     599999999753          3468999998877775 7776542 


Q ss_pred             c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. .    .+.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~  208 (272)
T PRK14236        129 GLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE  208 (272)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH
Confidence            2  2221 1    12356678888773      25678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|++++ + +.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus       209 ~~L~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  256 (272)
T PRK14236        209 ELITELK-S-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT  256 (272)
T ss_pred             HHHHHHH-h-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence            9999985 3 6899999999999999999999999999999999888754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-36  Score=268.00  Aligned_cols=170  Identities=21%  Similarity=0.216  Sum_probs=141.4

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++. ++.+++. 
T Consensus        45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~  123 (274)
T PRK14265         45 AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAF  123 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHh
Confidence            7999999999999999992              389999999754          2468999999877764 7766542 


Q ss_pred             cc--CCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 GV--AGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 ~~--~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                      +.  .+..   .+.+.++++.+++.      .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~  203 (274)
T PRK14265        124 APRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL  203 (274)
T ss_pred             HHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            21  1111   22345567777752      3567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe---------CCeEEEecChhHHHHH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVA---------HGKLQLAMPMDKVKEA  175 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~---------~G~i~~~g~~~~~~~~  175 (259)
                      |.+++ + +.|||++||+++++..+|||+++|+         +|+++..|+++++...
T Consensus       204 L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~  259 (274)
T PRK14265        204 CLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS  259 (274)
T ss_pred             HHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence            99985 3 6899999999999999999999998         8999999999988653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-36  Score=266.12  Aligned_cols=170  Identities=18%  Similarity=0.204  Sum_probs=142.5

Q ss_pred             CCCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh
Q 024989            2 VEPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      -+||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+|+ .|+.+++.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~  109 (259)
T PRK14260         31 YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVA  109 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHH
Confidence            37999999999999999992              379999999754          235999999988776 78876543


Q ss_pred             -cc--CC-CCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           58 -GV--AG-IDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        58 -~~--~~-~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                       +.  .+ .+.    +.+.++++.+++.      .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l  189 (259)
T PRK14260        110 YGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV  189 (259)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence             21  11 121    2345677888762      3567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe-----CCeEEEecChhHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-----HGKLQLAMPMDKVKE  174 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~-----~G~i~~~g~~~~~~~  174 (259)
                      ++.|+++. + ++|||++||+++++..+||++++|+     +|+++..|+++++.+
T Consensus       190 ~~~l~~~~-~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  243 (259)
T PRK14260        190 EELIHSLR-S-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS  243 (259)
T ss_pred             HHHHHHHh-c-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence            99999975 3 6899999999999999999999998     599999999998764

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-36  Score=266.57  Aligned_cols=170  Identities=21%  Similarity=0.240  Sum_probs=140.5

Q ss_pred             CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||        .      ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~  127 (271)
T PRK14238         49 ENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTY  127 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHH
Confidence            799999999999999999        2      679999999754          3459999999877764 7766542 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCC----C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDI----D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l----~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +  ..+. +.    +.+.++++.+++    .  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~  207 (271)
T PRK14238        128 GPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE  207 (271)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH
Confidence            2  1222 11    123455666543    1  35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++|+++. + +.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus       208 ~~l~~~~-~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~  256 (271)
T PRK14238        208 ELVQELK-K-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN  256 (271)
T ss_pred             HHHHHHH-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence            9999875 3 68999999999999999999999999999999999887643

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=5.5e-36  Score=263.44  Aligned_cols=168  Identities=21%  Similarity=0.227  Sum_probs=139.7

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc-------c--cEEEecccCCCCccCcHHHHHh-ccC-
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR-------R--EVAFAGFEVPIQMDVSAEKMIF-GVA-   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~-------~--~i~~v~~~~~~~~~lt~~~~~~-~~~-   60 (259)
                      +||+++|+|+||||||||           +++|+|.++|.++.       .  .++|++|++.+++.++..+++. ... 
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~  111 (252)
T CHL00131         32 KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS  111 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhh
Confidence            799999999999999999           26899999997642       1  3678889888888788766432 110 


Q ss_pred             -----C---CC----HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           61 -----G---ID----PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        61 -----~---~~----~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                           .   ..    .+++.++++.+++.   .++++. +|||||+||++||+||+.+|++|||||||+|||+.++..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  191 (252)
T CHL00131        112 KRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA  191 (252)
T ss_pred             hhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence                 1   11    12346788888885   256676 59999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~  171 (259)
                      +.|+++.+ .|.|||++||+++++..+ ||++++|++|+++..|+++.
T Consensus       192 ~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        192 EGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             HHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence            99999864 589999999999999887 89999999999999998873

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-36  Score=264.86  Aligned_cols=156  Identities=25%  Similarity=0.339  Sum_probs=138.5

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK   72 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~   72 (259)
                      -+||.++|+|.||||||||         +++|+|.+.|+++...-              .        ....+++.++++
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------------~--------~~~~~~v~elL~   94 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------------K--------EERRERVLELLE   94 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------------h--------hHHHHHHHHHHH
Confidence            3799999999999999999         59999999998742210              0        011345788999


Q ss_pred             HcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           73 VLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        73 ~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      .+|+.   ..+.+++|||||+||++|||||+.+|+++++|||+++||...+.++.++|.++.++.|.|.+++|||+..+.
T Consensus        95 ~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~  174 (268)
T COG4608          95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR  174 (268)
T ss_pred             HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence            99985   468899999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             ccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989          150 NWPSHIVYVAHGKLQLAMPMDKVKEASKLS  179 (259)
Q Consensus       150 ~~~drv~~l~~G~i~~~g~~~~~~~~~~~~  179 (259)
                      .+||||++|..|+|++.|+.+++.......
T Consensus       175 ~isdri~VMy~G~iVE~g~~~~~~~~p~Hp  204 (268)
T COG4608         175 YISDRIAVMYLGKIVEIGPTEEVFSNPLHP  204 (268)
T ss_pred             hhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence            999999999999999999999998855443

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=4e-36  Score=259.31  Aligned_cols=162  Identities=19%  Similarity=0.241  Sum_probs=134.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++........+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~  107 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDE  107 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCCCCHH
Confidence            699999999999999999         4899999999753        356999999887665 4777765432223344


Q ss_pred             HHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++.+++.             .+.++.+||+||+||++|||||+.+|+++||||||+|||+.++..+++.|+++. 
T Consensus       108 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-  186 (221)
T cd03244         108 ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-  186 (221)
T ss_pred             HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence            455555555542             135688999999999999999999999999999999999999999999999874 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      + +.|||++||+++++.. ||++++|++|+++..|+
T Consensus       187 ~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         187 K-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             C-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            3 6899999999999986 99999999999988765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=2.6e-36  Score=251.85  Aligned_cols=133  Identities=26%  Similarity=0.458  Sum_probs=120.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++.         
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------   95 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK---------   95 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---------
Confidence            799999999999999999         4899999999754       356899999988777777765431         


Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                                        |||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus        96 ------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~  156 (173)
T cd03230          96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE  156 (173)
T ss_pred             ------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH
Confidence                              9999999999999999999999999999999999999999999998764 899999999999


Q ss_pred             HHhccCCeEEEEeCCeE
Q 024989          147 GLENWPSHIVYVAHGKL  163 (259)
Q Consensus       147 ~~~~~~drv~~l~~G~i  163 (259)
                      ++..+||++++|++|++
T Consensus       157 ~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         157 EAERLCDRVAILNNGRI  173 (173)
T ss_pred             HHHHhCCEEEEEeCCCC
Confidence            99999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.9e-36  Score=272.81  Aligned_cols=170  Identities=20%  Similarity=0.230  Sum_probs=143.5

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||.++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.++. .|+.+++. 
T Consensus       107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~  185 (329)
T PRK14257        107 RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAY  185 (329)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHh
Confidence            7999999999999999992              389999999875          346999999988775 67766543 


Q ss_pred             cc--CCCCH-H----HHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGIDP-Q----RRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~~~-~----~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      +.  .+.+. +    .+.++++.+++.      .+++..+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~  265 (329)
T PRK14257        186 GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE  265 (329)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence            22  22222 1    245677777762      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+++.+  ++|||++||+++++.++||||++|++|++++.|+++++...
T Consensus       266 ~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~  314 (329)
T PRK14257        266 ELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH  314 (329)
T ss_pred             HHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99998753  68999999999999999999999999999999999998754

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-36  Score=268.06  Aligned_cols=170  Identities=21%  Similarity=0.229  Sum_probs=142.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~   58 (259)
                      +||+++|+|+||||||||         +     ++|+|.++|.++         ++.++|++|++.+++ .|+.+++. .
T Consensus        46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~  124 (276)
T PRK14271         46 ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAG  124 (276)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHH
Confidence            799999999999999999         2     499999999653         346899999987777 67776542 2


Q ss_pred             c--CC-CCHH----HHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 V--AG-IDPQ----RRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 ~--~~-~~~~----~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      .  .. .+..    .+.++++.+++.      .++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~  204 (276)
T PRK14271        125 VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE  204 (276)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            1  11 1222    235677888874      245688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|+++.+  ++|||++||+++++.++|||+++|++|+++..|+++++.+.
T Consensus       205 ~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  252 (276)
T PRK14271        205 FIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS  252 (276)
T ss_pred             HHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9998853  48999999999999999999999999999999999988653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2.2e-36  Score=258.09  Aligned_cols=154  Identities=22%  Similarity=0.334  Sum_probs=130.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+++.+|+.+++. .  
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~  102 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK  102 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence            799999999999999999         4899999999862            246999999988888888876542 1  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  182 (206)
T TIGR03608       103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND  182 (206)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence            11222    23456789999985  4678899999999999999999999999999999999999999999999999875


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEE
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                       .|.|||++||+++.+ .+||++++|
T Consensus       183 -~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       183 -EGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             -cCCEEEEEeCCHHHH-hhcCEEEeC
Confidence             489999999999976 579999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-36  Score=263.25  Aligned_cols=169  Identities=21%  Similarity=0.214  Sum_probs=141.7

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+++. |+.+++. 
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~  109 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAY  109 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHh
Confidence            7999999999999999992              279999999763          2358999999887764 7776542 


Q ss_pred             c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .  ..+. ..    +.+.++++.+++.      .++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~  189 (253)
T PRK14261        110 GPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE  189 (253)
T ss_pred             hHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            2  1121 11    2345677777762      35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+++++  ++|||++||+++++.++||++++|++|+++..|+++++..
T Consensus       190 ~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  237 (253)
T PRK14261        190 DLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE  237 (253)
T ss_pred             HHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence            99998853  5899999999999999999999999999999999988764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=5.9e-36  Score=259.64  Aligned_cols=160  Identities=18%  Similarity=0.320  Sum_probs=131.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-c--cCCCCH----HH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP----QR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~----~~   66 (259)
                      +||+++|+||||||||||         +++|+|.++|.+..    +......+++.+|+.+++. .  ..+.+.    ++
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~  122 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS----LLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK  122 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch----hhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence            799999999999999999         48999999997642    1112233456678876542 1  122222    23


Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +.++++.+++.  .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.++++|.++++ .|.|||++||+
T Consensus       123 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sH~  201 (224)
T cd03220         123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHD  201 (224)
T ss_pred             HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            56678888885  3678899999999999999999999999999999999999999999999999876 48999999999


Q ss_pred             hhHHhccCCeEEEEeCCeEEEec
Q 024989          145 FDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      ++++..+||++++|++|+++..|
T Consensus       202 ~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         202 PSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999998654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-36  Score=247.08  Aligned_cols=170  Identities=26%  Similarity=0.351  Sum_probs=149.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee--------------ccccEEEecccCCCCccCcHHHHHhc-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE--------------WRREVAFAGFEVPIQMDVSAEKMIFG-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~--------------~~~~i~~v~~~~~~~~~lt~~~~~~~-   58 (259)
                      +||.+.++||||+|||||         +.+|+..+.|..              +++++|+++|+..+++.+|+.+++.. 
T Consensus        27 ~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea  106 (242)
T COG4161          27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA  106 (242)
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh
Confidence            799999999999999999         589999998853              25679999999999999998765532 


Q ss_pred             ---cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           59 ---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        59 ---~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                         ..+.+.    .+..++++++.+.  .++.+-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|++
T Consensus       107 p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iike  186 (242)
T COG4161         107 PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE  186 (242)
T ss_pred             hHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence               223332    3456788888885  4778889999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +.. .|.|-+++||..+.+.+++.+|+.|.+|+|++.|+.+-..
T Consensus       187 l~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft  229 (242)
T COG4161         187 LAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence            975 6999999999999999999999999999999999887654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=2.5e-36  Score=253.54  Aligned_cols=137  Identities=26%  Similarity=0.460  Sum_probs=119.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccc--------cEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR--------EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~--------~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.++..        .++|++|                       
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-----------------------   80 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-----------------------   80 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------------------
Confidence            799999999999999999         489999999976421        1222222                       


Q ss_pred             HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           66 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        66 ~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                          +++.+++.  .++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++||
T Consensus        81 ----~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh  156 (180)
T cd03214          81 ----ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH  156 (180)
T ss_pred             ----HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                67777774  356789999999999999999999999999999999999999999999999986544899999999


Q ss_pred             ChhHHhccCCeEEEEeCCeEEEe
Q 024989          144 IFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       144 ~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      +++++.++||++++|++|+++..
T Consensus       157 ~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         157 DLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             CHHHHHHhCCEEEEEECCEEEec
Confidence            99999999999999999998764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.7e-35  Score=259.65  Aligned_cols=169  Identities=19%  Similarity=0.205  Sum_probs=136.8

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh----c
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF----G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~----~   58 (259)
                      +||+++|+||||||||||           +++|+|.++|.++.         ..++|++|++.+++.++...+..    .
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~  105 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA  105 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhh
Confidence            699999999999999999           35899999997531         35899999877766655433211    0


Q ss_pred             c---CC---CC----HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           59 V---AG---ID----PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        59 ~---~~---~~----~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      .   ..   ..    .+.+.++++.+++.   .++++. +||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~  185 (248)
T PRK09580        106 VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA  185 (248)
T ss_pred             hhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH
Confidence            0   01   11    12345677888874   244554 79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~~  172 (259)
                      +.|+++++ .|+|||++||+++++..+ ||++++|++|+++..|+.+.+
T Consensus       186 ~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        186 DGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            99998864 589999999999999987 899999999999999987744

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=5.8e-36  Score=295.59  Aligned_cols=169  Identities=24%  Similarity=0.300  Sum_probs=142.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++        |+++||++|++.+|... +.+++ ++....+.
T Consensus       498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gS-I~eNi~l~~p~~~~  576 (709)
T COG2274         498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS-IRENIALGNPEATD  576 (709)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCc-HHHHHhcCCCCCCH
Confidence            699999999999999999         5899999999864        68899999998887664 55544 45444454


Q ss_pred             HHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.+++...+..         .    ...-..||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.+..
T Consensus       577 e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~  656 (709)
T COG2274         577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL  656 (709)
T ss_pred             HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence            5555554444331         1    23446899999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||.+..+.. ||||++|++|+++.+|+.+++.+.
T Consensus       657 --~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         657 --QGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             --cCCeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHHHh
Confidence              47999999999998876 999999999999999999999875

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=8.9e-36  Score=291.07  Aligned_cols=169  Identities=21%  Similarity=0.315  Sum_probs=143.3

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~   65 (259)
                      +||.++|+||||||||||        +++|+|.++|.++        ++.++|++|++.+|.. |+++++ ++....+.+
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~e  453 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPDASDE  453 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCCCCHH
Confidence            799999999999999999        5899999999764        5679999999988876 666655 443445666


Q ss_pred             HHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++..++.         .+    ..-.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++. 
T Consensus       454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-  532 (588)
T PRK11174        454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-  532 (588)
T ss_pred             HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-
Confidence            666666665541         12    2345799999999999999999999999999999999999999999998874 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       533 -~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~  573 (588)
T PRK11174        533 -RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA  573 (588)
T ss_pred             -CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhc
Confidence             47999999999988875 999999999999999999998754

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-35  Score=261.45  Aligned_cols=171  Identities=18%  Similarity=0.226  Sum_probs=142.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcC------eec--------cccEEEecccCCCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLG------GEW--------RREVAFAGFEVPIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G------~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~   58 (259)
                      +||+++|+|+||||||||         +++|+|.++|      .+.        ++.++|++|++.+++.+|+.+++. .
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~  114 (257)
T PRK14246         35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP  114 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence            799999999999999999         3676666555      332        356899999988888888876543 2


Q ss_pred             c--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 V--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 ~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      .  .+. ..    +++.++++.+++.      .++.+..||+|||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~  194 (257)
T PRK14246        115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK  194 (257)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence            1  121 22    2346778888873      356789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|.+++ + +.|||++||+++++..+||++++|++|+++..|+.+++.+.
T Consensus       195 ~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~  242 (257)
T PRK14246        195 LITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS  242 (257)
T ss_pred             HHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999885 3 68999999999999999999999999999999999888653

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=7.3e-36  Score=250.26  Aligned_cols=135  Identities=27%  Similarity=0.365  Sum_probs=119.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHhccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIFGVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++.+++.+|+.+++...    
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~----  100 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----  100 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----
Confidence            799999999999999999         4899999999753          24589999988777777776543210    


Q ss_pred             HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                                           ||||||||++||+||+.+|+++||||||+|||+.++..++++|++++++.|.|+|++||
T Consensus       101 ---------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  159 (178)
T cd03229         101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             ---------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                                 99999999999999999999999999999999999999999999987644899999999


Q ss_pred             ChhHHhccCCeEEEEeCCe
Q 024989          144 IFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       144 ~~~~~~~~~drv~~l~~G~  162 (259)
                      +++++..+||++++|++|+
T Consensus       160 ~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         160 DLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CHHHHHHhcCEEEEEeCCC
Confidence            9999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.8e-36  Score=255.47  Aligned_cols=155  Identities=21%  Similarity=0.272  Sum_probs=134.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCC-C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG-I   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~-~   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|+..+++.+|+.+++. .  ..+ .
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  105 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPG  105 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCcc
Confidence            799999999999999999         4899999999764       346899998888888888877552 1  222 2


Q ss_pred             CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           63 DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                      ..+++.++++.+++.  .++++.+||||||||++||+||+++|+++||||||+|||+.++..++++|+++++ .|.|||+
T Consensus       106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii  184 (204)
T PRK13538        106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVIL  184 (204)
T ss_pred             HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence            335567899999985  4678899999999999999999999999999999999999999999999999865 5899999


Q ss_pred             EeCChhHHhccCCeEEEE
Q 024989          141 ATHIFDGLENWPSHIVYV  158 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l  158 (259)
                      +||+++++..+.+|++++
T Consensus       185 ~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        185 TTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             EecChhhhccCCceEEec
Confidence            999999999988888776

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-36  Score=282.99  Aligned_cols=171  Identities=20%  Similarity=0.342  Sum_probs=146.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee--------ccccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE--------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~--------~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +|+.++|+|+||||||||         +++|+|.++|.+        |+++++|++|++.+|...-.+++.++....+.+
T Consensus       346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e  425 (559)
T COG4988         346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE  425 (559)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHH
Confidence            799999999999999999         489999999975        568899999998888765444444554445667


Q ss_pred             HHHHHHHHcCCC--------ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           66 RRAELIKVLDID--------LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        66 ~~~~~l~~~~l~--------~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      ++.++++..++.        .+..+    ..|||||+|||++||||+++++++||||||++||.++.+.+.+.|.++++ 
T Consensus       426 ~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-  504 (559)
T COG4988         426 EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-  504 (559)
T ss_pred             HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-
Confidence            777888777652        12223    45999999999999999999999999999999999999999999999864 


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                       ++|+|++||++..+.. ||+|++|++|++++.|+.+++.++.
T Consensus       505 -~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~  545 (559)
T COG4988         505 -QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQ  545 (559)
T ss_pred             -CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcC
Confidence             5899999999999887 8999999999999999999997653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=1.4e-35  Score=253.03  Aligned_cols=145  Identities=20%  Similarity=0.258  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhccCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFGVAGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~   62 (259)
                      +||+++|+|+||||||||           +++|+|.++|.++         +..++|++|++.+++.+++.+++      
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------   98 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL------   98 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH------
Confidence            799999999999999998           3789999999764         12489999987777766655433      


Q ss_pred             CHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           63 DPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                                      +....+|||||+||++||+||+.+|+++||||||+|||+.++..+++.|+++++ .|.|||++|
T Consensus        99 ----------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~s  161 (200)
T cd03217          99 ----------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIIT  161 (200)
T ss_pred             ----------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence                            112368999999999999999999999999999999999999999999999864 589999999


Q ss_pred             CChhHHhc-cCCeEEEEeCCeEEEecChh
Q 024989          143 HIFDGLEN-WPSHIVYVAHGKLQLAMPMD  170 (259)
Q Consensus       143 H~~~~~~~-~~drv~~l~~G~i~~~g~~~  170 (259)
                      |+++++.. +||++++|++|++++.++.+
T Consensus       162 h~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         162 HYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             cCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            99999988 79999999999999988443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=260.65  Aligned_cols=169  Identities=20%  Similarity=0.221  Sum_probs=142.3

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+||||||||||.              ++|+|.++|.++          ++.++|++|++.+|+. |+.+++. 
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~  106 (250)
T PRK14266         28 KNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAY  106 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHh
Confidence            7999999999999999992              689999999764          2459999999887765 6665442 


Q ss_pred             cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                      ..  .+. +.    +++.++++.+++.      .++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~  186 (250)
T PRK14266        107 GLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE  186 (250)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH
Confidence            21  111 21    3345677888762      25678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++|++++ + |.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       187 ~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14266        187 DLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI  234 (250)
T ss_pred             HHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence            9999884 3 7899999999999999999999999999999999988754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=7.9e-36  Score=248.98  Aligned_cols=130  Identities=25%  Similarity=0.320  Sum_probs=115.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++. |+.+++         
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l---------   96 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI---------   96 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC---------
Confidence            799999999999999999         4899999999754        3568999988766653 655432         


Q ss_pred             HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                                         ||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++||++
T Consensus        97 -------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~  156 (173)
T cd03246          97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRP  156 (173)
T ss_pred             -------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence                               999999999999999999999999999999999999999999999865 589999999999


Q ss_pred             hHHhccCCeEEEEeCCeE
Q 024989          146 DGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       146 ~~~~~~~drv~~l~~G~i  163 (259)
                      +++. +||++++|++|++
T Consensus       157 ~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         157 ETLA-SADRILVLEDGRV  173 (173)
T ss_pred             HHHH-hCCEEEEEECCCC
Confidence            9885 7999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.1e-36  Score=249.27  Aligned_cols=168  Identities=24%  Similarity=0.349  Sum_probs=147.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHH-hcc--CCCCH---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP---   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~---   64 (259)
                      +||+++++||||||||||         ++.|+|.++|..+.   ..-|.|+|+..++|.+++.++. +++  .++++   
T Consensus        30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R  109 (259)
T COG4525          30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR  109 (259)
T ss_pred             CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence            699999999999999999         58999999998653   3468899999999999876543 543  45543   


Q ss_pred             -HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           65 -QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        65 -~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                       +.+.+.+..+|+.  .++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++|-++.++.|+.+++|
T Consensus       110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli  189 (259)
T COG4525         110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI  189 (259)
T ss_pred             HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence             2345678888885  4678999999999999999999999999999999999999999999999999999899999999


Q ss_pred             eCChhHHhccCCeEEEEe--CCeEEEecChh
Q 024989          142 THIFDGLENWPSHIVYVA--HGKLQLAMPMD  170 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~--~G~i~~~g~~~  170 (259)
                      ||+++++.-+++|+++|.  .|+++...+++
T Consensus       190 TH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         190 THDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             eccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            999999999999999998  48999887776

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.4e-35  Score=255.37  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=134.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh---ccCCCC-H
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF---GVAGID-P   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~-~   64 (259)
                      +||+++|+|+||||||||         +++|+|.++|+++     ++.++|++|.+.+++.+|+.+++.   ..++.. .
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~  115 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK  115 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence            799999999999999999         4899999999764     235899999877787788876542   222222 2


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      +...++++.+++.  .++++.+||+|||||++||+|++.+|++|||||||++||+.+++.++++|+++.+ .|.|||++|
T Consensus       116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s  194 (214)
T PRK13543        116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTT  194 (214)
T ss_pred             HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence            4456788889885  4678899999999999999999999999999999999999999999999998865 589999999


Q ss_pred             CChhHHhccCCeEEEEeC
Q 024989          143 HIFDGLENWPSHIVYVAH  160 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~  160 (259)
                      |+++++.++||++++|+.
T Consensus       195 H~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        195 HGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             cChhhhhhhcceEEEEee
Confidence            999999999999999864

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-35  Score=260.45  Aligned_cols=167  Identities=17%  Similarity=0.254  Sum_probs=140.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-c--cCCCCHH----H
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDPQ----R   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~~----~   66 (259)
                      +||+++|+||||||||||         +++|+|.++|.     ++++++...+++.+|+.+++. .  ..+.+.+    .
T Consensus        49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-----~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~  123 (264)
T PRK13546         49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM  123 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-----EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence            799999999999999999         48999999985     455656655666778776542 1  1233332    2


Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +..+++.+++.  .++++.+||+||+||++||+||+.+|++|||||||+|||+.++..+++.|.++.+ .|.|||++||+
T Consensus       124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~  202 (264)
T PRK13546        124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHN  202 (264)
T ss_pred             HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence            34567777775  4668899999999999999999999999999999999999999999999998864 68999999999


Q ss_pred             hhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++++..+||++++|++|+++..|+.+++...
T Consensus       203 ~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~  233 (264)
T PRK13546        203 LGQVRQFCTKIAWIEGGKLKDYGELDDVLPK  233 (264)
T ss_pred             HHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence            9999999999999999999999999887653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=8.4e-36  Score=250.74  Aligned_cols=137  Identities=25%  Similarity=0.371  Sum_probs=119.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHhccCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIFGVAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~~~~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++   .+++.+|+.+++.... 
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-  103 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-  103 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh-
Confidence            699999999999999999         4899999999754         24689999874   3566677766442110 


Q ss_pred             CCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           62 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        62 ~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                                            .||+|||||++||+||+.+|++|||||||+|||+.+++.+++.|+++++ .|.|||++
T Consensus       104 ----------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~  160 (182)
T cd03215         104 ----------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLI  160 (182)
T ss_pred             ----------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence                                  0999999999999999999999999999999999999999999999865 48999999


Q ss_pred             eCChhHHhccCCeEEEEeCCeE
Q 024989          142 THIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      ||+++++..+||++++|++|++
T Consensus       161 sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         161 SSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             eCCHHHHHHhCCEEEEecCCcC
Confidence            9999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=2e-35  Score=252.20  Aligned_cols=155  Identities=23%  Similarity=0.284  Sum_probs=134.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhcc-CCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~~   65 (259)
                      +||+++|+|+||||||||         +++|+|.++|.+.       ++.++|++|++.+++.+|+.+++... .....+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  104 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE  104 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence            799999999999999999         4899999999764       34689999988888888887765322 112345


Q ss_pred             HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           66 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        66 ~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      ++.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|+++++ .|.|+|++||
T Consensus       105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH  183 (201)
T cd03231         105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTH  183 (201)
T ss_pred             HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence            677899999985  4678899999999999999999999999999999999999999999999998865 5899999999


Q ss_pred             ChhHHhccCCeEEEE
Q 024989          144 IFDGLENWPSHIVYV  158 (259)
Q Consensus       144 ~~~~~~~~~drv~~l  158 (259)
                      +..+...+|++++.+
T Consensus       184 ~~~~~~~~~~~~~~~  198 (201)
T cd03231         184 QDLGLSEAGARELDL  198 (201)
T ss_pred             CchhhhhccceeEec
Confidence            999999999999876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-35  Score=261.20  Aligned_cols=169  Identities=20%  Similarity=0.217  Sum_probs=141.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI   56 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~   56 (259)
                      +||+++|+|+||||||||         +     ++|+|.++|.+.            ++.++|++|++.+++. |+.+++
T Consensus        41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni  119 (265)
T PRK14252         41 EKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENV  119 (265)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHH
Confidence            799999999999999999         1     589999988532            3458999999887775 776654


Q ss_pred             h-cc--CCCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           57 F-GV--AGID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        57 ~-~~--~~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                      . ..  .+..     .+.+.++++.+++.      .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~  199 (265)
T PRK14252        120 AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATAS  199 (265)
T ss_pred             HhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence            2 21  1211     23445677777652      256789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++.|++++ + +.|||++||+++++.++|||+++|++|+++..|+.+++..
T Consensus       200 l~~~l~~l~-~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  249 (265)
T PRK14252        200 IEELISDLK-N-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI  249 (265)
T ss_pred             HHHHHHHHH-h-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999885 3 6899999999999999999999999999999999988754

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=251.12  Aligned_cols=173  Identities=21%  Similarity=0.329  Sum_probs=146.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccC----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA----   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~----   60 (259)
                      .||+++|+||||+|||||         +++|++.++|.+.        .+.-+.+||+..+-+.+|+.+.+ +|..    
T Consensus        26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~  105 (259)
T COG4559          26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS  105 (259)
T ss_pred             CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence            699999999999999999         4899999999753        34567899998887778888865 3321    


Q ss_pred             CCC--H--HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           61 GID--P--QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        61 ~~~--~--~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      +-.  .  +-.++++...++.  ..+...+|||||||||.+||.|++      ++++|+|||||+.||+..+..++++.+
T Consensus       106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR  185 (259)
T COG4559         106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR  185 (259)
T ss_pred             CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence            111  1  1246788888875  356788999999999999999975      345999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      +++++ |..|+.|-||++.+..+||||++|++||+++.|+++++....
T Consensus       186 ~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E  232 (259)
T COG4559         186 QLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE  232 (259)
T ss_pred             HHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH
Confidence            99975 899999999999999999999999999999999999987643

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-36  Score=252.73  Aligned_cols=173  Identities=24%  Similarity=0.381  Sum_probs=153.8

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccC----
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA----   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~----   60 (259)
                      +|.+++|+||||+|||||+         ++|+|.++|.++        .+.++..-|+..+...+|++++. ||.+    
T Consensus        26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq  105 (252)
T COG4604          26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ  105 (252)
T ss_pred             CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence            7999999999999999993         899999999864        34567777888888889999865 4432    


Q ss_pred             C-C---CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 G-I---DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~-~---~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      | .   ++..++++++.+++.  .++...+||||||||.-||..++++.+.++||||.++||......+++.|++++++.
T Consensus       106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el  185 (252)
T COG4604         106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL  185 (252)
T ss_pred             CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh
Confidence            1 1   234467899999985  478899999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |+||+++-||++++..++|+|+-|++|+++..|+++++...
T Consensus       186 ~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~  226 (252)
T COG4604         186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP  226 (252)
T ss_pred             CCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence            99999999999999999999999999999999999998764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.8e-35  Score=247.71  Aligned_cols=136  Identities=24%  Similarity=0.385  Sum_probs=119.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.       ++.++|++|++.+++ .|+.+++          
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i----------   95 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL----------   95 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh----------
Confidence            799999999999999999         4899999999753       356899998876654 4554432          


Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                                     +.+||+||+||++|||||+.+|++|||||||+|||+.+++.+++.|+++.  +|.|||++||+++
T Consensus        96 ---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~  158 (178)
T cd03247          96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLT  158 (178)
T ss_pred             ---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH
Confidence                           67999999999999999999999999999999999999999999999874  3899999999999


Q ss_pred             HHhccCCeEEEEeCCeEEEec
Q 024989          147 GLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       147 ~~~~~~drv~~l~~G~i~~~g  167 (259)
                      ++. .||++++|++|++++.|
T Consensus       159 ~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         159 GIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             HHH-hCCEEEEEECCEEEecC
Confidence            997 69999999999998653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.2e-35  Score=252.93  Aligned_cols=155  Identities=22%  Similarity=0.299  Sum_probs=132.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh---ccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF---GVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.     ++.++|++|+..+++.+|+.+++.   ...+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~  106 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEEL  106 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHH
Confidence            799999999999999999         4899999999763     446899998877777888876542   12233345


Q ss_pred             HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           66 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        66 ~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      ++.++++.+++.  .++++++||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||
T Consensus       107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH  185 (207)
T PRK13539        107 DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATH  185 (207)
T ss_pred             HHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence            578899999985  3678899999999999999999999999999999999999999999999998865 5999999999


Q ss_pred             ChhHHhccCCeEEEEeC
Q 024989          144 IFDGLENWPSHIVYVAH  160 (259)
Q Consensus       144 ~~~~~~~~~drv~~l~~  160 (259)
                      +++++..  |+++.+..
T Consensus       186 ~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        186 IPLGLPG--ARELDLGP  200 (207)
T ss_pred             Cchhhcc--CcEEeecC
Confidence            9999987  88887743

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.7e-35  Score=251.71  Aligned_cols=151  Identities=22%  Similarity=0.228  Sum_probs=126.7

Q ss_pred             CCcEEEEEcCCCCCccccC------------CceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCC
Q 024989            3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~   63 (259)
                      +||+++|+||||||||||.            ++|+|.++|.+.       ++.++|++|+..+++.+|+.+++....   
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~---  108 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL---  108 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh---
Confidence            7999999999999999992            589999999764       345899999888888888877653110   


Q ss_pred             HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE-Ee
Q 024989           64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY-AT  142 (259)
Q Consensus        64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii-~s  142 (259)
                        ..         ..++++.+||+||+||++||+||+.+|++|||||||+|||+.+++.+++.|++++++.+.|+|+ ++
T Consensus       109 --~~---------~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~  177 (202)
T cd03233         109 --RC---------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY  177 (202)
T ss_pred             --hh---------ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence              00         0466789999999999999999999999999999999999999999999999987654666555 55


Q ss_pred             CChhHHhccCCeEEEEeCCeEEEec
Q 024989          143 HIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |+.+++.++||++++|++|+++..|
T Consensus       178 h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         178 QASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             CCHHHHHHhCCeEEEEECCEEEecC
Confidence            6678999999999999999998653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.7e-35  Score=251.02  Aligned_cols=144  Identities=22%  Similarity=0.290  Sum_probs=125.1

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeec----cccEEEecccCCCCccCcHHHHHhccCCCCHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~   67 (259)
                      +||+++|+||||||||||           +++|+|.++|+++    ++.++|++|++.+++.+|+.+++...        
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~--------  103 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFS--------  103 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHH--------
Confidence            699999999999999999           2699999999874    45699999988888888887655310        


Q ss_pred             HHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-
Q 024989           68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-  146 (259)
Q Consensus        68 ~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~-  146 (259)
                       ..+           .+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||+++ 
T Consensus       104 -~~~-----------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~  170 (192)
T cd03232         104 -ALL-----------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSA  170 (192)
T ss_pred             -HHH-----------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChH
Confidence             000           19999999999999999999999999999999999999999999999865 5899999999998 


Q ss_pred             HHhccCCeEEEEeC-CeEEEec
Q 024989          147 GLENWPSHIVYVAH-GKLQLAM  167 (259)
Q Consensus       147 ~~~~~~drv~~l~~-G~i~~~g  167 (259)
                      ++..+||++++|++ |++++.|
T Consensus       171 ~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         171 SIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHHhhCCEEEEEcCCCeEEeCC
Confidence            47889999999999 9998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=282.76  Aligned_cols=169  Identities=19%  Similarity=0.234  Sum_probs=139.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccC---CCCccCcHHHH-----H
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEV---PIQMDVSAEKM-----I   56 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~---~~~~~lt~~~~-----~   56 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.         +.++|++|+.   .+++.+++.++     +
T Consensus       273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  352 (491)
T PRK10982        273 KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI  352 (491)
T ss_pred             CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhh
Confidence            799999999999999999         48999999997642         3489998874   35666665432     1


Q ss_pred             h-c--cCCC-C----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           57 F-G--VAGI-D----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        57 ~-~--~~~~-~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                      . .  ..+. +    .+.+.++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~  432 (491)
T PRK10982        353 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ  432 (491)
T ss_pred             hhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH
Confidence            1 1  1121 1    13356788888883   367899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      +|.++++ .|.|||++|||++++..+|||+++|++|+++..++.++.
T Consensus       433 ~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~  478 (491)
T PRK10982        433 LIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT  478 (491)
T ss_pred             HHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            9999875 599999999999999999999999999999987766543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-35  Score=265.20  Aligned_cols=169  Identities=21%  Similarity=0.237  Sum_probs=140.5

Q ss_pred             CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-   57 (259)
                      +||+++|+|+||||||||.              ++|+|.++|.++          ++.++|++|++.+++ .|+.+++. 
T Consensus        70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~  148 (305)
T PRK14264         70 EKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISY  148 (305)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHh
Confidence            7999999999999999992              599999999753          245899999887776 47776542 


Q ss_pred             ccC--------------CCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 024989           58 GVA--------------GID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT  112 (259)
Q Consensus        58 ~~~--------------~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt  112 (259)
                      +..              +..     .+.+.++++.+++.      .++++.+||||||||++||+||+++|++|||||||
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPt  228 (305)
T PRK14264        149 GPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA  228 (305)
T ss_pred             HHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            210              111     12356678888762      25678999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE-EEEeCCeEEEecChhHHHH
Q 024989          113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI-VYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       113 ~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv-~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|||+.++..++++|+++++  +.|||++||+++++..+||++ ++|++|+++..|+++++..
T Consensus       229 sgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~  289 (305)
T PRK14264        229 SALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE  289 (305)
T ss_pred             ccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence            99999999999999999864  489999999999999999996 5789999999999988754

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.2e-35  Score=313.23  Aligned_cols=173  Identities=20%  Similarity=0.280  Sum_probs=152.5

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGI   62 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~   62 (259)
                      -+||+++|+||||||||||         +++|+|.++|.++       ++.+||++|+..+++.+|+.+++.   ..++.
T Consensus       954 ~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~ 1033 (2272)
T TIGR01257       954 YENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR 1033 (2272)
T ss_pred             cCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC
Confidence            3799999999999999999         5899999999864       356999999998999999987652   22333


Q ss_pred             C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           63 D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        63 ~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      +    .+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++ + .|+
T Consensus      1034 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~-~g~ 1111 (2272)
T TIGR01257      1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-R-SGR 1111 (2272)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCC
Confidence            3    23467789999986  46789999999999999999999999999999999999999999999999998 3 489


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |||++||+++++..+||||++|++|+++..|+++++.+..
T Consensus      1112 TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1112 TIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred             EEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence            9999999999999999999999999999999999987643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=5.8e-35  Score=258.25  Aligned_cols=168  Identities=15%  Similarity=0.189  Sum_probs=135.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+++. |+.+++.........
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~  124 (257)
T cd03288          46 PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECKCTDD  124 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCCCCHH
Confidence            799999999999999999         4899999999764        3468999998877654 666554321111222


Q ss_pred             HHHHHHHH---------c--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKV---------L--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~---------~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ...++++.         +  ++.  .+.++.+||+||+||++|||||+.+|++|||||||+|||+.++..+++.++++. 
T Consensus       125 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-  203 (257)
T cd03288         125 RLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-  203 (257)
T ss_pred             HHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-
Confidence            23333332         2  222  234568999999999999999999999999999999999999999999998863 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       .+.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus       204 -~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~  243 (257)
T cd03288         204 -ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA  243 (257)
T ss_pred             -CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence             38999999999999986 99999999999999999888764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=4.1e-35  Score=253.63  Aligned_cols=156  Identities=26%  Similarity=0.346  Sum_probs=131.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEc--Ce--ec------------cccEEEecccCCCCccCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYL--GG--EW------------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~--G~--~~------------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      +||+++|+||||||||||         +++|+|.++  |.  +.            ++.++|++|++.+++.+|+.+++.
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~  112 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA  112 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHH
Confidence            799999999999999999         489999998  42  21            235899999988888888877543


Q ss_pred             c---cCCCC----HHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           58 G---VAGID----PQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        58 ~---~~~~~----~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                      .   ..+..    .+++.++++.+++..   +.++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  192 (224)
T TIGR02324       113 EPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI  192 (224)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            1   12222    234567889898852   5678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      +++++ .|+|||++||+++++..+||+++.+.
T Consensus       193 ~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       193 AEAKA-RGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             HHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence            99865 58999999999999999999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=2.3e-35  Score=255.55  Aligned_cols=158  Identities=23%  Similarity=0.311  Sum_probs=129.7

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGID   63 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~   63 (259)
                      -+||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. ......
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~  116 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCS  116 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCC
Confidence            3799999999999999999         4899999999753        346999999877665 47766553 222111


Q ss_pred             HH----H-----HHHHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQ----R-----RAELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~----~-----~~~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      ..    .     ..++++.+  ++.  .+.++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++
T Consensus       117 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  196 (226)
T cd03248         117 FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW  196 (226)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            11    1     23566777  554  36678999999999999999999999999999999999999999999999987


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      + + +.|||++||+++++.. ||++++|++|++
T Consensus       197 ~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~i  226 (226)
T cd03248         197 P-E-RRTVLVIAHRLSTVER-ADQILVLDGGRI  226 (226)
T ss_pred             c-C-CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence            5 3 6899999999999975 999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.1e-36  Score=259.70  Aligned_cols=174  Identities=32%  Similarity=0.496  Sum_probs=145.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-------ccEEEec-ccCCCCccCcHH------HHHhcc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-------REVAFAG-FEVPIQMDVSAE------KMIFGV   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-------~~i~~v~-~~~~~~~~lt~~------~~~~~~   59 (259)
                      +|++++.+|+||+||||+         |++|.|.++|.+..       ++++++. |...+..++.+.      ..++..
T Consensus        49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~I  128 (325)
T COG4586          49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEI  128 (325)
T ss_pred             CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhC
Confidence            799999999999999998         69999999998642       3466653 444443333332      223322


Q ss_pred             CC-CCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           60 AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        60 ~~-~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      .. .-.++.+.+.+.++++  .+++++.||-|||+|+.||.+|+|+|++|+|||||-|||...+..+.++|++++++++.
T Consensus       129 pd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~a  208 (325)
T COG4586         129 PDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA  208 (325)
T ss_pred             CHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCc
Confidence            21 1134566788888887  68999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      ||+++||+++.+..+||||++|+.|+++.+|+.+++.+..
T Consensus       209 TVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f  248 (325)
T COG4586         209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF  248 (325)
T ss_pred             eEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence            9999999999999999999999999999999999987653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.6e-35  Score=289.77  Aligned_cols=166  Identities=23%  Similarity=0.276  Sum_probs=141.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+++++ ++.. .+.
T Consensus       478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-~~~  555 (686)
T TIGR03797       478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-LTL  555 (686)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC-CCH
Confidence            799999999999999999         5899999999864        4679999999988866 566665 3433 566


Q ss_pred             HHHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+.    ...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++ 
T Consensus       556 e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-  634 (686)
T TIGR03797       556 DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL-  634 (686)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence            7777777777652         122    23579999999999999999999999999999999999999999998764 


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                         ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       635 ---~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~  674 (686)
T TIGR03797       635 ---KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR  674 (686)
T ss_pred             ---CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence               5799999999998876 999999999999999999998753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-35  Score=282.34  Aligned_cols=165  Identities=16%  Similarity=0.223  Sum_probs=141.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCC--CCccCcHHHHHhccC--CCCHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVA--GIDPQRRAE   69 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~--~~~~lt~~~~~~~~~--~~~~~~~~~   69 (259)
                      +||+++|+||||||||||         +++|+|.++|.   +.++|++|++.  +++.+|+.+++....  ....+++.+
T Consensus       344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~  420 (530)
T PRK15064        344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG  420 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH
Confidence            799999999999999999         48999999874   46999999864  455678877653221  123455778


Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +++.+++.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++    +.|||++|||++
T Consensus       421 ~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~  496 (530)
T PRK15064        421 TLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE  496 (530)
T ss_pred             HHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            99999983   36789999999999999999999999999999999999999999999999864    359999999999


Q ss_pred             HHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989          147 GLENWPSHIVYVAHGKLQ-LAMPMDKVKE  174 (259)
Q Consensus       147 ~~~~~~drv~~l~~G~i~-~~g~~~~~~~  174 (259)
                      ++..+||++++|++|+++ ..|+++++.+
T Consensus       497 ~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  525 (530)
T PRK15064        497 FVSSLATRIIEITPDGVVDFSGTYEEYLR  525 (530)
T ss_pred             HHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence            999999999999999998 7788877654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1e-34  Score=283.94  Aligned_cols=169  Identities=16%  Similarity=0.216  Sum_probs=143.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+|+. |+.+++......+.+
T Consensus       366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~  444 (592)
T PRK10790        366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDISEE  444 (592)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCCCHH
Confidence            799999999999999999         5899999999864        4679999999999887 566655322244566


Q ss_pred             HHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++.+++.         .+    ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. 
T Consensus       445 ~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-  523 (592)
T PRK10790        445 QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-  523 (592)
T ss_pred             HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-
Confidence            677777777652         12    2335799999999999999999999999999999999999999999998864 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       524 -~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~L~~~  564 (592)
T PRK10790        524 -EHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAA  564 (592)
T ss_pred             -CCCEEEEEecchHHHHh-CCEEEEEECCEEEEEcCHHHHHhC
Confidence             36899999999988775 999999999999999999998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=280.47  Aligned_cols=165  Identities=21%  Similarity=0.224  Sum_probs=139.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-cc-------------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GV-------------   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~-------------   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.   ..++|++|++.+++.+|+.+++. +.             
T Consensus        26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  102 (530)
T PRK15064         26 GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRI  102 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence            699999999999999999         48999999874   45999999888888888765432 10             


Q ss_pred             ------------------------CCCC-HHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 024989           60 ------------------------AGID-PQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI  111 (259)
Q Consensus        60 ------------------------~~~~-~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP  111 (259)
                                              .+.. .+++.++++.+++..   ++++.+|||||||||+||+||+.+|++||||||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEP  182 (530)
T PRK15064        103 YALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEP  182 (530)
T ss_pred             hcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                                    0001 234567888899852   357899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989          112 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE  174 (259)
Q Consensus       112 t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~  174 (259)
                      |+|||+.++..+.++|.+    .|.|||+||||++++.++||++++|++|+++ ..|+++++.+
T Consensus       183 t~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        183 TNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             CcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence            999999999999999863    4899999999999999999999999999994 7899887764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=9.4e-35  Score=248.14  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=123.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|     .++|++|++.++ ..|+.+++........+...+.++.
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~  103 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----SIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKA  103 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----EEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHH
Confidence            799999999999999999         5899999998     699999998876 4577776543222233333333433


Q ss_pred             cCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEE
Q 024989           74 LDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATII  139 (259)
Q Consensus        74 ~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tii  139 (259)
                      +++           .  .+.++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+++ ++++..+ .|.|||
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi  182 (204)
T cd03250         104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRI  182 (204)
T ss_pred             cCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEE
Confidence            332           1  234578999999999999999999999999999999999999999998 4666654 489999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCe
Q 024989          140 YATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      ++||+++.+.. ||++++|++|+
T Consensus       183 ~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         183 LVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             EEeCCHHHHhh-CCEEEEEeCCC
Confidence            99999999998 99999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=5.3e-35  Score=248.43  Aligned_cols=143  Identities=22%  Similarity=0.356  Sum_probs=124.1

Q ss_pred             CCcEEEEEcCCCCCcccc-------C----CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL-------T----SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-------~----~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||+++|+||||||||||       .    ++|+|.++|+++     ++.++|++|++.+++.+|+.+++...       
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~-------  106 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFA-------  106 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHH-------
Confidence            699999999999999999       2    589999999864     45699999998888778877644210       


Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                           ..+        .+|||||+||++|||||+.+|+++||||||+|||+.+++.+++.|+++.+ .|+|||++||+++
T Consensus       107 -----~~~--------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~  172 (194)
T cd03213         107 -----AKL--------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPS  172 (194)
T ss_pred             -----HHh--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch
Confidence                 001        19999999999999999999999999999999999999999999999865 4999999999996


Q ss_pred             -HHhccCCeEEEEeCCeEEEe
Q 024989          147 -GLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       147 -~~~~~~drv~~l~~G~i~~~  166 (259)
                       ++..+||++++|++|+++..
T Consensus       173 ~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         173 SEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             HHHHHhcCEEEEEeCCEEEec
Confidence             78899999999999999764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=7.7e-35  Score=290.24  Aligned_cols=167  Identities=21%  Similarity=0.241  Sum_probs=141.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+++++. +....+.
T Consensus       504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~~~~  582 (710)
T TIGR03796       504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPD  582 (710)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCCCCCH
Confidence            799999999999999999         5899999999864        5679999999888765 6676663 3333456


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++  
T Consensus       583 ~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--  660 (710)
T TIGR03796       583 ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--  660 (710)
T ss_pred             HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--
Confidence            6666677666542         12    23467999999999999999999999999999999999999999999874  


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       661 --~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~  701 (710)
T TIGR03796       661 --RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV  701 (710)
T ss_pred             --cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence              37999999999998876 999999999999999999998753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.2e-34  Score=249.92  Aligned_cols=157  Identities=20%  Similarity=0.289  Sum_probs=126.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHhccCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIFGVAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~~~~~   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.++ ..|+.+++.....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~  104 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP  104 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc
Confidence            799999999999999999         4899999999642            24589999988776 5677765532212


Q ss_pred             CCHHHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH--H
Q 024989           62 IDPQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR--F  126 (259)
Q Consensus        62 ~~~~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~--~  126 (259)
                      ...+...++++.+++.             .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++  +
T Consensus       105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~l  184 (218)
T cd03290         105 FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI  184 (218)
T ss_pred             CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence            2333344555555542             134678999999999999999999999999999999999999999998  6


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      ++.+. +.|.|||++||+++++. .||++++|++|+
T Consensus       185 l~~~~-~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         185 LKFLQ-DDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHHh-cCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            66554 46899999999999986 599999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=8.3e-35  Score=283.84  Aligned_cols=169  Identities=21%  Similarity=0.334  Sum_probs=145.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+.+++ ++....+.
T Consensus       365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~  443 (574)
T PRK11160        365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPNASD  443 (574)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCccCH
Confidence            799999999999999999         5899999999864        4579999999888765 666665 44434566


Q ss_pred             HHHHHHHHHcCCCc--c----------ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDIDL--S----------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        65 ~~~~~~l~~~~l~~--~----------~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      +++.++++.+++..  .          ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++. 
T Consensus       444 ~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-  522 (574)
T PRK11160        444 EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-  522 (574)
T ss_pred             HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-
Confidence            77788888887631  1          1346799999999999999999999999999999999999999999999874 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       523 -~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  563 (574)
T PRK11160        523 -QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQ  563 (574)
T ss_pred             -CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhc
Confidence             48999999999998876 999999999999999999998754

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=7.6e-35  Score=283.59  Aligned_cols=169  Identities=22%  Similarity=0.315  Sum_probs=143.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.+++++|++.+|. -|+.+++ ++....+.
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~  432 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATD  432 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCH
Confidence            799999999999999999         4799999999764        577999999999988 4566554 55554556


Q ss_pred             HHHHHHHHHcCC-------C--ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-------D--LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-------~--~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++       +  .+.    ....||||||||++||||++.+|++|||||||++||+.+...+.+.+.++.
T Consensus       433 eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~  512 (567)
T COG1132         433 EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL  512 (567)
T ss_pred             HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence            666665555432       1  122    345799999999999999999999999999999999999999999999765


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        +|+|+|+++|.++.+.. ||+|++|++|++++.|+.+++...
T Consensus       513 --~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~  553 (567)
T COG1132         513 --KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK  553 (567)
T ss_pred             --cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence              46899999999999988 999999999999999999999875

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-35  Score=274.30  Aligned_cols=176  Identities=27%  Similarity=0.361  Sum_probs=152.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-ccC---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GVA---   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~~---   60 (259)
                      +||+++++|.||+|||||         +|+|+|.++|+...         ..|..+.|+..+.+++|+.++++ +..   
T Consensus        33 ~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~  112 (500)
T COG1129          33 PGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR  112 (500)
T ss_pred             CceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence            799999999999999999         69999999998642         34889999999999999987664 321   


Q ss_pred             --C-CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           61 --G-IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        61 --~-~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                        + +++    ++..++++.+++.  ++.++.+||.||||.|+|||||..++++|||||||+.|+....+.++++++++.
T Consensus       113 ~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk  192 (500)
T COG1129         113 RFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK  192 (500)
T ss_pred             CCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence              1 343    3456788888874  678899999999999999999999999999999999999999999999999987


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC-hhHHHHHhhhh
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP-MDKVKEASKLS  179 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~-~~~~~~~~~~~  179 (259)
                      + +|.+||+|||.|+++.++||||.||++|+.+.+.+ ..++.......
T Consensus       193 ~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~  240 (500)
T COG1129         193 A-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVR  240 (500)
T ss_pred             h-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHH
Confidence            5 69999999999999999999999999999999988 46655443333

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-35  Score=280.83  Aligned_cols=171  Identities=22%  Similarity=0.329  Sum_probs=145.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++++||||+||||+         |++|+|.++|.++        +++||+|+|+|.+|.....+++.+|....+.+
T Consensus       493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e  572 (716)
T KOG0058|consen  493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDE  572 (716)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHH
Confidence            699999999999999999         6999999999874        57899999999998765445566777655656


Q ss_pred             HHHHHHHHcC-------CC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLD-------ID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~-------l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++..+.+..+       ++      -..+-.+||||||||++|||||+.+|.||||||.|++||.++...+.+.|.+..+
T Consensus       573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~  652 (716)
T KOG0058|consen  573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ  652 (716)
T ss_pred             HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence            5554444322       11      1234568999999999999999999999999999999999999999999988753


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                        +.|||+|.|.++.+++ ||+|+++++|++++.|+.+|+.+..
T Consensus       653 --~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~  693 (716)
T KOG0058|consen  653 --GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKP  693 (716)
T ss_pred             --CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCc
Confidence              6999999999999987 9999999999999999999998754

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=282.47  Aligned_cols=169  Identities=21%  Similarity=0.283  Sum_probs=142.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCC-CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAG-ID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~-~~   63 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+|+. |+.+++ ++... .+
T Consensus       368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~  446 (582)
T PRK11176        368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTEQYS  446 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCCCCCC
Confidence            799999999999999999         5899999999864        4679999999888865 566655 34332 45


Q ss_pred             HHHHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+++.++++..++.         .+.    .-.+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++
T Consensus       447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~  526 (582)
T PRK11176        447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            66677777766542         122    23569999999999999999999999999999999999999999999886


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       527 ~--~~~tvI~VtHr~~~~~~-~D~Ii~l~~g~i~e~g~~~~l~~~  568 (582)
T PRK11176        527 Q--KNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELLAQ  568 (582)
T ss_pred             h--CCCEEEEEecchHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence            4  37999999999987765 999999999999999999998754

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=8.4e-35  Score=245.84  Aligned_cols=145  Identities=26%  Similarity=0.340  Sum_probs=119.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++. .+...|+.+++. .  .
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~   96 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLN   96 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHH
Confidence            799999999999999999         4899999999764          235899999863 223457766542 2  1


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++++ 
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-  175 (190)
T TIGR01166        97 LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-  175 (190)
T ss_pred             cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence            22222    3456788888885  4678899999999999999999999999999999999999999999999999865 


Q ss_pred             cCcEEEEEeCChhHH
Q 024989          134 RGATIIYATHIFDGL  148 (259)
Q Consensus       134 ~g~tiii~sH~~~~~  148 (259)
                      .|+|||++||+++++
T Consensus       176 ~~~tili~sH~~~~~  190 (190)
T TIGR01166       176 EGMTVVISTHDVDLA  190 (190)
T ss_pred             cCCEEEEEeeccccC
Confidence            589999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.8e-34  Score=287.06  Aligned_cols=168  Identities=24%  Similarity=0.325  Sum_probs=142.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+.+++. +....+.
T Consensus       490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~~~~~  568 (694)
T TIGR03375       490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAPYADD  568 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCCCCCH
Confidence            799999999999999999         5899999999764        5679999999988875 6766654 4333556


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.
T Consensus       569 ~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~  648 (694)
T TIGR03375       569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL  648 (694)
T ss_pred             HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence            6666666666542         11    2345799999999999999999999999999999999999999999999874


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                        .++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus       649 --~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       649 --AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLE  688 (694)
T ss_pred             --CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHH
Confidence              3799999999999875 599999999999999999998865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3e-34  Score=278.98  Aligned_cols=165  Identities=25%  Similarity=0.257  Sum_probs=139.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC------------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA------------   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~------------   60 (259)
                      +||+++|+||||||||||         +++|+|.+++.   ..++|++|++.+++.+|+.+++. +..            
T Consensus        32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  108 (556)
T PRK11819         32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI  108 (556)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence            799999999999999999         48999999753   46999999988888888876542 110            


Q ss_pred             ----CCC--------------------------HHHHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEe
Q 024989           61 ----GID--------------------------PQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD  109 (259)
Q Consensus        61 ----~~~--------------------------~~~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD  109 (259)
                          ...                          .+++.++++.+++. .++++.+|||||||||+||+||+.+|++||||
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD  188 (556)
T PRK11819        109 YAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD  188 (556)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence                000                          12355678888885 46789999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989          110 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE  174 (259)
Q Consensus       110 EPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~  174 (259)
                      |||++||+.++..+.++|+++    +.|||+|||+++++..+||+|++|++|+++ ..|+.+++.+
T Consensus       189 EPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        189 EPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             CCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence            999999999999999999875    249999999999999999999999999986 7788887654

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.2e-34  Score=286.23  Aligned_cols=171  Identities=19%  Similarity=0.225  Sum_probs=146.5

Q ss_pred             CCcEEEEEcCCCCCccccC---------C--ceEEEEcCeec----cccEEEecccCCCCccCcHHHHHh-c--c--C-C
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S--SGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIF-G--V--A-G   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~--~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~-~--~--~-~   61 (259)
                      +||+++|+||||||||||.         +  +|+|.++|++.    .+.++|++|+..+++.+|+.+++. .  .  . .
T Consensus        93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~  172 (659)
T PLN03211         93 PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS  172 (659)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCC
Confidence            6999999999999999992         2  89999999864    356999999998888999987652 1  1  1 1


Q ss_pred             CCH----HHHHHHHHHcCCCc-------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           62 IDP----QRRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~~-------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+.    ++++++++.+++..       ++.+++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus       173 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l  252 (659)
T PLN03211        173 LTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL  252 (659)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence            222    23567889999852       2356789999999999999999999999999999999999999999999998


Q ss_pred             HHhcCcEEEEEeCChh-HHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          131 CEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++ .|+|||++||+++ ++.++||++++|++|+++..|+.+++.+
T Consensus       253 ~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~  296 (659)
T PLN03211        253 AQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA  296 (659)
T ss_pred             Hh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence            76 5999999999998 5889999999999999999999988764

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-34  Score=273.19  Aligned_cols=167  Identities=17%  Similarity=0.256  Sum_probs=139.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc---cCCCCH----HH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGIDP----QR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~~~----~~   66 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.     ++++...+++.+|+.+++..   ..+.+.    +.
T Consensus        49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~  123 (549)
T PRK13545         49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI  123 (549)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence            799999999999999999         4899999999752     22223345566788765421   123332    23


Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +.++++.+++.  .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++ .|.|||++||+
T Consensus       124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHd  202 (549)
T PRK13545        124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHS  202 (549)
T ss_pred             HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence            45688888885  4678999999999999999999999999999999999999999999999999864 58999999999


Q ss_pred             hhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ++++..+||++++|++|+++..|+++++...
T Consensus       203 l~~i~~l~DrIivL~~GkIv~~G~~~el~~~  233 (549)
T PRK13545        203 LSQVKSFCTKALWLHYGQVKEYGDIKEVVDH  233 (549)
T ss_pred             HHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            9999999999999999999999999887654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=2.1e-34  Score=248.24  Aligned_cols=165  Identities=16%  Similarity=0.170  Sum_probs=133.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEE-EcCeeccccEEEecccCCCCccCcHHHHHh---ccCCCCHHHH-H
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-YLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDPQRR-A   68 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~~~~~-~   68 (259)
                      +||+++|+||||||||||         +++|+|. ++|..+     .+++.+.+++.+|+.+++.   ..++.+.++. .
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-----~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~   86 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-----PLGANSFILPGLTGEENARMMASLYGLDGDEFSH   86 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-----ccccccccCCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence            799999999999999999         4899997 666532     1334556778888887653   2234443333 3


Q ss_pred             HHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           69 ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        69 ~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      .+.+.+++.  .++++.+||+|||||++||+||+.+|+++||||||+++|+.++..+++.+.+..+  +.|+|++||+++
T Consensus        87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~  164 (213)
T PRK15177         87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPR  164 (213)
T ss_pred             HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHH
Confidence            344555664  4678899999999999999999999999999999999999999999998866543  468999999999


Q ss_pred             HHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          147 GLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       147 ~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++..+||++++|++|+++..++.++...
T Consensus       165 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~  192 (213)
T PRK15177        165 LIKEHCHAFGVLLHGKITMCEDLAQATA  192 (213)
T ss_pred             HHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence            9999999999999999999998887753

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.3e-34  Score=282.67  Aligned_cols=161  Identities=21%  Similarity=0.326  Sum_probs=139.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-CCCC-HHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGID-PQRRAELI   71 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~-~~~~~~~l   71 (259)
                      +||+++|+||||||||||         +++|+|.++     ..++|++|+..+++.+|+.+++... .... .....+++
T Consensus       364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L  438 (590)
T PRK13409        364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII  438 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence            799999999999999999         489999886     3699999998777888988765421 1112 23457889


Q ss_pred             HHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           72 KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        72 ~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      +.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||++++.
T Consensus       439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~  518 (590)
T PRK13409        439 KPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID  518 (590)
T ss_pred             HHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            999985  478899999999999999999999999999999999999999999999999998766899999999999999


Q ss_pred             ccCCeEEEEeCCeEEEecCh
Q 024989          150 NWPSHIVYVAHGKLQLAMPM  169 (259)
Q Consensus       150 ~~~drv~~l~~G~i~~~g~~  169 (259)
                      .+|||+++|+ |++...|..
T Consensus       519 ~~aDrvivl~-~~~~~~g~~  537 (590)
T PRK13409        519 YISDRLMVFE-GEPGKHGHA  537 (590)
T ss_pred             HhCCEEEEEc-Ccceeeeec
Confidence            9999999996 477777763

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=9.4e-35  Score=270.32  Aligned_cols=165  Identities=24%  Similarity=0.345  Sum_probs=147.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHH-hccC---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMI-FGVA---   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~-~~~~---   60 (259)
                      +||+.+|+|.||+|||||         ||+|+|.++|++.         +..||+|.|++.+++.+|+.|++ .+..   
T Consensus        29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~  108 (501)
T COG3845          29 KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK  108 (501)
T ss_pred             CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence            799999999999999999         6999999999864         34599999999999999997765 4432   


Q ss_pred             --CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           61 --GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        61 --~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                        ..+    .+++.++.+.+|++  ++.++.+||-|+||||.|.+||..+|++|||||||+-|-|...+++++.++.+.+
T Consensus       109 ~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~  188 (501)
T COG3845         109 GGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA  188 (501)
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence              122    24567888999985  6789999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                       .|+|||+|||.++|+.++|||+.||++|+++...+
T Consensus       189 -~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         189 -EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             -CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence             59999999999999999999999999999987766

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-35  Score=274.23  Aligned_cols=169  Identities=22%  Similarity=0.328  Sum_probs=145.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      .||-++|+|+||||||||         +++|+|.++|.++        ++.+++++|.+.+|... .++++ ......+.
T Consensus       363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~T-lr~NL~lA~~~AsD  441 (573)
T COG4987         363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT-LRDNLRLANPDASD  441 (573)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHH-HHHHHhhcCCCCCH
Confidence            699999999999999999         5899999999653        45689999998887654 55544 44445566


Q ss_pred             HHHHHHHHHcCCC---c----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---L----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---~----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ++..++++.+++.   .          +..-..||||||||++|||+|+++.+++||||||.|||+.+.+++++.|.+.+
T Consensus       442 Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~  521 (573)
T COG4987         442 EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA  521 (573)
T ss_pred             HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh
Confidence            7788888888873   1          12345799999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        +|+|+|++||++..++. ||||++|++|+++.+|+..++..+
T Consensus       522 --~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~  562 (573)
T COG4987         522 --EGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLAN  562 (573)
T ss_pred             --cCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhcc
Confidence              48999999999999987 899999999999999999998763

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-34  Score=293.31  Aligned_cols=170  Identities=23%  Similarity=0.324  Sum_probs=143.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHH-HHhccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEK-MIFGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~-~~~~~~~~~~   64 (259)
                      +|+.++|+|||||||||+         |++|+|.++|.++        +.+||.|.|+|.+|. .|+.+ ..++....+.
T Consensus       378 ~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~  456 (1228)
T KOG0055|consen  378 SGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATR  456 (1228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcccH
Confidence            699999999999999999         6999999999864        567999999986665 45555 5567655555


Q ss_pred             HHHHHHHHHcCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++.+..+.       +      ...+-.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+..
T Consensus       457 ~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~  536 (1228)
T KOG0055|consen  457 EEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS  536 (1228)
T ss_pred             HHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh
Confidence            555555544332       1      123345799999999999999999999999999999999999999999998753


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                        .|.|.|+++|+++.+.+ +|+|++|++|+|++.|+.+|+....
T Consensus       537 --~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~  578 (1228)
T KOG0055|consen  537 --KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALG  578 (1228)
T ss_pred             --cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhcc
Confidence              58999999999999998 9999999999999999999998754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=5.9e-35  Score=279.82  Aligned_cols=165  Identities=21%  Similarity=0.343  Sum_probs=135.3

Q ss_pred             CCcEEEEEcCCCCCcccc--------C--CceEEEEcCeec---------cccEEEecccCCCCc--cCcHHHHHh-cc-
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T--SSGDLSYLGGEW---------RREVAFAGFEVPIQM--DVSAEKMIF-GV-   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~--~~G~I~~~G~~~---------~~~i~~v~~~~~~~~--~lt~~~~~~-~~-   59 (259)
                      +||+++|+||||||||||        +  ++|+|.++|.+.         ++.++|++|++.++.  ..++.+++. .. 
T Consensus       285 ~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~  364 (490)
T PRK10938        285 PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF  364 (490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence            799999999999999999        2  489999998642         345899998765433  346666542 11 


Q ss_pred             -----CC-CCH---HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           60 -----AG-IDP---QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        60 -----~~-~~~---~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                           .. ...   +++.++++.+++..   ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L  444 (490)
T PRK10938        365 DSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFV  444 (490)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence                 11 122   34678899999853   5678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhc-cCCeEEEEeCCeEEEec
Q 024989          128 RKECEERGATIIYATHIFDGLEN-WPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~-~~drv~~l~~G~i~~~g  167 (259)
                      ++++++.+.|||++|||++++.. +||++++|++|+++...
T Consensus       445 ~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        445 DVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             HHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            99876534579999999999987 69999999999988754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=2e-34  Score=238.54  Aligned_cols=120  Identities=23%  Similarity=0.358  Sum_probs=107.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccc---------cEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR---------EVAFAGFEVPIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~---------~i~~v~~~~~~~~~lt~~~~~~~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++..         .++|++|                      
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------------------   82 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ----------------------   82 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------------------
Confidence            799999999999999999         489999999875321         1233222                      


Q ss_pred             HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                                          ||+||+||++|||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++||+
T Consensus        83 --------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~  141 (163)
T cd03216          83 --------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHR  141 (163)
T ss_pred             --------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence                                999999999999999999999999999999999999999999999865 48999999999


Q ss_pred             hhHHhccCCeEEEEeCCeEEE
Q 024989          145 FDGLENWPSHIVYVAHGKLQL  165 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i~~  165 (259)
                      ++++.++||++++|++|++++
T Consensus       142 ~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         142 LDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=7.5e-34  Score=254.68  Aligned_cols=163  Identities=21%  Similarity=0.245  Sum_probs=130.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+|+||||||||         +++|+|.++|     .++|++|++.+++. |+.+++.........+..++++.
T Consensus        62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----~i~yv~q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~  135 (282)
T cd03291          62 KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----RISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKA  135 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----EEEEEeCccccccc-CHHHHhhcccccCHHHHHHHHHH
Confidence            799999999999999999         4899999988     49999998877764 77665432111122223333443


Q ss_pred             cCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEE
Q 024989           74 LDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATII  139 (259)
Q Consensus        74 ~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l-~~~~~~~g~tii  139 (259)
                      +++.             .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.+ .++ . .+.|||
T Consensus       136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~-~~~tIi  213 (282)
T cd03291         136 CQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-M-ANKTRI  213 (282)
T ss_pred             hCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-h-CCCEEE
Confidence            3331             12345799999999999999999999999999999999999999998865 444 3 378999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++||+++++. .||++++|++|+++..|+++++..
T Consensus       214 iisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  247 (282)
T cd03291         214 LVTSKMEHLK-KADKILILHEGSSYFYGTFSELQS  247 (282)
T ss_pred             EEeCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999985 799999999999999999988764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=3e-34  Score=285.95  Aligned_cols=168  Identities=22%  Similarity=0.301  Sum_probs=141.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c-cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G-VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~-~~~~~   63 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+.+++. + ....+
T Consensus       499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~  577 (708)
T TIGR01193       499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVS  577 (708)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCCCC
Confidence            799999999999999999         5899999999864        5679999999988866 6666553 4 23455


Q ss_pred             HHHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+++.++++..++.         .+    ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++
T Consensus       578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~  657 (708)
T TIGR01193       578 QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL  657 (708)
T ss_pred             HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            66666666665541         12    234679999999999999999999999999999999999999999999864


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                         .|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus       658 ---~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~  698 (708)
T TIGR01193       658 ---QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR  698 (708)
T ss_pred             ---cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence               3789999999999875 5999999999999999999998653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=4.3e-34  Score=279.40  Aligned_cols=169  Identities=22%  Similarity=0.285  Sum_probs=140.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+++++ ++....+.
T Consensus       360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~d  438 (588)
T PRK13657        360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPDATD  438 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999754        4679999999988865 566655 34333455


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++.+++.         .+    .....||||||||++|||||+++|+++||||||++||+.+.+.+++.|.+..
T Consensus       439 ~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~  518 (588)
T PRK13657        439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM  518 (588)
T ss_pred             HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence            6666666655541         12    2235799999999999999999999999999999999999999999998763


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .++|+|++||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus       519 --~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~  559 (588)
T PRK13657        519 --KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR  559 (588)
T ss_pred             --cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence              4799999999998775 5999999999999999999988653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.5e-35  Score=239.58  Aligned_cols=161  Identities=22%  Similarity=0.363  Sum_probs=144.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhcc----CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGV----AG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~----~~   61 (259)
                      +||+.+|+||||||||||         +|+|++.+.|+++        +.+|+|+.|.+.+|++...+++++.+    ..
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr  107 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR  107 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccC
Confidence            799999999999999999         5999999999864        57799999999999886545555432    23


Q ss_pred             CCHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           62 IDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        62 ~~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                      .++..+..+++.++++   +++++.+||||++||++|+|-|..-|++|+|||||++||+.+++.+-++|.++.+++..++
T Consensus       108 ~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv  187 (223)
T COG4619         108 PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV  187 (223)
T ss_pred             CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEE
Confidence            4667778899999986   5788999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeE
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      +.+|||-+++.+.+|+++-+..|.+
T Consensus       188 ~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         188 LWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             EEEecChHHHhhhhheEEEeccCcc
Confidence            9999999999999999999999876

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=3.3e-34  Score=285.81  Aligned_cols=167  Identities=22%  Similarity=0.315  Sum_probs=138.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        +++++|++|++.+|.. |+++++ ++....+.
T Consensus       506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~~~~  584 (711)
T TIGR00958       506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPD  584 (711)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999864        4679999999888765 566655 45444455


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+ ..  .
T Consensus       585 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~  661 (711)
T TIGR00958       585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--S  661 (711)
T ss_pred             HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--c
Confidence            6666777666542         12    2345799999999999999999999999999999999999988888 22  2


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       ..++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       662 -~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~  703 (711)
T TIGR00958       662 -RASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED  703 (711)
T ss_pred             -cCCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhC
Confidence             258999999999998765 999999999999999999998753

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=3.2e-34  Score=243.89  Aligned_cols=153  Identities=23%  Similarity=0.300  Sum_probs=127.4

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhc---cCCC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFG---VAGI   62 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~   62 (259)
                      -+||+++|+||||||||||         +++|+|.++|.+.       ++.++|++|+..+++.+|+.+++..   ....
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~  103 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG  103 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCC
Confidence            3799999999999999999         4899999999763       3568999988777777888765421   2222


Q ss_pred             CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           63 DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                      ..+++.++++.+++.  .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||+
T Consensus       104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~  182 (198)
T TIGR01189       104 AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLL  182 (198)
T ss_pred             cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            234567889999985  4678899999999999999999999999999999999999999999999999865 5899999


Q ss_pred             EeCChhHHhccCCeEEE
Q 024989          141 ATHIFDGLENWPSHIVY  157 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~  157 (259)
                      +||+...+  .|++++.
T Consensus       183 ~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       183 TTHQDLGL--VEARELR  197 (198)
T ss_pred             EEcccccc--cceEEee
Confidence            99997544  4677654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=3.8e-34  Score=260.68  Aligned_cols=177  Identities=24%  Similarity=0.329  Sum_probs=148.9

Q ss_pred             CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeecc------------ccEEEecccCC--CCccCcHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEWR------------REVAFAGFEVP--IQMDVSAEK   54 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~~------------~~i~~v~~~~~--~~~~lt~~~   54 (259)
                      +||.++|+|.||||||..        +      -+|+|.++|.++-            .+|++++|++.  +.|-.|+..
T Consensus        35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~  114 (534)
T COG4172          35 AGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGK  114 (534)
T ss_pred             CCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHH
Confidence            699999999999999954        2      4899999998741            35999999874  455556543


Q ss_pred             HH----hccCCCC----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989           55 MI----FGVAGID----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  121 (259)
Q Consensus        55 ~~----~~~~~~~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~  121 (259)
                      -+    ..-.+.+    ++++.++++.+|+.     .+.++++|||||||||.||.||+++|++||.||||++||...+.
T Consensus       115 Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQa  194 (534)
T COG4172         115 QLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA  194 (534)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHH
Confidence            22    1112322    24456788888985     35679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989          122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS  179 (259)
Q Consensus       122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~  179 (259)
                      +++++|+++.++.|+++++||||+..+.+++|||.||.+|++++.|+.++++......
T Consensus       195 QIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHp  252 (534)
T COG4172         195 QILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHP  252 (534)
T ss_pred             HHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCCh
Confidence            9999999999999999999999999999999999999999999999999998765443

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=269.89  Aligned_cols=169  Identities=21%  Similarity=0.295  Sum_probs=149.9

Q ss_pred             CCcEEEEEcCCCCCccccC--------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||-|+|+|+|||||||+.        ++|+|.++|.++        |+.|||+||+..+|.+...++..+|....+.++
T Consensus       377 kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ee  456 (591)
T KOG0057|consen  377 KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEE  456 (591)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHH
Confidence            7999999999999999994        899999999875        567999999999998876667777776667788


Q ss_pred             HHHHHHHcCCC-----c--------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           67 RAELIKVLDID-----L--------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        67 ~~~~l~~~~l~-----~--------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      +.++.+.+++.     .        ..+-..|||||||||+||||++.+|+++++||||++||..+.+++++.+.+.  .
T Consensus       457 V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~  534 (591)
T KOG0057|consen  457 VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--M  534 (591)
T ss_pred             HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--c
Confidence            88888888873     1        1234579999999999999999999999999999999999999999999984  3


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .|+|+|+|-|+++.+.. ||+|+++++|++...|+.+++..
T Consensus       535 ~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  535 SGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             CCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence            58999999999999987 89999999999999999999876

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.3e-34  Score=244.30  Aligned_cols=152  Identities=17%  Similarity=0.281  Sum_probs=128.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-cc-CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|+..+++.+|+.+++. .. .....
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~  105 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGA  105 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcch
Confidence            799999999999999999         5899999999754       346899999887878888876543 21 11123


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      ..+.++++.+++.  .++++.+||+||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s  184 (200)
T PRK13540        106 VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTS  184 (200)
T ss_pred             HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence            4567889998885  3667899999999999999999999999999999999999999999999999754 589999999


Q ss_pred             CChhHHhccCCeEE
Q 024989          143 HIFDGLENWPSHIV  156 (259)
Q Consensus       143 H~~~~~~~~~drv~  156 (259)
                      |+.+.+.. ||..+
T Consensus       185 h~~~~~~~-~d~~~  197 (200)
T PRK13540        185 HQDLPLNK-ADYEE  197 (200)
T ss_pred             CCchhccc-cchhh
Confidence            99998876 88754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=7.9e-34  Score=275.27  Aligned_cols=169  Identities=22%  Similarity=0.279  Sum_probs=138.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++. |+.+++. .....+.
T Consensus       343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~  421 (544)
T TIGR01842       343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADP  421 (544)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCCCCH
Confidence            799999999999999999         5899999999764        4579999999888876 7777664 2222344


Q ss_pred             HHHHHHHHHcC-----------CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLD-----------ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~-----------l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ++..+.++..+           ++  ......+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++.
T Consensus       422 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~  501 (544)
T TIGR01842       422 EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK  501 (544)
T ss_pred             HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence            44443333332           21  234567899999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      . .|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus       502 ~-~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       502 A-RGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             h-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHhh
Confidence            3 5899999999998765 699999999999999999887743

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=3.4e-34  Score=238.68  Aligned_cols=128  Identities=28%  Similarity=0.424  Sum_probs=112.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.+.        ++.++|++|++.+++ .++.+++         
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------   96 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI---------   96 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh---------
Confidence            799999999999999999         4899999999754        245899988865554 3544322         


Q ss_pred             HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                                         ||+|||||++||+||+.+|++|||||||+|||+.++..++++|.++. + ++|||++||++
T Consensus        97 -------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~  155 (171)
T cd03228          97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRL  155 (171)
T ss_pred             -------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH
Confidence                               99999999999999999999999999999999999999999999874 3 69999999999


Q ss_pred             hHHhccCCeEEEEeCCe
Q 024989          146 DGLENWPSHIVYVAHGK  162 (259)
Q Consensus       146 ~~~~~~~drv~~l~~G~  162 (259)
                      +++.. ||++++|++|+
T Consensus       156 ~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         156 STIRD-ADRIIVLDDGR  171 (171)
T ss_pred             HHHHh-CCEEEEEcCCC
Confidence            99987 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=8.1e-34  Score=276.61  Aligned_cols=169  Identities=22%  Similarity=0.320  Sum_probs=141.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+++++. +....+.
T Consensus       340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~  418 (569)
T PRK10789        340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPDATQ  418 (569)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999864        4579999999888865 7776653 3333455


Q ss_pred             HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ++..++++..++.             ......+||||||||++|||||+++|++|||||||++||+.+.+.+++.|+++.
T Consensus       419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~  498 (569)
T PRK10789        419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG  498 (569)
T ss_pred             HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence            5566666555431             123456899999999999999999999999999999999999999999998864


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus       499 --~~~tii~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  539 (569)
T PRK10789        499 --EGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQ  539 (569)
T ss_pred             --CCCEEEEEecchhHHHc-CCEEEEEeCCEEEEecCHHHHHHc
Confidence              48999999999988765 999999999999999999988754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=9.3e-34  Score=275.33  Aligned_cols=166  Identities=25%  Similarity=0.250  Sum_probs=138.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC------------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA------------   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~------------   60 (259)
                      +||+++|+||||||||||         +++|+|.+++.   ..++|++|++.+++.+|+.+++. +..            
T Consensus        30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~  106 (552)
T TIGR03719        30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG---IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEI  106 (552)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence            799999999999999999         48999999763   46999999988888888876542 110            


Q ss_pred             ----CC-CH-------------------------HHHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEe
Q 024989           61 ----GI-DP-------------------------QRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD  109 (259)
Q Consensus        61 ----~~-~~-------------------------~~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD  109 (259)
                          .. ..                         .++.++++.+++. .++++.+|||||||||+||+||+.+|++||||
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD  186 (552)
T TIGR03719       107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD  186 (552)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence                00 00                         1234566777774 46788999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHHH
Q 024989          110 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKEA  175 (259)
Q Consensus       110 EPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~~  175 (259)
                      |||++||+.++..+.++|+++    +.|||+|||+++++..+||++++|++|+++ ..|+.+++.+.
T Consensus       187 EPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~~  249 (552)
T TIGR03719       187 EPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ  249 (552)
T ss_pred             CCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence            999999999999999999764    359999999999999999999999999976 67888876553

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.2e-33  Score=276.16  Aligned_cols=169  Identities=22%  Similarity=0.290  Sum_probs=139.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.+.        ++.++|++|++.++. .|+.+++. +....+.
T Consensus       360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~  438 (585)
T TIGR01192       360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREGATD  438 (585)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999754        457999999988776 46766553 3333344


Q ss_pred             HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ++..++++..++           +  ......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.
T Consensus       439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~  518 (585)
T TIGR01192       439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR  518 (585)
T ss_pred             HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence            444444433322           1  134567899999999999999999999999999999999999999999998763


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       519 --~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  559 (585)
T TIGR01192       519 --KNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQK  559 (585)
T ss_pred             --CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHC
Confidence              48999999999999865 999999999999999999988654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=5.8e-34  Score=252.02  Aligned_cols=161  Identities=19%  Similarity=0.274  Sum_probs=130.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEE-----------EcCeecc----------ccEEEecccCCCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-----------YLGGEWR----------REVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-----------~~G~~~~----------~~i~~v~~~~~~~~~lt~   52 (259)
                      +||+++|+||||||||||         +++|+|.           ++|.++.          ..++|++|...+++. ++
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~  103 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AV  103 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HH
Confidence            799999999999999999         5899996           7776531          135777777666654 33


Q ss_pred             HHHH-hccCCCC-HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           53 EKMI-FGVAGID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        53 ~~~~-~~~~~~~-~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      .+.+ ....... .+...++++.+++.  .++++.+||+|||||++||+||+.+|+++||||||++||+.++..+++.|+
T Consensus       104 ~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~  183 (255)
T cd03236         104 KGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR  183 (255)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            3322 2222111 24567889999985  367889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      ++.+ .|+|||++||+++++..+||++++|+ |++.+.
T Consensus       184 ~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~  219 (255)
T cd03236         184 ELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY  219 (255)
T ss_pred             HHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence            9865 58999999999999999999999995 556543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=7.9e-34  Score=276.18  Aligned_cols=169  Identities=25%  Similarity=0.302  Sum_probs=141.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC-CCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA-GID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-~~~   63 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+.+++. +.. ..+
T Consensus       357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~  435 (571)
T TIGR02203       357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTEQAD  435 (571)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCCCCC
Confidence            799999999999999999         5899999999763        4579999999888765 6666654 332 355


Q ss_pred             HHHHHHHHHHcCCC---------cccc----CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID---------LSWR----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~---------~~~~----~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .++..++++.+++.         .+..    -..||||||||++||||++.+|+++||||||++||+.+.+.+++.|.++
T Consensus       436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~  515 (571)
T TIGR02203       436 RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL  515 (571)
T ss_pred             HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            66777777776652         1222    3479999999999999999999999999999999999999999999886


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .  .++|+|++||+.+.+. .||+|++|++|++++.|+.+++.+.
T Consensus       516 ~--~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~~  557 (571)
T TIGR02203       516 M--QGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLAR  557 (571)
T ss_pred             h--CCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHHc
Confidence            4  4799999999998765 5999999999999999999998653

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-34  Score=279.52  Aligned_cols=165  Identities=19%  Similarity=0.266  Sum_probs=137.4

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccC--CCCccCcHHHHHhccC-CCCHHHHHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVA-GIDPQRRAE   69 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~--~~~~~lt~~~~~~~~~-~~~~~~~~~   69 (259)
                      -+||+++|+||||||||||         +++|+|.+.+.   ..++|++|+.  .+.+..++.+.+.... ......+.+
T Consensus       336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  412 (638)
T PRK10636        336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG---IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD  412 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHH
Confidence            3799999999999999999         48999998743   3689999864  2334445554433222 122345678


Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +++.|++.   .++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.++|.++   .| |||+||||++
T Consensus       413 ~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~  488 (638)
T PRK10636        413 YLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH  488 (638)
T ss_pred             HHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH
Confidence            99999984   36789999999999999999999999999999999999999999999999875   24 9999999999


Q ss_pred             HHhccCCeEEEEeCCeEE-EecChhHHH
Q 024989          147 GLENWPSHIVYVAHGKLQ-LAMPMDKVK  173 (259)
Q Consensus       147 ~~~~~~drv~~l~~G~i~-~~g~~~~~~  173 (259)
                      ++..+||++++|++|+++ ..|+.+++.
T Consensus       489 ~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        489 LLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             HHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            999999999999999997 789988874

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.1e-33  Score=281.27  Aligned_cols=169  Identities=22%  Similarity=0.298  Sum_probs=141.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|++|++.++.. |+.+++. +....+.
T Consensus       482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~~~~  560 (694)
T TIGR01846       482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNPGAPF  560 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCCCCCH
Confidence            699999999999999999         5899999999864        4679999999887765 6666553 3333455


Q ss_pred             HHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .    .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.
T Consensus       561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~  640 (694)
T TIGR01846       561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC  640 (694)
T ss_pred             HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence            5555556555431         1    23456899999999999999999999999999999999999999999999873


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       641 --~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~  681 (694)
T TIGR01846       641 --RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL  681 (694)
T ss_pred             --CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence              48999999999998876 999999999999999999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2.6e-33  Score=272.20  Aligned_cols=165  Identities=21%  Similarity=0.228  Sum_probs=136.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCC-CCccCcHHHHHh-cc--CCCC--HHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMIF-GV--AGID--PQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~~~--~~~~   67 (259)
                      +||+++|+||||||||||         +++|+|.+++ +  ..++|++|++. +++.+|+.+++. ..  .+..  ....
T Consensus       347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~--~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  423 (552)
T TIGR03719       347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T--VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPS  423 (552)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHH
Confidence            699999999999999999         4899999843 3  25999999863 677788877553 22  1221  2335


Q ss_pred             HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .++++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|.++   .| |||+||||
T Consensus       424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-~viivsHd  499 (552)
T TIGR03719       424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF---AG-CAVVISHD  499 (552)
T ss_pred             HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CC-eEEEEeCC
Confidence            5789999984   36789999999999999999999999999999999999999999999999875   24 89999999


Q ss_pred             hhHHhccCCeEEEEeC-CeEE-EecChhHHHH
Q 024989          145 FDGLENWPSHIVYVAH-GKLQ-LAMPMDKVKE  174 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~-G~i~-~~g~~~~~~~  174 (259)
                      ++++..+||++++|++ |+++ ..|+.+++.+
T Consensus       500 ~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       500 RWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             HHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            9999999999999986 5776 5677766544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.7e-33  Score=236.03  Aligned_cols=134  Identities=22%  Similarity=0.278  Sum_probs=114.1

Q ss_pred             CCcEEEEEcCCCCCccccC-----CceEEEEcCeec---cccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHc
Q 024989            3 EPEMVKVLGRSAFHDTALT-----SSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL   74 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~   74 (259)
                      +||+++|+||||||||||+     ++|++.++|...   +..++|++|                         .++++.+
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q-------------------------~~~l~~~   74 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-------------------------LQFLIDV   74 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH-------------------------HHHHHHc
Confidence            7999999999999999994     789998887531   123555433                         3467777


Q ss_pred             CCC---ccccCCcCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           75 DID---LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        75 ~l~---~~~~~~~LSgG~~qrv~ia~al~~~--p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      ++.   .++++.+||+|||||++||+||+.+  |+++||||||++||+.+++.+.+.|+++++ .|.|||++||+++++.
T Consensus        75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~  153 (176)
T cd03238          75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS  153 (176)
T ss_pred             CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence            774   4678899999999999999999999  999999999999999999999999999864 6999999999999874


Q ss_pred             ccCCeEEEEeCCeE
Q 024989          150 NWPSHIVYVAHGKL  163 (259)
Q Consensus       150 ~~~drv~~l~~G~i  163 (259)
                       .||++++|.+|+.
T Consensus       154 -~~d~i~~l~~g~~  166 (176)
T cd03238         154 -SADWIIDFGPGSG  166 (176)
T ss_pred             -hCCEEEEECCCCC
Confidence             7999999977654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.1e-33  Score=271.02  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=138.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccC-CCCccCcHHHHHh-cc--CCC--CHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIF-GV--AGI--DPQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~-~~~~~lt~~~~~~-~~--~~~--~~~~~   67 (259)
                      +||+++|+||||||||||         +++|+|.+++ +  ..++|++|+. .+++.+|+.+++. ..  .+.  .....
T Consensus       349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~--~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  425 (556)
T PRK11819        349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T--VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPS  425 (556)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHH
Confidence            799999999999999999         4899999843 2  2599999986 5677888887653 21  111  12334


Q ss_pred             HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ..+++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|.++   .| |||++|||
T Consensus       426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi~vtHd  501 (556)
T PRK11819        426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF---PG-CAVVISHD  501 (556)
T ss_pred             HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC-eEEEEECC
Confidence            5789999984   36789999999999999999999999999999999999999999999999875   24 89999999


Q ss_pred             hhHHhccCCeEEEEeC-CeEE-EecChhHHHHH
Q 024989          145 FDGLENWPSHIVYVAH-GKLQ-LAMPMDKVKEA  175 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~-G~i~-~~g~~~~~~~~  175 (259)
                      ++++..+||++++|++ |++. ..|+.+++.+.
T Consensus       502 ~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~  534 (556)
T PRK11819        502 RWFLDRIATHILAFEGDSQVEWFEGNFQEYEED  534 (556)
T ss_pred             HHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence            9999999999999986 7876 57888877654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=2.1e-33  Score=273.50  Aligned_cols=168  Identities=22%  Similarity=0.266  Sum_probs=139.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|+||++.+|.. |+++++ ++....+.
T Consensus       365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~~~~  443 (576)
T TIGR02204       365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRPDATD  443 (576)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCCCCCH
Confidence            799999999999999999         4899999999753        4579999999887765 556555 33333455


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    .....||||||||++||||++.+|++|||||||++||+.+.+.+++.|+++.
T Consensus       444 ~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~  523 (576)
T TIGR02204       444 EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM  523 (576)
T ss_pred             HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence            5666666665542         11    2345799999999999999999999999999999999999999999999874


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                        .++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus       524 --~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~  563 (576)
T TIGR02204       524 --KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIA  563 (576)
T ss_pred             --CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHH
Confidence              4799999999998876 599999999999999999988765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.9e-33  Score=233.40  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=112.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|.   +.++|++|++.++ ..|+.+++...              
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~~~~-~~tv~~nl~~~--------------   87 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPYLP-LGTLREQLIYP--------------   87 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCCccc-cccHHHHhhcc--------------
Confidence            799999999999999999         48999999874   5799999987654 45666554210              


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                             ++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++    +.|+|++||+++.. .+||
T Consensus        88 -------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d  155 (166)
T cd03223          88 -------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHD  155 (166)
T ss_pred             -------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCC
Confidence                   46899999999999999999999999999999999999999999999864    58999999999865 5899


Q ss_pred             eEEEEeCCe
Q 024989          154 HIVYVAHGK  162 (259)
Q Consensus       154 rv~~l~~G~  162 (259)
                      ++++|+++.
T Consensus       156 ~i~~l~~~~  164 (166)
T cd03223         156 RVLDLDGEG  164 (166)
T ss_pred             EEEEEcCCC
Confidence            999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.5e-33  Score=239.37  Aligned_cols=150  Identities=15%  Similarity=0.255  Sum_probs=126.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc----ccEEEecccCCCCccCcHHHHHhc---cCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR----REVAFAGFEVPIQMDVSAEKMIFG---VAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~----~~i~~v~~~~~~~~~lt~~~~~~~---~~~~~~~~   66 (259)
                      +||+++|+|+||||||||         +++|+|.++|.++.    +.++|++|+..+++.+|+.+++..   .++ ..+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~  103 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-SAET  103 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc-cHHH
Confidence            799999999999999999         48999999997652    348899888777777888765532   111 2345


Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +.++++.+++.  .++++.+||||||||++||+|++.+|+++||||||+|||+.++..++++|++.. +.|.|||++||+
T Consensus       104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~  182 (195)
T PRK13541        104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHL  182 (195)
T ss_pred             HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence            67788888885  467889999999999999999999999999999999999999999999998754 468999999999


Q ss_pred             hhHHhccCCeE
Q 024989          145 FDGLENWPSHI  155 (259)
Q Consensus       145 ~~~~~~~~drv  155 (259)
                      ++++.. +|.+
T Consensus       183 ~~~i~~-~~~~  192 (195)
T PRK13541        183 ESSIKS-AQIL  192 (195)
T ss_pred             ccccch-hhee
Confidence            998877 6654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=2.4e-33  Score=275.68  Aligned_cols=171  Identities=22%  Similarity=0.307  Sum_probs=146.3

Q ss_pred             CCcEEEEEcCCCCCccccC------------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh-c--cC--
Q 024989            3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF-G--VA--   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~-~--~~--   60 (259)
                      +||+++|+||||||||||.            .+|+|.++|.+.     ++.++|++|++.+++.+|+++++. .  +.  
T Consensus        50 ~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~  129 (617)
T TIGR00955        50 PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMP  129 (617)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCC
Confidence            6999999999999999982            279999999864     456899999999999999987653 1  11  


Q ss_pred             -CCCH----HHHHHHHHHcCCC--ccccCC------cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           61 -GIDP----QRRAELIKVLDID--LSWRMH------KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        61 -~~~~----~~~~~~l~~~~l~--~~~~~~------~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                       ....    ++++++++.+++.  .+.+++      .|||||||||+||++|+.+|++++|||||+|||+.++..+++.|
T Consensus       130 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L  209 (617)
T TIGR00955       130 RRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL  209 (617)
T ss_pred             CCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHH
Confidence             1121    3467889999885  355554      59999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChh-HHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          128 RKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++++ .|+|||+++|++. ++.++||++++|++|+++..|+++++..
T Consensus       210 ~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~  256 (617)
T TIGR00955       210 KGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP  256 (617)
T ss_pred             HHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence            99875 5999999999995 7889999999999999999999988754

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=3.5e-33  Score=234.37  Aligned_cols=127  Identities=20%  Similarity=0.232  Sum_probs=111.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|..    ++|++|...                            
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~q~~~----------------------------   71 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----PVYKPQYID----------------------------   71 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE----EEEEcccCC----------------------------
Confidence            799999999999999999         489999999863    777765421                            


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                                 ||||||||++|||||+.+|+++||||||++||+.++..+.++|.+++++.+.|||++||+++++..+||
T Consensus        72 -----------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d  140 (177)
T cd03222          72 -----------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD  140 (177)
T ss_pred             -----------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC
Confidence                       999999999999999999999999999999999999999999999865434899999999999999999


Q ss_pred             eEEEEeCCeEEEe--cChhHH
Q 024989          154 HIVYVAHGKLQLA--MPMDKV  172 (259)
Q Consensus       154 rv~~l~~G~i~~~--g~~~~~  172 (259)
                      ++++|+++-.+..  +.+...
T Consensus       141 ~i~~l~~~~~~~~~~~~~~~~  161 (177)
T cd03222         141 RIHVFEGEPGVYGIASQPKGT  161 (177)
T ss_pred             EEEEEcCCCccceeccCCcch
Confidence            9999998766533  555433

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=8.1e-33  Score=293.41  Aligned_cols=169  Identities=20%  Similarity=0.229  Sum_probs=145.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        +++++++||++.+|.. |+++++......+.+
T Consensus      1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sde 1339 (1495)
T PLN03232       1261 PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDA 1339 (1495)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHH
Confidence            799999999999999999         5899999999864        5679999999998876 788776433334556


Q ss_pred             HHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++..++.         .+    ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. 
T Consensus      1340 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~- 1418 (1495)
T PLN03232       1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF- 1418 (1495)
T ss_pred             HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-
Confidence            677777766552         12    2335799999999999999999999999999999999999999999998764 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .++|+|+|+|.++.+.. ||+|++|++|++++.|+++++.+.
T Consensus      1419 -~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232       1419 -KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred             -CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence             47999999999999987 899999999999999999999764

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.4e-32  Score=292.58  Aligned_cols=169  Identities=18%  Similarity=0.227  Sum_probs=145.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        |++++++||++.+|.. |+++++......+.+
T Consensus      1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tde 1342 (1622)
T PLN03130       1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDA 1342 (1622)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHH
Confidence            799999999999999999         5899999999864        5779999999998876 777776433334556


Q ss_pred             HHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++..++.         .+.    ...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. 
T Consensus      1343 ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~- 1421 (1622)
T PLN03130       1343 DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 1421 (1622)
T ss_pred             HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-
Confidence            667777766552         122    335899999999999999999999999999999999999999999999864 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .++|+|+|+|.++.+.. ||||++|++|++++.|+++++.+.
T Consensus      1422 -~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130       1422 -KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred             -CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence             48999999999999987 899999999999999999999764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.1e-32  Score=271.68  Aligned_cols=165  Identities=21%  Similarity=0.274  Sum_probs=137.8

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccC-CCCccCcHHHHHh-ccCCC--C--HHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIF-GVAGI--D--PQR   66 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~-~~~~~lt~~~~~~-~~~~~--~--~~~   66 (259)
                      -+||+++|+||||||||||         +++|+|.+ |...  .++|++|+. .+++.+|+.+++. .....  .  ...
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~--~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~  419 (635)
T PRK11147        343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL--EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH  419 (635)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc--EEEEEeCcccccCCCCCHHHHHHhhcccccccchHHH
Confidence            3799999999999999999         48999988 5432  599999875 4677888877653 22111  1  344


Q ss_pred             HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           67 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        67 ~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      +.++++.|++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|+++    +.|||+|||
T Consensus       420 ~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSH  495 (635)
T PRK11147        420 VLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSH  495 (635)
T ss_pred             HHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEEC
Confidence            66788888884   36789999999999999999999999999999999999999999999988764    459999999


Q ss_pred             ChhHHhccCCeEEEEe-CCeEEE-ecChhHHH
Q 024989          144 IFDGLENWPSHIVYVA-HGKLQL-AMPMDKVK  173 (259)
Q Consensus       144 ~~~~~~~~~drv~~l~-~G~i~~-~g~~~~~~  173 (259)
                      |++++..+||++++|+ +|++.. .|+.++..
T Consensus       496 d~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~  527 (635)
T PRK11147        496 DRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR  527 (635)
T ss_pred             CHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence            9999999999999998 899876 67777764

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.6e-32  Score=272.87  Aligned_cols=164  Identities=20%  Similarity=0.225  Sum_probs=133.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH--hc-cCCCCHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI--FG-VAGIDPQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~--~~-~~~~~~~~~~~~   70 (259)
                      +||+++|+||||||||||         +++|+|.+.+.   ..++|++|+.......+.....  .. ..+...+++.++
T Consensus       534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  610 (718)
T PLN03073        534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---VRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  610 (718)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---eeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHH
Confidence            799999999999999999         48999998763   4699999875322222222111  11 223345667889


Q ss_pred             HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      ++.+++.   .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|.++   .| |||++|||+++
T Consensus       611 L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~  686 (718)
T PLN03073        611 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHL  686 (718)
T ss_pred             HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHH
Confidence            9999985   36789999999999999999999999999999999999999999998888653   24 99999999999


Q ss_pred             HhccCCeEEEEeCCeEE-EecChhHHH
Q 024989          148 LENWPSHIVYVAHGKLQ-LAMPMDKVK  173 (259)
Q Consensus       148 ~~~~~drv~~l~~G~i~-~~g~~~~~~  173 (259)
                      +..+||++++|++|+++ ..|+.++..
T Consensus       687 i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        687 ISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             HHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            99999999999999998 678776653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1e-32  Score=272.47  Aligned_cols=169  Identities=24%  Similarity=0.349  Sum_probs=145.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|+++            ++.++|++|++.+++.+++.+++. .  
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  112 (648)
T PRK10535         33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV  112 (648)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHH
Confidence            799999999999999999         4899999999863            245899999998888888766442 1  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+||+||+||++|||||+.+|++|||||||+|||+.+++.+.++|+++++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~  192 (648)
T PRK10535        113 YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD  192 (648)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            11222    23456788889885  4678899999999999999999999999999999999999999999999999865


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                       .|.|+|++||+++.+. .|||+++|++|++++.|+.++..
T Consensus       193 -~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        193 -RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             -cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence             5999999999999886 69999999999999999998764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1e-32  Score=291.26  Aligned_cols=170  Identities=21%  Similarity=0.259  Sum_probs=142.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------C----------------------------------------------------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------T----------------------------------------------------   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~----------------------------------------------------   21 (259)
                      +|+.++|+||||||||||         +                                                    
T Consensus      1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265       1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999         4                                                    


Q ss_pred             --CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHHHcCCC---------ccc-
Q 024989           22 --SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID---------LSW-   80 (259)
Q Consensus        22 --~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~~~~l~---------~~~-   80 (259)
                        ++|+|.++|.++        ++.++||+|++.+|. .|+++++ ++....+.+++.++++..++.         .+. 
T Consensus      1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265       1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred             CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence              499999999864        567999999998885 4666655 554445666677777766541         122 


Q ss_pred             ---cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           81 ---RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        81 ---~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                         +-.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++....|+|+|+|||.++.+.. ||+|++
T Consensus      1352 VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivv 1430 (1466)
T PTZ00265       1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVV 1430 (1466)
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEE
Confidence               3457999999999999999999999999999999999999999999988742248999999999998876 999999


Q ss_pred             EeC----CeEE-EecChhHHHH
Q 024989          158 VAH----GKLQ-LAMPMDKVKE  174 (259)
Q Consensus       158 l~~----G~i~-~~g~~~~~~~  174 (259)
                      |++    |+++ +.|+.+++.+
T Consensus      1431 l~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1431 FNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             EeCCCCCCCEEEEecCHHHHHh
Confidence            999    9965 7999999875

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.4e-33  Score=279.31  Aligned_cols=170  Identities=22%  Similarity=0.310  Sum_probs=145.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +|+.++|+|||||||||.         +++|.|.++|.++        |++++.|+|+|.+|...-.++..+|....+.+
T Consensus      1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHH
Confidence            799999999999999999         6899999999874        57899999999998765444556774445666


Q ss_pred             HHHHHHHHcCC-------C--cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDI-------D--LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l-------~--~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++..+.       +  .+    .+-.+||||||||++||||+++||++|||||.||+||.++.+.+-+.|.+.. 
T Consensus      1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~- 1173 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM- 1173 (1228)
T ss_pred             HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-
Confidence            66666655432       2  13    3456899999999999999999999999999999999999999999998764 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .|+|.|+|.|.+..+.+ ||.|+|+++|+|++.|+-+++.+.
T Consensus      1174 -~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1174 -EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred             -cCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhC
Confidence             58999999999999887 999999999999999999999874

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1.2e-32  Score=267.19  Aligned_cols=160  Identities=20%  Similarity=0.244  Sum_probs=131.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.... .++  + ...+.+
T Consensus       348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti-~~n--~-~~~~~~  423 (547)
T PRK10522        348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL-GPE--G-KPANPA  423 (547)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh-ccc--c-CchHHH
Confidence            799999999999999999         5899999999864        457999999987776532 222  1 122345


Q ss_pred             HHHHHHHHcCCCcc-----c--cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           66 RRAELIKVLDIDLS-----W--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        66 ~~~~~l~~~~l~~~-----~--~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                      .+.++++.+++...     .  ...+||||||||++||||++++|++|||||||++||+.+.+.+++.+.+..+..|+|+
T Consensus       424 ~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tv  503 (547)
T PRK10522        424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI  503 (547)
T ss_pred             HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence            56778888877421     1  1358999999999999999999999999999999999999999999876654458999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g  167 (259)
                      |++||+++.+. .||+|++|++|++++..
T Consensus       504 i~itH~~~~~~-~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        504 FAISHDDHYFI-HADRLLEMRNGQLSELT  531 (547)
T ss_pred             EEEEechHHHH-hCCEEEEEECCEEEEec
Confidence            99999997665 69999999999998763

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=2.3e-32  Score=290.33  Aligned_cols=169  Identities=17%  Similarity=0.222  Sum_probs=145.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        |++++++||++.+|.. |+++++......+.+
T Consensus      1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sde 1389 (1522)
T TIGR00957      1311 GGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDE 1389 (1522)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHH
Confidence            799999999999999999         4899999999864        5679999999999876 788777533334566


Q ss_pred             HHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++..++.         .+.    ...+||||||||++|||||+++|++|||||||++||+.+...+.+.|++.. 
T Consensus      1390 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~- 1468 (1522)
T TIGR00957      1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF- 1468 (1522)
T ss_pred             HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-
Confidence            677777776652         122    235799999999999999999999999999999999999999999998764 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .++|||+|+|+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus      1469 -~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957      1469 -EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred             -CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence             47999999999999887 899999999999999999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.7e-32  Score=266.73  Aligned_cols=160  Identities=19%  Similarity=0.221  Sum_probs=129.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.....++ .  ....+.+
T Consensus       367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~  443 (555)
T TIGR01194       367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD-E--GEHASLD  443 (555)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc-c--ccchhHH
Confidence            799999999999999999         5899999999864        356899999988776644333 2  1122345


Q ss_pred             HHHHHHHHcCCCc--c------ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           66 RRAELIKVLDIDL--S------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        66 ~~~~~l~~~~l~~--~------~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      ++.++++.+++..  .      ....+||||||||++||||++.+|++|||||||++||+.+.+.+.+.+.+..+..|+|
T Consensus       444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t  523 (555)
T TIGR01194       444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKT  523 (555)
T ss_pred             HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            6677888888742  1      1236799999999999999999999999999999999999999988664322335899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      +|++||+++.+. .||+|++|++|++++.
T Consensus       524 iiiisH~~~~~~-~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       524 IIIISHDDQYFE-LADQIIKLAAGCIVKD  551 (555)
T ss_pred             EEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence            999999998765 6999999999999865

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=6.1e-32  Score=266.51  Aligned_cols=165  Identities=24%  Similarity=0.256  Sum_probs=130.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHH------------------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM------------------   55 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~------------------   55 (259)
                      +||+++|+||||||||||         +++|+|.++|..   .++|++|.+......++.++                  
T Consensus        28 ~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  104 (635)
T PRK11147         28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDI  104 (635)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC---EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHH
Confidence            699999999999999999         489999998732   25666554321111111110                  


Q ss_pred             ------------Hh-------cc---CCCC-HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 024989           56 ------------IF-------GV---AGID-PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT  112 (259)
Q Consensus        56 ------------~~-------~~---~~~~-~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt  112 (259)
                                  +.       .+   .+.. ..++.++++.+++..++++.+|||||||||+||+||+.+|++|||||||
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt  184 (635)
T PRK11147        105 SHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPT  184 (635)
T ss_pred             HHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                        00       00   0111 2456778999998767889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEE-ecChhHHHH
Q 024989          113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDKVKE  174 (259)
Q Consensus       113 ~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~  174 (259)
                      ++||+.++..+.++|+++    +.|||+||||++++..+||+|++|++|+++. .|+.+++..
T Consensus       185 ~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~  243 (635)
T PRK11147        185 NHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL  243 (635)
T ss_pred             CccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence            999999999999999875    2599999999999999999999999999974 688877654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.2e-32  Score=266.02  Aligned_cols=164  Identities=23%  Similarity=0.305  Sum_probs=131.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh----------------
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF----------------   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~----------------   57 (259)
                      +||.++|+||||||||||         +++|+|.+.|..   .++|++|..+.+. .+...++.                
T Consensus        26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~  101 (638)
T PRK10636         26 PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDA  101 (638)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC---EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHH
Confidence            799999999999999999         589999998853   4788877543221 12111100                


Q ss_pred             -------------c----cCCCC-HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Q 024989           58 -------------G----VAGID-PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD  116 (259)
Q Consensus        58 -------------~----~~~~~-~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD  116 (259)
                                   .    ..+.. ..++.++++.+|+.   .++++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD  181 (638)
T PRK10636        102 NERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD  181 (638)
T ss_pred             hccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCC
Confidence                         0    00111 23567789999984   367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989          117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE  174 (259)
Q Consensus       117 ~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~  174 (259)
                      +.++.++.++|+++    +.|||+||||++++..+||++++|++|++. ..|+.+....
T Consensus       182 ~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~  236 (638)
T PRK10636        182 LDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV  236 (638)
T ss_pred             HHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence            99999999988753    569999999999999999999999999996 4687776654

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.9e-32  Score=287.80  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=145.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||.++|+|+||||||||         +++|+|.++|.++        ++.++|+||++.+|.. |+++++......+.+
T Consensus      1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sde 1413 (1560)
T PTZ00243       1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSA 1413 (1560)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcccCCCHH
Confidence            799999999999999999         4899999999864        5679999999998876 788877543334567


Q ss_pred             HHHHHHHHcCCC---------cccc----CCcCCHHHHHHHHHHHHHccC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LSWR----MHKVSDGQRRRVQICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~~~----~~~LSgG~~qrv~ia~al~~~-p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ++.++++..++.         .+..    -.+||||||||++|||||+++ |++|||||||++||+.+.+.+.+.|++..
T Consensus      1414 eI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243       1414 EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred             HHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence            777888877662         1222    357999999999999999996 89999999999999999999999998764


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .++|||+|+|.++.+.. ||+|++|++|++++.|+++++.+.
T Consensus      1494 --~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243       1494 --SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred             --CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence              47999999999998876 899999999999999999999753

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=2.4e-32  Score=221.93  Aligned_cols=111  Identities=23%  Similarity=0.320  Sum_probs=103.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|.   ..++|++|                               
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i~~~~~-------------------------------   70 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKIGYFEQ-------------------------------   70 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEEEEEcc-------------------------------
Confidence            799999999999999999         48999999985   46788766                               


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                                 ||+||+||++|||||+.+|+++||||||+|||+.++..+.+.|+++    +.|||++||+++++..+||
T Consensus        71 -----------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d  135 (144)
T cd03221          71 -----------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVAT  135 (144)
T ss_pred             -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCC
Confidence                       9999999999999999999999999999999999999999999864    4699999999999999999


Q ss_pred             eEEEEeCCe
Q 024989          154 HIVYVAHGK  162 (259)
Q Consensus       154 rv~~l~~G~  162 (259)
                      ++++|++|+
T Consensus       136 ~v~~l~~g~  144 (144)
T cd03221         136 KIIELEDGK  144 (144)
T ss_pred             EEEEEeCCC
Confidence            999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=237.71  Aligned_cols=166  Identities=23%  Similarity=0.385  Sum_probs=137.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee---------ccccEEEecccC--CCCccCcHHHHHh-----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE---------WRREVAFAGFEV--PIQMDVSAEKMIF-----   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~---------~~~~i~~v~~~~--~~~~~lt~~~~~~-----   57 (259)
                      +||-++|+||||||||||         +++|.+.+.|+.         ++++||++....  .+....++.+.+.     
T Consensus        56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~  135 (257)
T COG1119          56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA  135 (257)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence            699999999999999999         479999999974         367899986432  2233445555431     


Q ss_pred             --ccC--CCCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           58 --GVA--GIDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        58 --~~~--~~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                        +++  ..+.   +++..+++.+++.  .+++..+||-||||||.|||||+.+|++|||||||+|||..++..+.+.|.
T Consensus       136 siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~  215 (257)
T COG1119         136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE  215 (257)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence              223  2232   3456789999986  478899999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          129 KECEE-RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       129 ~~~~~-~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      +++.. .+.++|+|||+.+++....++++.|++|+++..|.
T Consensus       216 ~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         216 ELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             HHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            98753 27899999999999999999999999999998763

>PRK13409 putative ATPase RIL; Provisional

Probab=99.98  E-value=2.6e-32  Score=266.61  Aligned_cols=155  Identities=21%  Similarity=0.321  Sum_probs=128.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEE-----------EcCeecc----------ccEEEecccCCCCcc---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-----------YLGGEWR----------REVAFAGFEVPIQMD---   49 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-----------~~G~~~~----------~~i~~v~~~~~~~~~---   49 (259)
                      +||+++|+||||||||||         +++|+|.           ++|.++.          ..+++.+|....++.   
T Consensus        98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~  177 (590)
T PRK13409         98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK  177 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence            799999999999999999         5899997           8887541          235666665444332   


Q ss_pred             CcHHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           50 VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        50 lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                      .|+.+++...  ...+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|
T Consensus       178 ~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i  255 (590)
T PRK13409        178 GKVRELLKKV--DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI  255 (590)
T ss_pred             chHHHHHHhh--hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            2666655321  1234577899999986  47889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      ++++ + |.|||++||+++++..+||++++|+++
T Consensus       256 ~~l~-~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        256 RELA-E-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            9986 4 899999999999999999999999863

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.98  E-value=4.7e-32  Score=286.32  Aligned_cols=157  Identities=18%  Similarity=0.280  Sum_probs=128.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEc-Ceec--------cccEEEecccCCCCccCcHHHHH-hccC---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYL-GGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA---   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~-G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~---   60 (259)
                      +||+++|+||||||||||         +++|+|.++ |.++        ++.++|++|++.+|.. |+.+++ ++..   
T Consensus       410 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~  488 (1466)
T PTZ00265        410 EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLK  488 (1466)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCcc
Confidence            799999999999999999         589999995 5542        4679999999988864 777654 3321   


Q ss_pred             ------------------------------------------------------CCCHHHHHHHHHHcCCC---------
Q 024989           61 ------------------------------------------------------GIDPQRRAELIKVLDID---------   77 (259)
Q Consensus        61 ------------------------------------------------------~~~~~~~~~~l~~~~l~---------   77 (259)
                                                                            ..+.+++.++++.+++.         
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g  568 (1466)
T PTZ00265        489 DLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDK  568 (1466)
T ss_pred             ccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccc
Confidence                                                                  01223455566665542         


Q ss_pred             ----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           78 ----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        78 ----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                          ...+..+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++.++.|+|+|+|||+++.+. .||
T Consensus       569 ~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD  647 (1466)
T PTZ00265        569 YETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-YAN  647 (1466)
T ss_pred             cCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-hCC
Confidence                124567899999999999999999999999999999999999999999999886545899999999999884 799


Q ss_pred             eEEEEeCC
Q 024989          154 HIVYVAHG  161 (259)
Q Consensus       154 rv~~l~~G  161 (259)
                      +|++|++|
T Consensus       648 ~Iivl~~g  655 (1466)
T PTZ00265        648 TIFVLSNR  655 (1466)
T ss_pred             EEEEEeCC
Confidence            99999986

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=3.6e-32  Score=227.29  Aligned_cols=172  Identities=17%  Similarity=0.236  Sum_probs=148.3

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcC-eec---------cccEEEecccCCCCccCcHHHHHh---c-
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLG-GEW---------RREVAFAGFEVPIQMDVSAEKMIF---G-   58 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G-~~~---------~~~i~~v~~~~~~~~~lt~~~~~~---~-   58 (259)
                      -+||.-+|+||||+||||+         ++.|++.+.| .++         +..||--+|.|..|..+|+.+++.   . 
T Consensus        29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~  108 (249)
T COG4674          29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNR  108 (249)
T ss_pred             cCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcC
Confidence            4799999999999999999         4789999999 443         234777889999999999987641   1 


Q ss_pred             -------c-CCC---CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           59 -------V-AGI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        59 -------~-~~~---~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                             + .+.   ..++++++|+..++.  .+.....||-||||++.|++.++++|++|+||||++|+-.......-+
T Consensus       109 ~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~tae  188 (249)
T COG4674         109 DKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE  188 (249)
T ss_pred             CcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHH
Confidence                   0 111   234678899999986  355678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +|+.++.  ..+|+++.|||+++..++++|.+|+.|.+.++|+.+++...
T Consensus       189 Ll~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d  236 (249)
T COG4674         189 LLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND  236 (249)
T ss_pred             HHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence            9999864  68999999999999999999999999999999999998754

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.98  E-value=1.1e-31  Score=259.28  Aligned_cols=152  Identities=23%  Similarity=0.267  Sum_probs=126.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.. |+.+++. +....+.
T Consensus       347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~  425 (529)
T TIGR02857       347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASD  425 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCCCCH
Confidence            799999999999999999         5899999999864        4579999999988865 7776653 3333455


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    ....+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|.++.
T Consensus       426 ~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~  505 (529)
T TIGR02857       426 AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA  505 (529)
T ss_pred             HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc
Confidence            6666777766652         12    2346799999999999999999999999999999999999999999998864


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                        .|+|+|++||+++.+. .||+|++|
T Consensus       506 --~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       506 --QGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             --CCCEEEEEecCHHHHH-hCCEEEeC
Confidence              4899999999999876 59999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=9.2e-32  Score=283.46  Aligned_cols=168  Identities=19%  Similarity=0.260  Sum_probs=142.0

Q ss_pred             CCcEEEEEcCCCCCccccC------------CceEEEEcCeec----cccEEEecccCCCCccCcHHHHHh-c--cC---
Q 024989            3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIF-G--VA---   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~-~--~~---   60 (259)
                      +||+++|+||||||||||.            ++|+|.++|.+.    ++.++|++|+..+++.+|+++.+. .  ++   
T Consensus       788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~  867 (1394)
T TIGR00956       788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK  867 (1394)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence            6999999999999999992            469999999864    466999999888888899987653 1  11   


Q ss_pred             CCCH----HHHHHHHHHcCCC--ccccCC----cCCHHHHHHHHHHHHHccCCc-EEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           61 GIDP----QRRAELIKVLDID--LSWRMH----KVSDGQRRRVQICMGLLKPFK-VLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        61 ~~~~----~~~~~~l~~~~l~--~~~~~~----~LSgG~~qrv~ia~al~~~p~-lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      ..+.    ++++++++.+++.  .++.++    +|||||||||+||++|+.+|+ +|+|||||+|||+.++..+++.|++
T Consensus       868 ~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~  947 (1394)
T TIGR00956       868 SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK  947 (1394)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            1222    3457889999985  355665    799999999999999999997 9999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhH-HhccCCeEEEEeCC-eEEEecChhH
Q 024989          130 ECEERGATIIYATHIFDG-LENWPSHIVYVAHG-KLQLAMPMDK  171 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~-~~~~~drv~~l~~G-~i~~~g~~~~  171 (259)
                      +++ .|+|||++||+++. +.+.||++++|++| +++..|++.+
T Consensus       948 la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~  990 (1394)
T TIGR00956       948 LAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE  990 (1394)
T ss_pred             HHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence            875 59999999999986 45679999999997 9999998743

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.97  E-value=1.1e-31  Score=250.36  Aligned_cols=170  Identities=21%  Similarity=0.311  Sum_probs=140.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccC-CCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVA-GIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~-~~~~   64 (259)
                      +||.++|+||||||||||         +++|.|+++|.++        -+.|||+||+..+|+.. +.+++..+. ..++
T Consensus       361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT-IaeNIaRf~~~~d~  439 (580)
T COG4618         361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT-IAENIARFGEEADP  439 (580)
T ss_pred             CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc-HHHHHHhccccCCH
Confidence            799999999999999999         5899999999764        25699999999998874 667776664 3455


Q ss_pred             HHHHHHHHHcCC-------C--ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-------D--LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-------~--~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +.+-+..+..+.       +  -+..+    ..||||||||++|||||..+|.+++||||-++||....+.+.+.|....
T Consensus       440 ~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k  519 (580)
T COG4618         440 EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK  519 (580)
T ss_pred             HHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH
Confidence            544333333221       2  13333    5799999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       .+|.|+|++||..+.+. .+|+|.+|++|++...|+.+|+..+
T Consensus       520 -~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         520 -ARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             -HcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHH
Confidence             46999999999988665 5899999999999999999998753

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=2e-31  Score=282.65  Aligned_cols=168  Identities=18%  Similarity=0.280  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||.++|+|+||||||||        .++|+|.++|.++        +++++|+||++.+|.. |+++++......+.++
T Consensus      1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdee 1322 (1490)
T TIGR01271      1244 GGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEE 1322 (1490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccCCCHHH
Confidence            799999999999999999        3799999999864        5679999999999876 7887774333345677


Q ss_pred             HHHHHHHcCCC---------ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           67 RAELIKVLDID---------LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        67 ~~~~l~~~~l~---------~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      +.++++..++.         ++..+    .+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..  
T Consensus      1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-- 1400 (1490)
T TIGR01271      1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-- 1400 (1490)
T ss_pred             HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--
Confidence            77888887762         12222    4799999999999999999999999999999999999999999999864  


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .++|||+|||.++.+.. ||+|++|++|+|++.|+++++.+
T Consensus      1401 ~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1401 SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence            47999999999998887 89999999999999999999875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=1.2e-31  Score=282.54  Aligned_cols=172  Identities=20%  Similarity=0.208  Sum_probs=145.0

Q ss_pred             CCcEEEEEcCCCCCccccC-------------CceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||+             ++|+|.++|.+.       ++.++|++|+..+++.+|+.+.+. .  .
T Consensus        86 ~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~  165 (1394)
T TIGR00956        86 PGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC  165 (1394)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHh
Confidence            7999999999999999992             589999999754       345899999988899999987542 1  1


Q ss_pred             C-------CCCHH----H-HHHHHHHcCCC--ccc-----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989           60 A-------GIDPQ----R-RAELIKVLDID--LSW-----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  120 (259)
Q Consensus        60 ~-------~~~~~----~-~~~~l~~~~l~--~~~-----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~  120 (259)
                      .       +.+.+    + .+.+++.+++.  .+.     .++.|||||||||+||++|+.+|++++|||||+|||+.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~  245 (1394)
T TIGR00956       166 KTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA  245 (1394)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHH
Confidence            1       12221    2 24578889985  233     4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          121 ADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       121 ~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ..+.+.|++++++.|+|||+++|+. +++.+++|++++|++|+++..|+++++.+
T Consensus       246 ~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~  300 (1394)
T TIGR00956       246 LEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ  300 (1394)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence            9999999999865699999999996 78999999999999999999999987743

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.4e-31  Score=226.74  Aligned_cols=170  Identities=24%  Similarity=0.322  Sum_probs=141.6

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccc--------cEEEecccCC--CCccCcHHHHHh--cc-
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR--------EVAFAGFEVP--IQMDVSAEKMIF--GV-   59 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~--------~i~~v~~~~~--~~~~lt~~~~~~--~~-   59 (259)
                      -+|+|+.|+|.||+|||||         +++|+|.++|.++.+        .++-|+|++.  .++.+|++|++.  .. 
T Consensus        30 ~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~R  109 (263)
T COG1101          30 AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESR  109 (263)
T ss_pred             cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence            4899999999999999999         599999999987632        2445778764  478999987652  11 


Q ss_pred             ---CCCC----H---HHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989           60 ---AGID----P---QRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  125 (259)
Q Consensus        60 ---~~~~----~---~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~  125 (259)
                         +++.    .   +...+.++.+++.    ++.++.-|||||||-++++.|.++.|++|+|||.|++|||.....+++
T Consensus       110 g~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~  189 (263)
T COG1101         110 GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME  189 (263)
T ss_pred             CcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHH
Confidence               1222    1   2234556666653    466889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~  171 (259)
                      .=.++.++.+.|.+||||+|+.+..+.+|.++|++|+|+.+..-++
T Consensus       190 lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~  235 (263)
T COG1101         190 LTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE  235 (263)
T ss_pred             HHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence            9999988889999999999999999999999999999999765544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.97  E-value=3.3e-31  Score=254.48  Aligned_cols=167  Identities=27%  Similarity=0.343  Sum_probs=137.2

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC-----------
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA-----------   60 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~-----------   60 (259)
                      -+|+-++|+|+||||||||         +++|+|...+.   -+++|++|++..+...|+.+.+. +..           
T Consensus        27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~  103 (530)
T COG0488          27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEE  103 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC---ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHH
Confidence            3799999999999999999         48999988764   25999999999887767654321 110           


Q ss_pred             ------------------------CCC-HHHHHHHHHHcCCCc-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 024989           61 ------------------------GID-PQRRAELIKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD  114 (259)
Q Consensus        61 ------------------------~~~-~~~~~~~l~~~~l~~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~g  114 (259)
                                              ++. ..++..++..+++.. ++++++||||||.||+||+||+.+|++||||||||+
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNH  183 (530)
T COG0488         104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH  183 (530)
T ss_pred             HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence                                    011 133456677777764 788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEE-ecChhHHHHH
Q 024989          115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDKVKEA  175 (259)
Q Consensus       115 LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~~  175 (259)
                      ||..+..++.++|.++   .| |+|+||||.+++..+|++|+.++.|++.. .|+.+...+.
T Consensus       184 LD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~  241 (530)
T COG0488         184 LDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ  241 (530)
T ss_pred             cCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence            9999999999999854   46 99999999999999999999999998865 5777766543

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.97  E-value=8.4e-32  Score=273.53  Aligned_cols=174  Identities=19%  Similarity=0.302  Sum_probs=153.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHH---hccCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMI---FGVAG   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~---~~~~~   61 (259)
                      +||..+++|+||+||||+         +++|++.+.|.+.         ++.+||+||...+.+.+|.+|.+   ....|
T Consensus       590 ~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG  669 (885)
T KOG0059|consen  590 PGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG  669 (885)
T ss_pred             CCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC
Confidence            689999999999999999         5899999999764         34599999999999999998754   33455


Q ss_pred             CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      +..    +.++++++.+++.  .+++++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+|+++.+..+ +|
T Consensus       670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g  748 (885)
T KOG0059|consen  670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NG  748 (885)
T ss_pred             CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence            443    3356788999985  4778999999999999999999999999999999999999999999999999865 56


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  177 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~  177 (259)
                      +.||++||.|+|++.+|||+.+|.+|++.+.|+++++....+
T Consensus       749 ~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG  790 (885)
T KOG0059|consen  749 KAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG  790 (885)
T ss_pred             CEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence            799999999999999999999999999999999999986543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=4e-31  Score=229.88  Aligned_cols=98  Identities=17%  Similarity=0.292  Sum_probs=89.1

Q ss_pred             HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      .++++.+++.   .++++.+||||||||++||+||+.+|  ++|||||||+|||+..+..++++|+++++ .|.|||++|
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~it  196 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVE  196 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence            5678888884   36789999999999999999999998  59999999999999999999999999865 599999999


Q ss_pred             CChhHHhccCCeEEEE------eCCeEEEec
Q 024989          143 HIFDGLENWPSHIVYV------AHGKLQLAM  167 (259)
Q Consensus       143 H~~~~~~~~~drv~~l------~~G~i~~~g  167 (259)
                      |+++++. +||++++|      ++|+|++.|
T Consensus       197 H~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         197 HDEDTIR-AADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             eCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence            9999875 89999999      999999865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.97  E-value=1.2e-31  Score=282.54  Aligned_cols=172  Identities=22%  Similarity=0.308  Sum_probs=146.0

Q ss_pred             CCcEEEEEcCCCCCccccC---------C---ceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh---ccCC-
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S---SGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF---GVAG-   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~---~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~-   61 (259)
                      +||+++|+||||||||||+         +   +|+|.++|.+.     ++.++|++|+..+++.+|+.+.+.   ...+ 
T Consensus       190 ~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~  269 (1470)
T PLN03140        190 PSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGV  269 (1470)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCC
Confidence            7999999999999999993         4   89999999864     456999999988899999987542   1111 


Q ss_pred             ---------CCH-H---------------------------HHHHHHHHcCCCc-------cccCCcCCHHHHHHHHHHH
Q 024989           62 ---------IDP-Q---------------------------RRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICM   97 (259)
Q Consensus        62 ---------~~~-~---------------------------~~~~~l~~~~l~~-------~~~~~~LSgG~~qrv~ia~   97 (259)
                               ... +                           ..+.+++.+||..       +..++.|||||||||+||+
T Consensus       270 ~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~  349 (1470)
T PLN03140        270 GTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGE  349 (1470)
T ss_pred             CCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehh
Confidence                     000 0                           1245788899852       4467899999999999999


Q ss_pred             HHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989           98 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus        98 al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+. +++.++||+|++|++|+++..|+.+++..
T Consensus       350 aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~  427 (1470)
T PLN03140        350 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILE  427 (1470)
T ss_pred             hhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence            999999999999999999999999999999999775689999999996 68999999999999999999999988764

>PLN03140 ABC transporter G family member; Provisional

Probab=99.97  E-value=3.7e-31  Score=278.94  Aligned_cols=167  Identities=19%  Similarity=0.275  Sum_probs=141.5

Q ss_pred             CCcEEEEEcCCCCCccccC-----------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh-c----cC-
Q 024989            3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF-G----VA-   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~-~----~~-   60 (259)
                      +||+++|+||||||||||+           .+|+|.++|.+.     ++.++|++|+..+++.+|+.+.+. .    .. 
T Consensus       905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~  984 (1470)
T PLN03140        905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK  984 (1470)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC
Confidence            6999999999999999993           479999999754     355899999988889999987542 1    11 


Q ss_pred             CCCH----HHHHHHHHHcCCC--ccccC-----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           61 GIDP----QRRAELIKVLDID--LSWRM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        61 ~~~~----~~~~~~l~~~~l~--~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      ..+.    +.++++++.+++.  .+..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus       985 ~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140        985 EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            1222    2357889999985  34444     58999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChh-HHhccCCeEEEEeC-CeEEEecChh
Q 024989          130 ECEERGATIIYATHIFD-GLENWPSHIVYVAH-GKLQLAMPMD  170 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~-~~~~~~drv~~l~~-G~i~~~g~~~  170 (259)
                      +++ .|+|||++||+++ ++.+.||++++|++ |+++..|++.
T Consensus      1065 l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1065 TVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             HHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence            875 5999999999998 57789999999996 8999999864

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.97  E-value=3.8e-31  Score=255.56  Aligned_cols=140  Identities=24%  Similarity=0.317  Sum_probs=117.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHH-hccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~   65 (259)
                      +||.++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+|.. |+++++ ++....+.+
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e  438 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPDATDE  438 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCCCCHH
Confidence            799999999999999999         5899999999764       4679999999998876 566554 444445667


Q ss_pred             HHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++..++.         .+.    .-.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+.. 
T Consensus       439 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-  517 (529)
T TIGR02868       439 ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-  517 (529)
T ss_pred             HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-
Confidence            777788777652         122    235799999999999999999999999999999999999999999998753 


Q ss_pred             hcCcEEEEEeCCh
Q 024989          133 ERGATIIYATHIF  145 (259)
Q Consensus       133 ~~g~tiii~sH~~  145 (259)
                       .++|+|++||++
T Consensus       518 -~~~TvIiItHrl  529 (529)
T TIGR02868       518 -SGKTVVVITHHL  529 (529)
T ss_pred             -CCCEEEEEecCC
Confidence             479999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=8.9e-31  Score=214.85  Aligned_cols=117  Identities=33%  Similarity=0.463  Sum_probs=104.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------ccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+|+||||||||         +++|+|+++|.+..        +.++|++|                       
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-----------------------   80 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-----------------------   80 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-----------------------
Confidence            689999999999999999         47999999987532        23444443                       


Q ss_pred             HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                                         ||+||+||++||++++.+|++++|||||+|||+.++..+++.|.++... +.|+|++||++
T Consensus        81 -------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~  140 (157)
T cd00267          81 -------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP  140 (157)
T ss_pred             -------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence                               9999999999999999999999999999999999999999999988654 79999999999


Q ss_pred             hHHhccCCeEEEEeCCe
Q 024989          146 DGLENWPSHIVYVAHGK  162 (259)
Q Consensus       146 ~~~~~~~drv~~l~~G~  162 (259)
                      +++..+||++++|++|+
T Consensus       141 ~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         141 ELAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHhCCEEEEEeCcC
Confidence            99999999999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2e-30  Score=221.65  Aligned_cols=170  Identities=21%  Similarity=0.221  Sum_probs=141.9

Q ss_pred             CCcEEEEEcCCCCCccccC-----------CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc----
Q 024989            3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG----   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~----   58 (259)
                      +||+.+|+||||||||||.           ++|+|.++|+++         +..+...+|.|.-++..+..+++..    
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~  108 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA  108 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence            6999999999999999993           899999999875         2346666788888888888776531    


Q ss_pred             cCC---CC---HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           59 VAG---ID---PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        59 ~~~---~~---~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      .++   ..   .+...+.++.++++   .++.+. .+|||+|+|..|+++++.+|++.|||||-||||..+-+.+.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~  188 (251)
T COG0396         109 RRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN  188 (251)
T ss_pred             hhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence            111   11   24456788888886   355554 699999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccC-CeEEEEeCCeEEEecChhHHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWP-SHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~-drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++.. .|.++++|||+-..+..+- |+|.+|.+|+|+.+|.+ ++..
T Consensus       189 ~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~  233 (251)
T COG0396         189 ALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE  233 (251)
T ss_pred             HHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence            9865 6999999999988777653 99999999999999999 6654

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=9.8e-31  Score=215.52  Aligned_cols=176  Identities=22%  Similarity=0.308  Sum_probs=143.6

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----c------------cccEEEecccCCCCccCcHH--
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----W------------RREVAFAGFEVPIQMDVSAE--   53 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----~------------~~~i~~v~~~~~~~~~lt~~--   53 (259)
                      -+||+++|+|.||||||||         +++|+|.|.-.+     +            +-.-||+-|++..-..+.+.  
T Consensus        30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG  109 (258)
T COG4107          30 YPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG  109 (258)
T ss_pred             cCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence            4799999999999999999         589999997532     1            12357887766432222221  


Q ss_pred             ----HHH--hcc--CCCCHHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           54 ----KMI--FGV--AGIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        54 ----~~~--~~~--~~~~~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                          |-+  .+.  |+.-++...++++.++++.   +..+.++|||||||+.|||-|+..|+++++||||.|||...+..
T Consensus       110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQAR  189 (258)
T COG4107         110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR  189 (258)
T ss_pred             CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHH
Confidence                211  121  2322455678999999863   56789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  177 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~  177 (259)
                      ++++++.+..+.|.+++++|||+..+.-++||..+|++|++++.|-++.+.....
T Consensus       190 LLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~  244 (258)
T COG4107         190 LLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPH  244 (258)
T ss_pred             HHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCC
Confidence            9999999999899999999999999999999999999999999999988876543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=9.5e-31  Score=256.38  Aligned_cols=171  Identities=21%  Similarity=0.347  Sum_probs=147.9

Q ss_pred             CCcEEEEEcCCCCCccccC------------CceEEEEcCee-----ccccEEEecccCCCCccCcHHHHHh-----ccC
Q 024989            3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGE-----WRREVAFAGFEVPIQMDVSAEKMIF-----GVA   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~-----~~~~i~~v~~~~~~~~~lt~~~~~~-----~~~   60 (259)
                      +||+.+|+||||||||||.            .+|+|.++|+.     +++..|||.|+..+++.+||+|.+.     .++
T Consensus        55 ~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp  134 (613)
T KOG0061|consen   55 PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLP  134 (613)
T ss_pred             cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCC
Confidence            6999999999999999993            58999999953     3566899999999999999998552     222


Q ss_pred             C-CC----HHHHHHHHHHcCCC--ccccC-----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           61 G-ID----PQRRAELIKVLDID--LSWRM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        61 ~-~~----~~~~~~~l~~~~l~--~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      . .+    .++++++++.+++.  .+..+     +.+|||||+||+||.-|+++|.+|+|||||+|||..+..++.+.|+
T Consensus       135 ~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk  214 (613)
T KOG0061|consen  135 SSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLK  214 (613)
T ss_pred             CCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence            2 12    24578899999986  34555     4699999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          129 KECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++++ |+|||++-|.. .++.+..|++++|.+|+++..|+++++.+
T Consensus       215 ~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~  260 (613)
T KOG0061|consen  215 RLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE  260 (613)
T ss_pred             HHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence            99986 99999999998 46888899999999999999999987654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.97  E-value=2.7e-30  Score=255.71  Aligned_cols=148  Identities=15%  Similarity=0.263  Sum_probs=123.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-cc-------CCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GV-------AGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~-------~~~~~~   65 (259)
                      +||.++|+||||||||||         +++|+|.+++   ++.++|++|++.+++. |+.+++. +.       .....+
T Consensus       477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~  552 (659)
T TIGR00954       477 SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDK  552 (659)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHH
Confidence            799999999999999999         3789998865   4579999999887776 7776553 22       122345


Q ss_pred             HHHHHHHHcCCC--cccc---------CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           66 RRAELIKVLDID--LSWR---------MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        66 ~~~~~l~~~~l~--~~~~---------~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      ++.++++.+++.  .+++         ..+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++    .
T Consensus       553 ~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~  628 (659)
T TIGR00954       553 DLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----F  628 (659)
T ss_pred             HHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----c
Confidence            667888888874  1222         368999999999999999999999999999999999999999988864    3


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEe
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      |.|+|++||+++.+ ..||++++|+
T Consensus       629 ~~tvI~isH~~~~~-~~~d~il~l~  652 (659)
T TIGR00954       629 GITLFSVSHRKSLW-KYHEYLLYMD  652 (659)
T ss_pred             CCEEEEEeCchHHH-HhCCEEEEEe
Confidence            89999999999987 5699999996

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=3.2e-30  Score=273.47  Aligned_cols=162  Identities=22%  Similarity=0.321  Sum_probs=133.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~   72 (259)
                      +||.++|+||||||||||         +++|+|.++|     .++|++|++.+++. |+.+++ ++.. .+.++..++++
T Consensus       451 ~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----~iayv~Q~~~l~~~-Ti~eNI~~g~~-~~~~~~~~~~~  523 (1490)
T TIGR01271       451 KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----RISFSPQTSWIMPG-TIKDNIIFGLS-YDEYRYTSVIK  523 (1490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----EEEEEeCCCccCCc-cHHHHHHhccc-cchHHHHHHHH
Confidence            799999999999999999         4899999988     49999999888765 887765 4432 23233333333


Q ss_pred             HcCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEE
Q 024989           73 VLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATI  138 (259)
Q Consensus        73 ~~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~-l~~~~~~~g~ti  138 (259)
                      ..++       +      ...+..+||||||||++||||++.+|+++||||||++||+...+.+++. +.++.  .|+|+
T Consensus       524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tv  601 (1490)
T TIGR01271       524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTR  601 (1490)
T ss_pred             HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeE
Confidence            2222       1      1235679999999999999999999999999999999999999999975 56653  48999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus       602 ilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       602 ILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             EEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999875 99999999999999999998865

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=3.6e-30  Score=228.18  Aligned_cols=103  Identities=20%  Similarity=0.324  Sum_probs=92.4

Q ss_pred             HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~---p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                      .+..++++.+++.   .++++.+|||||+||+.||++|+.+   |+++||||||+|||+..+..+++.|+++.+ .|.||
T Consensus       147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tv  225 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTV  225 (261)
T ss_pred             HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence            3455688888885   3678899999999999999999996   799999999999999999999999999865 59999


Q ss_pred             EEEeCChhHHhccCCeEEEE------eCCeEEEecCh
Q 024989          139 IYATHIFDGLENWPSHIVYV------AHGKLQLAMPM  169 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l------~~G~i~~~g~~  169 (259)
                      |++||+++++. .||++++|      ++|++++.|++
T Consensus       226 IiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         226 VVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence            99999999986 69999999      89999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.97  E-value=6.5e-30  Score=271.70  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=134.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||.++|+||||||||||         +++|+|.++|     .++|++|++.++. .|+.+++......+.++.+++++.
T Consensus       663 ~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----~i~yv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~  736 (1522)
T TIGR00957       663 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----SVAYVPQQAWIQN-DSLRENILFGKALNEKYYQQVLEA  736 (1522)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----EEEEEcCCccccC-CcHHHHhhcCCccCHHHHHHHHHH
Confidence            799999999999999999         4899999987     5999999987764 577776642222344444444443


Q ss_pred             cCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCcEEE
Q 024989           74 LDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC-EERGATII  139 (259)
Q Consensus        74 ~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~-~~~g~tii  139 (259)
                      .++       +      ...+..+||||||||++||||++.+|+++||||||++||+...+.+++.+.+.. ...|+|+|
T Consensus       737 ~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvI  816 (1522)
T TIGR00957       737 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRI  816 (1522)
T ss_pred             hCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEE
Confidence            332       1      134567899999999999999999999999999999999999999999886531 12479999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus       817 lvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       817 LVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ  850 (1522)
T ss_pred             EEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence            99999999876 99999999999999999998865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=209.51  Aligned_cols=156  Identities=22%  Similarity=0.301  Sum_probs=132.6

Q ss_pred             CCCcEEEEEcCCCCCccccC------------CceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccC--
Q 024989            2 VEPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVA--   60 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~--   60 (259)
                      -|||++.|+||||||||||.            .+|++.++++++      ++++|+.+|+..+|+.+++.+++ +.+.  
T Consensus        26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~  105 (213)
T COG4136          26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT  105 (213)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc
Confidence            48999999999999999993            589999999865      57899999999999999987654 3332  


Q ss_pred             --CCC-HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           61 --GID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        61 --~~~-~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                        +.. +..++..+++.++.  .++.+.+||||||-||++-|+|+..|+.++||||++.||..-+.++.+++....+..|
T Consensus       106 ~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag  185 (213)
T COG4136         106 LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG  185 (213)
T ss_pred             cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence              211 22356788888886  4678999999999999999999999999999999999999999999999988888889


Q ss_pred             cEEEEEeCChhHHhccCCeEEEE
Q 024989          136 ATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      .-.|++|||...+. ...||+-|
T Consensus       186 iPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         186 IPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             CCeEEEecccccCC-CCCeeeee
Confidence            99999999999888 45566544

>PLN03130 ABC transporter C family member; Provisional

Probab=99.97  E-value=1.8e-29  Score=268.84  Aligned_cols=163  Identities=21%  Similarity=0.267  Sum_probs=134.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCc-eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSS-GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~-G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~   72 (259)
                      +||.++|+||||||||||         +++ |+|.+     +..++|++|++.++.. |+++++..-...+.+++.++++
T Consensus       642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----~~~Iayv~Q~p~Lfng-TIreNI~fg~~~d~e~y~~vl~  715 (1622)
T PLN03130        642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----RGTVAYVPQVSWIFNA-TVRDNILFGSPFDPERYERAID  715 (1622)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----cCeEEEEcCccccCCC-CHHHHHhCCCcccHHHHHHHHH
Confidence            799999999999999999         478 89975     4579999999888765 6776654222346677777777


Q ss_pred             HcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEE
Q 024989           73 VLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATI  138 (259)
Q Consensus        73 ~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~ti  138 (259)
                      ..++.         .+    .+-.+||||||||++||||+..+|+++||||||++||+...+.+++ .+....  .|+|+
T Consensus       716 a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTv  793 (1622)
T PLN03130        716 VTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTR  793 (1622)
T ss_pred             HhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEE
Confidence            76652         11    2345799999999999999999999999999999999998887764 555443  48999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus       794 IlVTH~l~~l~~-aD~Ii~L~~G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        794 VLVTNQLHFLSQ-VDRIILVHEGMIKEEGTYEELSN  828 (1622)
T ss_pred             EEEECCHhHHHh-CCEEEEEeCCEEEEeCCHHHHHh
Confidence            999999987765 99999999999999999999875

>PLN03232 ABC transporter C family member; Provisional

Probab=99.97  E-value=1.6e-29  Score=268.43  Aligned_cols=163  Identities=19%  Similarity=0.242  Sum_probs=133.0

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~   72 (259)
                      +||.++|+||||||||||.         ++|.+.    .+++.++|++|++.++.. |+++++ ++. ..+.+++.++++
T Consensus       642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~-~~~~e~~~~vl~  715 (1495)
T PLN03232        642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----VIRGSVAYVPQVSWIFNA-TVRENILFGS-DFESERYWRAID  715 (1495)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----EecCcEEEEcCccccccc-cHHHHhhcCC-ccCHHHHHHHHH
Confidence            7999999999999999993         566553    346789999999988865 677665 443 346677777777


Q ss_pred             HcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEE
Q 024989           73 VLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATI  138 (259)
Q Consensus        73 ~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~-l~~~~~~~g~ti  138 (259)
                      ..++.         .+    .+-.+||||||||++||||+..+|+++||||||++||+.+.+.+++. +... . .|+|+
T Consensus       716 ~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l-~~kT~  793 (1495)
T PLN03232        716 VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-L-KGKTR  793 (1495)
T ss_pred             HhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-h-cCCEE
Confidence            76652         11    23357999999999999999999999999999999999999888765 4443 2 48999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus       794 IlvTH~~~~l~~-aD~Ii~L~~G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        794 VLVTNQLHFLPL-MDRIILVSEGMIKEEGTFAELSK  828 (1495)
T ss_pred             EEEECChhhHHh-CCEEEEEeCCEEEEecCHHHHHh
Confidence            999999998765 99999999999999999999875

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=3.5e-29  Score=207.74  Aligned_cols=177  Identities=15%  Similarity=0.284  Sum_probs=148.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC--CCccCcHHHHHhc---c-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP--IQMDVSAEKMIFG---V-   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~--~~~~lt~~~~~~~---~-   59 (259)
                      +|+.++|+|.||||||||         |++|+|.++|+.+        .+.|.+++|+++  +.|.+.+...+-+   + 
T Consensus        38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~  117 (267)
T COG4167          38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN  117 (267)
T ss_pred             CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence            689999999999999999         6999999999754        356888988875  3444544444322   1 


Q ss_pred             CCCCH----HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 AGIDP----QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+++    +++.+-+..+|+-+   +-++..||-||||||++||||+.+|+++|.||..++||...+.++.+++-++.+
T Consensus       118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQe  197 (267)
T COG4167         118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE  197 (267)
T ss_pred             ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHH
Confidence            12232    33456778888853   457899999999999999999999999999999999999999999999999998


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS  179 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~  179 (259)
                      +.|.+.|+++.++..+..++|.|+||+.|++++.|.+.++.......
T Consensus       198 k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~  244 (267)
T COG4167         198 KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHE  244 (267)
T ss_pred             HhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccH
Confidence            88999999999999999999999999999999999999998765443

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=2.6e-29  Score=216.76  Aligned_cols=167  Identities=18%  Similarity=0.318  Sum_probs=142.3

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEE-ecccCCCCccCcHHHHHh---ccCCCCH----
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAF-AGFEVPIQMDVSAEKMIF---GVAGIDP----   64 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~-v~~~~~~~~~lt~~~~~~---~~~~~~~----   64 (259)
                      -+||.++|+|+||||||||         ||+|+|.+.|+-     ++ +.....+.+.+|.++++.   .+.|...    
T Consensus        51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-----~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~  125 (249)
T COG1134          51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-----APLIELGAGFDPELTGRENIYLRGLILGLTRKEID  125 (249)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-----ehhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence            3799999999999999999         699999999862     22 222334567888887653   2345443    


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      +.++++++.-+|.  .+.|++++|.||+-|++++.|...+|++||+||-.+--|+..+++-.+.+.++.+ ++.|||++|
T Consensus       126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VS  204 (249)
T COG1134         126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVS  204 (249)
T ss_pred             HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEE
Confidence            3456777777775  5889999999999999999999999999999999999999999999999999865 479999999


Q ss_pred             CChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          143 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||++.+.++|||+++|++|++...|+++++..
T Consensus       205 Hd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~  236 (249)
T COG1134         205 HDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP  236 (249)
T ss_pred             CCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence            99999999999999999999999999999865

>PLN03073 ABC transporter F family; Provisional

Probab=99.96  E-value=9.5e-30  Score=253.10  Aligned_cols=106  Identities=26%  Similarity=0.234  Sum_probs=93.4

Q ss_pred             HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           65 QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        65 ~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      +++.+++..+++.   .++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++    |.|||+|
T Consensus       322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviiv  397 (718)
T PLN03073        322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVV  397 (718)
T ss_pred             HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEE
Confidence            3455677778874   35678999999999999999999999999999999999999999999999764    6799999


Q ss_pred             eCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989          142 THIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE  174 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~  174 (259)
                      |||++++..+||++++|++|++. ..|+.+++..
T Consensus       398 sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~  431 (718)
T PLN03073        398 SHAREFLNTVVTDILHLHGQKLVTYKGDYDTFER  431 (718)
T ss_pred             ECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            99999999999999999999996 5777766544

>PTZ00243 ABC transporter; Provisional

Probab=99.96  E-value=3.4e-29  Score=266.21  Aligned_cols=165  Identities=19%  Similarity=0.222  Sum_probs=130.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHH---
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAEL---   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~---   70 (259)
                      +||+++|+||||||||||         +++|+|.+.     +.++|++|++.++. .|+.+++......+.++..++   
T Consensus       685 ~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~~~~~~~~~~  758 (1560)
T PTZ00243        685 RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----RSIAYVPQQAWIMN-ATVRGNILFFDEEDAARLADAVRV  758 (1560)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----CeEEEEeCCCccCC-CcHHHHHHcCChhhHHHHHHHHHH
Confidence            799999999999999999         479999764     56999999987764 577776543222222233333   


Q ss_pred             ------HHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           71 ------IKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        71 ------l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                            ++.+  |+.  .+++..+||||||||++|||||+.+|+++||||||++||+.....+++.+..... .|+|+|+
T Consensus       759 ~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIl  837 (1560)
T PTZ00243        759 SQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVL  837 (1560)
T ss_pred             hhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEE
Confidence                  3333  332  2567889999999999999999999999999999999999998888764432222 4899999


Q ss_pred             EeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +||+++.+. .||+|++|++|+++..|+.+++...
T Consensus       838 vTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~~  871 (1560)
T PTZ00243        838 ATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRT  871 (1560)
T ss_pred             EeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHhC
Confidence            999999986 5999999999999999999998653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.96  E-value=2.5e-28  Score=234.59  Aligned_cols=165  Identities=18%  Similarity=0.158  Sum_probs=136.3

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCC-CCccCcHHHHHhccC-CCCHHHHHHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMIFGVA-GIDPQRRAEL   70 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~-~~~~lt~~~~~~~~~-~~~~~~~~~~   70 (259)
                      -.|+-++|+||||+|||||         +.+|+|.+.-.   -++||..|+.. +.+..|+.+.+.... ......+...
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~---v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~  422 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET---VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAY  422 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHH
Confidence            3799999999999999999         36888877643   35899998763 345667777665433 2235667889


Q ss_pred             HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +..|++.   ..+++..||||||.||.||+.++.+|.+||||||||+||..++..+.+.|.++    ..|||+||||..+
T Consensus       423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~F  498 (530)
T COG0488         423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYF  498 (530)
T ss_pred             HHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            9999996   35789999999999999999999999999999999999999999999988764    4599999999999


Q ss_pred             HhccCCeEEEEeCCeEEEe-cChhHHHH
Q 024989          148 LENWPSHIVYVAHGKLQLA-MPMDKVKE  174 (259)
Q Consensus       148 ~~~~~drv~~l~~G~i~~~-g~~~~~~~  174 (259)
                      +..+|++++.+.+ .+... |+.++..+
T Consensus       499 l~~va~~i~~~~~-~~~~~~g~y~~y~~  525 (530)
T COG0488         499 LDRVATRIWLVED-KVEEFEGGYEDYLE  525 (530)
T ss_pred             HHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence            9999999999998 66554 77776544

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.9e-29  Score=232.23  Aligned_cols=171  Identities=19%  Similarity=0.271  Sum_probs=142.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +|+.++++||||+||||+         .++|+|.++|+++        |+.||.|||+..+|.+.-.++.-++..+.+.+
T Consensus       563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asne  642 (790)
T KOG0056|consen  563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNE  642 (790)
T ss_pred             CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChH
Confidence            699999999999999999         3899999999975        46799999999998876655554554444444


Q ss_pred             HHHHHHHHc-------CCCc--c----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVL-------DIDL--S----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~-------~l~~--~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++.+..       +++.  +    .+--.|||||||||+|||+++..|.+++|||.|++||-.+.+.+...|.++|+
T Consensus       643 evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca  722 (790)
T KOG0056|consen  643 EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA  722 (790)
T ss_pred             HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc
Confidence            444433333       2321  1    23347999999999999999999999999999999999999999999999985


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                        |.|-|++.|.++.+-. ||-|+++++|+|++.|..+|+....
T Consensus       723 --~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~rd  763 (790)
T KOG0056|consen  723 --NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRD  763 (790)
T ss_pred             --CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhcc
Confidence              7899999999999987 8999999999999999999987653

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.96  E-value=8.5e-29  Score=211.15  Aligned_cols=142  Identities=17%  Similarity=0.220  Sum_probs=111.8

Q ss_pred             CCcEEEEEcCCCCCccccC---------C---------ceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHhcc
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S---------SGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIFGV   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~---------~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~~~   59 (259)
                      +| +++|+||||||||||+         .         .|++.+.|.+.     .+.++|++|++..+.         ..
T Consensus        22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~---------~~   91 (197)
T cd03278          22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY---------SI   91 (197)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce---------eE
Confidence            35 9999999999999993         1         23566666553     356899999876651         11


Q ss_pred             CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           60 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        60 ~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                        ...+++.++++..+ ..++++.+||+|||||++||++++    .+|+++||||||+|||+..+..+++.|+++.+  +
T Consensus        92 --~~~~~~~~~l~~~~-~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~  166 (197)
T cd03278          92 --ISQGDVSEIIEAPG-KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--E  166 (197)
T ss_pred             --EehhhHHHHHhCCC-ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--C
Confidence              01345666776621 146778999999999999999997    46799999999999999999999999998753  6


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeC
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      .|||++||+++++ .+||+++.|..
T Consensus       167 ~tiIiitH~~~~~-~~~d~v~~~~~  190 (197)
T cd03278         167 TQFIVITHRKGTM-EAADRLYGVTM  190 (197)
T ss_pred             CEEEEEECCHHHH-hhcceEEEEEe
Confidence            8999999999987 47999998875

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.96  E-value=1.4e-28  Score=207.32  Aligned_cols=188  Identities=69%  Similarity=1.127  Sum_probs=161.1

Q ss_pred             CCcEEEEEcCCCCCccccC----------------------------CceEEEEcCeeccccEEEecccCCCCccCcHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT----------------------------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK   54 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~----------------------------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~   54 (259)
                      .|.-..++|.||+|||||+                            +||..+|.|.+|.+.+++-+ +.+++.++++++
T Consensus        39 ~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~  117 (291)
T KOG2355|consen   39 AGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH  117 (291)
T ss_pred             CCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHH
Confidence            4677889999999999993                            35555666666666666554 678888999999


Q ss_pred             HHhccCCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           55 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        55 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      ++++..+.++++.+++++.++++..|+.+.+|-|||+||.|++.|++.-++|+|||-|-.||..++..+++++++.|.++
T Consensus       118 mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~R  197 (291)
T KOG2355|consen  118 MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQR  197 (291)
T ss_pred             HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhc
Confidence            99999888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh-hhHHHHHHHHHhhh
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK-LSLMRTVESWLRKE  191 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~-~~~~~~~~~~~~~~  191 (259)
                      |.||++.||..+-++.+..+++.|+.|+++..-+.+.+.+-.. .......++|+..+
T Consensus       198 gatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~~~nl~s~veswlr~E  255 (291)
T KOG2355|consen  198 GATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTSPNLLSTVESWLRKE  255 (291)
T ss_pred             CcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhccchHHHHHHHHHHhh
Confidence            9999999999999999999999999999999777666655322 23444566776643

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-28  Score=225.54  Aligned_cols=171  Identities=20%  Similarity=0.305  Sum_probs=142.8

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~   64 (259)
                      ..|+.++|+|+||+||||+         .++|.|.++|+++        ++.||.+||+..+|.+.-.+++-++....+.
T Consensus       287 ~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~  366 (497)
T COG5265         287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA  366 (497)
T ss_pred             cCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccH
Confidence            4689999999999999999         4899999999875        4569999999999888655565565544444


Q ss_pred             HHHHHHHHHcCC-------C--ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-------D--LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-------~--~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++....+.+.+       +  .+.++    -.|||||||||+|||+++.+|++|+|||.|++||..+.+.+...|++..
T Consensus       367 eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~  446 (497)
T COG5265         367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS  446 (497)
T ss_pred             HHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence            444444444332       1  13333    4699999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|.|-+++.|.+..+.. ||.|++|++|+|++.|+-+++...
T Consensus       447 --~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~  487 (497)
T COG5265         447 --AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA  487 (497)
T ss_pred             --CCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence              58999999999999988 899999999999999999998765

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=226.20  Aligned_cols=170  Identities=23%  Similarity=0.310  Sum_probs=142.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF----   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~----   57 (259)
                      +||+++|.|-=|+|+|-|         +++|+|.++|++.         +..++|+|.+.   .++..+++.+++.    
T Consensus       284 ~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l  363 (500)
T COG1129         284 AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL  363 (500)
T ss_pred             CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhh
Confidence            799999999999999977         3799999999864         23589998654   4567777765431    


Q ss_pred             -ccC---CCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989           58 -GVA---GIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF  126 (259)
Q Consensus        58 -~~~---~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~  126 (259)
                       .+.   -++.    +..+++.+.+++.   .+.++.+||||+||||.|||+|+.+|++|||||||.|+|..++.+++++
T Consensus       364 ~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~l  443 (500)
T COG1129         364 RRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL  443 (500)
T ss_pred             hhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHH
Confidence             111   1232    2245677888874   4678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      |+++++ +|++||++|-+++|+..+||||+||++|+++..-+.+++.
T Consensus       444 i~~lA~-~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~t  489 (500)
T COG1129         444 IRELAA-EGKAILMISSELPELLGLSDRILVMREGRIVGELDREEAT  489 (500)
T ss_pred             HHHHHH-CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence            999987 5999999999999999999999999999999977776643

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.95  E-value=1.3e-27  Score=205.75  Aligned_cols=153  Identities=16%  Similarity=0.141  Sum_probs=109.6

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEEEcCee-----------------ccccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGE-----------------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~-----------------~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +|++++|+||||||||||++.=...+.|..                 ....++++++......  ++.    ...+.+.+
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~----r~~gl~~~  100 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVE----RSRGLDYD  100 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEE----EecCCCHH
Confidence            478999999999999999542111122221                 1123555554432110  000    01134443


Q ss_pred             HHHH--HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           66 RRAE--LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        66 ~~~~--~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ...+  .+...++.  .++++.+||+||+||++||+||+.          +|+++||||||++||+..+..+.+.|.+++
T Consensus       101 ~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~  180 (213)
T cd03279         101 QFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR  180 (213)
T ss_pred             HHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            3332  22333332  367889999999999999999985          578999999999999999999999999886


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      + .|.|||++||+++++..+||+++++++|.
T Consensus       181 ~-~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         181 T-ENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             h-CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence            4 48999999999999999999999999985

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.95  E-value=6.5e-29  Score=204.80  Aligned_cols=172  Identities=20%  Similarity=0.305  Sum_probs=139.9

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCC-CC-H
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAG-ID-P   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~-~~-~   64 (259)
                      .||++-++||||||||||        +-+|+|.+.|.+.        .+.-+|..|+..-...|.+..++.-... .. .
T Consensus        24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a  103 (248)
T COG4138          24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT  103 (248)
T ss_pred             cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence            589999999999999999        4799999999864        3445677766544445666665532211 11 1


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc-----CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-----PF--KVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~-----~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      ..++++...++++  +.+.+.+|||||.|||-+|...+.     ||  ++||+|||.++||...+..+..+|.++|. .|
T Consensus       104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G  182 (248)
T COG4138         104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QG  182 (248)
T ss_pred             HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CC
Confidence            3456677778775  356789999999999999988864     33  59999999999999999999999999997 59


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .+|||++||++...+-+|++++++.|++...|..+|+...
T Consensus       183 ~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~  222 (248)
T COG4138         183 LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP  222 (248)
T ss_pred             cEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence            9999999999999999999999999999999999998764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.8e-27  Score=196.80  Aligned_cols=146  Identities=20%  Similarity=0.281  Sum_probs=124.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-------ccEEEecccCCCCccCcHHHHHhc---cCC-C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-------REVAFAGFEVPIQMDVSAEKMIFG---VAG-I   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-------~~i~~v~~~~~~~~~lt~~~~~~~---~~~-~   62 (259)
                      .||++.|.||||||||||         +++|+|.+.|..+.       +..-|++.++.+-..+|+.|++..   +++ .
T Consensus        27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~  106 (209)
T COG4133          27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG  106 (209)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence            699999999999999999         59999999987542       345678888888888999876532   233 2


Q ss_pred             CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           63 DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                      +...+.++++.+|+.  .+.++++||-|||+||+|||-++..++++||||||++||..+...+-.++...+. .|..||+
T Consensus       107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVll  185 (209)
T COG4133         107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLL  185 (209)
T ss_pred             chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEE
Confidence            456678899999985  5789999999999999999999999999999999999999999999999998876 5888999


Q ss_pred             EeCChhHHh
Q 024989          141 ATHIFDGLE  149 (259)
Q Consensus       141 ~sH~~~~~~  149 (259)
                      +||..--+.
T Consensus       186 ttHq~l~~~  194 (209)
T COG4133         186 TTHQPLPIA  194 (209)
T ss_pred             ecCCccCCC
Confidence            999865443

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=9.7e-27  Score=203.48  Aligned_cols=155  Identities=20%  Similarity=0.310  Sum_probs=106.0

Q ss_pred             CCCcEEEEEcCCCCCccccCC-------------------------ce--------EEEEcCee-----------ccccE
Q 024989            2 VEPEMVKVLGRSAFHDTALTS-------------------------SG--------DLSYLGGE-----------WRREV   37 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~-------------------------~G--------~I~~~G~~-----------~~~~i   37 (259)
                      +.|++++|+||||||||||..                         +|        +|.+++.+           +++.+
T Consensus        21 ~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~i  100 (243)
T cd03272          21 FSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTI  100 (243)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEE
Confidence            468999999999999999931                         12        33333311           12335


Q ss_pred             EEecccCCCCc-cCcHHHHHh--ccCCCCHH------HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc----cC
Q 024989           38 AFAGFEVPIQM-DVSAEKMIF--GVAGIDPQ------RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL----KP  102 (259)
Q Consensus        38 ~~v~~~~~~~~-~lt~~~~~~--~~~~~~~~------~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~----~~  102 (259)
                      ++++++..++. .++..++..  ...+....      ...++.+.+++.  .+.++.+||||||||++||+||+    .+
T Consensus       101 g~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~  180 (243)
T cd03272         101 GLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP  180 (243)
T ss_pred             ECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence            66655555544 244444221  11111110      011233333332  35678999999999999999996    36


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989          103 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus       103 p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      |+++||||||+|||+.+++.+++.|+++. + +.+||++||+. ++..+||++++|.
T Consensus       181 ~~illlDEp~~~ld~~~~~~~~~~l~~~~-~-~~~ii~~~h~~-~~~~~~d~i~~l~  234 (243)
T cd03272         181 APFYLFDEIDAALDAQYRTAVANMIKELS-D-GAQFITTTFRP-ELLEVADKFYGVK  234 (243)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH-HHHhhCCEEEEEE
Confidence            89999999999999999999999999874 3 78888888885 5778999999885

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=3.2e-26  Score=236.21  Aligned_cols=163  Identities=22%  Similarity=0.323  Sum_probs=138.1

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHH-HhccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~-~~~~~~~~~~~~~~~l~   72 (259)
                      +|+.++|+|+-|||||+|+         .+|++.+.|.     ++|++|++.++.. |++++ ++|. ..++++.+++++
T Consensus       546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----iaYv~Q~pWI~ng-TvreNILFG~-~~d~~rY~~Vi~  618 (1381)
T KOG0054|consen  546 KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-----VAYVPQQPWIQNG-TVRENILFGS-PYDEERYDKVIK  618 (1381)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----EEEeccccHhhCC-cHHHhhhcCc-cccHHHHHHHHH
Confidence            7999999999999999993         7999999985     9999999888766 45554 5554 357788888888


Q ss_pred             HcCCCc-------------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           73 VLDIDL-------------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        73 ~~~l~~-------------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      ...|..             ..+--+||||||||++||||+-+++|++|||-|.+++|....+.+++..-...- +++|+|
T Consensus       619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~I  697 (1381)
T KOG0054|consen  619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVI  697 (1381)
T ss_pred             HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEE
Confidence            876631             124568999999999999999999999999999999999999887755544333 489999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++||.++.+.+ ||.|++|++|+|...|+.+|+.+
T Consensus       698 LVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  698 LVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             EEeCchhhhhh-CCEEEEecCCeEecccCHHHHHh
Confidence            99999998887 89999999999999999999985

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=2.4e-26  Score=237.18  Aligned_cols=170  Identities=17%  Similarity=0.226  Sum_probs=142.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||-++|+|+.|||||||         +.+|+|.+||.++        |++++.+||+|.+|... ++.++-.+...+.+
T Consensus      1165 p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT-vR~NLDPf~e~sD~ 1243 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT-VRFNLDPFDEYSDD 1243 (1381)
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc-cccccCcccccCHH
Confidence            689999999999999999         4899999999764        67899999999998764 45444333333445


Q ss_pred             HHHHHHHHcCCC---------cccc----CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID---------LSWR----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~---------~~~~----~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++-++|+..++.         ++..    -.++|-||||-++|||||+++.+||+|||.|+++|+.+-..+.+.|++.- 
T Consensus      1244 ~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F- 1322 (1381)
T KOG0054|consen 1244 EIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF- 1322 (1381)
T ss_pred             HHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-
Confidence            555666665541         2333    35799999999999999999999999999999999999999999999865 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                       .++|||.|-|.++.+.+ ||||+||++|++++.++|.++.++.
T Consensus      1323 -~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1323 -KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred             -cCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCC
Confidence             37999999999999999 8999999999999999999998753

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=2.2e-26  Score=202.87  Aligned_cols=154  Identities=18%  Similarity=0.303  Sum_probs=115.5

Q ss_pred             CCcEEEEEcCCCCCccccC---------C-ceEEEEcCe-ec----------cccEEEecccC---------CCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S-SGDLSYLGG-EW----------RREVAFAGFEV---------PIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~-~G~I~~~G~-~~----------~~~i~~v~~~~---------~~~~~lt~   52 (259)
                      .+.+++|+||||||||||.         + .|++.+.|. ++          ...+++++|++         .+.+.+++
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV  103 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV  103 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence            4789999999999999993         3 457777664 21          22577777763         22334554


Q ss_pred             HHHH-hc------cCC--CCHHHHHHHHHHcCCCc----------------------cccCCcCCHHHHHHHHHHHHHc-
Q 024989           53 EKMI-FG------VAG--IDPQRRAELIKVLDIDL----------------------SWRMHKVSDGQRRRVQICMGLL-  100 (259)
Q Consensus        53 ~~~~-~~------~~~--~~~~~~~~~l~~~~l~~----------------------~~~~~~LSgG~~qrv~ia~al~-  100 (259)
                      .+.+ .+      ..+  ...+++.++++.+++..                      +.++.+||+|||||++||+||+ 
T Consensus       104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence            4221 11      111  12456778889888752                      2568899999999999999998 


Q ss_pred             ---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989          101 ---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus       101 ---~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                         .+|+++||||||++||+..+..+++.|+++.  .|.|||++||+. ++.+.||+++-+.
T Consensus       184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~-~~~~~~d~v~~~~  242 (251)
T cd03273         184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKE-GMFNNANVLFRTR  242 (251)
T ss_pred             hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCH-HHHHhCCEEEEEE
Confidence               5789999999999999999999999999874  388999999995 5556799998765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.8e-27  Score=191.09  Aligned_cols=157  Identities=25%  Similarity=0.369  Sum_probs=126.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-c---------------cccEEEecccCCCCccCcHHHHHh
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-W---------------RREVAFAGFEVPIQMDVSAEKMIF   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-~---------------~~~i~~v~~~~~~~~~lt~~~~~~   57 (259)
                      .||.+++=||||+|||||         +|+|+|.+.-.. |               ++.+||+.|-....|..+..+...
T Consensus        36 aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVva  115 (235)
T COG4778          36 AGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVA  115 (235)
T ss_pred             CccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHH
Confidence            589999999999999999         599999886421 1               345899988665556555444332


Q ss_pred             c---cCCCCH----HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           58 G---VAGIDP----QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        58 ~---~~~~~~----~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                      .   -.+.+.    .++..++.+++++.   .-.+.++|||+||||.|||.++.+-++|+|||||+.||..+++.+.++|
T Consensus       116 ePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli  195 (235)
T COG4778         116 EPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI  195 (235)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHH
Confidence            1   123332    34567899999862   3468999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      .+. +..|.++|=|-||-+.=+.+|||++.+..
T Consensus       196 ~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         196 REA-KARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             HHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            985 45799999999999888899999987753

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=3.3e-26  Score=195.35  Aligned_cols=150  Identities=15%  Similarity=0.200  Sum_probs=106.9

Q ss_pred             CCcEEEEEcCCCCCccccC------CceEEEE--cCee---c------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTALT------SSGDLSY--LGGE---W------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~--~G~~---~------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      .+.+.+|+||||||||||.      ..|....  .|..   +      ...+.+.++...++..        .......+
T Consensus        20 ~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~   91 (198)
T cd03276          20 GPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--------PLCVLSQD   91 (198)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--------cCCHHHHH
Confidence            3457899999999999995      2233221  1211   0      1224444433222220        01111224


Q ss_pred             HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEE
Q 024989           66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE--RGATII  139 (259)
Q Consensus        66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~--~g~tii  139 (259)
                      .+.++++. .-..++++++||+|||||++||+|+    +.+|+++||||||+|||+..+..+.++|.+++.+  .+.|||
T Consensus        92 ~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~ii  170 (198)
T cd03276          92 MARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIF  170 (198)
T ss_pred             HHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            45566665 2224678999999999999999999    5899999999999999999999999999987654  246999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCe
Q 024989          140 YATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      ++||+++++..+ |+|.+|+.++
T Consensus       171 i~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         171 ITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             EECCcccccccc-cceeEEEecC
Confidence            999999999986 9999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=1.8e-27  Score=205.23  Aligned_cols=153  Identities=14%  Similarity=0.218  Sum_probs=112.3

Q ss_pred             CcEEEEEcCCCCCccccCCceEEEEcCee---cc-ccEEEecccCCCCccCcHHHHHh---cc--------CCCCHH--H
Q 024989            4 PEMVKVLGRSAFHDTALTSSGDLSYLGGE---WR-REVAFAGFEVPIQMDVSAEKMIF---GV--------AGIDPQ--R   66 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~~~G~I~~~G~~---~~-~~i~~v~~~~~~~~~lt~~~~~~---~~--------~~~~~~--~   66 (259)
                      .++++|+||||||||||.+.= ..++|.+   .+ ++++++++....++.+++.++..   ..        ++...+  .
T Consensus        25 ~~i~~ivGpNGaGKSTll~~i-~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  103 (212)
T cd03274          25 KSFSAIVGPNGSGKSNVIDSM-LFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNR  103 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHH-HHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCc
Confidence            479999999999999996420 0223432   12 45788887777777766554321   11        122111  1


Q ss_pred             ----HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           67 ----RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        67 ----~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                          ..++++.++++  .++++..||+|||||++||+|++.    +|++++|||||+|||+.++..+++.|+++.  .+.
T Consensus       104 ~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~  181 (212)
T cd03274         104 FLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNA  181 (212)
T ss_pred             eEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCC
Confidence                13455666664  356788999999999999999974    589999999999999999999999999874  367


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeC
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      |+|++||+ .++..+||++++|..
T Consensus       182 ~~iivs~~-~~~~~~~d~v~~~~~  204 (212)
T cd03274         182 QFIVISLR-NNMFELADRLVGIYK  204 (212)
T ss_pred             EEEEEECc-HHHHHhCCEEEEEEe
Confidence            89999999 467789999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.93  E-value=5.6e-26  Score=194.75  Aligned_cols=147  Identities=17%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             CcEEEEEcCCCCCccccCC------ceEEEEcC-------e-----eccccEEEecccCC-----CCccCcHHHHHhccC
Q 024989            4 PEMVKVLGRSAFHDTALTS------SGDLSYLG-------G-----EWRREVAFAGFEVP-----IQMDVSAEKMIFGVA   60 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~~------~G~I~~~G-------~-----~~~~~i~~v~~~~~-----~~~~lt~~~~~~~~~   60 (259)
                      +.+++|+||||||||||+.      .|...-.+       .     .....++++++...     ....+++.+.+..  
T Consensus        22 ~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~--   99 (204)
T cd03240          22 SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF--   99 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee--
Confidence            4599999999999999942      13322211       1     11234777776652     1112233332211  


Q ss_pred             CCCHHHHHHHHHHcCCCccccCCcCCHHHHHH------HHHHHHHccCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHh
Q 024989           61 GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRR------VQICMGLLKPFKVLLLDEITVDLDVLARA-DLLRFLRKECEE  133 (259)
Q Consensus        61 ~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qr------v~ia~al~~~p~lllLDEPt~gLD~~~~~-~~~~~l~~~~~~  133 (259)
                       .......+.+       ++++.+||+||+||      ++||+|++.+|+++||||||++||+..+. .+.++|.++.++
T Consensus       100 -~~~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~  171 (204)
T cd03240         100 -CHQGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ  171 (204)
T ss_pred             -echHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc
Confidence             1122222222       66789999999996      78999999999999999999999999999 999999988654


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      .|.|||++||+++.+. .||+++.|.+.
T Consensus       172 ~~~~iiiitH~~~~~~-~~d~i~~l~~~  198 (204)
T cd03240         172 KNFQLIVITHDEELVD-AADHIYRVEKD  198 (204)
T ss_pred             cCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence            4889999999998775 69999998653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.93  E-value=1.1e-24  Score=220.82  Aligned_cols=106  Identities=21%  Similarity=0.310  Sum_probs=95.8

Q ss_pred             HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      .++++.+++.   .++++.+|||||+||+.||++|+.+|   +++||||||+|||+..+..+++.|+++.+ .|.|||++
T Consensus       811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIii  889 (943)
T PRK00349        811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVI  889 (943)
T ss_pred             HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            4567777875   36788999999999999999999999   99999999999999999999999999864 59999999


Q ss_pred             eCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          142 THIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      ||+++++. .||+|++|      ++|++++.|+++++...
T Consensus       890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~  928 (943)
T PRK00349        890 EHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV  928 (943)
T ss_pred             ecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence            99999986 69999999      79999999999998754

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.92  E-value=1.4e-25  Score=179.09  Aligned_cols=105  Identities=27%  Similarity=0.417  Sum_probs=88.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      +||+++|+|+||||||||         +++|.|.++|.++        ++.++|++|+..++..+|+.++.      ..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~------~~~   83 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE------SDE   83 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH------HHH
T ss_pred             CCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc------ccc
Confidence            799999999999999999         4899999999764        35699999998888888887661      234


Q ss_pred             HHHHHHHHcCCC--cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 024989           66 RRAELIKVLDID--LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV  113 (259)
Q Consensus        66 ~~~~~l~~~~l~--~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~  113 (259)
                      ++.++++.+++.  .+    +++.+||+|||||++||+||+.+|+++|||||||
T Consensus        84 ~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   84 RIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            567788888763  23    3449999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.92  E-value=8.7e-25  Score=192.35  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHcCCCc------------------------cccCCcCCHHHHHHHHHHHHHccC----CcEEEEeCCCCC
Q 024989           63 DPQRRAELIKVLDIDL------------------------SWRMHKVSDGQRRRVQICMGLLKP----FKVLLLDEITVD  114 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~~------------------------~~~~~~LSgG~~qrv~ia~al~~~----p~lllLDEPt~g  114 (259)
                      +.+.++++++.+++..                        ++++.+||+|||||++||++++.+    |+++||||||+|
T Consensus       110 s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~  189 (247)
T cd03275         110 SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAA  189 (247)
T ss_pred             cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccccc
Confidence            4556677888887731                        123488999999999999999864    899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989          115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus       115 LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      ||+..+..+.+.|.++++ .|.|||++||+.+.+ .+||++++|.+
T Consensus       190 LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~-~~~d~i~~~~~  233 (247)
T cd03275         190 LDNTNVGKVASYIREQAG-PNFQFIVISLKEEFF-SKADALVGVYR  233 (247)
T ss_pred             CCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence            999999999999999865 489999999997765 67999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.91  E-value=4.6e-24  Score=225.21  Aligned_cols=104  Identities=20%  Similarity=0.296  Sum_probs=95.0

Q ss_pred             HHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHc---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           69 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLL---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        69 ~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~---~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      ++++.+++.   .++++.+|||||+||++||++|+   .+|++|||||||+|||+..++.++++|.++++ .|.|||++|
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIs  869 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIE  869 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            467778884   36789999999999999999997   69999999999999999999999999999875 599999999


Q ss_pred             CChhHHhccCCeEEEEe------CCeEEEecChhHHHH
Q 024989          143 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKE  174 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~------~G~i~~~g~~~~~~~  174 (259)
                      |+++++ .+||++++|.      +|++++.|+++++..
T Consensus       870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        870 HNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             CCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            999999 7899999996      799999999999875

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=2.1e-24  Score=199.46  Aligned_cols=151  Identities=21%  Similarity=0.318  Sum_probs=127.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCC--CC-HHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG--ID-PQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~--~~-~~~~~~~   70 (259)
                      .||+++++||||.||||+         +++|.      ...-+++|-||...-..+.|+++++.....  +. .--..++
T Consensus       366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~------~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei  439 (591)
T COG1245         366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS------EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEI  439 (591)
T ss_pred             cceEEEEECCCCcchHHHHHHHhccccCCCCC------CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhh
Confidence            689999999999999999         46665      333468899887665566788887753211  11 1223567


Q ss_pred             HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++-|+++  .++++.+||||+.|||+||.||..+++++|||||++.||...+..+.+.|+++..+.++|.+++.||+-.+
T Consensus       440 ~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~  519 (591)
T COG1245         440 VKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI  519 (591)
T ss_pred             cCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehh
Confidence            7878775  57899999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             hccCCeEEEEe
Q 024989          149 ENWPSHIVYVA  159 (259)
Q Consensus       149 ~~~~drv~~l~  159 (259)
                      ..++||+++..
T Consensus       520 dyvsDr~ivF~  530 (591)
T COG1245         520 DYVSDRLIVFE  530 (591)
T ss_pred             hhhhceEEEEe
Confidence            99999999875

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.91  E-value=4.8e-24  Score=215.97  Aligned_cols=103  Identities=20%  Similarity=0.297  Sum_probs=92.1

Q ss_pred             HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHcc---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLK---PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~---~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      .++++.+++.   .++++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..+++.|.++.+ .|.|||++
T Consensus       809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi  887 (924)
T TIGR00630       809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVI  887 (924)
T ss_pred             HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            3466667774   367889999999999999999997   5999999999999999999999999999864 59999999


Q ss_pred             eCChhHHhccCCeEEEE------eCCeEEEecChhHH
Q 024989          142 THIFDGLENWPSHIVYV------AHGKLQLAMPMDKV  172 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~  172 (259)
                      ||+++++. .||++++|      ++|++++.|+++++
T Consensus       888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       888 EHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             eCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999986 69999999      79999999998765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=4.2e-25  Score=206.39  Aligned_cols=168  Identities=20%  Similarity=0.181  Sum_probs=120.6

Q ss_pred             CCcEEEEEcCCCCCccccC---CceEEEEcCeeccccEEEeccc-CCCCccCcHHHHHhcc----CCCCHHHHH-HHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---SSGDLSYLGGEWRREVAFAGFE-VPIQMDVSAEKMIFGV----AGIDPQRRA-ELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---~~G~I~~~G~~~~~~i~~v~~~-~~~~~~lt~~~~~~~~----~~~~~~~~~-~~l~~   73 (259)
                      .|--++++|+||+|||||.   ..|+|.....+-.-.--+++.. ..+..++...+++..-    .+...+.+. ++|.-
T Consensus       105 ~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g  184 (582)
T KOG0062|consen  105 RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAG  184 (582)
T ss_pred             cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh
Confidence            4667899999999999994   4577766654210000122111 1112233333333221    111223333 37888


Q ss_pred             cCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989           74 LDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  150 (259)
Q Consensus        74 ~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~  150 (259)
                      +|+..   .+++++||||+|.|++|||||..+||+||||||||.||..+..++.+.|..    .+.|+|+||||..++..
T Consensus       185 lGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t----~~~T~liVSHDr~FLn~  260 (582)
T KOG0062|consen  185 LGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT----WKITSLIVSHDRNFLNT  260 (582)
T ss_pred             CCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh----CCceEEEEeccHHHHHH
Confidence            88862   568899999999999999999999999999999999999999988888864    45899999999999999


Q ss_pred             cCCeEEEEeCCeEEE-ecChhHHHH
Q 024989          151 WPSHIVYVAHGKLQL-AMPMDKVKE  174 (259)
Q Consensus       151 ~~drv~~l~~G~i~~-~g~~~~~~~  174 (259)
                      +|..|+.+++-++-. .|+.++...
T Consensus       261 V~tdIIH~~~~kL~~YkGN~~~Fvk  285 (582)
T KOG0062|consen  261 VCTDIIHLENLKLDYYKGNYSQFVK  285 (582)
T ss_pred             HHHHHHHHhhhhhhhhcCcHHHHHH
Confidence            999999998877743 577776654

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.90  E-value=3.3e-24  Score=181.73  Aligned_cols=178  Identities=17%  Similarity=0.266  Sum_probs=140.1

Q ss_pred             CCCCcEEEEEcCCCCCccccC-------------CceEEEEcCeec------------cccEEEecccCCCC--ccCcH-
Q 024989            1 MVEPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW------------RREVAFAGFEVPIQ--MDVSA-   52 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~------------~~~i~~v~~~~~~~--~~lt~-   52 (259)
                      |-|||+-+++|.||||||..+             +.-...++..++            .+.|++++|++.-.  +.-++ 
T Consensus        30 lnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG  109 (330)
T COG4170          30 LNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG  109 (330)
T ss_pred             eccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHH
Confidence            358999999999999999873             233333433321            12366778876542  22222 


Q ss_pred             HHHHhcc------------CCCCHHHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCC
Q 024989           53 EKMIFGV------------AGIDPQRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL  115 (259)
Q Consensus        53 ~~~~~~~------------~~~~~~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gL  115 (259)
                      .+++...            .++...++-+++..+|+..     ..++.+|--|+-|+|.||.|++.+|++||.||||+.+
T Consensus       110 ~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~  189 (330)
T COG4170         110 RQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM  189 (330)
T ss_pred             HHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCccc
Confidence            2333221            1233455678899999852     3478899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989          116 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  178 (259)
Q Consensus       116 D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~  178 (259)
                      +|.++.+++.+|..+++.+|+||+++|||+..+.++||++-||..|.-+++++.+++.+....
T Consensus       190 e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhH  252 (330)
T COG4170         190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHH  252 (330)
T ss_pred             CccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCC
Confidence            999999999999999988899999999999999999999999999999999999999876543

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=4.7e-24  Score=216.75  Aligned_cols=170  Identities=22%  Similarity=0.294  Sum_probs=139.5

Q ss_pred             CCCcEEEEEcCCCCCccccC-----------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH-h----ccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI-F----GVA   60 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~-~----~~~   60 (259)
                      .+|-.++|+|.||+|||||+           -+|+|.++|.+.     +|.+||+.|+....+.+||+|-+ +    +.+
T Consensus       815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp  894 (1391)
T KOG0065|consen  815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP  894 (1391)
T ss_pred             cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCC
Confidence            46779999999999999995           489999999864     46789998877767899998743 2    222


Q ss_pred             -CCCH----HHHHHHHHHcCCC--ccccC----CcCCHHHHHHHHHHHHHccCC-cEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           61 -GIDP----QRRAELIKVLDID--LSWRM----HKVSDGQRRRVQICMGLLKPF-KVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        61 -~~~~----~~~~~~l~~~~l~--~~~~~----~~LSgG~~qrv~ia~al~~~p-~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                       ..+.    +.++++++.+++.  .+.-+    ..||..||+|+.||--|+.+| -||+|||||+|||..+...++++++
T Consensus       895 ~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr  974 (1391)
T KOG0065|consen  895 KEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLR  974 (1391)
T ss_pred             CcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence             2222    3367899999986  34434    459999999999999999999 8999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChh-HHhccCCeEEEEe-CCeEEEecChhHH
Q 024989          129 KECEERGATIIYATHIFD-GLENWPSHIVYVA-HGKLQLAMPMDKV  172 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~-~~~~~~drv~~l~-~G~i~~~g~~~~~  172 (259)
                      +++. .|.||+.+-|... .+.+-.|++++|+ .|+.+..|+..+-
T Consensus       975 kla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen  975 KLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred             HHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence            9986 6999999999984 3555679999997 4789999988653

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.89  E-value=5e-23  Score=193.52  Aligned_cols=103  Identities=24%  Similarity=0.254  Sum_probs=88.3

Q ss_pred             HHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           69 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        69 ~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      .++..++..   .++++.+||||||+|++|||+|..+|++|||||||+|||+.++..+-+.|.++-  .+ +++++||+-
T Consensus       203 ~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~-~lVi~sh~Q  279 (614)
T KOG0927|consen  203 KILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RI-ILVIVSHSQ  279 (614)
T ss_pred             HHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--Cc-eEEEEecch
Confidence            445545543   367889999999999999999999999999999999999999999999887642  22 899999999


Q ss_pred             hHHhccCCeEEEEeCCe-EEEecChhHHHH
Q 024989          146 DGLENWPSHIVYVAHGK-LQLAMPMDKVKE  174 (259)
Q Consensus       146 ~~~~~~~drv~~l~~G~-i~~~g~~~~~~~  174 (259)
                      +++..+|++|+.+++++ +...|+.+....
T Consensus       280 Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~~  309 (614)
T KOG0927|consen  280 DFLNGVCTNIIHLDNKKLIYYEGNYDQYVK  309 (614)
T ss_pred             hhhhhHhhhhheecccceeeecCCHHHHhh
Confidence            99999999999999999 556888887654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.89  E-value=4e-23  Score=194.21  Aligned_cols=164  Identities=20%  Similarity=0.232  Sum_probs=124.1

Q ss_pred             CcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCC--CccCcHHHHHhc-cCC-CCHHHHHHH
Q 024989            4 PEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPI--QMDVSAEKMIFG-VAG-IDPQRRAEL   70 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~--~~~lt~~~~~~~-~~~-~~~~~~~~~   70 (259)
                      ++.++++||||+|||||         ++.|.|.-.-+   ..+++..|....  ..+.+.-+++.. +.. ...+.+..+
T Consensus       416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~i  492 (614)
T KOG0927|consen  416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---NKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI  492 (614)
T ss_pred             ccceeEecCCCCchhhhHHHHhhcccccccccccccc---ccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHH
Confidence            56789999999999999         35665543322   123333333222  223333444432 222 334667889


Q ss_pred             HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +.+||+.   ...++.+||+|||.||.+|+.++..|.+|||||||+|||..+...+-+.|.++    ..++|++|||+-.
T Consensus       493 lgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrl  568 (614)
T KOG0927|consen  493 LGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRL  568 (614)
T ss_pred             HHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhH
Confidence            9999996   35688999999999999999999999999999999999999999999988764    3489999999999


Q ss_pred             HhccCCeEEEEeCCeEEE-ecChhHHHH
Q 024989          148 LENWPSHIVYVAHGKLQL-AMPMDKVKE  174 (259)
Q Consensus       148 ~~~~~drv~~l~~G~i~~-~g~~~~~~~  174 (259)
                      +.+++++|++..+|.+.. .|+......
T Consensus       569 I~qVaeEi~~c~~~~~~~~~G~i~~yk~  596 (614)
T KOG0927|consen  569 ISQVAEEIWVCENGTVTKWDGDIEIYKE  596 (614)
T ss_pred             HHHHHHHhHhhccCceeecCccHHHHHH
Confidence            999999999999887754 677766544

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.88  E-value=2e-23  Score=190.28  Aligned_cols=157  Identities=22%  Similarity=0.294  Sum_probs=124.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------ccEEEecccCCCCccCcHHHHHhccCC-CCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------REVAFAGFEVPIQMDVSAEKMIFGVAG-IDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------~~i~~v~~~~~~~~~lt~~~~~~~~~~-~~~   64 (259)
                      +||+|.|+|.||||||||         |++|+|.++|+++.        +-++-++.+..+|+.+      .+..+ .++
T Consensus       348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l------l~~e~~as~  421 (546)
T COG4615         348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL------LGPEGKASP  421 (546)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh------hCCccCCCh
Confidence            699999999999999999         69999999998652        1122233332332221      22223 356


Q ss_pred             HHHHHHHHHcCCC-----cccc--CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           65 QRRAELIKVLDID-----LSWR--MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        65 ~~~~~~l~~~~l~-----~~~~--~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      +.++.+++++.+.     .+..  .-+||.|||+|+++.-|++-+-++++|||=.+..||..|+.+++.+--+.++.|+|
T Consensus       422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT  501 (546)
T COG4615         422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT  501 (546)
T ss_pred             HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence            7788888888773     1222  45899999999999999999999999999999999999999999888877888999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      |+.||||-. -...+||++.+++|++++.
T Consensus       502 I~aIsHDd~-YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         502 IFAISHDDH-YFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             EEEEecCch-hhhhHHHHHHHhcCceeec
Confidence            999999955 4556999999999999874

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=3.6e-22  Score=186.89  Aligned_cols=159  Identities=16%  Similarity=0.180  Sum_probs=126.0

Q ss_pred             EEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHH--HHH-hccCCCCHHHHHHHHHH
Q 024989            6 MVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE--KMI-FGVAGIDPQRRAELIKV   73 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~--~~~-~~~~~~~~~~~~~~l~~   73 (259)
                      -.+++|+||+||||+.         ..|.+.+.+   +.+++|..|.-.-+.++.+.  ++. ..++|..++.+++-+..
T Consensus       392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~  468 (582)
T KOG0062|consen  392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS  468 (582)
T ss_pred             hhheeccCchhHHHHHHHHhccCCcccceeeecc---cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence            3578999999999992         455554443   46788877754444444333  233 23456778889999999


Q ss_pred             cCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989           74 LDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  150 (259)
Q Consensus        74 ~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~  150 (259)
                      ||++   ..+.+.+||||||-||++|.+...+|-+|+||||||.||..+...+-+.|+.+    +..||+||||.+++..
T Consensus       469 ~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~  544 (582)
T KOG0062|consen  469 FGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISS  544 (582)
T ss_pred             cCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhh
Confidence            9996   24568999999999999999999999999999999999999999988888765    3479999999999999


Q ss_pred             cCCeEEEEeCCeEEE-ecChhH
Q 024989          151 WPSHIVYVAHGKLQL-AMPMDK  171 (259)
Q Consensus       151 ~~drv~~l~~G~i~~-~g~~~~  171 (259)
                      +|+.+|+.++|++.. .|...+
T Consensus       545 ~c~E~Wvve~g~vt~ieg~~~~  566 (582)
T KOG0062|consen  545 LCKELWVVEDGKVTPIEGGIDK  566 (582)
T ss_pred             cCceeEEEcCCcEEeeeccHHH
Confidence            999999999999976 344433

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.87  E-value=8.4e-22  Score=184.00  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=142.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccC---CCCccCcHHHHH-hcc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEV---PIQMDVSAEKMI-FGV   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~---~~~~~lt~~~~~-~~~   59 (259)
                      +||+++|.|-.|-|-+-|         +.+|+|.++|++.          ...++|+|.+.   .+.+.+++.+++ ...
T Consensus       283 ~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~  362 (501)
T COG3845         283 AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR  362 (501)
T ss_pred             cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhh
Confidence            699999999999999988         3579999999874          13589999765   355677776543 221


Q ss_pred             --------CC-CCHH----HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           60 --------AG-IDPQ----RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        60 --------~~-~~~~----~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                              .+ .++.    ...++++.|++.   ...++.+||||++||+-+||-|..+|++||+-.||.|||..+.+.+
T Consensus       363 ~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I  442 (501)
T COG3845         363 HDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI  442 (501)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHH
Confidence                    11 2332    345789999884   4567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      .+.|.+..+ .|++|+++|-|++++..+||||.+|.+|+++...++++..
T Consensus       443 ~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~t  491 (501)
T COG3845         443 HERLLELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEAT  491 (501)
T ss_pred             HHHHHHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccCC
Confidence            999999865 6999999999999999999999999999999988887643

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.87  E-value=6.8e-22  Score=170.57  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             cccCCcCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCChhHHhccCC
Q 024989           79 SWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG-ATIIYATHIFDGLENWPS  153 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g-~tiii~sH~~~~~~~~~d  153 (259)
                      +..+.+||+||||++.++++|    +.+|+++|+||||+|||+..+..+++.|.+..++.| .|+|++||++.++..+||
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~  200 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE  200 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence            446789999999998877554    589999999999999999999999999999865425 589999999988888887


Q ss_pred             --eEEEEeCCeE
Q 024989          154 --HIVYVAHGKL  163 (259)
Q Consensus       154 --rv~~l~~G~i  163 (259)
                        +|++|.+|+-
T Consensus       201 ~~~v~~l~~g~~  212 (213)
T cd03277         201 KMTVLCVYNGPH  212 (213)
T ss_pred             ceEEEEEecCcc
Confidence              6888898874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.84  E-value=5.1e-21  Score=160.80  Aligned_cols=74  Identities=20%  Similarity=0.278  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989           85 VSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus        85 LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      ||+||+||++||++++    .+|+++|+|||+++||+..+..+.+.|.++.+ .|.|+|++||+.+.+. .+|+++.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    69999999999999999999999999998865 4899999999998775 7999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.84  E-value=1.5e-21  Score=166.58  Aligned_cols=85  Identities=24%  Similarity=0.294  Sum_probs=74.3

Q ss_pred             cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      .+...++|+||+|++.|++++ .+|+++|+|||++|+|+..+..++ .+++++. +.|.|+|++||+ .++..+||+++.
T Consensus        86 ~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~-~~l~~~~d~~~~  162 (200)
T cd03280          86 EQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL-ERGALVIATTHY-GELKAYAYKREG  162 (200)
T ss_pred             hcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCH-HHHHHHHhcCCC
Confidence            456789999999999999885 899999999999999999999986 4677665 458999999998 567789999999


Q ss_pred             EeCCeEEEe
Q 024989          158 VAHGKLQLA  166 (259)
Q Consensus       158 l~~G~i~~~  166 (259)
                      |++|++..+
T Consensus       163 l~~g~l~~~  171 (200)
T cd03280         163 VENASMEFD  171 (200)
T ss_pred             eEEEEEEEe
Confidence            999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.4e-20  Score=173.65  Aligned_cols=160  Identities=15%  Similarity=0.190  Sum_probs=120.8

Q ss_pred             EEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCC--CCccCcHHHHHhccCCCCHHHHHHHHHHc
Q 024989            6 MVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVAGIDPQRRAELIKVL   74 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~--~~~~lt~~~~~~~~~~~~~~~~~~~l~~~   74 (259)
                      -++|+||||.|||||+         +.|+.+-+   .+-+|||..|...  +...-|.-+++.....++.+.+...|-.|
T Consensus       615 RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f  691 (807)
T KOG0066|consen  615 RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---HRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF  691 (807)
T ss_pred             eeEEECCCCccHHHHHHHHhcCCCCCcchhhcc---ceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence            5899999999999993         44443222   1235888766532  33344455666544455667778888899


Q ss_pred             CCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhcc
Q 024989           75 DIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW  151 (259)
Q Consensus        75 ~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~  151 (259)
                      |+..   .-++..|||||+-||++|-.-+..|++|||||||++||+.+...+.+.|.++    ...|||+|||-..+.+.
T Consensus       692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~eT  767 (807)
T KOG0066|consen  692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVET  767 (807)
T ss_pred             hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeeec
Confidence            9853   2367899999999999999999999999999999999999999999998875    34799999999888887


Q ss_pred             CCeEEEEeCCeEEE-ecChhHH
Q 024989          152 PSHIVYVAHGKLQL-AMPMDKV  172 (259)
Q Consensus       152 ~drv~~l~~G~i~~-~g~~~~~  172 (259)
                      -..+||+.+-.|-. +|+-++.
T Consensus       768 ~C~LwVvE~Q~i~eIdGdFeDY  789 (807)
T KOG0066|consen  768 DCNLWVVENQGIDEIDGDFEDY  789 (807)
T ss_pred             CceEEEEccCChhhccccHHHH
Confidence            77888888765533 4555444

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.83  E-value=2.6e-20  Score=188.90  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=92.8

Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+..+++.   +++++.+|||||+|||.||++|+.+|  +++||||||+|||+..+..++++|+++.+ .|.|||+|+|+
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd  548 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHD  548 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence            34556664   46789999999999999999999986  89999999999999999999999999865 59999999999


Q ss_pred             hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989          145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE  174 (259)
Q Consensus       145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~  174 (259)
                      ++++. +||+|++|      ++|+|++.|+++++..
T Consensus       549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~  583 (924)
T TIGR00630       549 EETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA  583 (924)
T ss_pred             HHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence            99986 89999999      8999999999988753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=2.4e-20  Score=189.47  Aligned_cols=103  Identities=19%  Similarity=0.288  Sum_probs=93.9

Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +++.+|+.   +++++.+|||||+|||.||++|+.+|  +++||||||+|||+..+..++++|+++.+ .|.|||+|+|+
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~  550 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHD  550 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            46667775   47889999999999999999999997  99999999999999999999999999864 69999999999


Q ss_pred             hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989          145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE  174 (259)
Q Consensus       145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~  174 (259)
                      ++++. .||+|++|      ++|+++..|+++++..
T Consensus       551 ~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~  585 (943)
T PRK00349        551 EDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK  585 (943)
T ss_pred             HHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence            99987 59999999      9999999999998854

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.83  E-value=5.1e-20  Score=177.55  Aligned_cols=150  Identities=22%  Similarity=0.238  Sum_probs=116.1

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC--CCCHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~~~~~~~~~~   70 (259)
                      .||.+.|.|+||||||||.         -+|.|..-.   ...+-|+||.|.+... |.++.+. ...  ..+.++..++
T Consensus       418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~v  493 (604)
T COG4178         418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---DSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAV  493 (604)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC---CCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHH
Confidence            6999999999999999993         467776541   2347899988655444 6666553 221  2566778888


Q ss_pred             HHHcCCC-----cc---ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           71 IKVLDID-----LS---WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        71 l~~~~l~-----~~---~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      |..++|+     ++   +--..||+||||||++||.|+++|++++|||-|++||+.+...+++.+++.+  .+.|||-|+
T Consensus       494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~  571 (604)
T COG4178         494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVG  571 (604)
T ss_pred             HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEec
Confidence            9888884     11   1125799999999999999999999999999999999999999999998754  589999999


Q ss_pred             CChhHHhccCCeEEEEe
Q 024989          143 HIFDGLENWPSHIVYVA  159 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~  159 (259)
                      |... +..+.++.+-+.
T Consensus       572 Hr~t-l~~~h~~~l~l~  587 (604)
T COG4178         572 HRPT-LWNFHSRQLELL  587 (604)
T ss_pred             cchh-hHHHHhhheeec
Confidence            9865 555666655443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.82  E-value=1.3e-20  Score=174.57  Aligned_cols=93  Identities=25%  Similarity=0.385  Sum_probs=86.4

Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+++++.++|.  .++.+.+||||+-||++||.+++++++++++||||+-||...+-...+.|+++++. +++||++.||
T Consensus       194 ~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHD  272 (591)
T COG1245         194 FDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHD  272 (591)
T ss_pred             HHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEech
Confidence            56788888885  58889999999999999999999999999999999999999999999999999864 8999999999


Q ss_pred             hhHHhccCCeEEEEeC
Q 024989          145 FDGLENWPSHIVYVAH  160 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~  160 (259)
                      +..+.-++|-|.++..
T Consensus       273 LavLD~lsD~vhI~YG  288 (591)
T COG1245         273 LAVLDYLSDFVHILYG  288 (591)
T ss_pred             HHHHHHhhheeEEEec
Confidence            9999999999988864

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.81  E-value=8.6e-20  Score=150.80  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989           84 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      +||+||+||+.||++|+.    +|+++|+|||++|+|+..+..+.+.+.++..+ |.++|++||+.+.+. .+|+++.|.
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence            499999999999999986    78999999999999999999999999988765 899999999999876 589999986


Q ss_pred             C
Q 024989          160 H  160 (259)
Q Consensus       160 ~  160 (259)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            4

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.81  E-value=6e-19  Score=172.54  Aligned_cols=104  Identities=22%  Similarity=0.315  Sum_probs=91.8

Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      .|..+||.   +.++..+|||||.|||-||.-|....   -++||||||+||-+.-.+.+++.|.++.. .|.|||+|.|
T Consensus       805 tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEH  883 (935)
T COG0178         805 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEH  883 (935)
T ss_pred             HHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence            34445664   56788999999999999999999887   89999999999999999999999999986 6999999999


Q ss_pred             ChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          144 IFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       144 ~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      +|+.+. .||+|+-|      ..|+|++.|+|+++...
T Consensus       884 NLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~  920 (935)
T COG0178         884 NLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKV  920 (935)
T ss_pred             ccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence            999665 59999988      56899999999999763

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.80  E-value=6.8e-19  Score=157.38  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=69.1

Q ss_pred             CcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989           83 HKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      ..|||||+||++||++++.    +|+++||||||++||+..+..+.+.|.+++  .+.|+|++||+++. ..+||++++|
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~--~~~tii~isH~~~~-~~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS--RSHQVLCITHLPQV-AAMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEechHHH-HHhcCcEEEE
Confidence            3599999999999987654    999999999999999999999999999875  37899999999985 5689999999


Q ss_pred             eCCeE
Q 024989          159 AHGKL  163 (259)
Q Consensus       159 ~~G~i  163 (259)
                      .+|..
T Consensus       246 ~~~~~  250 (276)
T cd03241         246 EKEVE  250 (276)
T ss_pred             EEecC
Confidence            88643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.79  E-value=3.2e-20  Score=161.13  Aligned_cols=140  Identities=11%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             CCcEEEEEcCCCCCccccCC-ceEEEEcCeeccccEE-EecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCccc
Q 024989            3 EPEMVKVLGRSAFHDTALTS-SGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW   80 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~-~G~I~~~G~~~~~~i~-~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~   80 (259)
                      +++++.|+||||+|||||.. -|.+.+     ..++| |+|.....   +              ...++++..+++. +.
T Consensus        29 ~~~~~~l~G~n~~GKstll~~i~~~~~-----la~~g~~vpa~~~~---~--------------~~~~~il~~~~l~-d~   85 (222)
T cd03285          29 KSRFLIITGPNMGGKSTYIRQIGVIVL-----MAQIGCFVPCDSAD---I--------------PIVDCILARVGAS-DS   85 (222)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHH-----HHHhCCCcCcccEE---E--------------eccceeEeeeccc-cc
Confidence            67899999999999999752 221111     11222 33322110   0              0123455556554 33


Q ss_pred             cCCcCCHHHHHHHHHHHHH--ccCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989           81 RMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  155 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al--~~~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv  155 (259)
                      ....+|.|++|++.+++++  +.+|+++|||||   |+++|+.+...  ..++.+.++.|.++|++||+ .++.++||++
T Consensus        86 ~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~-~el~~~~~~~  162 (222)
T cd03285          86 QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF-HELTALADEV  162 (222)
T ss_pred             hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech-HHHHHHhhcC
Confidence            4678999999999999999  899999999999   99999988854  34444443358899999996 7788899999


Q ss_pred             EEEeCCeEEEecC
Q 024989          156 VYVAHGKLQLAMP  168 (259)
Q Consensus       156 ~~l~~G~i~~~g~  168 (259)
                      ..+++|++...++
T Consensus       163 ~~i~~g~~~~~~~  175 (222)
T cd03285         163 PNVKNLHVTALTD  175 (222)
T ss_pred             CCeEEEEEEEEEe
Confidence            9999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.78  E-value=8.5e-19  Score=185.66  Aligned_cols=102  Identities=16%  Similarity=0.255  Sum_probs=91.5

Q ss_pred             HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      +..+++.   +++.+.+|||||+|||.||+||+.+|  +++||||||+|||+..+..++++|+++.+ .|.|||+||||+
T Consensus       460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeHd~  538 (1809)
T PRK00635        460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEHDE  538 (1809)
T ss_pred             HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH
Confidence            4456665   36788999999999999999999999  89999999999999999999999999875 599999999999


Q ss_pred             hHHhccCCeEEEEe------CCeEEEecChhHHHH
Q 024989          146 DGLENWPSHIVYVA------HGKLQLAMPMDKVKE  174 (259)
Q Consensus       146 ~~~~~~~drv~~l~------~G~i~~~g~~~~~~~  174 (259)
                      + +.++||+|++|.      +|++++.|+++++..
T Consensus       539 ~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~  572 (1809)
T PRK00635        539 Q-MISLADRIIDIGPGAGIFGGEVLFNGSPREFLA  572 (1809)
T ss_pred             H-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence            9 568899999996      789999999988753

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=9.4e-19  Score=178.50  Aligned_cols=172  Identities=25%  Similarity=0.336  Sum_probs=144.4

Q ss_pred             CCcEEEEEcCCCCCccccC------------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH---hccC--
Q 024989            3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI---FGVA--   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~---~~~~--   60 (259)
                      +||++.++||.|||||||.            ..|+|.++|.+.     ++.++|.+|+...++.+|+++.+   ....  
T Consensus       140 pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~  219 (1391)
T KOG0065|consen  140 PGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGP  219 (1391)
T ss_pred             CCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCC
Confidence            6899999999999999993            478999999864     35689999998889999998643   2211  


Q ss_pred             -----CCCHHH-----HHHHHHHcCCC--c-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989           61 -----GIDPQR-----RAELIKVLDID--L-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  123 (259)
Q Consensus        61 -----~~~~~~-----~~~~l~~~~l~--~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~  123 (259)
                           ..++.+     .+.+++.+|++  .     +...+..|||||+||++|-+++.+++++.+||+|+|||..+.-++
T Consensus       220 ~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~i  299 (1391)
T KOG0065|consen  220 GSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQI  299 (1391)
T ss_pred             ccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHH
Confidence                 122222     34688999985  2     345678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          124 LRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .+.|+++++..+.|.+++-|.. +++..+.|.|.+|.+|+++..|+.++...
T Consensus       300 ik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~  351 (1391)
T KOG0065|consen  300 IKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP  351 (1391)
T ss_pred             HHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence            9999999887788888887776 56888899999999999999999998765

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.75  E-value=4.2e-19  Score=151.62  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=71.1

Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      .....+|.+++| +..+.+++.+|+++||||||+|+|+..+..+.. +++.+. +.+.++|++||+.+.+. .|+++..+
T Consensus        87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l  163 (202)
T cd03243          87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFHELAD-LPEQVPGV  163 (202)
T ss_pred             CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChHHHHH-HhhcCCCe
Confidence            345678877776 666678889999999999999999998887754 555554 46899999999987665 67898899


Q ss_pred             eCCeEEEecChhH
Q 024989          159 AHGKLQLAMPMDK  171 (259)
Q Consensus       159 ~~G~i~~~g~~~~  171 (259)
                      ..+++...++..+
T Consensus       164 ~~~~~~~~~~~~~  176 (202)
T cd03243         164 KNLHMEELITTGG  176 (202)
T ss_pred             EEEEEEEEecCCe
Confidence            9999988776533

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.74  E-value=2.6e-17  Score=156.23  Aligned_cols=153  Identities=17%  Similarity=0.201  Sum_probs=113.1

Q ss_pred             CCCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHH-HHHhcc-------CCCCH
Q 024989            2 VEPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV-------AGIDP   64 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~-~~~~~~-------~~~~~   64 (259)
                      ..|..+.|+||||||||+|.         .+|++.--...-.+.+-|+||.|..... |.+ ++++..       ...+.
T Consensus       459 ~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d  537 (659)
T KOG0060|consen  459 PSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASD  537 (659)
T ss_pred             cCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc-chhheeeccCccccccccCCCH
Confidence            46899999999999999992         7888877655444668999998644333 444 344431       12344


Q ss_pred             HHHHHHHHHcCCC--------ccc-----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID--------LSW-----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~--------~~~-----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.+.|+.+++.        .+.     -...||+|||||+++||.+.++|++-||||-|+++|......+++.++   
T Consensus       538 ~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r---  614 (659)
T KOG0060|consen  538 EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR---  614 (659)
T ss_pred             HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---
Confidence            5666666665542        111     135799999999999999999999999999999999977776666654   


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                       +.|+|.|-|+|.-.. .++=|.++-|+.
T Consensus       615 -~~giT~iSVgHRkSL-~kfHd~~L~~~g  641 (659)
T KOG0060|consen  615 -EMGITFISVGHRKSL-WKFHDYVLRMDG  641 (659)
T ss_pred             -HcCCeEEEeccHHHH-HhhhhEEEEecC
Confidence             469999999999774 456677877764

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.73  E-value=4.2e-17  Score=149.97  Aligned_cols=159  Identities=25%  Similarity=0.334  Sum_probs=122.9

Q ss_pred             CCcEEEEEcCCCCCcccc-----------------CCceEEEEcCeeccccEEEecccC-CCCccCcHHHHHhccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------------TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------------~~~G~I~~~G~~~~~~i~~v~~~~-~~~~~lt~~~~~~~~~~~~~   64 (259)
                      .||+++|+|+||+||||+                 +|||.|.+--...   .+.+|.+. +-+...|+.+.+..-.+ +.
T Consensus       408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~---~a~iPge~Ep~f~~~tilehl~s~tG-D~  483 (593)
T COG2401         408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---SALIPGEYEPEFGEVTILEHLRSKTG-DL  483 (593)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch---hhccCcccccccCchhHHHHHhhccC-ch
Confidence            599999999999999999                 3677666543221   12333221 11223344343332222 33


Q ss_pred             HHHHHHHHHcCCC---c-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           65 QRRAELIKVLDID---L-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        65 ~~~~~~l~~~~l~---~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                      ....+++...|+.   + .+++++||-|||.|+.||++++..|.+++.||-.+.||+.+...+..-|.+++++.|.|+++
T Consensus       484 ~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTliv  563 (593)
T COG2401         484 NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV  563 (593)
T ss_pred             hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            3467889999985   2 45789999999999999999999999999999999999999999999999999989999999


Q ss_pred             EeCChhHHhcc-CCeEEEEeCCeEEE
Q 024989          141 ATHIFDGLENW-PSHIVYVAHGKLQL  165 (259)
Q Consensus       141 ~sH~~~~~~~~-~drv~~l~~G~i~~  165 (259)
                      +||..+....+ -|.++.+.-|....
T Consensus       564 vThrpEv~~AL~PD~li~vgYg~v~~  589 (593)
T COG2401         564 VTHRPEVGNALRPDTLILVGYGKVPV  589 (593)
T ss_pred             EecCHHHHhccCCceeEEeecccccc
Confidence            99999999998 78888888777643

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=7.6e-19  Score=162.33  Aligned_cols=101  Identities=25%  Similarity=0.237  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      ++.++|.-+|++   .+++...+|||+|.||+|||||..+|-+|.|||||++||..+..++-++|.-+    .+|++|+|
T Consensus       391 rARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVS  466 (807)
T KOG0066|consen  391 RARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVS  466 (807)
T ss_pred             HHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEe
Confidence            456788888885   35778899999999999999999999999999999999999999888888653    46999999


Q ss_pred             CChhHHhccCCeEEEEeCCeEEE-ecChh
Q 024989          143 HIFDGLENWPSHIVYVAHGKLQL-AMPMD  170 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~G~i~~-~g~~~  170 (259)
                      ||-.++..+|+.|+.|++-++.. .|+..
T Consensus       467 HDQgFLD~VCtdIIHLD~qkLhyYrGNY~  495 (807)
T KOG0066|consen  467 HDQGFLDSVCTDIIHLDNQKLHYYRGNYT  495 (807)
T ss_pred             cccchHHHHHHHHhhhhhhhhhhhcchHH
Confidence            99999999999999999988865 35544

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.72  E-value=3.5e-17  Score=145.87  Aligned_cols=77  Identities=26%  Similarity=0.353  Sum_probs=67.1

Q ss_pred             CCcCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           82 MHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      ...+|+||||+++||++|+         .+|+++||||||++||+..+..+++.+.++    + .+++++|+.+.+..+|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence            4568999999999999985         799999999999999999999999998753    2 4777888888888888


Q ss_pred             ---CeEEEEeCCeE
Q 024989          153 ---SHIVYVAHGKL  163 (259)
Q Consensus       153 ---drv~~l~~G~i  163 (259)
                         ++++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.72  E-value=8.2e-18  Score=143.71  Aligned_cols=130  Identities=15%  Similarity=0.104  Sum_probs=83.8

Q ss_pred             CCcEEEEEcCCCCCccccCC--ceEEE--EcCeeccccEEEecccCCCCccCcHHHHH-hccCCC--CHHHHHHHHHHcC
Q 024989            3 EPEMVKVLGRSAFHDTALTS--SGDLS--YLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGI--DPQRRAELIKVLD   75 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~--~G~I~--~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~--~~~~~~~~l~~~~   75 (259)
                      .|++++|+||||||||||..  .|.+.  ..|..+... .+++|...++..+++.+.+ .+....  ..+++.++++.++
T Consensus        24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~-~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~  102 (199)
T cd03283          24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCAS-SFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAK  102 (199)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecC-ccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhcc
Confidence            47899999999999999952  33332  245443211 2333433455666655433 222110  1122344444443


Q ss_pred             CCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhcc--C
Q 024989           76 IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENW--P  152 (259)
Q Consensus        76 l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~--~  152 (259)
                      .                        .+|+++|+||||+|+|+..+..+. .+++++.+ .|.|+|++||+++++..+  .
T Consensus       103 ~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~~~~  157 (199)
T cd03283         103 K------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLLDLD  157 (199)
T ss_pred             C------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhhhcC
Confidence            1                        699999999999999999998764 56777754 589999999999998776  4


Q ss_pred             CeEEEE
Q 024989          153 SHIVYV  158 (259)
Q Consensus       153 drv~~l  158 (259)
                      ++|-.+
T Consensus       158 ~~v~~~  163 (199)
T cd03283         158 SAVRNY  163 (199)
T ss_pred             CCeEEE
Confidence            444443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.64  E-value=9.9e-17  Score=137.58  Aligned_cols=128  Identities=11%  Similarity=0.081  Sum_probs=85.6

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEE-ecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC--cc
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF-AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LS   79 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~-v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~   79 (259)
                      +|+++.|+||||+||||+...    +.+..+..++|+ +   +..+..++..              ++++..++..  ..
T Consensus        28 ~~~~~~l~G~n~~GKstll~~----i~~~~~la~~G~~v---pa~~~~l~~~--------------d~I~~~~~~~d~~~   86 (204)
T cd03282          28 SSRFHIITGPNMSGKSTYLKQ----IALLAIMAQIGCFV---PAEYATLPIF--------------NRLLSRLSNDDSME   86 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHH----HHHHHHHHHcCCCc---chhhcCccCh--------------hheeEecCCccccc
Confidence            469999999999999998532    111111222332 1   1122222222              2233333332  34


Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                      +..+++|+|++|. ..+.+++.+|+++|||||++|+|+.....+ +.+++.+.+ .|.++|++||+.+.+..+++
T Consensus        87 ~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282          87 RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence            5678999999975 556668899999999999999999776654 456666654 59999999999998887664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.64  E-value=3e-17  Score=138.47  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      .+..++||+|++|...++. .+.+|+++|+|||++|+|+.....+. .+++.+.++.|.++|++||+++ +.++|++.--
T Consensus        56 ~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~~  133 (185)
T smart00534       56 AQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHPG  133 (185)
T ss_pred             hccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCcc
Confidence            4567889998887444333 24599999999999999999877764 5566555424889999999995 6677875333


Q ss_pred             EeCCeE
Q 024989          158 VAHGKL  163 (259)
Q Consensus       158 l~~G~i  163 (259)
                      ++++.+
T Consensus       134 v~~~~~  139 (185)
T smart00534      134 VRNLHM  139 (185)
T ss_pred             ceEEEE
Confidence            444443

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.59  E-value=1.8e-15  Score=142.61  Aligned_cols=146  Identities=15%  Similarity=0.263  Sum_probs=98.9

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHH-HHHhc-------cCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFG-------VAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~-~~~~~-------~~~~~~~   65 (259)
                      +|-.+.|+||||||||+|.         ..|...+   +....+-|+||.|..- .-|.+ +.++.       ..+...+
T Consensus       507 ~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~  582 (728)
T KOG0064|consen  507 PGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ  582 (728)
T ss_pred             CCceEEEECCCCccHHHHHHHHhccCcccCCeeec---CCCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH
Confidence            5778999999999999993         3333322   2345588898875321 11111 22221       1234445


Q ss_pred             HHHHHHHHcCCC------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           66 RRAELIKVLDID------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        66 ~~~~~l~~~~l~------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      +...++..+.+.            .+|+ .-||||+|||+++||.+.|+|+..+|||-|++.-+.....+++..+    .
T Consensus       583 dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~  657 (728)
T KOG0064|consen  583 DLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----D  657 (728)
T ss_pred             HHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----h
Confidence            555666655442            1222 4699999999999999999999999999999999877766666554    4


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEE
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      .|.+.|-+||....... -.+++-.
T Consensus       658 ~gi~llsithrpslwk~-h~~ll~~  681 (728)
T KOG0064|consen  658 AGISLLSITHRPSLWKY-HTHLLEF  681 (728)
T ss_pred             cCceEEEeecCccHHHH-HHHHHhc
Confidence            69999999999876543 3444433

>TIGR00618 sbcc exonuclease SbcC

Probab=99.59  E-value=4.4e-15  Score=154.17  Aligned_cols=82  Identities=18%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             cccCCcCCHHHHHHHHHHHHHcc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      .+++.+|||||++||+||+||+.          +|++|||||||+|||+.+...+++.|.++.. .|.+|+||||++++.
T Consensus       945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618       945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence            45789999999999999999985          7999999999999999999999999999875 699999999999999


Q ss_pred             hccCCeEEEEeCC
Q 024989          149 ENWPSHIVYVAHG  161 (259)
Q Consensus       149 ~~~~drv~~l~~G  161 (259)
                      ..+||+|.|++.|
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            9999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00634 recN DNA repair protein RecN

Probab=99.56  E-value=1.2e-14  Score=141.90  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             CcCCHHHHHHHHHHHHHccC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989           83 HKVSDGQRRRVQICMGLLKP----FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~~----p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      ..|||||+||++||++++..    |++|||||||+|||+..+..+.+.|+++.  .|.+||++||++..+. +||++++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~--~~~~vi~iTH~~~~~~-~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS--ERHQVLCVTHLPQVAA-HADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEEChHHHHH-hcCeEEEE
Confidence            47999999999999999985    69999999999999999999999999985  3799999999998875 79999999


Q ss_pred             eCCe
Q 024989          159 AHGK  162 (259)
Q Consensus       159 ~~G~  162 (259)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            9864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.55  E-value=2.9e-15  Score=129.59  Aligned_cols=78  Identities=24%  Similarity=0.218  Sum_probs=56.1

Q ss_pred             HHHHHHHH--ccCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989           92 RVQICMGL--LKPFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus        92 rv~ia~al--~~~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                      +..++.++  +.+|+++|||||   |+++|+...  .+.++..+.+..+.++|++||+. ++..++|++..+.+|++...
T Consensus        97 ~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~  173 (216)
T cd03284          97 MVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVK  173 (216)
T ss_pred             HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEE
Confidence            34455555  569999999999   888898653  23444444332388999999996 55668898888888888776


Q ss_pred             cChhHH
Q 024989          167 MPMDKV  172 (259)
Q Consensus       167 g~~~~~  172 (259)
                      +..+++
T Consensus       174 ~~~~~l  179 (216)
T cd03284         174 EKGGGV  179 (216)
T ss_pred             eeCCeE
Confidence            665554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.55  E-value=1.1e-14  Score=141.69  Aligned_cols=90  Identities=19%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             HHHHHcCCCccccCCcCCHHHHHHHHHHHHHc----------cCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           69 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----------KPFKVLLLDEIT-VDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        69 ~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~----------~~p~lllLDEPt-~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      ..+...|. ..+.+.+|||||+||++||+||+          .+|+++|||||| ++||+..+..++++|.++   .|.|
T Consensus       454 ~~~~~~g~-~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~  529 (562)
T PHA02562        454 ETIKSRGR-EDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTN  529 (562)
T ss_pred             hHHhcCCC-CccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCe
Confidence            34444443 24467899999999999999987          599999999998 789999999999999986   3789


Q ss_pred             EEEEeCChhHHhccCCeEEEEeC-CeE
Q 024989          138 IIYATHIFDGLENWPSHIVYVAH-GKL  163 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~-G~i  163 (259)
                      ||++||+.+.. ..||++++|.+ |+.
T Consensus       530 iiiish~~~~~-~~~d~~~~l~~~~~~  555 (562)
T PHA02562        530 VFVISHKDHDP-QKFDRHLKMEKVGRF  555 (562)
T ss_pred             EEEEECchhch-hhhhcEEEEEEECCe
Confidence            99999997655 56899999986 544

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.50  E-value=4.3e-14  Score=130.64  Aligned_cols=157  Identities=21%  Similarity=0.286  Sum_probs=116.4

Q ss_pred             CcEEEEEcCCCCCccccC--CceEEEEc-Ceec-cccEEEecccCCCCccCcHHHHHhcc---CCCCHHHHHHHHHHcCC
Q 024989            4 PEMVKVLGRSAFHDTALT--SSGDLSYL-GGEW-RREVAFAGFEVPIQMDVSAEKMIFGV---AGIDPQRRAELIKVLDI   76 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~--~~G~I~~~-G~~~-~~~i~~v~~~~~~~~~lt~~~~~~~~---~~~~~~~~~~~l~~~~l   76 (259)
                      .|++..+|.||-|||||.  -.|.+.=+ |.++ .-.++|-||...--..-|++.++...   ...++.-+.++++-+.+
T Consensus       367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i  446 (592)
T KOG0063|consen  367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI  446 (592)
T ss_pred             ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence            578899999999999994  12211111 0111 23577877765443344565544211   11234455667777666


Q ss_pred             C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989           77 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus        77 ~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr  154 (259)
                      +  .++-+.+||||++|||+||.+|=..+++++.|||.+-||.+.+..--..++++.-..++|-+++.||+-.+..++||
T Consensus       447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladr  526 (592)
T KOG0063|consen  447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADR  526 (592)
T ss_pred             HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcce
Confidence            4  46778999999999999999999999999999999999999999888888887665689999999999988899999


Q ss_pred             EEEEeC
Q 024989          155 IVYVAH  160 (259)
Q Consensus       155 v~~l~~  160 (259)
                      +++...
T Consensus       527 vivf~G  532 (592)
T KOG0063|consen  527 VIVFEG  532 (592)
T ss_pred             eEEEec
Confidence            988753

>PRK10869 recombination and repair protein; Provisional

Probab=99.49  E-value=9.1e-14  Score=135.36  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=69.1

Q ss_pred             cCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989           84 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      .|||||+||++||++++.    +|+++|||||++|||+.....+.+.|+++.  .+.+||+|||++..+ .+||+.+.+.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~--~~~qvi~iTH~~~~~-~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG--ESTQVMCVTHLPQVA-GCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHH-HhCCEEEEEe
Confidence            589999999999999997    589999999999999999999999999885  368999999999866 6899999998


Q ss_pred             CCe
Q 024989          160 HGK  162 (259)
Q Consensus       160 ~G~  162 (259)
                      ++.
T Consensus       507 k~~  509 (553)
T PRK10869        507 KET  509 (553)
T ss_pred             ccc
Confidence            754

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.49  E-value=3.3e-13  Score=116.19  Aligned_cols=87  Identities=26%  Similarity=0.350  Sum_probs=62.2

Q ss_pred             HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                      +.+.+++....+..    ..||||||..++||.-|+    .+++++|||||.++||...+..+.++|.++.+  +.-+|+
T Consensus       121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii  194 (220)
T PF02463_consen  121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFII  194 (220)
T ss_dssp             HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEE
T ss_pred             cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence            34455555554432    399999999999997663    56789999999999999999999999998753  578999


Q ss_pred             EeCChhHHhccCCeEEEE
Q 024989          141 ATHIFDGLENWPSHIVYV  158 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l  158 (259)
                      +||+-.... .||+.+.+
T Consensus       195 ~Th~~~~~~-~a~~~~~v  211 (220)
T PF02463_consen  195 TTHNPEMFE-DADKLIGV  211 (220)
T ss_dssp             E-S-HHHHT-T-SEEEEE
T ss_pred             ccccccccc-cccccccc
Confidence            999976555 47886654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK03918 chromosome segregation protein; Provisional

Probab=99.48  E-value=1.1e-13  Score=141.26  Aligned_cols=80  Identities=21%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             cccCCcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           79 SWRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        79 ~~~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      ..++..|||||+|      |++||++++.+|+++||||||++||+..+..+.++|..+.. .+.|||++||+++. ..+|
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~-~~~~  860 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEEL-KDAA  860 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH-HHhC
Confidence            3567899999999      55566688899999999999999999999999999998754 47899999999875 5689


Q ss_pred             CeEEEEeC
Q 024989          153 SHIVYVAH  160 (259)
Q Consensus       153 drv~~l~~  160 (259)
                      |++++|..
T Consensus       861 d~~~~l~~  868 (880)
T PRK03918        861 DYVIRVSL  868 (880)
T ss_pred             CeEEEEEe
Confidence            99999983

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.46  E-value=1.8e-13  Score=142.03  Aligned_cols=81  Identities=23%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             cccCCcCCHHHHHHHHHHHHHcc--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLK--------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  150 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~--------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~  150 (259)
                      .+++.+|||||+++++||+||+.        +|++|||||||++||+.+...+++.|..+.. .|+||+||||..+..++
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHh
Confidence            46789999999999999999995        8999999999999999999999999999865 59999999999999999


Q ss_pred             cCCeEEEEeC
Q 024989          151 WPSHIVYVAH  160 (259)
Q Consensus       151 ~~drv~~l~~  160 (259)
                      +..+|.|-..
T Consensus      1023 i~~qi~V~k~ 1032 (1047)
T PRK10246       1023 IPVQIKVKKI 1032 (1047)
T ss_pred             ccceEEEEEC
Confidence            9999888875

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.46  E-value=3.3e-14  Score=143.21  Aligned_cols=78  Identities=22%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      ...+++||+||+|++.|++++ .+|.++|||||++|+||.....+.. ++..+. +.|.++|++||+.+.....+++..+
T Consensus       385 ~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~el~~~~~~~~~v  462 (782)
T PRK00409        385 EQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYKELKALMYNREGV  462 (782)
T ss_pred             hhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChHHHHHHHhcCCCe
Confidence            346789999999999999998 8999999999999999999988864 565554 4689999999999988877776655


Q ss_pred             E
Q 024989          158 V  158 (259)
Q Consensus       158 l  158 (259)
                      +
T Consensus       463 ~  463 (782)
T PRK00409        463 E  463 (782)
T ss_pred             E
Confidence            4

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.45  E-value=3.2e-13  Score=120.47  Aligned_cols=125  Identities=18%  Similarity=0.130  Sum_probs=77.7

Q ss_pred             cEEEEEcCCCCCcccc---------CCceEEEEcCeeccc-----c----EEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR-----E----VAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~-----~----i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      ..++|+||||||||||         +++|+|.++|+++..     .    +++++|.. +..                  
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~------------------  172 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGI------------------  172 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccc------------------
Confidence            4689999999999999         479999999976420     0    11111110 000                  


Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                                    +..-|.+=.|.....+.+.+++|+++|+|||++      ...+..++..+ . .|.|+|++||+.+
T Consensus       173 --------------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~~vI~ttH~~~  230 (270)
T TIGR02858       173 --------------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGVSIIATAHGRD  230 (270)
T ss_pred             --------------cccccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCCEEEEEechhH
Confidence                          000011111111123344447999999999974      33355555544 3 5999999999765


Q ss_pred             H--H-----------hccCCeEEEEeCCeEEEecChhHH
Q 024989          147 G--L-----------ENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       147 ~--~-----------~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      .  +           ..+++|+++|++|+  ..|+++++
T Consensus       231 ~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       231 VEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             HHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            4  5           36789999999886  56666554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.45  E-value=3.3e-13  Score=138.28  Aligned_cols=78  Identities=21%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             cCCcCCHHHHHHHHH------HHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-C-cEEEEEeCChhHHhccC
Q 024989           81 RMHKVSDGQRRRVQI------CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-G-ATIIYATHIFDGLENWP  152 (259)
Q Consensus        81 ~~~~LSgG~~qrv~i------a~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~-g-~tiii~sH~~~~~~~~~  152 (259)
                      ++..|||||++|++|      |++|+.+|++++|||||++||+..+..+.++|....... | .|||++||+++++ .+|
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~  876 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA  876 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence            578999999999975      589999999999999999999999999999998654433 3 4899999999977 589


Q ss_pred             CeEEEEe
Q 024989          153 SHIVYVA  159 (259)
Q Consensus       153 drv~~l~  159 (259)
                      |+++.+.
T Consensus       877 d~ii~~~  883 (895)
T PRK01156        877 DVAYEVK  883 (895)
T ss_pred             CeEEEEE
Confidence            9999987

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.45  E-value=6.5e-13  Score=114.66  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHh--cCcEEEEEeCChhHHhccC
Q 024989           88 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA-DLLRFLRKECEE--RGATIIYATHIFDGLENWP  152 (259)
Q Consensus        88 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~-~~~~~l~~~~~~--~g~tiii~sH~~~~~~~~~  152 (259)
                      -+-||++++++++.+|.++|||||++|+|+.... .+..+++.+.+.  .+.++|++||+.+.+..+.
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            4679999999999999999999999999997644 446788877643  1358999999999887754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.44  E-value=1.8e-13  Score=114.40  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=92.1

Q ss_pred             EEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc--cCCCCHHHHHHHHHHcCC-C-ccccC
Q 024989            7 VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRRAELIKVLDI-D-LSWRM   82 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~--~~~~~~~~~~~~l~~~~l-~-~~~~~   82 (259)
                      +.|.||+|+|||+|..+  +.+.+-.-.+.+.|+..+      .+..++...  ..+++.+   + +...+. . .+..+
T Consensus         2 ~li~G~~G~GKT~l~~~--~~~~~~~~g~~v~~~s~e------~~~~~~~~~~~~~g~~~~---~-l~~~g~l~~~d~~~   69 (187)
T cd01124           2 TLLSGGPGTGKTTFALQ--FLYAGLARGEPGLYVTLE------ESPEELIENAESLGWDLE---R-LEDEGLLAIVDADP   69 (187)
T ss_pred             EEEEcCCCCCHHHHHHH--HHHHHHHCCCcEEEEECC------CCHHHHHHHHHHcCCChH---H-HHhcCCeEEEecCc
Confidence            67999999999998521  000010011235555332      122322211  1133321   1 122222 1 35667


Q ss_pred             CcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEeCChhH------
Q 024989           83 HKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDG------  147 (259)
Q Consensus        83 ~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD---~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~------  147 (259)
                      ..+|+|++|      +.....+...+|+++++|||++.+|   +..+..+.+++..+.+ .|.|+|+++|+...      
T Consensus        70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~  148 (187)
T cd01124          70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFG  148 (187)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccC
Confidence            889999998      5555556678999999999999999   8888888888887764 59999999998775      


Q ss_pred             ---HhccCCeEEEEe
Q 024989          148 ---LENWPSHIVYVA  159 (259)
Q Consensus       148 ---~~~~~drv~~l~  159 (259)
                         +..+||.++.|+
T Consensus       149 ~~~~~~~aD~ii~l~  163 (187)
T cd01124         149 GGDVEYLVDGVIRLR  163 (187)
T ss_pred             cCceeEeeeEEEEEE
Confidence               788999999887

A related protein is found in archaea.

>TIGR01069 mutS2 MutS2 family protein

Probab=99.44  E-value=7.2e-14  Score=140.50  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ..+.+||+||+++..|++++ .+|.++|||||++|+||.....+ +.++..+. +.|.++|++||+.+..
T Consensus       381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~-~~g~~viitTH~~eL~  448 (771)
T TIGR01069       381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKELK  448 (771)
T ss_pred             hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHH
Confidence            34678999999999998877 78999999999999999999998 56776665 4689999999998764

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR00606 rad50 rad50

Probab=99.39  E-value=6.3e-13  Score=140.95  Aligned_cols=73  Identities=23%  Similarity=0.197  Sum_probs=65.8

Q ss_pred             cCCcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChhHHhc
Q 024989           81 RMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFDGLEN  150 (259)
Q Consensus        81 ~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~----~~g~tiii~sH~~~~~~~  150 (259)
                      ..+.|||||+|      |++||+||+.+|++|+|||||+|||+.+...+.+.|..+..    ..|.|||+|||+++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            45789999999      99999999999999999999999999999999998887642    247899999999999998


Q ss_pred             cCC
Q 024989          151 WPS  153 (259)
Q Consensus       151 ~~d  153 (259)
                      +|.
T Consensus      1276 ~~~ 1278 (1311)
T TIGR00606      1276 LGR 1278 (1311)
T ss_pred             Hhh
Confidence            864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.36  E-value=1.1e-12  Score=136.62  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             ccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989           80 WRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  155 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv  155 (259)
                      .++..|||||+||++||++++    .+|+++||||||++||+..+..+.++|..+++  +.+||||||+++.+ .+||++
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhhH
Confidence            467899999999999999984    67899999999999999999999999998753  57899999999976 569998


Q ss_pred             EEEe
Q 024989          156 VYVA  159 (259)
Q Consensus       156 ~~l~  159 (259)
                      +.+.
T Consensus      1162 ~~~~ 1165 (1179)
T TIGR02168      1162 YGVT 1165 (1179)
T ss_pred             eeee
Confidence            7553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.35  E-value=8.6e-12  Score=122.92  Aligned_cols=97  Identities=20%  Similarity=0.298  Sum_probs=86.4

Q ss_pred             ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989           78 LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  155 (259)
Q Consensus        78 ~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv  155 (259)
                      +++...+|||||.||+.||.-+=..=  =+++||||+.||-+.--.++++.|+++. +.|-|+|++.||-+.+. .||+|
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDedti~-~AD~i  552 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDEDTIR-AADHI  552 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHHHHh-hcCEE
Confidence            57889999999999999999997764  4899999999999999999999999986 57999999999977555 59999


Q ss_pred             EEE------eCCeEEEecChhHHHHHh
Q 024989          156 VYV------AHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       156 ~~l------~~G~i~~~g~~~~~~~~~  176 (259)
                      +-|      +.|.|++.|++++++...
T Consensus       553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~  579 (935)
T COG0178         553 IDIGPGAGEHGGEIVAEGTPEELLANP  579 (935)
T ss_pred             EeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence            987      679999999999998754

>PRK13695 putative NTPase; Provisional

Probab=99.28  E-value=1.5e-12  Score=108.49  Aligned_cols=81  Identities=12%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDE--Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      +....+|++++-+..+++..+.+|+++++||  |+.++|+.    +.+.+.+.. +.|.++|+++|+ ..+..++|++..
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~  147 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKS  147 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhc
Confidence            3456799999999999999999999999999  55566654    445555554 358999999999 466678999999


Q ss_pred             EeCCeEEEe
Q 024989          158 VAHGKLQLA  166 (259)
Q Consensus       158 l~~G~i~~~  166 (259)
                      +.+|++...
T Consensus       148 ~~~~~i~~~  156 (174)
T PRK13695        148 RPGGRVYEL  156 (174)
T ss_pred             cCCcEEEEE
Confidence            999998764

>PRK00064 recF recombination protein F; Reviewed

Probab=99.26  E-value=1.4e-11  Score=114.34  Aligned_cols=78  Identities=29%  Similarity=0.402  Sum_probs=68.4

Q ss_pred             CCcCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           82 MHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      ...+|.||+|++.||++|+         .+|+++|||||+++||+..+..+++.+.++    +..++++||+.+.+..++
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~  346 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLL  346 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhh
Confidence            4579999999999999996         799999999999999999999999988643    458999999998877764


Q ss_pred             --CeEEEEeCCeE
Q 024989          153 --SHIVYVAHGKL  163 (259)
Q Consensus       153 --drv~~l~~G~i  163 (259)
                        ++++.|++|++
T Consensus       347 ~~~~i~~v~~G~i  359 (361)
T PRK00064        347 ENAKIFHVEQGKI  359 (361)
T ss_pred             ccCcEEEEeCCEE
Confidence              47999999987

>PRK02224 chromosome segregation protein; Provisional

Probab=99.25  E-value=1.6e-11  Score=125.60  Aligned_cols=79  Identities=25%  Similarity=0.238  Sum_probs=68.1

Q ss_pred             cCCcCCHHHHH------HHHHHHHHccC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChhH
Q 024989           81 RMHKVSDGQRR------RVQICMGLLKP-----F-KVLLLDEITVDLDVLARADLLRFLRKECEERGA-TIIYATHIFDG  147 (259)
Q Consensus        81 ~~~~LSgG~~q------rv~ia~al~~~-----p-~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~-tiii~sH~~~~  147 (259)
                      .+..||||||+      |++++++++.+     | +++||||||++||+..+..+.++|..+.. .|. +||++||+.+.
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~  856 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL  856 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence            46799999999      89999998863     3 67999999999999999999999998764 454 89999999998


Q ss_pred             HhccCCeEEEEeCC
Q 024989          148 LENWPSHIVYVAHG  161 (259)
Q Consensus       148 ~~~~~drv~~l~~G  161 (259)
                      +. .||+++.|.+.
T Consensus       857 ~~-~ad~~~~~~~~  869 (880)
T PRK02224        857 VG-AADDLVRVEKD  869 (880)
T ss_pred             HH-hcCeeEEeecC
Confidence            85 69999999654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.25  E-value=1.2e-11  Score=129.14  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             cCCcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEE
Q 024989           81 RMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  156 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~  156 (259)
                      ++..||||||++++||++|+.    +|+++|||||+++||+..+..+.++|.++..  +.++|++||+...+ .+||+++
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-HhcceeE
Confidence            467899999999999999984    7899999999999999999999999998753  57899999998755 7899998


Q ss_pred             EEeC
Q 024989          157 YVAH  160 (259)
Q Consensus       157 ~l~~  160 (259)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            7754

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.23  E-value=6.5e-11  Score=103.32  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             CCCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc--CCCCHHHHHHHHHHcCCCcc
Q 024989            2 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGIDPQRRAELIKVLDIDLS   79 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~--~~~~~~~~~~~l~~~~l~~~   79 (259)
                      -+|+++.|+|++|||||||...  +...+......+.|+..+      .+..+++..+  .+++.   +++...=.+...
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~--~~~~~~~~g~~~~yi~~e------~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~   90 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQR--LAYGFLQNGYSVSYVSTQ------LTTTEFIKQMMSLGYDI---NKKLISGKLLYI   90 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHH--HHHHHHhCCCcEEEEeCC------CCHHHHHHHHHHhCCch---HHHhhcCcEEEE
Confidence            3689999999999999999410  000000001234555322      1222221110  11111   111111000000


Q ss_pred             ccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH----
Q 024989           80 WRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFDG----  147 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gL----D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~----  147 (259)
                      .....+|+++.++-.+.+.+.    .+|+++++||||+++    |+..++.++++++.+++ .|.|+++ ||+...    
T Consensus        91 ~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~  168 (230)
T PRK08533         91 PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDES  168 (230)
T ss_pred             EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eecccccccc
Confidence            111246766655555544443    369999999999999    88888889999988865 4776665 555443    


Q ss_pred             ----HhccCCeEEEEe
Q 024989          148 ----LENWPSHIVYVA  159 (259)
Q Consensus       148 ----~~~~~drv~~l~  159 (259)
                          ++.+||-|+.|+
T Consensus       169 ~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        169 VLTILRTAATMLIRLE  184 (230)
T ss_pred             cceeEEEeeeEEEEEE
Confidence                244556666554

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.17  E-value=8.7e-12  Score=115.53  Aligned_cols=104  Identities=22%  Similarity=0.313  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ..++++.++|.  .++-+.+||||+-||.+||.+.+.+.++.++|||.+.||...+..-...|+.+.. ...-||++.||
T Consensus       194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHD  272 (592)
T KOG0063|consen  194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEHD  272 (592)
T ss_pred             HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEee
Confidence            34566666664  4677899999999999999999999999999999999999999999999999875 57889999999


Q ss_pred             hhHHhccCCeEEEEeC-----CeEEEecChhH
Q 024989          145 FDGLENWPSHIVYVAH-----GKLQLAMPMDK  171 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~-----G~i~~~g~~~~  171 (259)
                      ++.+..+.|-+-++..     |-+....+..+
T Consensus       273 LsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~  304 (592)
T KOG0063|consen  273 LSVLDYLSDFICCLYGVPSAYGVVTMPFSVRE  304 (592)
T ss_pred             chHHHhhhcceeEEecCCccceEEEeccchhh
Confidence            9999999999888864     55555444443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.17  E-value=3.3e-11  Score=103.40  Aligned_cols=49  Identities=10%  Similarity=0.076  Sum_probs=44.1

Q ss_pred             CcCCHH--HHHHHHHHHHHccCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q 024989           83 HKVSDG--QRRRVQICMGLLKPFKVLLLDEIT-----VDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        83 ~~LSgG--~~qrv~ia~al~~~p~lllLDEPt-----~gLD~~~~~~~~~~l~~~~  131 (259)
                      ...||+  +++++.||++++.+|+++++||||     ++|||..++.+.+.+++++
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            334444  899999999999999999999999     9999999999999999875

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.12  E-value=2.6e-10  Score=99.39  Aligned_cols=148  Identities=12%  Similarity=0.143  Sum_probs=85.3

Q ss_pred             CCCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc--cCCCCHHHH--HHHHHHcCCC
Q 024989            2 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRR--AELIKVLDID   77 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~--~~~~~~~~~--~~~l~~~~l~   77 (259)
                      .+|.++.|.|++|+|||||...  +.+.+..-...+.|+..+..      ..+++..  ..+++....  ...+..+...
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~--~~~~~~~~g~~~~y~~~e~~------~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~   94 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQ--FVYGALKQGKKVYVITTENT------SKSYLKQMESVKIDISDFFLWGYLRIFPLN   94 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHH--HHHHHHhCCCEEEEEEcCCC------HHHHHHHHHHCCCChhHHHhCCCceEEecc
Confidence            4789999999999999999521  00011011134556543211      1222111  112221110  0011111111


Q ss_pred             ccccCCcCCHHHHHHHHHHHHHcc--CCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-----
Q 024989           78 LSWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEITVD---LDVLARADLLRFLRKECEERGATIIYATHIFDG-----  147 (259)
Q Consensus        78 ~~~~~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~g---LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~-----  147 (259)
                       .......|.++.+.+..+..++.  +|+++++||||+.   .|......+++.++.+++ .|.|+++++|....     
T Consensus        95 -~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~  172 (234)
T PRK06067         95 -TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELL  172 (234)
T ss_pred             -ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHH
Confidence             11234567889999999999987  8999999999954   555555566666766554 58999999998765     


Q ss_pred             --HhccCCeEEEEe
Q 024989          148 --LENWPSHIVYVA  159 (259)
Q Consensus       148 --~~~~~drv~~l~  159 (259)
                        +..++|-++.|+
T Consensus       173 ~~~~~l~DgvI~L~  186 (234)
T PRK06067        173 SRIRSICDVYLKLR  186 (234)
T ss_pred             HHHHhheEEEEEEE
Confidence              344555555554

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.08  E-value=5.8e-10  Score=98.48  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             CcCCHHH--------HHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           83 HKVSDGQ--------RRRVQICMGLLKPFKVLLLDEITVDLDVLARAD-LLRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        83 ~~LSgG~--------~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~-~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                      ..+|||+        +||+++|+++..++.|.+|  ||+.+|+.+... +.  +.++. ..+.|.|+.||.+..... .|
T Consensus       128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la~~~~-~p  201 (249)
T cd01128         128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLAERRI-FP  201 (249)
T ss_pred             CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHhhCCC-CC
Confidence            3479999        9999999999999999999  999999644432 33  44443 257899999999998775 79


Q ss_pred             eEEEEeCCeEE
Q 024989          154 HIVYVAHGKLQ  164 (259)
Q Consensus       154 rv~~l~~G~i~  164 (259)
                      .|.+|+.|++.
T Consensus       202 aI~vl~s~sr~  212 (249)
T cd01128         202 AIDILKSGTRK  212 (249)
T ss_pred             eEEEcCCCCcc
Confidence            99999999983

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.07  E-value=1.7e-09  Score=94.05  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=42.7

Q ss_pred             HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           92 RVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        92 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      ++.-+..-+.+|.++|||||.+|.|+.....+ +.+++.+.+..+.++|++||+.+...
T Consensus       100 ~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~  158 (222)
T cd03287         100 ETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE  158 (222)
T ss_pred             HHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence            33333334568999999999999887766664 56676665434889999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00611 recf recF protein

Probab=99.05  E-value=4e-10  Score=104.77  Aligned_cols=62  Identities=27%  Similarity=0.448  Sum_probs=56.8

Q ss_pred             cCCHHHHHHHHHHHHHcc---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           84 KVSDGQRRRVQICMGLLK---------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al~~---------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      .+|.||||++.||.+|+.         +|++||||||+++||+..+..+++.|.+.    |.+|+++||+++.+.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~  345 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK  345 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence            589999999999999999         99999999999999999999999998642    679999999987765

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.04  E-value=3.7e-10  Score=97.88  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           89 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        89 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~-l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      +-+++.-....+.+|.++|||||++|+++.....+... ++.+.+..+.++|++||+++.+..++
T Consensus        96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286          96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            34444444444678999999999999999998888777 55555433899999999999988876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.02  E-value=2.2e-09  Score=101.77  Aligned_cols=58  Identities=14%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHH-hcCc-----EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989          112 TVDLDVLARADLLRFLRKECE-ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       112 t~gLD~~~~~~~~~~l~~~~~-~~g~-----tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~  171 (259)
                      |+|+||.....+.+++.++.. +.|.     ||++++||+++  .+||++..|.+|+++.+++.++
T Consensus       277 ~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        277 TKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence            789999999999999998753 3575     99999999994  8999999999999999987754

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.96  E-value=2.6e-09  Score=110.01  Aligned_cols=79  Identities=23%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             ccCCcCCHHHHHHHHHHHHHc------cC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhcc
Q 024989           80 WRMHKVSDGQRRRVQICMGLL------KP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW  151 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~------~~--p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~  151 (259)
                      +++.+||||++-.++||.+|+      .+  -++|+|||||..||+..+..+.+.|.++.. .|.+|+||||+-++.+ .
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~eel~e-~  888 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGRQIIIISHVEELKE-R  888 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHH-h
Confidence            578899999999888877764      55  799999999999999999999999999875 4899999999977665 5


Q ss_pred             CCeEEEEeC
Q 024989          152 PSHIVYVAH  160 (259)
Q Consensus       152 ~drv~~l~~  160 (259)
                      +|+++.+..
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            788777764

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.92  E-value=1.5e-09  Score=95.02  Aligned_cols=126  Identities=19%  Similarity=0.319  Sum_probs=76.9

Q ss_pred             CcEEEEEcCCCCCccccC-------CceEEEEcC--eec--cccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989            4 PEMVKVLGRSAFHDTALT-------SSGDLSYLG--GEW--RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK   72 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~-------~~G~I~~~G--~~~--~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~   72 (259)
                      |.+..|+||.|+|||+|.       .+|. .+.|  ...  ..++-|+.-+.+      ..++        .+++..+..
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~-~~~g~~~~~~~~~~Vlyi~~Ed~------~~~i--------~~Rl~~i~~   65 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGK-NLFGGGLKVTEPGRVVYLSAEDP------REEI--------HRRLEAILQ   65 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCc-cccCCccccCCCceEEEEECCCC------HHHH--------HHHHHHHHh
Confidence            678899999999999993       3453 2333  111  223445432211      1110        123344444


Q ss_pred             HcCCC-ccccCCcCCHHHHHHHHHHH----------------HHccCCcEEEEeCCCC------CCCHHHHHHHHHHHHH
Q 024989           73 VLDID-LSWRMHKVSDGQRRRVQICM----------------GLLKPFKVLLLDEITV------DLDVLARADLLRFLRK  129 (259)
Q Consensus        73 ~~~l~-~~~~~~~LSgG~~qrv~ia~----------------al~~~p~lllLDEPt~------gLD~~~~~~~~~~l~~  129 (259)
                      .+++. ...+.. ..+|+.|++.+++                +...+|+++|+| |++      .+|+.....+++.|.+
T Consensus        66 ~~~~~~~~~rl~-~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~  143 (239)
T cd01125          66 HLEPDDAGDRLF-IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRR  143 (239)
T ss_pred             hcCCcCcccceE-EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHH
Confidence            44332 111111 1245555554443                346899999999 775      4799999999999999


Q ss_pred             HHHhcCcEEEEEeCChh
Q 024989          130 ECEERGATIIYATHIFD  146 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~  146 (259)
                      ++++.|.|||+++|...
T Consensus       144 ~a~~~g~avl~v~H~~K  160 (239)
T cd01125         144 IAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHHHhCCEEEEEeccCc
Confidence            88777999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK14079 recF recombination protein F; Provisional

Probab=98.89  E-value=3.7e-09  Score=97.77  Aligned_cols=77  Identities=25%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             cCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989           84 KVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr  154 (259)
                      -+|+|||+++.+|..|+         .+|+++|||||+++||+..+..+++.|...    .. ++++|-+   ...+|++
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q-~~it~t~---~~~~~~~  334 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQ-AIVAGTE---APPGAAL  334 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----Cc-EEEEcCC---CCCCCce
Confidence            47999999999999999         899999999999999999999999888642    12 3444332   5668999


Q ss_pred             EEEEeCCeEEEecC
Q 024989          155 IVYVAHGKLQLAMP  168 (259)
Q Consensus       155 v~~l~~G~i~~~g~  168 (259)
                      ++.|.+|++.-..+
T Consensus       335 ~~~~~~~~~~~~~~  348 (349)
T PRK14079        335 TLRIEAGVFTPEAP  348 (349)
T ss_pred             EEEEeccEecCCCC
Confidence            99999998865443

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.89  E-value=1.2e-08  Score=85.76  Aligned_cols=82  Identities=24%  Similarity=0.242  Sum_probs=64.9

Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      +.....|-|+-=---+.+.+ ++.-++|||||-++|-|.-+-.++..|+++++ .|.-|||+||-.=.+.----+|+-++
T Consensus       125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChhheeCCCcEEEEEe
Confidence            34578899997655555554 56789999999999999999999999999976 58999999998765544445677787


Q ss_pred             CCeE
Q 024989          160 HGKL  163 (259)
Q Consensus       160 ~G~i  163 (259)
                      .+.+
T Consensus       203 ~~g~  206 (233)
T COG3910         203 ESGI  206 (233)
T ss_pred             cCCc
Confidence            7764

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.86  E-value=4.1e-09  Score=112.22  Aligned_cols=62  Identities=24%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             cCCcCCHHHHHHHH----HHHH--------HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           81 RMHKVSDGQRRRVQ----ICMG--------LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        81 ~~~~LSgG~~qrv~----ia~a--------l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +++.|||||||++.    +|++        +..+|+++||||||+|||+.++..+++++.++    |.++||+||.+-
T Consensus      1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~W 1317 (1353)
T TIGR02680      1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREW 1317 (1353)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchh
Confidence            46899999999996    5645        55899999999999999999999999999765    688999999863

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.86  E-value=5.7e-09  Score=83.98  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             cCCHHHHHHHHHHHHHccCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           84 KVSDGQRRRVQICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~----------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ..+.+..++...+.+...+|+++++|||++          +.|......+.+++.. .++.+.|+|+++|.....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence            445566678888999999999999999994          4555555666666544 455699999999987544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.80  E-value=1.8e-10  Score=110.78  Aligned_cols=70  Identities=14%  Similarity=0.274  Sum_probs=55.4

Q ss_pred             cccCCcCCHHHHHHHHHH--HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------H
Q 024989           79 SWRMHKVSDGQRRRVQIC--MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG--------L  148 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia--~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~--------~  148 (259)
                      ++....+|+|++|||.|+  .+|...|+..          +..++.++++++.+. +.|+|+|++||+++.        +
T Consensus       110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~  178 (484)
T TIGR02655       110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGV  178 (484)
T ss_pred             HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCc
Confidence            445678999999999999  6666655544          567788899888775 469999999999864        2


Q ss_pred             -hccCCeEEEEe
Q 024989          149 -ENWPSHIVYVA  159 (259)
Q Consensus       149 -~~~~drv~~l~  159 (259)
                       +.+||.|+.|+
T Consensus       179 ~e~laDgVI~L~  190 (484)
T TIGR02655       179 EEFVSDNVVILR  190 (484)
T ss_pred             eeEeeeeEEEEE
Confidence             67899999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.79  E-value=2.3e-08  Score=84.77  Aligned_cols=66  Identities=24%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             CCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           82 MHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ...+|.|++|.+.|+.++...+   .++++|||-++|.|..++.+.++|.+... .+.-||++||....+
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il  302 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL  302 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence            4567999999999998888776   89999999999999999999999987654 578999999997654

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.76  E-value=1.7e-08  Score=95.38  Aligned_cols=140  Identities=9%  Similarity=0.005  Sum_probs=88.3

Q ss_pred             CCCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCc-
Q 024989            2 VEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL-   78 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~-   78 (259)
                      -+|+.++|+|+||+|||||..  .|..    +.-...++++++..     ..+.+++           ...+..-++.. 
T Consensus       154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~----~~~~gvI~~iGerg-----~ev~e~~-----------~~~l~~~gl~~t  213 (432)
T PRK06793        154 GIGQKIGIFAGSGVGKSTLLGMIAKNA----KADINVISLVGERG-----REVKDFI-----------RKELGEEGMRKS  213 (432)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHhccC----CCCeEEEEeCCCCc-----ccHHHHH-----------HHHhhhccccee
Confidence            479999999999999999842  1110    00001122222211     1222221           11122222211 


Q ss_pred             --cccCCcCCHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           79 --SWRMHKVSDGQRRRVQICMGLL-------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        79 --~~~~~~LSgG~~qrv~ia~al~-------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                        -....+.|.|+|+|+..+.+.+       .++-++++|+||++.|+.  +++...+.+.-. .|.+..+.||...   
T Consensus       214 vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~---  287 (432)
T PRK06793        214 VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKK---  287 (432)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchh---
Confidence              1235788999999999999988       889999999999999995  566666666543 4888888898544   


Q ss_pred             ccCCeEEEEeCCeEEEecC
Q 024989          150 NWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       150 ~~~drv~~l~~G~i~~~g~  168 (259)
                       +++|.....+|.|.+.++
T Consensus       288 -L~ERag~~~~GSiT~~~t  305 (432)
T PRK06793        288 -LLERSGKTQKGSITGIYT  305 (432)
T ss_pred             -HHHHhccCCCcceEEEEE
Confidence             444545567898877554

>TIGR00152 dephospho-CoA kinase

Probab=98.63  E-value=7.4e-09  Score=87.29  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      ..++.+.||-..-.     ..|+-+|..||.++..+|+.+..+|  +.+||..++.+.+.+.+.. +.|.+||+.+|.+.
T Consensus        45 ~~~i~~~fg~~i~~-----~~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~  116 (188)
T TIGR00152        45 YEKIVDHFGAQILN-----EDGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLF  116 (188)
T ss_pred             HHHHHHHHCHHHhC-----CCCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhh
Confidence            44566777632100     1288999999999999999988877  8999999999999998764 34679999999996


Q ss_pred             H--HhccCCeEEEEeCC
Q 024989          147 G--LENWPSHIVYVAHG  161 (259)
Q Consensus       147 ~--~~~~~drv~~l~~G  161 (259)
                      +  +..+||.++++..+
T Consensus       117 e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152       117 ENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             hCCcHHhCCEEEEEECC
Confidence            5  77889999887654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.59  E-value=2.7e-08  Score=101.68  Aligned_cols=125  Identities=16%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             CcEEEEEcCCCCCccccCC-ceEEEEcCeeccccEE-EecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcccc
Q 024989            4 PEMVKVLGRSAFHDTALTS-SGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR   81 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~~-~G~I~~~G~~~~~~i~-~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~   81 (259)
                      +.++.|.|||.+||||+.. -|-+.+.     .++| |||-...   .+..              ++.+.-++|- .+..
T Consensus       607 ~~~~iiTGpN~~GKSt~lr~v~l~~il-----Aq~G~~VPa~~a---~i~~--------------~d~I~triga-~d~i  663 (854)
T PRK05399        607 RRLLLITGPNMAGKSTYMRQVALIVLL-----AQIGSFVPAESA---RIGI--------------VDRIFTRIGA-SDDL  663 (854)
T ss_pred             CcEEEEECCCCCCcHHHHHHHHHHHHH-----HhcCCceeccce---Eecc--------------cCeeeeccCc-cccc
Confidence            5689999999999999752 1111111     1122 3332210   1110              1122222221 2334


Q ss_pred             CCcCCHHHHHHHHHHHHHcc--CCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989           82 MHKVSDGQRRRVQICMGLLK--PFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~~--~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr  154 (259)
                      ...+|.=|.....++.+|-.  ++.++|||||   |+.+|..+  ..+.++..+.+..|.++|++||+ .++..++++
T Consensus       664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~-~el~~l~~~  738 (854)
T PRK05399        664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY-HELTELEEK  738 (854)
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence            56788888888888888766  8999999999   99999544  45667766655446899999999 555566664

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.57  E-value=2.3e-07  Score=79.08  Aligned_cols=57  Identities=19%  Similarity=0.185  Sum_probs=42.6

Q ss_pred             HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989           94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus        94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      +++++|..+|+++++|||.   |+...   ...+ +.+. .|..++.++|..+... .++|++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~---~~~l-~~a~-~G~~v~~t~Ha~~~~~-~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETI---RLAL-TAAE-TGHLVMSTLHTNSAAK-TIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHH---HHHH-HHHH-cCCEEEEEecCCcHHH-HHhHHHhhc
Confidence            5889999999999999996   66543   3333 3333 5899999999988664 578987663

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.54  E-value=1.6e-07  Score=85.39  Aligned_cols=72  Identities=11%  Similarity=-0.057  Sum_probs=56.1

Q ss_pred             HHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989           93 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus        93 v~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      -.++.+|-.+|+++++|||.+       .+.+++++... ..+.+++.++|..+ +....+|+..|..|++...|.+.+.
T Consensus       209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~  279 (308)
T TIGR02788       209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAY  279 (308)
T ss_pred             HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHH
Confidence            356778889999999999996       34567777654 32346799999988 5556899999999999888887766


Q ss_pred             H
Q 024989          173 K  173 (259)
Q Consensus       173 ~  173 (259)
                      .
T Consensus       280 ~  280 (308)
T TIGR02788       280 I  280 (308)
T ss_pred             H
Confidence            4

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.49  E-value=3e-07  Score=68.75  Aligned_cols=50  Identities=22%  Similarity=0.353  Sum_probs=38.1

Q ss_pred             ccCCcCCHHHHH-HHHHHHH------Hcc------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           80 WRMHKVSDGQRR-RVQICMG------LLK------PFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        80 ~~~~~LSgG~~q-rv~ia~a------l~~------~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      +..+++||||+| .+.+|.+      +..      .|++++|||||++||+..+..+++++++
T Consensus        28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            467899999994 3333333      233      3799999999999999999999998863

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.47  E-value=1.4e-06  Score=67.17  Aligned_cols=64  Identities=31%  Similarity=0.255  Sum_probs=48.7

Q ss_pred             cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEEeCC
Q 024989           81 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-----FLRKECEERGATIIYATHI  144 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-----~l~~~~~~~g~tiii~sH~  144 (259)
                      .....++++..+..++++-..+|.++++||+..-.+.........     .........+..+|.++|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            345777888888888888888899999999999999988876553     1122233457888999984

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.43  E-value=1.4e-07  Score=72.73  Aligned_cols=51  Identities=14%  Similarity=0.074  Sum_probs=36.6

Q ss_pred             CCcEEEEEcCCCCCccccCC---ceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALTS---SGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI   56 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~---~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~   56 (259)
                      +||+++|+||||||||||..   +|.+.+.|.+.        .+.+++++|+   ..+.++.+++
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni   75 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNI   75 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhc
Confidence            57999999999999999954   59999999864        1235566555   2334455544

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.40  E-value=1e-06  Score=76.24  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=39.1

Q ss_pred             CCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEe
Q 024989          102 PFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA  159 (259)
Q Consensus       102 ~p~lllLDEPt~gL--D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~  159 (259)
                      +|+++++|-|+.-+  +|...+.+...+....++.|.|+|+++|...        .++.+||-|+.|+
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            57788888776532  4444444444455555667999999999653        3566788888876

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.33  E-value=1.3e-06  Score=89.08  Aligned_cols=69  Identities=14%  Similarity=0.166  Sum_probs=60.8

Q ss_pred             ccCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh---------ccCCeEEEEeCCeEEEecCh
Q 024989          100 LKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLE---------NWPSHIVYVAHGKLQLAMPM  169 (259)
Q Consensus       100 ~~~p~lllLDEPt~gL-D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~---------~~~drv~~l~~G~i~~~g~~  169 (259)
                      ..+|+++++|||+.+| |+..+..+.++++...+ .|.+++++||+++.+.         +.|+++++|.+|++...+..
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            5799999999999999 79999999999998765 6899999999999886         57999999999998766544

>PLN03210 Resistant to P

Probab=98.30  E-value=1.5e-06  Score=91.77  Aligned_cols=131  Identities=19%  Similarity=0.228  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCCCCccccC----------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT----------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~----------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~   72 (259)
                      ++.+++|+|++|+|||||+          ..|.+.+++..+........+.........     ..   ...+...++++
T Consensus       206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~-----~~---l~~~~l~~il~  277 (1153)
T PLN03210        206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMK-----LH---LQRAFLSEILD  277 (1153)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchh-----HH---HHHHHHHHHhC
Confidence            4679999999999999994          356666654221111000000000000000     00   00111223333


Q ss_pred             HcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hcCcEEEEEeCChhHHhc
Q 024989           73 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE--ERGATIIYATHIFDGLEN  150 (259)
Q Consensus        73 ~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~--~~g~tiii~sH~~~~~~~  150 (259)
                      ..++    ++..+ ++.++|      |..++-+|+||+-    |..   ..++.+.....  ..|.+||++||+...+..
T Consensus       278 ~~~~----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~  339 (1153)
T PLN03210        278 KKDI----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGSRIIVITKDKHFLRA  339 (1153)
T ss_pred             CCCc----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence            3322    22222 556665      4466778899983    322   23444443221  248899999999998865


Q ss_pred             c-CCeEEEEe
Q 024989          151 W-PSHIVYVA  159 (259)
Q Consensus       151 ~-~drv~~l~  159 (259)
                      . +|+++.+.
T Consensus       340 ~~~~~~~~v~  349 (1153)
T PLN03210        340 HGIDHIYEVC  349 (1153)
T ss_pred             cCCCeEEEec
Confidence            4 67777653

syringae 6; Provisional

>TIGR00416 sms DNA repair protein RadA

Probab=98.27  E-value=2.7e-06  Score=81.42  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=47.0

Q ss_pred             cCCcEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HhccCCeEEEEeCCe
Q 024989          101 KPFKVLLLDEITVDL---------DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAHGK  162 (259)
Q Consensus       101 ~~p~lllLDEPt~gL---------D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~--------~~~~~drv~~l~~G~  162 (259)
                      .+|+++++|.-++=.         ++...+++...|.+++++.|.|+|+++|...+        ++.++|.|+.|+.++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            589999999765421         12345556667778888889999999997654        788999999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.26  E-value=3.6e-07  Score=77.45  Aligned_cols=102  Identities=16%  Similarity=0.164  Sum_probs=58.1

Q ss_pred             EEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcH---HHHH---hccC-CCCHHHHHHHHHHcCC
Q 024989            6 MVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSA---EKMI---FGVA-GIDPQRRAELIKVLDI   76 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~---~~~~---~~~~-~~~~~~~~~~l~~~~l   76 (259)
                      +++|.||||||||||..  .+.+  .    ...+.+++.+.. +..+..   ....   +... ..+.+...+.+..+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~----~~~~~v~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   73 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--G----NPKVVIISQDSY-YKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKN   73 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--C----CCCeEEEEeccc-ccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHC
Confidence            47999999999999941  1110  0    012333333321 111111   1111   1111 1233444455555544


Q ss_pred             C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989           77 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  117 (259)
Q Consensus        77 ~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~  117 (259)
                      .  ...+..++|.|++++..+   .+.+|+++|+|.|+.+.++
T Consensus        74 ~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          74 GKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             CCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence            2  355678899999876655   5788999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.26  E-value=3.5e-06  Score=72.75  Aligned_cols=58  Identities=22%  Similarity=0.331  Sum_probs=43.4

Q ss_pred             cCCcEEEEeCC-----CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC---------hhHHhccCCeEEEEe
Q 024989          101 KPFKVLLLDEI-----TVDLDVLARADLLRFLRKECEERGATIIYATHI---------FDGLENWPSHIVYVA  159 (259)
Q Consensus       101 ~~p~lllLDEP-----t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~---------~~~~~~~~drv~~l~  159 (259)
                      .+++++++|=.     +.+.|...+..+.++++.+. +.|.|+++++|.         +..++.+||.|++|+
T Consensus       106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            36899999932     23445556777888888775 469999999995         244788999999984

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.25  E-value=4.7e-06  Score=73.85  Aligned_cols=139  Identities=11%  Similarity=0.087  Sum_probs=71.2

Q ss_pred             CCCcEEEEEcCCCCCccccCCceEEEEcCe-eccccEEEecccCCCCccCcH--HHHHhcc--------CCCCHHHHHHH
Q 024989            2 VEPEMVKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSA--EKMIFGV--------AGIDPQRRAEL   70 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~G~I~~~G~-~~~~~i~~v~~~~~~~~~lt~--~~~~~~~--------~~~~~~~~~~~   70 (259)
                      .+|+++.|.|++|+|||||...  +....- .....+.|+..+.+.. .+..  ...+.+.        ...+.+++..+
T Consensus        28 ~~g~~~~i~g~~G~GKT~l~~~--~~~~~~~~~g~~vl~iS~E~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (271)
T cd01122          28 RKGELIILTAGTGVGKTTFLRE--YALDLITQHGVRVGTISLEEPVV-RTARRLLGQYAGKRLHLPDTVFIYTLEEFDAA  104 (271)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHH--HHHHHHHhcCceEEEEEcccCHH-HHHHHHHHHHhCCCcccCCccccccHHHHHHH
Confidence            4789999999999999998421  000000 0012355554322110 0000  0011111        11223344444


Q ss_pred             HHHcC-CC---ccccCCcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCH-------H-HHHHHHHHHHHHHHhcCc
Q 024989           71 IKVLD-ID---LSWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDV-------L-ARADLLRFLRKECEERGA  136 (259)
Q Consensus        71 l~~~~-l~---~~~~~~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~-------~-~~~~~~~~l~~~~~~~g~  136 (259)
                      ++.+. ..   .......++  ...-+..++.++  .+|+++++|.++.-.+.       . ....+...|+.++++.|+
T Consensus       105 ~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~v  182 (271)
T cd01122         105 FDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGI  182 (271)
T ss_pred             HHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence            44442 11   111112222  233444454443  47999999987664332       1 234566778888888899


Q ss_pred             EEEEEeCCh
Q 024989          137 TIIYATHIF  145 (259)
Q Consensus       137 tiii~sH~~  145 (259)
                      ||++++|--
T Consensus       183 tvll~sq~~  191 (271)
T cd01122         183 HITLVSHLR  191 (271)
T ss_pred             EEEEEeccc
Confidence            999999853

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.15  E-value=2.7e-05  Score=72.73  Aligned_cols=62  Identities=19%  Similarity=0.248  Sum_probs=45.5

Q ss_pred             ccCCcEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEeCC
Q 024989          100 LKPFKVLLLDEITV----DLD-----VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVAHG  161 (259)
Q Consensus       100 ~~~p~lllLDEPt~----gLD-----~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~~G  161 (259)
                      -.+|+++++|+-.+    .+|     ....+.+...|.+++++.|.|+|++.|--.        .++.++|.|+.++..
T Consensus       156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~  234 (372)
T cd01121         156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD  234 (372)
T ss_pred             hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence            35899999999632    332     334455666677888888999999999543        368889999988754

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.03  E-value=3.3e-05  Score=71.31  Aligned_cols=56  Identities=20%  Similarity=0.199  Sum_probs=40.3

Q ss_pred             HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989           94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus        94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      +++++|-.+|+++++||+.   |+.+....++    .+ ..|.+++.+.|-.+-.. ..+|+.-|
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~~~~~-~~~Rl~~~  242 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTNSAAQ-TIERIIDV  242 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCCCHHH-HHHHHHHh
Confidence            4678899999999999997   8876654333    23 35999999999865543 45666543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.96  E-value=8.3e-05  Score=71.11  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             cCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEe
Q 024989          101 KPFKVLLLDEITVDLD---------VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA  159 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD---------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~  159 (259)
                      .+|+++++|+.++-..         +...+.+...|.+++++.|.|+|+++|--.        .++.++|.++.++
T Consensus       155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le  230 (446)
T PRK11823        155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE  230 (446)
T ss_pred             hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence            5899999999875332         233445566677788888999999999532        3788899999887

>PF13175 AAA_15: AAA ATPase domain

Probab=97.95  E-value=2.2e-05  Score=73.03  Aligned_cols=67  Identities=22%  Similarity=0.310  Sum_probs=56.1

Q ss_pred             cCCcCCHHHHHHHHHHHHHc------cC-Cc---EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           81 RMHKVSDGQRRRVQICMGLL------KP-FK---VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~------~~-p~---lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      ++.++|.|.|+.+.|+..+.      .+ +.   ++++|||-+.|.|..++.+++.|.+++...+..||++||....
T Consensus       338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            45679999999888877653      12 22   9999999999999999999999999987568999999998754

>PF00488 MutS_V: MutS domain V C-terminus

Probab=97.92  E-value=0.00029  Score=61.74  Aligned_cols=50  Identities=20%  Similarity=0.181  Sum_probs=35.9

Q ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCChhHHh
Q 024989          100 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGLE  149 (259)
Q Consensus       100 ~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~-~g~tiii~sH~~~~~~  149 (259)
                      +.+..++|+||+..|=++.....+...+.+...+ .+..+|++||+.+...
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            4567799999999999999888766555454444 4888999999987543

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.92  E-value=2.4e-05  Score=75.83  Aligned_cols=58  Identities=19%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             cCCcEEEEeC---CCCCCCHHH--HHHHHHHHHHHHHhcCcEEEEEeCChh---------HHhccCCeEEEEe
Q 024989          101 KPFKVLLLDE---ITVDLDVLA--RADLLRFLRKECEERGATIIYATHIFD---------GLENWPSHIVYVA  159 (259)
Q Consensus       101 ~~p~lllLDE---Pt~gLD~~~--~~~~~~~l~~~~~~~g~tiii~sH~~~---------~~~~~~drv~~l~  159 (259)
                      .+|+.+++|=   |++++|...  +..+.++++.+. +.|.|+|+++|...         ..+.+||.|+.|+
T Consensus       129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk-~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~  200 (509)
T PRK09302        129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLK-QKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR  200 (509)
T ss_pred             hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHH-hCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence            5899999994   445677665  667777777664 57999999999864         2356899999987

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.87  E-value=8e-06  Score=77.92  Aligned_cols=31  Identities=13%  Similarity=0.136  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCCCccccC-------Cce-EEEEcCeec
Q 024989            3 EPEMVKVLGRSAFHDTALT-------SSG-DLSYLGGEW   33 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-------~~G-~I~~~G~~~   33 (259)
                      +||+++|+||||||||||+       ++| +|.++|.+.
T Consensus        31 ~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~   69 (504)
T TIGR03238        31 SSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHS   69 (504)
T ss_pred             CCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEEC
Confidence            7999999999999999993       566 799999764

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=97.82  E-value=2.8e-05  Score=79.91  Aligned_cols=70  Identities=24%  Similarity=0.206  Sum_probs=57.0

Q ss_pred             HHHHHccCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc--cCCeEEEEeCCeEEE
Q 024989           95 ICMGLLKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLEN--WPSHIVYVAHGKLQL  165 (259)
Q Consensus        95 ia~al~~~p~lllLDEPt~gL-D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~--~~drv~~l~~G~i~~  165 (259)
                      |++++..+|+++++|||+.+| |+..+..+.++++.+.+ .|.+++++||+++.+..  +++.++-....+|..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~L  752 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANSGILDVIVESTATKIFL  752 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence            677888999999999999999 79999999999998765 68899999999999876  344444444455553

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.80  E-value=0.00016  Score=68.88  Aligned_cols=62  Identities=16%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             EeCC--CCCCCHHHHHHHHHHHHHHHHhcCc-------EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989          108 LDEI--TVDLDVLARADLLRFLRKECEERGA-------TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       108 LDEP--t~gLD~~~~~~~~~~l~~~~~~~g~-------tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      +.||  +.|+||.....+.+++.+.. ..+.       ||++.+||+  .+.+||++..+.+|.|+.+...++.
T Consensus       276 ~ge~P~~~Gypp~~~~~l~~l~ERag-~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       276 AGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             cCCCCcccccChhHHHHHHHHHHHhc-cCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence            4554  56999999999999998865 3467       899999998  4678999999999999998877654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>COG4637 Predicted ATPase [General function prediction only]

Probab=97.77  E-value=0.00012  Score=66.27  Aligned_cols=78  Identities=28%  Similarity=0.338  Sum_probs=66.7

Q ss_pred             CcCCHHHHHHHHHHHHHcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989           83 HKVSDGQRRRVQICMGLLK--PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      ..||-|+.+-+++|.+|+.  .|.+++||||-++|-|..-..+..++++.++ .+ -||++||-...+..+--+-++.-+
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak-~s-Qv~VsTHS~rLl~~~e~~~v~~~~  346 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAK-RS-QVIVSTHSPRLLNAVEEHSVFWLD  346 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhc-cc-eEEEEeCCHHHHhhccccceEEec
Confidence            4899999999999999986  4899999999999999999999999998764 34 799999999998887766555444


Q ss_pred             Ce
Q 024989          161 GK  162 (259)
Q Consensus       161 G~  162 (259)
                      +.
T Consensus       347 ~~  348 (373)
T COG4637         347 RE  348 (373)
T ss_pred             cc
Confidence            43

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.76  E-value=4.4e-05  Score=76.22  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=46.8

Q ss_pred             cCCcCCHHHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHH
Q 024989           81 RMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++..|||||+|-++||..++.      +.++ |+|||++.||+..+..+.. ++...    +.-||+.|||-+.-
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~  617 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVD  617 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhC
Confidence            457899999999876665542      3556 5699999999999999875 65543    34688888886543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.75  E-value=7.6e-05  Score=71.78  Aligned_cols=122  Identities=14%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHH---hccCCCC----HHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI---FGVAGID----PQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~---~~~~~~~----~~~   66 (259)
                      +|.+++++||||+||||+.         ..|.         .+++++..+..   ..++.+.+   ....+.+    ...
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~---------~kV~LI~~Dt~---RigA~EQLr~~AeilGVpv~~~~~~  322 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA---------SKVALLTTDSY---RIGGHEQLRIYGKILGVPVHAVKDA  322 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC---------CeEEEEeCCcc---chhHHHHHHHHHHHhCCCeeccCCc
Confidence            5789999999999999984         2221         25777766541   23333322   1111211    112


Q ss_pred             HHHHHHHcCCCc--cccCCcCCHHHHH-HHHHHHHHccCC-----cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           67 RAELIKVLDIDL--SWRMHKVSDGQRR-RVQICMGLLKPF-----KVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        67 ~~~~l~~~~l~~--~~~~~~LSgG~~q-rv~ia~al~~~p-----~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                      .+......++..  ...+.+...+++- .+.-..+++.++     .+|+||.++.+-+      +.+.++.+.. .+.+-
T Consensus       323 ~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~------l~~i~~~f~~-~~~~g  395 (484)
T PRK06995        323 ADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT------LNEVVQAYRG-PGLAG  395 (484)
T ss_pred             hhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH------HHHHHHHhcc-CCCCE
Confidence            223334444431  2345554333322 223344444444     6899999988833      4555555443 46665


Q ss_pred             EEEeC
Q 024989          139 IYATH  143 (259)
Q Consensus       139 ii~sH  143 (259)
                      +|.|+
T Consensus       396 ~IlTK  400 (484)
T PRK06995        396 CILTK  400 (484)
T ss_pred             EEEeC
Confidence            66666

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.72  E-value=5.9e-05  Score=74.86  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=36.6

Q ss_pred             HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      ..+.++..++.  ....+.++|||                +|+||| +..||+..+..+++.|.+
T Consensus       244 a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       244 ARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            34456667764  34567889999                999999 899999999999998864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.69  E-value=0.00025  Score=61.63  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             cCCcEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989          101 KPFKVLLLDEITVDL-------DV-LARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus       101 ~~p~lllLDEPt~gL-------D~-~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      .+|+++++| +...+       |. .....+.+.|++++++.|.+||+++|--
T Consensus       122 ~~~~~vvID-~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~  173 (242)
T cd00984         122 HGLGLIVID-YLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLS  173 (242)
T ss_pred             cCCCEEEEc-CchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccC
Confidence            489999999 43333       11 2344677888888888899999999854

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.68  E-value=3.7e-05  Score=73.36  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHHhcCcEEEEEe-CChhHHhccCCeEE-EEeCCeEEEecChh
Q 024989          101 KPFKVLLLDEITVDLDVL-ARADLLRFLRKECEERGATIIYAT-HIFDGLENWPSHIV-YVAHGKLQLAMPMD  170 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~-~~~~~~~~l~~~~~~~g~tiii~s-H~~~~~~~~~drv~-~l~~G~i~~~g~~~  170 (259)
                      .+|++||+|||...+|.. .+..++..+..+.. .|+.||++| |+..++..+.+|+. =+..|-++...+++
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd  264 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence            479999999999988765 45678888887765 577777766 88888877777765 35667666655554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.67  E-value=9.6e-05  Score=57.42  Aligned_cols=56  Identities=25%  Similarity=0.143  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChh
Q 024989           90 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFD  146 (259)
Q Consensus        90 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~----~~g~tiii~sH~~~  146 (259)
                      .+......+...++.++++||.-.. ++.....+.+.+.....    ..+.++|++++...
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556667777889999999998765 56666777888877542    24788899988754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.67  E-value=5.2e-05  Score=64.57  Aligned_cols=59  Identities=15%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             CCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHHhcCcEEEEEeCChh-------------HHhccCCeEEEE
Q 024989          102 PFKVLLLDEITVDLDVL----------ARADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHIVYV  158 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~----------~~~~~~~~l~~~~~~~g~tiii~sH~~~-------------~~~~~~drv~~l  158 (259)
                      +|+++++|--++-....          ....+...|.+++++.|.|+|+++|-..             .+..++|-++.|
T Consensus        97 ~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~~~~~d~vi~l  176 (209)
T TIGR02237        97 SASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLLEHWSKVILRL  176 (209)
T ss_pred             CccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchhheeeeEEEEE
Confidence            69999999766432111          1122334566777788999999988432             245666766666


Q ss_pred             eC
Q 024989          159 AH  160 (259)
Q Consensus       159 ~~  160 (259)
                      +.
T Consensus       177 ~~  178 (209)
T TIGR02237       177 EK  178 (209)
T ss_pred             Ee
Confidence            54

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.67  E-value=3.2e-05  Score=66.88  Aligned_cols=45  Identities=24%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             CCcEEEEeCCCCCC----C-H---HHH----HHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989          102 PFKVLLLDEITVDL----D-V---LAR----ADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus       102 ~p~lllLDEPt~gL----D-~---~~~----~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +++++++|--++-+    + .   ..+    ..+...|+.++++.+.+||++.|-..
T Consensus       115 ~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~  171 (235)
T cd01123         115 RIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA  171 (235)
T ss_pred             CeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence            78999999877521    1 1   122    34566777777788999999987643

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.66  E-value=0.00071  Score=58.09  Aligned_cols=48  Identities=8%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             cCCcEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989          101 KPFKVLLLDEITVDLD--------VLA----RADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD--------~~~----~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      .+++++++|--++-.-        ...    ...+...|+.++++.+.+||++.|-....
T Consensus       113 ~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~  172 (226)
T cd01393         113 GRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKV  172 (226)
T ss_pred             CCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeec
Confidence            4889999996544211        111    23355667778788899999999865443

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=97.65  E-value=4.4e-05  Score=78.21  Aligned_cols=65  Identities=20%  Similarity=0.099  Sum_probs=39.7

Q ss_pred             cCCHHHHHHHHHHHHH--ccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHH
Q 024989           84 KVSDGQRRRVQICMGL--LKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al--~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      .+|.=|-....++..|  +.++.++|+||+-.|-|+..-..+.. ++..+.+..|..++++||+.+..
T Consensus       651 g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~  718 (840)
T TIGR01070       651 GRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT  718 (840)
T ss_pred             CcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence            3344334444444444  46889999999966666555555333 33333332578899999997643

>PRK04328 hypothetical protein; Provisional

Probab=97.64  E-value=0.00021  Score=63.12  Aligned_cols=58  Identities=16%  Similarity=0.228  Sum_probs=36.2

Q ss_pred             CCcEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEe
Q 024989          102 PFKVLLLDEITV--DLDVLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA  159 (259)
Q Consensus       102 ~p~lllLDEPt~--gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~  159 (259)
                      +|+++++|=-|+  --|+...+.+...|....++.|+|+|+++|-..        .++.+||-|+.|+
T Consensus       128 ~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~~~~~~~~~~~~D~vI~L~  195 (249)
T PRK04328        128 GAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVSVGERGFGGPGVEHAVDGIIRLD  195 (249)
T ss_pred             CCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECccccccccCCCCcEEEEEEEEEEE
Confidence            799999995542  124443344444444444567999999987541        2455677777775

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.62  E-value=0.00011  Score=69.15  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=43.7

Q ss_pred             HHHHccCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989           96 CMGLLKPFKVLLLDE----------ITVDLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus        96 a~al~~~p~lllLDE----------Pt~gLD~~~~~~~~~~l~~~~---~~~g~tiii~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      ..|....|.++++||          +.++.|...++.+.+++..+-   ...+..||++||..+.+...     +++.|+
T Consensus       232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA-----llR~GR  306 (398)
T PTZ00454        232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA-----LLRPGR  306 (398)
T ss_pred             HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH-----HcCCCc
Confidence            344557899999999          456778877777778776652   12367899999988765441     345565


Q ss_pred             E
Q 024989          163 L  163 (259)
Q Consensus       163 i  163 (259)
                      +
T Consensus       307 f  307 (398)
T PTZ00454        307 L  307 (398)
T ss_pred             c
Confidence            4

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.57  E-value=4.4e-05  Score=65.90  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=41.2

Q ss_pred             cCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCC--------hhHHhc-cCCeEEEEeC
Q 024989          101 KPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHI--------FDGLEN-WPSHIVYVAH  160 (259)
Q Consensus       101 ~~p~lllLDEPt~gL----D~~~~~~~~~~l~~~~~~~g~tiii~sH~--------~~~~~~-~~drv~~l~~  160 (259)
                      .+|+.+++|- .+.|    |+...+.++..+....++.|.|+|+++|.        ...+.. +||-|+.|+.
T Consensus       114 ~~~~~vVIDs-ls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~~~~~~~i~~~l~D~vI~L~~  185 (226)
T PF06745_consen  114 LKPDRVVIDS-LSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEMPSGSEDDGTFGIEHYLADGVIELRY  185 (226)
T ss_dssp             HTSSEEEEET-HHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEESSSSSSSSSTSHHHHHSSEEEEEEE
T ss_pred             cCCCEEEEEC-HHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEccccCcccccccchhhhcccEEEEEEE
Confidence            4679999994 4444    66666655555555556789999999882        234556 8999998863

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PTZ00035 Rad51 protein; Provisional

Probab=97.56  E-value=0.00023  Score=65.70  Aligned_cols=46  Identities=22%  Similarity=0.425  Sum_probs=31.1

Q ss_pred             cCCcEEEEeCCCCCCC--------HHHHH----HHHHHHHHHHHhcCcEEEEEeCChh
Q 024989          101 KPFKVLLLDEITVDLD--------VLARA----DLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD--------~~~~~----~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      .+++++++|=-++-.-        ...++    ++...|++++++.|.|||++-|-..
T Consensus       212 ~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~  269 (337)
T PTZ00035        212 ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMA  269 (337)
T ss_pred             cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEE
Confidence            4689999998776322        22222    3556667777778999999987544

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.55  E-value=0.00061  Score=56.95  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=27.2

Q ss_pred             cCCcEEEEeCCCCCC----CH-HHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989          101 KPFKVLLLDEITVDL----DV-LARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus       101 ~~p~lllLDEPt~gL----D~-~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+|+++++|=-++-.    +. .....+++.|++++++.|.+|+++.|-
T Consensus       140 ~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  188 (193)
T PF13481_consen  140 YGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT  188 (193)
T ss_dssp             ---SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred             CCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            479999999443322    21 223578899999988889999999884

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.54  E-value=0.0001  Score=63.62  Aligned_cols=60  Identities=18%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             cCCcEEEEeCCCCCC--------CHHHH----HHHHHHHHHHHHhcCcEEEEEeCChh-------------HHhccCCeE
Q 024989          101 KPFKVLLLDEITVDL--------DVLAR----ADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHI  155 (259)
Q Consensus       101 ~~p~lllLDEPt~gL--------D~~~~----~~~~~~l~~~~~~~g~tiii~sH~~~-------------~~~~~~drv  155 (259)
                      .+++++++|--++-.        |...+    ..++..|.+++++.|.|||+++|-..             .+..+||-+
T Consensus       106 ~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~i  185 (225)
T PRK09361        106 ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKTI  185 (225)
T ss_pred             hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccEE
Confidence            799999999875322        22221    22233466677788999999988543             345567777


Q ss_pred             EEEeC
Q 024989          156 VYVAH  160 (259)
Q Consensus       156 ~~l~~  160 (259)
                      +.|+.
T Consensus       186 i~l~~  190 (225)
T PRK09361        186 LRLEK  190 (225)
T ss_pred             EEEEE
Confidence            76654

>PRK13764 ATPase; Provisional

Probab=97.53  E-value=0.00031  Score=69.23  Aligned_cols=57  Identities=14%  Similarity=0.274  Sum_probs=45.4

Q ss_pred             HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC---------------ChhHHhccCCeEEEEeCCeE
Q 024989           99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH---------------IFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus        99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH---------------~~~~~~~~~drv~~l~~G~i  163 (259)
                      |..+|+++++||.=..-|       ++++..++. .|..++-+-|               ++..+..+||+|+++++|++
T Consensus       321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I  392 (602)
T PRK13764        321 LLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV  392 (602)
T ss_pred             HhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence            778999999999985332       344433332 4778899999               99999999999999999999

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.50  E-value=0.00049  Score=60.10  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=37.9

Q ss_pred             cCCcEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHhccCCeEEEEe
Q 024989          101 KPFKVLLLDEITV--DLDVLARADLLRFLRKECEERGATIIYATHIF--------DGLENWPSHIVYVA  159 (259)
Q Consensus       101 ~~p~lllLDEPt~--gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~--------~~~~~~~drv~~l~  159 (259)
                      .+++.+++|=-++  -.|+...+.+...+..+.++.|.|+|+++|--        ..++.+||-|+.|+
T Consensus       125 ~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~~~~~~~~~~~D~vI~L~  193 (237)
T TIGR03877       125 INAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVSVGERGFGGPGVEHAVDGIIRLD  193 (237)
T ss_pred             hCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccccccccceEEEEeEEEEEE
Confidence            3799999996554  34554444444445555567899999998732        12455677777775

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd01394 radB RadB

Probab=97.49  E-value=0.0004  Score=59.51  Aligned_cols=61  Identities=16%  Similarity=0.330  Sum_probs=39.7

Q ss_pred             cCCcEEEEeCCCCCC----C-----HHHH---HHHHHHHHHHHHhcCcEEEEEeCChh-------------HHhccCCeE
Q 024989          101 KPFKVLLLDEITVDL----D-----VLAR---ADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHI  155 (259)
Q Consensus       101 ~~p~lllLDEPt~gL----D-----~~~~---~~~~~~l~~~~~~~g~tiii~sH~~~-------------~~~~~~drv  155 (259)
                      .+++++++|-.++-.    +     ....   ..+...|+.++++.+.|||+++|-..             .+..++|.+
T Consensus       102 ~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~  181 (218)
T cd01394         102 EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVI  181 (218)
T ss_pred             cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEE
Confidence            359999999766532    1     1111   22334466777788999999999532             346677877


Q ss_pred             EEEeCC
Q 024989          156 VYVAHG  161 (259)
Q Consensus       156 ~~l~~G  161 (259)
                      +.|+..
T Consensus       182 i~l~~~  187 (218)
T cd01394         182 LRLEKL  187 (218)
T ss_pred             EEEEEc
Confidence            877754

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.48  E-value=3.1e-05  Score=53.81  Aligned_cols=19  Identities=11%  Similarity=0.197  Sum_probs=17.2

Q ss_pred             CcEEEEEcCCCCCccccCC
Q 024989            4 PEMVKVLGRSAFHDTALTS   22 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~~   22 (259)
                      |+++.|.||||||||||.|
T Consensus        23 g~~tli~G~nGsGKSTllD   41 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLD   41 (62)
T ss_pred             CcEEEEECCCCCCHHHHHH
Confidence            5789999999999999965

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.47  E-value=0.00017  Score=76.58  Aligned_cols=72  Identities=19%  Similarity=0.349  Sum_probs=62.6

Q ss_pred             CCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEE
Q 024989           82 MHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  156 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~  156 (259)
                      +..||||||--++||..|+    ...++++|||-=++||..+...+.++|++..  .+.=.|+|||.-..... ||+++
T Consensus      1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~-ad~l~ 1139 (1163)
T COG1196        1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEA-ADRLV 1139 (1163)
T ss_pred             hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHH-HHHHe
Confidence            5679999999999998875    5679999999999999999999999999986  47789999999776554 78755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-13
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	9e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-10
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-10
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-10
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-09
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	6e-05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-04
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	2e-04

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 62  IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 119
           ++PQ + +++K L ID  +   +  +S G+ +RV I + L  P  + L+DE +  LD   
Sbjct: 443 LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502

Query: 120 RADLLRFLRKECEERGATIIYATH 143
           R    + +R+       T     H
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEH 526

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 36  EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV 93
            V   G      + +  EK          +     IK+L ++  L   + K+S G+ +R 
Sbjct: 183 PVQKVGE----LLKLRMEKSP--------EDVKRYIKILQLENVLKRDIEKLSGGELQRF 230

Query: 94  QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
            I M  ++   V + DE +  LDV  R +  + +R         +I   H
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR-SLLAPTKYVICVEH 279

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 56  IFGVAGIDPQRRAELIKVLDI-DLSWRMHKVSDGQRRRVQICMGLL-KPFKVLLLDEITV 113
           ++GV   +     + ++ +++ DL  ++ ++S G  RRVQ+   LL    ++ +LD+  V
Sbjct: 105 LYGVKV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNA-EIYVLDDPVV 162

Query: 114 DLDVLARADLLRFLRKECEERGATIIYATHI 144
            +D  ++  +L+ + +  +E+G  II +   
Sbjct: 163 AIDEDSKHKVLKSILEILKEKGIVIISSREE 193

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 61  GIDPQRRAELIK-VLDI-DLSWRMHKV----SDGQRRRVQICMGLLKPFKVLLLDEITVD 114
                   E+++   +I  L  ++       S G  R++ I   L+   ++ +LDE T  
Sbjct: 117 ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSG 176

Query: 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           LDVL   ++ + L++  +E G TI+ ++H    +E     I  + +G +
Sbjct: 177 LDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTI 224

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
            +  E++K L+++  L   +H++S G+ +RV I   LL+       DE +  LD+  R  
Sbjct: 207 GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266

Query: 123 LLRFLRKECEERGATIIYATH---IFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
           + R +R      G  ++   H   + D L +     ++V +G+     P      +    
Sbjct: 267 VARVIR-RLANEGKAVLVVEHDLAVLDYLSDV----IHVVYGE-----PGVYGIFSKPKG 316

Query: 180 LMRTVESWLRKERDEERKRRRERKASGLP 208
               +  +L+    +E  R R  +     
Sbjct: 317 TRNGINEFLQGYLKDENVRFRPYEIRFTK 345

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 63  DPQRRAELIKVLDID-LSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
               + EL+K L I  L  R +  +S G+ +RV I   LL+   + LLDE +  LDV  R
Sbjct: 448 SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507

Query: 121 ADLLRFLRKECEERGATIIYATH 143
             + R +R   E+   T +   H
Sbjct: 508 LAVSRAIRHLMEKNEKTALVVEH 530

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 63  DPQRRAELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
                 E+ K L++  L    ++ +S G+ +++ I   L K   + +LD+ +  LDV  R
Sbjct: 362 SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421

Query: 121 ADLLRFLRKECEERGATIIYATH 143
             + + +++   ER A      H
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDH 444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
            ++ E+ ++L++    +   + +S G  +R+ +   LL+   V + D+ +  LDV  R +
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176

Query: 123 LLRFLRKECEERGATIIYATH 143
           + + +R+  + +   +I   H
Sbjct: 177 MAKAIRELLKNK--YVIVVDH 195

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 63  DPQRRAELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
                 +L+K++ +   + + +  +S G+++RV I   L+   +VL+LDE    LD +AR
Sbjct: 138 IRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197

Query: 121 ADLLRFLRKECEE-RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
             LL  L    +      +IY TH  + +    S I+ +  G+      ++ +  +  +S
Sbjct: 198 ESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMS 257

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
            +  E++K L+++  L   +  +S G+ +RV I   LL+       DE +  LD+  R +
Sbjct: 137 GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196

Query: 123 LLRFLRKECEERGATIIYATH 143
             R +R    E G +++   H
Sbjct: 197 AARAIR-RLSEEGKSVLVVEH 216

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 63  DPQRRAELIKVLDID-LSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
               + EL+K L I  L  R ++++S G+ +RV I   LL+   + LLDE +  LDV  R
Sbjct: 378 SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437

Query: 121 ADLLRFLRKECEERGATIIYATH 143
             + R +R   E+   T +   H
Sbjct: 438 LAVSRAIRHLMEKNEKTALVVEH 460

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 83  HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
           H +S GQ++RV I  G+L  +P KVL+LDE T  LD +  +++++ L +  +E G TII 
Sbjct: 142 HCLSFGQKKRVAIA-GVLVMEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199

Query: 141 ATHIFDGLENWPSHIVYVAHGKL 163
           ATH  D +  +  ++  +  G++
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRV 222

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%)

Query: 45  PIQMDVSAEKMIFG--VAGIDPQRRAELIKVLDID--LSWRM-HKVSDGQRRRVQICMGL 99
            I + V  + +     + G+D     E++K L +   +  R  +K+S GQ   V+  + L
Sbjct: 85  EIGVTV-NDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143

Query: 100 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159
               +++ LDE   ++D   R  + R+++    E G   I  TH  D L  +  +  Y  
Sbjct: 144 ASQPEIVGLDEPFENVDAARRHVISRYIK----EYGKEGILVTHELDMLNLYKEYKAYFL 199

Query: 160 HGKL--QLAMPMD 170
            G          +
Sbjct: 200 VGNRLQGPISVSE 212

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 83  HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140
             +S G++RRV I   ++  +P  +L+LDE  V LD   + DLLR + K  +  G T+I 
Sbjct: 137 FFLSGGEKRRVAIA-SVIVHEP-DILILDEPLVGLDREGKTDLLRIVEK-WKTLGKTVIL 193

Query: 141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRR 200
            +H  + + N    +V +  GK         V + +++  +   +      +    +R  
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKK--------VFDGTRMEFLEKYDPRFFTSKMLVMRRLV 245

Query: 201 ERKASGLP 208
            +      
Sbjct: 246 LKGEDPFS 253

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 75  DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134
           +I    R+  +S GQ+ ++ +  G  +   +++LDE T  LD  +   L + L+    E 
Sbjct: 892 EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK----EF 947

Query: 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
              +I  TH  +  +N    +  V  G++ 
Sbjct: 948 EGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 63  DPQRRAELIKVL------DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 116
               +  +   L      D  ++  +  +S G + ++ +   +L+   +LLLDE T  LD
Sbjct: 521 GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580

Query: 117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
            +  A L+ +L       G T I  +H    L+N   +I+     KL
Sbjct: 581 TVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKL 623

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           S GQR+ + I   +    K++LLDE T  LD+  +  +L  L    + +  T+++ TH
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 48  MDVSAEKMIFGVAGIDP----QRRAELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLK 101
           + V    + +G+  ++     +R  E+ + L I  L  R   ++S G+R+RV +   L+ 
Sbjct: 85  LSV-YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143

Query: 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
             ++LLLDE    +D+  +  L+  LR    E    I++ TH
Sbjct: 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 63  DPQRRAELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLL-------KPFKVLLLDEITV 113
             +   ++   L + D   R  +++S G+ +RV++   +L          ++LLLDE   
Sbjct: 103 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162

Query: 114 DLDVLARADLLRFLRKECEERGATIIYATH 143
            LDV  ++ L + L    ++ G  I+ ++H
Sbjct: 163 SLDVAQQSALDKILSALSQQ-GLAIVMSSH 191

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 55  MIF-GVAGIDPQRRAEL-IKVLD-IDLSWRM--HK---VSDGQRRRVQICMGLLKPFKVL 106
           +IF     +  + R +  ++ L   +L  R   HK   +S GQ++RV I   L     ++
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167

Query: 107 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143
           L D+ T  LD      +++ L+K  EE G T++  TH
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 86  SDGQRRRVQICM------GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139
           S G+R  + +         L     +L+LDE T  LD   R  L+  +     ++   +I
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME-RYLKKIPQVI 308

Query: 140 YATHIFDGLENWPSHIVYV 158
             +H  + L++   H++ +
Sbjct: 309 LVSHD-EELKDAADHVIRI 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.98
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.97
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.97
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.97
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.97
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.96
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.95
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.95
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.92
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.91
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.9
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.9
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.86
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.85
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.85
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.83
2og2_A	359	Putative signal recognition particle receptor; nuc	99.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.81
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.79
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.78
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.77
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.77
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.77
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.77
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.76
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.76
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.75
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.75
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.75
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.74
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.74
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.74
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.73
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.72
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.72
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.68
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.67
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.67
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.66
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.66
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.65
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.63
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.63
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.62
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.62
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.59
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.56
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.55
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.53
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.52
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.4
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.37
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.35
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.32
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.32
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.29
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.27
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.22
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.18
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.17
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.15
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.12
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.12
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.06
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.04
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.99
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.99
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.96
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.96
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.94
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.92
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.88
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.86
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.85
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.84
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.8
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.78
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.71
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.56
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.55
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.52
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.36
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.35
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.34
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.34
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.32
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.31
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.3
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.27
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.27
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.23
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.17
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.13
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.06
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.03
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.95
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.85
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.83
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.83
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.8
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.77
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.72
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.68
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.67
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.67
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.66
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.59
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.48
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.47
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.46
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.45
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.45
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.29
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.26
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.24
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.23
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.22
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.16
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.16
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.13
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.08
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.98
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.86
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.85
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.85
3io5_A	333	Recombination and repair protein; storage dimer, i	96.84
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.84
3bos_A	242	Putative DNA replication factor; P-loop containing	96.81
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.74
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.73
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.72
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.72
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.65
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.64
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.62
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.62
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.62
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.62
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.54
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.48
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.45
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.45
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.43
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.43
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.41
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.38
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.34
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.31
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.29
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.29
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.19
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.17
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.99
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.87
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.83
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.79
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.77
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.77
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.76
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.71
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.71
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.71
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.69
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.68
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.66
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.62
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.61
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.55
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.51
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.5
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.48
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.47
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.46
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.45
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.37
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.34
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.34
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.31
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.3
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.23
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.2
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.17
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.15
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.09
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.07
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.06
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.0
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.98
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.95
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.93
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.9
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.87
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.73
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.71
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.63
1via_A	175	Shikimate kinase; structural genomics, transferase	94.58
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.55
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.55
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.53
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.49
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.45
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.41
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.39
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.27
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.19
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.14
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.06
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.01
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.01
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.85
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.76
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.76
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.71
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.7
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.67
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.63
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.63
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	93.56
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.55
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.55
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.54
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.54
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.51
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.46
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.45
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.28
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.25
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.16
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.14
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.12
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.1
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.08
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	92.76
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	92.6
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.58
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	92.58
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.58
3ice_A	422	Transcription termination factor RHO; transcriptio	92.3
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	92.26
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	92.2
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	92.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	92.09
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	91.97
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	91.94
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	91.83
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.81
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	91.8
2ged_A	193	SR-beta, signal recognition particle receptor beta	91.79
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.7
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	91.7
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	91.64
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	91.6
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	91.59
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	91.56
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.55
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.45
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	91.38
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.35
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	91.33
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.29
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	91.28
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	91.25
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	91.25
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.2
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.18
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.15
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	91.15
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.14
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.12
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	91.06
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.02
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.02
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	91.02
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	90.99
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	90.97
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	90.89
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	90.78
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.76
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	90.72
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	90.66
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.61
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	90.59
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	90.53
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	90.45
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	90.41
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.39
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	90.38
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	90.36
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	90.32
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.31
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.23
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	90.22
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.2
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	90.14
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	90.13
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	90.12
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	90.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.1
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.03
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	90.01
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	89.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	89.89
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	89.88
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	89.86
1nrj_B	218	SR-beta, signal recognition particle receptor beta	89.8
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	89.79
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	89.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	89.75
2hf9_A	226	Probable hydrogenase nickel incorporation protein	89.75
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	89.72
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	89.66
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	89.64
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	89.61
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	89.59
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	89.54
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	89.47
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	89.39
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	89.37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	89.21
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.19
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	89.15
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	89.12
2chg_A	226	Replication factor C small subunit; DNA-binding pr	89.1
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	89.09
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	89.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	89.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	88.84
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	88.8
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	88.77
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	88.77
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	88.71
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	88.71
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	88.7
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	88.66
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	88.65
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	88.65
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	88.64
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	88.64
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	88.55
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	88.52
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	88.41
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	88.38
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	88.35
2fh5_B	214	SR-beta, signal recognition particle receptor beta	88.31
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	88.28
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.28
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	88.27
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	88.22
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	88.18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	88.1
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	88.1
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	88.09
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	88.09
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	88.07
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	88.04
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	88.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.02
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	88.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	87.85
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	87.8
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	87.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	87.78
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	87.72
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	87.7
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	87.65
3llu_A	196	RAS-related GTP-binding protein C; structural geno	87.62
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	87.61
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	87.48
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	87.47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.35
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	87.42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	87.4
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	87.39
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	87.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	87.26
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.23
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	87.0
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	86.88
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	86.8
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	86.67
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	86.55
2fna_A	357	Conserved hypothetical protein; structural genomic	86.52
3co5_A	143	Putative two-component system transcriptional RES	86.5
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	86.46
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	86.25
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	86.17
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	86.11
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	86.11
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	86.07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	86.05
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	85.94
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	85.79
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	85.7
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	85.58
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	85.55
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	85.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	85.52
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	85.52
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	85.4
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	85.39
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	85.31
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	85.31
2qgz_A	308	Helicase loader, putative primosome component; str	85.28

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1.6e-45  Score=338.85  Aligned_cols=174  Identities=22%  Similarity=0.272  Sum_probs=155.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|+++           ++.+||++|++.+++.+|+.+++. +  .
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~  132 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  132 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence            799999999999999999         5899999999864           356999999999999999987552 2  2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus       133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~  212 (366)
T 3tui_C          133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR  212 (366)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence            33332    3467899999996  47889999999999999999999999999999999999999999999999999877


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .|+|||+||||++++..+||||++|++|++++.|+++++....
T Consensus       213 ~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p  255 (366)
T 3tui_C          213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP  255 (366)
T ss_dssp             SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred             CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            7999999999999999999999999999999999999987643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.1e-45  Score=336.53  Aligned_cols=174  Identities=19%  Similarity=0.287  Sum_probs=155.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-hccC--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-FGVA--   60 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~~~~--   60 (259)
                      +||+++|+||||||||||         +++|+|.++|+++          ++.+||++|+..+|+.+|+.+++ +++.  
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~  108 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG  108 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence            699999999999999999         5899999999865          35699999999999999998765 3332  


Q ss_pred             CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      +..    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|.++.++.
T Consensus       109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~  188 (359)
T 3fvq_A          109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN  188 (359)
T ss_dssp             SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            222    24567899999996  478899999999999999999999999999999999999999999999888887777


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |+|||+||||++++..+||||++|++|+++..|+++++....
T Consensus       189 g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p  230 (359)
T 3fvq_A          189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP  230 (359)
T ss_dssp             TCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence            999999999999999999999999999999999999987643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=7.4e-45  Score=323.55  Aligned_cols=173  Identities=25%  Similarity=0.313  Sum_probs=149.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHH-hc--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMI-FG--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~-~~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.+||++|++. .+..+|+.+++ ++  .
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~  112 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN  112 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH
Confidence            799999999999999999         5899999999865          346999999863 33467887654 32  2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~  192 (275)
T 3gfo_A          113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE  192 (275)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence            33332    3467889999986  47789999999999999999999999999999999999999999999999998734


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|+|||+||||++++..+||||++|++|++++.|+++++...
T Consensus       193 ~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          193 LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            599999999999999999999999999999999999998754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1e-44  Score=335.31  Aligned_cols=174  Identities=26%  Similarity=0.295  Sum_probs=156.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.+||++|++.+|+.+|+.+++. +  ..+.+.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~  107 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK  107 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence            699999999999999999         5899999999865      356999999999999999987653 2  233443


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|+||
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ti  187 (381)
T 3rlf_A          108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM  187 (381)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence                3567899999986  5788999999999999999999999999999999999999999999999999987679999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+||||++|++|+++..|+++++....
T Consensus       188 i~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p  225 (381)
T 3rlf_A          188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP  225 (381)
T ss_dssp             EEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             EEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence            99999999999999999999999999999999987643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=7.3e-45  Score=316.59  Aligned_cols=170  Identities=21%  Similarity=0.331  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++.++|++|++.+++.+|+.+++. +  
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~  109 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI  109 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHH
Confidence            799999999999999999         5899999999764            135999999999999999987542 2  


Q ss_pred             cC---CCCH----HHHHHHHHHcCCC--c-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           59 VA---GIDP----QRRAELIKVLDID--L-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        59 ~~---~~~~----~~~~~~l~~~~l~--~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      ..   ....    +++.++++.+++.  . ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~  189 (235)
T 3tif_A          110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK  189 (235)
T ss_dssp             TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11   2232    3456788889985  2 67899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      +++++.|+|||+||||++.+ .+||||++|++|+++..++++++.
T Consensus       190 ~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          190 KLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             HHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred             HHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence            98765699999999999965 789999999999999998887754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.8e-44  Score=317.99  Aligned_cols=172  Identities=21%  Similarity=0.257  Sum_probs=151.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-hc---c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-FG---V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~~---~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++.+++.+|+.+++ ++   .
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~  128 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV  128 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence            799999999999999999         5899999999764          24599999998888899988754 22   2


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~  208 (263)
T 2olj_A          129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE  208 (263)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            33332    3467889999985  46789999999999999999999999999999999999999999999999998765


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                       |+|||++|||++++..+||++++|++|+++..|+++++...
T Consensus       209 -g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  249 (263)
T 2olj_A          209 -GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR  249 (263)
T ss_dssp             -TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             -CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence             99999999999999999999999999999999999988653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.2e-44  Score=319.12  Aligned_cols=172  Identities=25%  Similarity=0.314  Sum_probs=152.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC--C-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA--G-   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~-   61 (259)
                      +||+++|+||||||||||         +++|+|.++|+++        ++.++|++|++.+++.+|+.+++. +..  . 
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  115 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG  115 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence            699999999999999999         5899999999875        245999999988888899987653 321  1 


Q ss_pred             -CCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           62 -IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        62 -~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                       ...+++.++++.+++.  .++++.+|||||||||+|||||++      +|++|||||||+|||+.++..++++|+++++
T Consensus       116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~  195 (266)
T 4g1u_C          116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR  195 (266)
T ss_dssp             TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence             1235678899999985  467899999999999999999999      9999999999999999999999999999977


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +.|+|||+||||++++..+||||++|++|++++.|+++++..
T Consensus       196 ~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~  237 (266)
T 4g1u_C          196 QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN  237 (266)
T ss_dssp             HSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred             cCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence            657899999999999999999999999999999999998864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=5.6e-44  Score=315.74  Aligned_cols=172  Identities=22%  Similarity=0.323  Sum_probs=151.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------------------ccEEEecccCCCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------------------REVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------------------~~i~~v~~~~~~~~~lt~   52 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.                     +.++|++|++.+++.+|+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv  110 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV  110 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcH
Confidence            799999999999999999         58999999997642                     359999999888899998


Q ss_pred             HHHHh-c---cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989           53 EKMIF-G---VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  121 (259)
Q Consensus        53 ~~~~~-~---~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~  121 (259)
                      .+++. +   ..+.+.    +++.++++.+++.   .++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus       111 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~  190 (262)
T 1b0u_A          111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG  190 (262)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            87542 1   223332    3467889999985   36789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .++++|++++++ |+|||++|||++++..+||++++|++|+++..|+++++...
T Consensus       191 ~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  243 (262)
T 1b0u_A          191 EVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  243 (262)
T ss_dssp             HHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999998764 99999999999999999999999999999999999988653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5.1e-44  Score=328.20  Aligned_cols=173  Identities=25%  Similarity=0.355  Sum_probs=154.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hc--cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~--~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++      ++.++|++|+..+|+.+|+.+++ ++  ..+.+.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~  119 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK  119 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence            699999999999999999         5899999999864      45799999999999999998765 32  233332


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.|+||
T Consensus       120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  199 (355)
T 1z47_A          120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS  199 (355)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence                3567899999996  4788999999999999999999999999999999999999999999999999876669999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |++|||++++..+||||++|++|+++..|+++++...
T Consensus       200 i~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  236 (355)
T 1z47_A          200 VFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK  236 (355)
T ss_dssp             EEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999999998764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-44  Score=313.69  Aligned_cols=171  Identities=21%  Similarity=0.293  Sum_probs=150.6

Q ss_pred             cEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC--CCC--H
Q 024989            5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA--GID--P   64 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~~~--~   64 (259)
                      |+++|+||||||||||         +++|+|.++|.++      ++.++|++|++.+++.+|+.+++. +..  +..  .
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~  104 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence            9999999999999999         5899999999764      346999999988889999987653 221  111  2


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      +++.++++.+++.  .++++.+|||||||||+|||||+++|++|||||||+|||+.++..++++|++++++.|+|||++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt  184 (240)
T 2onk_A          105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT  184 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4567889999985  46789999999999999999999999999999999999999999999999998765699999999


Q ss_pred             CChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          143 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       143 H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ||++++..+||++++|++|+++..|+++++...
T Consensus       185 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  217 (240)
T 2onk_A          185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA  217 (240)
T ss_dssp             SCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999988653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=7.3e-44  Score=327.75  Aligned_cols=173  Identities=28%  Similarity=0.317  Sum_probs=154.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++ ++.  .+.+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  107 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK  107 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            699999999999999999         5899999999864      35699999999999999998765 333  22221


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.|+|+
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  187 (359)
T 2yyz_A          108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS  187 (359)
T ss_dssp             HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence                3567899999996  4788999999999999999999999999999999999999999999999999876669999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |++|||++++..+||||++|++|+++..|+++++...
T Consensus       188 i~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~  224 (359)
T 2yyz_A          188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS  224 (359)
T ss_dssp             EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=4.5e-44  Score=315.35  Aligned_cols=168  Identities=13%  Similarity=0.210  Sum_probs=148.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~----   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. +.    
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~  111 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG  111 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhc
Confidence            799999999999999999         5899999999764         235999999988888899987652 21    


Q ss_pred             CC-----------CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           60 AG-----------ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        60 ~~-----------~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                      .+           ..    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~  191 (257)
T 1g6h_A          112 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD  191 (257)
T ss_dssp             SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred             cCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence            12           12    23467889999985  477899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~  171 (259)
                      ++++|++++++ |+|||++|||++++..+||++++|++|+++..|++++
T Consensus       192 l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          192 IFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999998764 9999999999999999999999999999999999887

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-43  Score=312.30  Aligned_cols=171  Identities=20%  Similarity=0.286  Sum_probs=151.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++       ++.++|++|++.+++.+|+.+++. .  .++..
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~  119 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS  119 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence            799999999999999999         5899999999864       356999999998888899887542 1  22333


Q ss_pred             H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      .    +++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|+|
T Consensus       120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~t  198 (256)
T 1vpl_A          120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLT  198 (256)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred             hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCE
Confidence            2    3467889999986  4678999999999999999999999999999999999999999999999999865 5999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||++|||++++..+||++++|++|+++..|+++++.+
T Consensus       199 iiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             EEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             EEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            9999999999999999999999999999999988864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-43  Score=326.67  Aligned_cols=173  Identities=27%  Similarity=0.330  Sum_probs=154.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++ ++.  .+.+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  107 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR  107 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            699999999999999999         5899999999865      35699999999999999998765 332  23332


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.|+|+
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  187 (362)
T 2it1_A          108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT  187 (362)
T ss_dssp             HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence                3467899999986  4788999999999999999999999999999999999999999999999999876669999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |++|||++++..+||||++|++|+++..|+++++...
T Consensus       188 i~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~  224 (362)
T 2it1_A          188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK  224 (362)
T ss_dssp             EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.5e-43  Score=306.16  Aligned_cols=164  Identities=23%  Similarity=0.274  Sum_probs=143.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++.            +.++|++|++.+++.+|+.+++. +  
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  108 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML  108 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence            799999999999999999         58999999997641            45999999988888899887542 2  


Q ss_pred             cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+..    .+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~  188 (224)
T 2pcj_A          109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE  188 (224)
T ss_dssp             HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            22332    23467889999985  4678999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      + |+|||++|||++++ .+||++++|++|+++..|+
T Consensus       189 ~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          189 G-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             T-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             C-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            5 99999999999988 7999999999999998875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=7.2e-44  Score=327.35  Aligned_cols=173  Identities=23%  Similarity=0.281  Sum_probs=154.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHH-hcc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMI-FGV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~-~~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|+++           ++.++|++|+..+|+.+|+.+++ ++.  
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  109 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN  109 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence            699999999999999999         5899999999754           34699999999999999998765 333  


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++
T Consensus       110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  189 (353)
T 1oxx_K          110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR  189 (353)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence            23332    3467899999996  47889999999999999999999999999999999999999999999999998766


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|+|||++|||++++..+||||++|++|+++..|+++++...
T Consensus       190 ~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~  231 (353)
T 1oxx_K          190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (353)
T ss_dssp             HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            699999999999999999999999999999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.6e-43  Score=308.92  Aligned_cols=171  Identities=15%  Similarity=0.231  Sum_probs=148.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc-CCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~   62 (259)
                      +||+++|+||||||||||         +++|+|.++|.++         ++.++|++|++.+++.+|+.+++. +. ...
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~  110 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK  110 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence            799999999999999999         5899999999864         234999999998899999987653 22 111


Q ss_pred             --C--HHHHHHHHHHcC-CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           63 --D--PQRRAELIKVLD-ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        63 --~--~~~~~~~l~~~~-l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                        .  .+.+.++++.++ +.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|
T Consensus       111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g  189 (240)
T 1ji0_A          111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG  189 (240)
T ss_dssp             CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred             CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence              1  234567888884 74  4678999999999999999999999999999999999999999999999999875 59


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|||++|||++++..+||++++|++|+++..|+++++..
T Consensus       190 ~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          190 TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            999999999999999999999999999999999888754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.2e-43  Score=325.29  Aligned_cols=173  Identities=24%  Similarity=0.315  Sum_probs=154.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCC-C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-D   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~-~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++ ++.  .+. .
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~  104 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence            689999999999999999         5899999999875      35699999999999999998765 322  121 2


Q ss_pred             HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|+|||++
T Consensus       105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v  184 (348)
T 3d31_A          105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (348)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            25678899999986  4788999999999999999999999999999999999999999999999999877679999999


Q ss_pred             eCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          142 THIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |||++++..+|||+++|++|+++..|+++++...
T Consensus       185 THd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~  218 (348)
T 3d31_A          185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (348)
T ss_dssp             ESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             eCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.6e-43  Score=326.93  Aligned_cols=173  Identities=21%  Similarity=0.241  Sum_probs=148.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++.++|++|+..+|+.+|+.+++ ++.  .+.+.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  115 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK  115 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            699999999999999999         5899999999864      35699999999999999998765 333  23332


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus       116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  195 (372)
T 1v43_A          116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT  195 (372)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence                3467899999996  4788999999999999999999999999999999999999999999999999876669999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |++|||++++..+||||++|++|+++..|+++++...
T Consensus       196 i~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  232 (372)
T 1v43_A          196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  232 (372)
T ss_dssp             EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=2.8e-43  Score=325.46  Aligned_cols=173  Identities=25%  Similarity=0.295  Sum_probs=153.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH-hc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI-FG--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~-~~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|+++            ++.++|++|+..+|+.+|+.+++ ++  
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  107 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK  107 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            799999999999999999         5899999999754            24699999999999999998765 32  


Q ss_pred             cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ..+.+.    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.+
T Consensus       108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  187 (372)
T 1g29_1          108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR  187 (372)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence            233332    3467899999996  4788999999999999999999999999999999999999999999999999876


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +.|+|+|++|||++++..+||||++|++|+++..|+++++...
T Consensus       188 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  230 (372)
T 1g29_1          188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK  230 (372)
T ss_dssp             HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence            6699999999999999999999999999999999999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.1e-42  Score=308.01  Aligned_cols=172  Identities=25%  Similarity=0.275  Sum_probs=149.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccC-CCCccCcHHHHH-hccC---C--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEV-PIQMDVSAEKMI-FGVA---G--   61 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~-~~~~~lt~~~~~-~~~~---~--   61 (259)
                      +||+++|+||||||||||         +++|+|.++|.++     ++.++|++|++ ..++.+|+.+++ ++..   .  
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~  111 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR  111 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence            799999999999999999         5899999999864     45799999985 456678888755 3221   1  


Q ss_pred             CCHHHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           62 IDPQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        62 ~~~~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      ...+++.++++.+++.    .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|
T Consensus       112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~t  190 (266)
T 2yz2_A          112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKT  190 (266)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCE
T ss_pred             HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCE
Confidence            1245678899999996    36789999999999999999999999999999999999999999999999998765 999


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ||++|||++++..+||++++|++|+++..|+++++...
T Consensus       191 ii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  228 (266)
T 2yz2_A          191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK  228 (266)
T ss_dssp             EEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999887653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=1.3e-42  Score=304.91  Aligned_cols=170  Identities=18%  Similarity=0.253  Sum_probs=150.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-CCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~   63 (259)
                      +||+++|+||||||||||         ++ |+|.++|.++        ++.++|++|++.+++.+|+.+++. +. ....
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  103 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR  103 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCc
Confidence            799999999999999999         47 9999999864        346999999988888889987653 22 1223


Q ss_pred             HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989           64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK-------VLLLDEITVDLDVLARADLLRFLRKECEER  134 (259)
Q Consensus        64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~-------lllLDEPt~gLD~~~~~~~~~~l~~~~~~~  134 (259)
                      .+++.++++.+++.  .++++.+|||||||||+|||||+.+|+       +|||||||+|||+.++..++++|++++++ 
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-  182 (249)
T 2qi9_C          104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-  182 (249)
T ss_dssp             HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-
Confidence            56678899999985  467899999999999999999999999       99999999999999999999999998764 


Q ss_pred             CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus       183 g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999999999999888753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.5e-42  Score=309.33  Aligned_cols=171  Identities=23%  Similarity=0.351  Sum_probs=146.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCC--ccCcHHHHHh-cc-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQ--MDVSAEKMIF-GV-   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~--~~lt~~~~~~-~~-   59 (259)
                      +||+++|+||||||||||         +++|+|.++|.++          ++.++|++|++.++  ..+|+.+++. +. 
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~  125 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAF  125 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhh
Confidence            799999999999999999         5899999999764          24699999987543  3468887653 21 


Q ss_pred             -----CC-CCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           60 -----AG-IDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        60 -----~~-~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                           .+ ...   +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~  205 (279)
T 2ihy_A          126 KSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILD  205 (279)
T ss_dssp             --------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             hccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence                 11 122   3466789999985  477899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEE--EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          129 KECEERGATI--IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       129 ~~~~~~g~ti--ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++++ |+||  |++|||++++..+||++++|++|+++..|+++++..
T Consensus       206 ~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  252 (279)
T 2ihy_A          206 SLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT  252 (279)
T ss_dssp             HHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred             HHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            98765 9999  999999999999999999999999999999888754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=4.4e-42  Score=302.18  Aligned_cols=166  Identities=17%  Similarity=0.256  Sum_probs=144.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC---C----CC--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA---G----ID--   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~---~----~~--   63 (259)
                      +||+++|+||||||||||         +++|+|.     +++.++|++|++.+++.+|+.+++. +..   +    ..  
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~  104 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH  104 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence            799999999999999999         4899998     3467999999988888889887552 211   1    12  


Q ss_pred             -HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989           64 -PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  140 (259)
Q Consensus        64 -~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii  140 (259)
                       .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~  184 (253)
T 2nq2_C          105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF  184 (253)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred             HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence             23467889999986  467899999999999999999999999999999999999999999999999987655999999


Q ss_pred             EeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       141 ~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +|||++++..+||++++|++|+ +..|+++++..
T Consensus       185 vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~  217 (253)
T 2nq2_C          185 TTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT  217 (253)
T ss_dssp             EESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred             EecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence            9999999999999999999999 99999888753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.9e-41  Score=297.07  Aligned_cols=169  Identities=22%  Similarity=0.302  Sum_probs=144.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. +....+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~  112 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSV  112 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCH
Confidence            799999999999999999         5899999999764        346999999988775 58887664 3222345


Q ss_pred             HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++.+++.             .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++ 
T Consensus       113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-  191 (247)
T 2ff7_A          113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-  191 (247)
T ss_dssp             HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-
Confidence            5566777777663             12356899999999999999999999999999999999999999999999998 


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      + .|+|||++||+++.+.. ||++++|++|+++..|+++++...
T Consensus       192 ~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  233 (247)
T 2ff7_A          192 C-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE  233 (247)
T ss_dssp             H-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred             c-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            4 48999999999998875 999999999999999999988653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.5e-41  Score=301.69  Aligned_cols=171  Identities=20%  Similarity=0.256  Sum_probs=143.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. +......
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~  122 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPT  122 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCCh
Confidence            799999999999999999         5899999999764        346999999988776 58887653 3222111


Q ss_pred             -HH---------HHHHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           65 -QR---------RAELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        65 -~~---------~~~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                       +.         +.++++.+  ++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++
T Consensus       123 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~  202 (271)
T 2ixe_A          123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES  202 (271)
T ss_dssp             HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence             11         23456666  443  36778999999999999999999999999999999999999999999999987


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +++.|+|||++|||++++.. ||+|++|++|+++..|+++++...
T Consensus       203 ~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  246 (271)
T 2ixe_A          203 PEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER  246 (271)
T ss_dssp             TTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            65458999999999999875 999999999999999999988653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=6.3e-41  Score=296.93  Aligned_cols=170  Identities=18%  Similarity=0.187  Sum_probs=144.3

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-c---
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-G---   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~---   58 (259)
                      +||+++|+||||||||||           +++|+|.++|.++.         ..++|++|++.+++.+|+.+++. .   
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~  124 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA  124 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHh
Confidence            799999999999999999           25899999998642         24899999998888888876442 1   


Q ss_pred             ------cCCCCH----HHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           59 ------VAGIDP----QRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        59 ------~~~~~~----~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                            ....+.    +++.++++.+++.   .++++. +|||||||||+|||||+.+|++|||||||+|||+.++..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~  204 (267)
T 2zu0_C          125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA  204 (267)
T ss_dssp             HHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             hhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence                  111222    3466889999984   356776 59999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhHHH
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      ++|+++++ .|+|||++|||++++..+ ||++++|++|+++..|+++++.
T Consensus       205 ~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          205 DGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             HHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             HHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            99998754 599999999999999886 9999999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=4.7e-41  Score=303.15  Aligned_cols=169  Identities=21%  Similarity=0.265  Sum_probs=143.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|. .|+.+++ ++......
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~  157 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGN  157 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCH
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccCCH
Confidence            699999999999999999         5899999999864        457999999988875 4777665 44433344


Q ss_pred             HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++.+++.             ..++..+|||||||||+|||||+.+|++|||||||++||+.+...+++.|.++.
T Consensus       158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~  237 (306)
T 3nh6_A          158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC  237 (306)
T ss_dssp             HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence            5555555555442             134567999999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       238 --~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          238 --ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             --TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             --CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence              37899999999999987 999999999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=2.7e-41  Score=296.55  Aligned_cols=168  Identities=18%  Similarity=0.176  Sum_probs=139.3

Q ss_pred             CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-cc--
Q 024989            3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~--   59 (259)
                      +||+++|+||||||||||           +++|+|.++|.++.         ..++|++|++.+++.+|+.+++. ..  
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  107 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA  107 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHh
Confidence            799999999999999999           26899999998642         24889999998888899887542 11  


Q ss_pred             -CC--CC----HHHHHHHHHHcCCC---ccccCCc-CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           60 -AG--ID----PQRRAELIKVLDID---LSWRMHK-VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        60 -~~--~~----~~~~~~~l~~~~l~---~~~~~~~-LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                       .+  ..    .+++.++++.+++.   .++++.+ |||||||||+|||||+.+|++|||||||+|||+.++..++++|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~  187 (250)
T 2d2e_A          108 KLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN  187 (250)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHH
T ss_pred             hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence             11  12    23466789999983   3677888 99999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhH
Q 024989          129 KECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDK  171 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~  171 (259)
                      ++++ .|+|||++|||++++..+ ||++++|++|+++..|+++.
T Consensus       188 ~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          188 AMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             HHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             HHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            9864 589999999999999998 59999999999999999873

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-41  Score=294.88  Aligned_cols=168  Identities=18%  Similarity=0.283  Sum_probs=144.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c-cCCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G-VAGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~-~~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++ .|+.+++. + .....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~  105 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYT  105 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCC
Confidence            799999999999999999         5899999999764        356999999988876 48887764 3 12334


Q ss_pred             HHHHHHHHHHcCCC--c-----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID--L-----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~--~-----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+++.++++.+++.  .           ++++.+|||||||||+|||||+++|++|||||||+|||+.++..+++.|+++
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~  185 (243)
T 1mv5_A          106 DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL  185 (243)
T ss_dssp             HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence            55677788888763  1           2346799999999999999999999999999999999999999999999988


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      .  .|+|||++||+++++. .||++++|++|+++..|+++++..
T Consensus       186 ~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          186 M--KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA  226 (243)
T ss_dssp             H--TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred             c--CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence            5  4899999999999886 599999999999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.6e-40  Score=293.88  Aligned_cols=165  Identities=23%  Similarity=0.293  Sum_probs=145.0

Q ss_pred             CcEEEEEcCCCCCcccc--------CCceEEEEcCeec-----cccEE-EecccCCCCccCcHHHHHh-c--cCCCCHHH
Q 024989            4 PEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW-----RREVA-FAGFEVPIQMDVSAEKMIF-G--VAGIDPQR   66 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~-----~~~i~-~v~~~~~~~~~lt~~~~~~-~--~~~~~~~~   66 (259)
                      ||+++|+||||||||||        +++|+|.++|.++     ++.++ |++|++.+  .+|+.+++. .  .+....++
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~  107 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDL  107 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHH
Confidence            89999999999999999        5899999999765     34799 99998776  788876542 1  22344567


Q ss_pred             HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           67 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        67 ~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      +.++++.+++.   .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.   . |||++||
T Consensus       108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtH  183 (263)
T 2pjz_A          108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTH  183 (263)
T ss_dssp             HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEES
T ss_pred             HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEc
Confidence            88899999986   467899999999999999999999999999999999999999999999998763   2 9999999


Q ss_pred             ChhHHhccCC-eEEEEeCCeEEEecChhHHHH
Q 024989          144 IFDGLENWPS-HIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       144 ~~~~~~~~~d-rv~~l~~G~i~~~g~~~~~~~  174 (259)
                      |++++..+|| ++++|++|+++..|+++++.+
T Consensus       184 d~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          184 ELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             CGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            9999999999 999999999999999988764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=3.5e-40  Score=291.07  Aligned_cols=169  Identities=17%  Similarity=0.226  Sum_probs=142.2

Q ss_pred             CCcEEEEEcCCCCCccccC--------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCHH
Q 024989            3 EPEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~~   65 (259)
                      +||+++|+||||||||||.        .+|+|.++|.++        ++.++|++|++.+++ .|+.+++. +......+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~  123 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDE  123 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHH
Confidence            7999999999999999992        589999999764        346999999988875 58877653 32223445


Q ss_pred             HHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        66 ~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.++++.+++.             .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. 
T Consensus       124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-  202 (260)
T 2ghi_A          124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-  202 (260)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-
Confidence            566677666642             124678999999999999999999999999999999999999999999999874 


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      + |+|||++||+++.+. .||++++|++|+++..|+++++...
T Consensus       203 ~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  243 (260)
T 2ghi_A          203 K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL  243 (260)
T ss_dssp             T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence            3 899999999999886 4999999999999999999988653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=5.3e-40  Score=286.21  Aligned_cols=163  Identities=19%  Similarity=0.239  Sum_probs=132.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|     .++|++|++.+ +.+|+.+++........+...++++.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----~i~~v~Q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~  103 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----SVAYVPQQAWI-QNDSLRENILFGCQLEEPYYRSVIQA  103 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----CEEEECSSCCC-CSEEHHHHHHTTSCCCTTHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----EEEEEcCCCcC-CCcCHHHHhhCccccCHHHHHHHHHH
Confidence            799999999999999999         4899999998     49999998754 57788876532111122222333333


Q ss_pred             ------cCCC-------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHhcCcE
Q 024989           74 ------LDID-------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR---KECEERGAT  137 (259)
Q Consensus        74 ------~~l~-------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~---~~~~~~g~t  137 (259)
                            +++.       .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.   ++ . .|+|
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~t  181 (237)
T 2cbz_A          104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKT  181 (237)
T ss_dssp             TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSE
T ss_pred             HhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCE
Confidence                  3321       246789999999999999999999999999999999999999999999984   33 2 4899


Q ss_pred             EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ||++||+++++. .||++++|++|+++..|+++++..
T Consensus       182 viivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  217 (237)
T 2cbz_A          182 RILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLA  217 (237)
T ss_dssp             EEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence            999999999886 699999999999999999998865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.2e-39  Score=282.47  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=133.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|     .++|++|++.+++. |+.+++.........+..++++.
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~  106 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKA  106 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----CEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----EEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHH
Confidence            799999999999999999         5899999998     49999999888775 88876642111222233444444


Q ss_pred             cCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEE
Q 024989           74 LDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATII  139 (259)
Q Consensus        74 ~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l-~~~~~~~g~tii  139 (259)
                      +++.             .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.+ .++.  .|+|||
T Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi  184 (229)
T 2pze_A          107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRI  184 (229)
T ss_dssp             TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEE
T ss_pred             hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEE
Confidence            4431             12245799999999999999999999999999999999999999999974 5543  389999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++||+++++.. ||++++|++|+++..|+++++..
T Consensus       185 ~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          185 LVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             EECCCHHHHHH-CSEEEEEETTEEEEEECHHHHHT
T ss_pred             EEcCChHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            99999999864 99999999999999999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=306.45  Aligned_cols=170  Identities=18%  Similarity=0.217  Sum_probs=147.4

Q ss_pred             CCcEEEEEcCCCCCccccC--------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +||+++|+||||||||||+        ++|+|.++|+++        ++.++|++|++.+|+ +|+.+++........++
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~  124 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQE  124 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHH
Confidence            7999999999999999993        789999999864        367999999998886 58888775333345667


Q ss_pred             HHHHHHHcCCC--ccccCCc-----------CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           67 RAELIKVLDID--LSWRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        67 ~~~~l~~~~l~--~~~~~~~-----------LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      +.++++.+++.  .++++.+           |||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.  
T Consensus       125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--  202 (390)
T 3gd7_A          125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--  202 (390)
T ss_dssp             HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--
T ss_pred             HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--
Confidence            88899999985  4666666           99999999999999999999999999999999999999999998753  


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .|+|+|++||+++.+ ..||||++|++|+|+..|+++++....
T Consensus       203 ~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p  244 (390)
T 3gd7_A          203 ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYP  244 (390)
T ss_dssp             TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred             CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            489999999998755 459999999999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.5e-40  Score=285.71  Aligned_cols=159  Identities=18%  Similarity=0.254  Sum_probs=136.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh-c--cCC--CCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF-G--VAG--IDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~--~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.++   ++.++|++|++.+++.+|+.+++. +  ..+  ...+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~  113 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN  113 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence            799999999999999999         5899999999864   567999999998888889887542 1  122  2345


Q ss_pred             HHHHHHHHcCCCc-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           66 RRAELIKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        66 ~~~~~l~~~~l~~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ++.++++.+++.. ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+
T Consensus       114 ~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd  192 (214)
T 1sgw_A          114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSRE  192 (214)
T ss_dssp             HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESS
T ss_pred             HHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            6788999999853 6778999999999999999999999999999999999999999999999998654 8999999999


Q ss_pred             hhHHhccCCeEEEEeCCeE
Q 024989          145 FDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~G~i  163 (259)
                      ++++..+||+++++ .|+|
T Consensus       193 ~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          193 ELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             CCTTSSEEEEGGGG-BC--
T ss_pred             HHHHHHhCCEEEEe-CCcc
Confidence            99999999998854 4554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=3.6e-38  Score=282.45  Aligned_cols=162  Identities=23%  Similarity=0.295  Sum_probs=132.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +||+++|+||||||||||         +++|+|.++|     .++|++|++.+++. |+.+++.+. ........++++.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----~i~~v~Q~~~l~~~-tv~enl~~~-~~~~~~~~~~~~~  135 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----RISFCSQNSWIMPG-TIKENIIGV-SYDEYRYRSVIKA  135 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----CEEEECSSCCCCSS-BHHHHHHTT-CCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----EEEEEeCCCccCcc-cHHHHhhCc-ccchHHHHHHHHH
Confidence            799999999999999999         4799999998     49999999888775 888776532 1233333445555


Q ss_pred             cCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEE
Q 024989           74 LDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATII  139 (259)
Q Consensus        74 ~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l-~~~~~~~g~tii  139 (259)
                      +++.             .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+ .++.  .|+|||
T Consensus       136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tvi  213 (290)
T 2bbs_A          136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRI  213 (290)
T ss_dssp             TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEE
T ss_pred             hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEE
Confidence            5442             11235799999999999999999999999999999999999999999974 4443  389999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++||+++++. .||++++|++|+++..|+++++..
T Consensus       214 ivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          214 LVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             EECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence            9999999886 599999999999999999988754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.1e-37  Score=302.84  Aligned_cols=169  Identities=21%  Similarity=0.270  Sum_probs=143.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        +++++|++|++.+++. |+.+++ ++....+.
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~  444 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATD  444 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999865        3579999999888876 787765 44433445


Q ss_pred             HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.             ..++..+||||||||++|||||+++|++|||||||++||+.+...+.+.++++.
T Consensus       445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  524 (578)
T 4a82_A          445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS  524 (578)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence            5566666655541             123456899999999999999999999999999999999999999999998874


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       525 --~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~  565 (578)
T 4a82_A          525 --KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK  565 (578)
T ss_dssp             --TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred             --CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence              47899999999999875 999999999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1e-37  Score=303.18  Aligned_cols=169  Identities=22%  Similarity=0.277  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-CCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|+. |+.+++. +. ...+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~  446 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYT  446 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCC
Confidence            799999999999999999         5899999999764        4579999999988865 8877653 33 3345


Q ss_pred             HHHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+++.++++.+++.             ..++..+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++
T Consensus       447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b5x_A          447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            56677777777663             12345799999999999999999999999999999999999999999999987


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .  .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus       527 ~--~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b5x_A          527 Q--KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ  568 (582)
T ss_pred             c--CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            4  3899999999999987 5999999999999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.1e-37  Score=302.97  Aligned_cols=169  Identities=21%  Similarity=0.249  Sum_probs=145.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-CCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+++. |+.+++. +. ...+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~  446 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYS  446 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCC
Confidence            799999999999999999         5899999999864        3569999999988875 8877653 33 3345


Q ss_pred             HHHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+++.++++.+++.             ..++..+||||||||++|||||+++|++|||||||++||+.++..+.+.|+++
T Consensus       447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b60_A          447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL  526 (582)
T ss_dssp             HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            66677777777662             12356799999999999999999999999999999999999999999999987


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      . + |+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus       527 ~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          527 Q-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             H-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             h-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence            5 3 899999999999886 5999999999999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.6e-37  Score=302.15  Aligned_cols=169  Identities=21%  Similarity=0.259  Sum_probs=143.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        +++++|++|++.++.. |+.+++. +....+.
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~  446 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATD  446 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCH
Confidence            799999999999999999         5899999999865        4569999999988865 8877663 4333444


Q ss_pred             HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ++..+.++..++           +  ..++..+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.
T Consensus       447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  526 (587)
T 3qf4_A          447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT  526 (587)
T ss_dssp             HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence            445445444433           1  245678999999999999999999999999999999999999999999999863


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus       527 --~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          527 --KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH  567 (587)
T ss_dssp             --TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             --CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence              4899999999999986 7999999999999999999998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.1e-37  Score=303.95  Aligned_cols=169  Identities=20%  Similarity=0.280  Sum_probs=142.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        +++++|++|++.+++. |+.+++ ++....+.
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~  458 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATD  458 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTCCT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999875        3569999999888754 787765 34333344


Q ss_pred             HHHHHHHHHcCCC--c-----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID--L-----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~-----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++.+++.  .           .++..+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  538 (598)
T 3qf4_B          459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM  538 (598)
T ss_dssp             THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence            4555565555442  1           12336899999999999999999999999999999999999999999999874


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       539 --~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  579 (598)
T 3qf4_B          539 --EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK  579 (598)
T ss_dssp             --TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred             --CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence              48999999999999876 999999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.8e-37  Score=299.00  Aligned_cols=167  Identities=22%  Similarity=0.312  Sum_probs=144.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc--CC-CCHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDPQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~--~~-~~~~~~~~~   70 (259)
                      +||+++|+||||||||||         +++|+|.+     ...++|++|+...++.+|+.+++...  .. ...+.+.++
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~  385 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL  385 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----CceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence            699999999999999999         48999976     34699999988777778887765432  11 124456778


Q ss_pred             HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++
T Consensus       386 l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~  465 (538)
T 1yqt_A          386 LKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI  465 (538)
T ss_dssp             TTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            8888885  46789999999999999999999999999999999999999999999999998765699999999999999


Q ss_pred             hccCCeEEEEeC--CeEEEecChhHHHH
Q 024989          149 ENWPSHIVYVAH--GKLQLAMPMDKVKE  174 (259)
Q Consensus       149 ~~~~drv~~l~~--G~i~~~g~~~~~~~  174 (259)
                      ..+||||++|++  |++...|+++++..
T Consensus       466 ~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          466 DYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            999999999986  78888999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=3.4e-37  Score=300.72  Aligned_cols=167  Identities=21%  Similarity=0.307  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-C-C-CCHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-A-G-IDPQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~-~-~~~~~~~~~   70 (259)
                      +||+++|+||||||||||         +++|+|.+     ...++|++|++..++.+|+.+++... . . ...+.+.++
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~  455 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL  455 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence            699999999999999999         48999976     35699999998777788887765432 1 1 123456788


Q ss_pred             HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++.+++.  .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++
T Consensus       456 l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~  535 (607)
T 3bk7_A          456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI  535 (607)
T ss_dssp             HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            9999985  46789999999999999999999999999999999999999999999999998766799999999999999


Q ss_pred             hccCCeEEEEeC--CeEEEecChhHHHH
Q 024989          149 ENWPSHIVYVAH--GKLQLAMPMDKVKE  174 (259)
Q Consensus       149 ~~~~drv~~l~~--G~i~~~g~~~~~~~  174 (259)
                      ..+|||+++|++  |++...|+++++.+
T Consensus       536 ~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          536 DYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            999999999986  88888999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-36  Score=293.29  Aligned_cols=167  Identities=19%  Similarity=0.224  Sum_probs=141.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-CC---CCHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AG---IDPQRRAE   69 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~~---~~~~~~~~   69 (259)
                      +||+++|+||||||||||         +++|+|.+.+.    .++|++|+...+...|+.+++... ..   .....+.+
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  368 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ----ILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE  368 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC----CEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe----eeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence            799999999999999999         58999998753    589999987666677887755321 11   12244677


Q ss_pred             HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           70 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        70 ~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||+++
T Consensus       369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~  448 (538)
T 3ozx_A          369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI  448 (538)
T ss_dssp             TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            88888885  4778999999999999999999999999999999999999999999999999987679999999999999


Q ss_pred             HhccCCeEEEEeC--CeEEEecChhHHH
Q 024989          148 LENWPSHIVYVAH--GKLQLAMPMDKVK  173 (259)
Q Consensus       148 ~~~~~drv~~l~~--G~i~~~g~~~~~~  173 (259)
                      +..+||||++|++  |.....+++.++.
T Consensus       449 ~~~~aDri~vl~~~~~~~~~~~~~~~~~  476 (538)
T 3ozx_A          449 HDYIADRIIVFKGEPEKAGLATSPVTLK  476 (538)
T ss_dssp             HHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             HHHhCCEEEEEeCCcceeccCCChHHHH
Confidence            9999999999986  5666667766654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-36  Score=292.84  Aligned_cols=168  Identities=20%  Similarity=0.293  Sum_probs=143.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc-cCC--CCHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG-VAG--IDPQRRAEL   70 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~-~~~--~~~~~~~~~   70 (259)
                      +||+++|+||||||||||         +++|+. +    ....++|++|+.......|+.+++.. ...  .......++
T Consensus       377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~----~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~  451 (608)
T 3j16_B          377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-I----PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV  451 (608)
T ss_dssp             TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-C----CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHT
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-c----cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHH
Confidence            579999999999999999         478863 1    13468999998766556677765532 222  234556788


Q ss_pred             HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++++
T Consensus       452 l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~  531 (608)
T 3j16_B          452 VKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA  531 (608)
T ss_dssp             HHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            9999985  47889999999999999999999999999999999999999999999999998766799999999999999


Q ss_pred             hccCCeEEEEeC--CeEEEecChhHHHHH
Q 024989          149 ENWPSHIVYVAH--GKLQLAMPMDKVKEA  175 (259)
Q Consensus       149 ~~~~drv~~l~~--G~i~~~g~~~~~~~~  175 (259)
                      ..+||||++|++  |+++..|+++++.+.
T Consensus       532 ~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          532 TYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             HHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             HHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            999999999996  899999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1e-34  Score=304.18  Aligned_cols=169  Identities=23%  Similarity=0.325  Sum_probs=145.4

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hcc--CCC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~   62 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        |+++++|||++.+|.. |+++++ ++.  ...
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~ 1182 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSV 1182 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCC
Confidence            699999999999999999         5899999999864        5789999999998876 566655 454  234


Q ss_pred             CHHHHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           63 DPQRRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      +.+++.++++..++.         .+.    .-.+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus      1183 sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1183 TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            566777777777652         122    3357999999999999999999999999999999999999999999987


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      ..  .|+|+|+|+|.++.+.. ||+|+||++|+|++.|+++++.+.
T Consensus      1263 ~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A         1263 AR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp             TS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC
T ss_pred             Hc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            54  48999999999998887 999999999999999999999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=5.7e-34  Score=297.84  Aligned_cols=169  Identities=22%  Similarity=0.271  Sum_probs=142.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        ++.++|++|++.++.. |+.+++ ++....+.
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~  493 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTM  493 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCCCH
Confidence            799999999999999999         5899999999864        4569999999988876 777655 45444455


Q ss_pred             HHHHHHHHHcCC---------C----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI---------D----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l---------~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.+.++..++         .    ...+..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.
T Consensus       494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~  573 (1284)
T 3g5u_A          494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR  573 (1284)
T ss_dssp             HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence            555544444332         1    134567899999999999999999999999999999999999999999998753


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       574 --~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~  614 (1284)
T 3g5u_A          574 --EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE  614 (1284)
T ss_dssp             --TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred             --CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence              48999999999999987 999999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=5.1e-34  Score=298.90  Aligned_cols=170  Identities=24%  Similarity=0.323  Sum_probs=145.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        +++++||+|++.+|.. |+++++ ++....+.
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~~~~  521 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEGITR  521 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTTCCH
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcccchH
Confidence            799999999999999999         5899999999864        4579999999988766 565554 66655667


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    .+-.+||||||||++||||++.+|++|||||||++||+.+...+.+.|.++.
T Consensus       522 ~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~  601 (1321)
T 4f4c_A          522 EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA  601 (1321)
T ss_dssp             HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence            7777777766541         12    2446899999999999999999999999999999999999999999998875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                        +|+|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+.+..
T Consensus       602 --~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive~Gth~eL~~~~  643 (1321)
T 4f4c_A          602 --KGRTTIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRALMAQQ  643 (1321)
T ss_dssp             --TTSEEEEECSCTTTTTT-CSEEEEEETTEEEEEECHHHHHTTT
T ss_pred             --CCCEEEEEcccHHHHHh-CCEEEEeeCCeeeccCCHHHHHHhh
Confidence              48999999999998865 9999999999999999999998653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=5.1e-34  Score=298.24  Aligned_cols=169  Identities=22%  Similarity=0.277  Sum_probs=141.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC--CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA--GI   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~~   62 (259)
                      +||.++|+||||||||||         +++|+|.++|.++        +++++|++|++.++. .|+.+++. +..  ..
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~ 1136 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVV 1136 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCCC
Confidence            699999999999999999         5899999999864        467999999987764 57777663 322  23


Q ss_pred             CHHHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           63 DPQRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        63 ~~~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      +.+++.+.++..++.         .    ..+..+|||||||||+|||||+.+|++|||||||+|||+.+.+.+.+.|++
T Consensus      1137 ~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp             CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            445555555554431         1    223468999999999999999999999999999999999999999999987


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .  ..|+|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus      1217 ~--~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A         1217 A--REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp             H--SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred             h--CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            5  358999999999999866 999999999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=6.7e-34  Score=280.44  Aligned_cols=104  Identities=19%  Similarity=0.292  Sum_probs=95.2

Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      +++.+++.   .++++.+|||||||||+|||||+.+|+  +|||||||+|||+..+..++++|+++.+ .|.|||+||||
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd  263 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHD  263 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence            47778875   367899999999999999999999998  9999999999999999999999999865 59999999999


Q ss_pred             hhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      ++++. .||++++|      ++|++++.|+++++...
T Consensus       264 ~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~  299 (670)
T 3ux8_A          264 EDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMND  299 (670)
T ss_dssp             HHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred             HHHHh-hCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence            99876 59999999      89999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=4.2e-34  Score=275.58  Aligned_cols=156  Identities=19%  Similarity=0.266  Sum_probs=127.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEE---------EEcCeec----------cccEEEecccCCCCcc---Cc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDL---------SYLGGEW----------RREVAFAGFEVPIQMD---VS   51 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I---------~~~G~~~----------~~~i~~v~~~~~~~~~---lt   51 (259)
                      +||+++|+||||||||||         +++|++         .+.|.++          ...+++++|....++.   .+
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~  125 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK  125 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence            799999999999999999         478985         3556432          1246788776544332   25


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           52 AEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      +.+++....  ..+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++
T Consensus       126 v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  203 (538)
T 1yqt_A          126 VIELLKKAD--ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR  203 (538)
T ss_dssp             HHHHHHHHC--SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhh--HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            555442111  123467899999985  4678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      +.+ .|+|||+||||++++..+||||++|++|
T Consensus       204 l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          204 LSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHH-TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            876 5999999999999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=5.6e-33  Score=273.88  Aligned_cols=108  Identities=24%  Similarity=0.334  Sum_probs=96.5

Q ss_pred             HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      +..+.++.+++.   .++++.+|||||||||+|||||+++|   ++|||||||+|||+.++..++++|+++++ .|+|||
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi  600 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  600 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence            445677788874   36788999999999999999999887   59999999999999999999999999875 599999


Q ss_pred             EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      +||||++.+. .||||++|      ++|++++.|+++++.+.
T Consensus       601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~  641 (670)
T 3ux8_A          601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  641 (670)
T ss_dssp             EECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence            9999999875 59999999      89999999999998653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=1.1e-33  Score=275.99  Aligned_cols=156  Identities=20%  Similarity=0.292  Sum_probs=127.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEE---------EEcCeec----------cccEEEecccCCCCcc---Cc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDL---------SYLGGEW----------RREVAFAGFEVPIQMD---VS   51 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I---------~~~G~~~----------~~~i~~v~~~~~~~~~---lt   51 (259)
                      +||+++|+||||||||||         +++|++         .+.|.++          ...+++++|....++.   .+
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t  195 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK  195 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence            799999999999999999         478985         3556532          1246777775433221   26


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           52 AEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      +.+++....  ..+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++
T Consensus       196 v~e~l~~~~--~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  273 (607)
T 3bk7_A          196 VRELLKKVD--EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR  273 (607)
T ss_dssp             HHHHHHHTC--CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhH--HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            666553211  123467899999986  4778999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989          130 ECEERGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus       130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      +.+ .|+|||+||||++++..+||||++|+++
T Consensus       274 l~~-~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          274 LAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHH-TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHh-cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            876 5999999999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=4.7e-33  Score=281.79  Aligned_cols=165  Identities=19%  Similarity=0.233  Sum_probs=139.8

Q ss_pred             CCcEEEEEcCCCCCccccC---CceEEEEcCeecc--ccEEEecccC-CCCccCcHHHHHhc-cCCCCHHHHHHHHHHcC
Q 024989            3 EPEMVKVLGRSAFHDTALT---SSGDLSYLGGEWR--REVAFAGFEV-PIQMDVSAEKMIFG-VAGIDPQRRAELIKVLD   75 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---~~G~I~~~G~~~~--~~i~~v~~~~-~~~~~lt~~~~~~~-~~~~~~~~~~~~l~~~~   75 (259)
                      +||+++|+||||||||||.   ..|+|  .|.+..  ..++|++|+. .+++.+|+.+++.. ..+. .+++.++++.++
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lg  536 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFG  536 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc--CCCccccceeEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcC
Confidence            7999999999999999995   45765  554432  2468888765 56778888876642 2223 566788999999


Q ss_pred             CC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           76 ID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        76 l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      +.   .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++    .|.|||++|||++++..+|
T Consensus       537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~a  612 (986)
T 2iw3_A          537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVC  612 (986)
T ss_dssp             CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHC
T ss_pred             CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhC
Confidence            94   3678999999999999999999999999999999999999999999999986    4899999999999999999


Q ss_pred             CeEEEEeCCeEE-EecChhHHHH
Q 024989          153 SHIVYVAHGKLQ-LAMPMDKVKE  174 (259)
Q Consensus       153 drv~~l~~G~i~-~~g~~~~~~~  174 (259)
                      |++++|++|+++ ..|+++++..
T Consensus       613 drii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          613 EYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             SEEEEEETTEEEEEESCHHHHHH
T ss_pred             CEEEEEECCeeecCCCCHHHHHh
Confidence            999999999997 5899988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.98  E-value=4.6e-33  Score=268.21  Aligned_cols=156  Identities=17%  Similarity=0.269  Sum_probs=122.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEE-----------EEcCeecc--------c--cEEEecccCCCC---cc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDL-----------SYLGGEWR--------R--EVAFAGFEVPIQ---MD   49 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I-----------~~~G~~~~--------~--~i~~v~~~~~~~---~~   49 (259)
                      +||+++|+||||||||||         +++|+|           .+.|.++.        .  .+....+.....   ..
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK  103 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence            799999999999999999         589988           56665431        1  123333322211   12


Q ss_pred             CcHHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989           50 VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  127 (259)
Q Consensus        50 lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l  127 (259)
                      .++.+++....  ..+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|
T Consensus       104 ~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l  181 (538)
T 3ozx_A          104 GTVNEILTKID--ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI  181 (538)
T ss_dssp             SBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             CcHHHHhhcch--hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            24444332211  123467889999985  47889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989          128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  162 (259)
Q Consensus       128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~  162 (259)
                      +++. + |+|||+||||++++..+||+|++|++|.
T Consensus       182 ~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          182 RELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            9985 4 8999999999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.4e-32  Score=268.06  Aligned_cols=160  Identities=17%  Similarity=0.238  Sum_probs=121.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEE-----------EcCeecc--------ccE--EEecccCCCCc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-----------YLGGEWR--------REV--AFAGFEVPIQM----   48 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-----------~~G~~~~--------~~i--~~v~~~~~~~~----   48 (259)
                      +||+++|+||||||||||         +++|+|.           +.|.++.        +.+  .+.++.....+    
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK  181 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhc
Confidence            699999999999999999         5889873           3333211        111  12222111100    


Q ss_pred             --cCcHHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989           49 --DVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  124 (259)
Q Consensus        49 --~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~  124 (259)
                        ..++.+++........+++.++++.+++.  .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++
T Consensus       182 ~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~  261 (608)
T 3j16_B          182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA  261 (608)
T ss_dssp             SSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             chhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHH
Confidence              11222222111122346788899999996  57889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989          125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i  163 (259)
                      ++|+++.+ .|+|||+||||++++..+||||++|++|..
T Consensus       262 ~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          262 QIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             HHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred             HHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence            99999865 599999999999999999999999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.97  E-value=2.3e-32  Score=276.80  Aligned_cols=101  Identities=22%  Similarity=0.251  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           64 PQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        64 ~~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      .+++.++++.+++.    .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++    .|.|||
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~g~tVI  952 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVI  952 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----CSSEEE
T ss_pred             HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----hCCEEE
Confidence            45677899999995    2567899999999999999999999999999999999999999999888864    367999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      ++|||++++..+||++++|++|+++..|+
T Consensus       953 iISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          953 IITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             EEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999987664

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=1.7e-30  Score=262.40  Aligned_cols=108  Identities=23%  Similarity=0.371  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      +..++++.+++.   ..+++.+|||||||||+||+||+.+|   ++|||||||+|||+..++.+++.|+++.+ .|.|||
T Consensus       784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVI  862 (916)
T 3pih_A          784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVI  862 (916)
T ss_dssp             HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Confidence            456788888885   46788999999999999999999875   79999999999999999999999999875 599999


Q ss_pred             EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      +||||++.+.. ||+|++|      ++|+|++.|+++++...
T Consensus       863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~  903 (916)
T 3pih_A          863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN  903 (916)
T ss_dssp             EECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred             EEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence            99999998876 9999999      89999999999999764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.97  E-value=2.5e-30  Score=259.31  Aligned_cols=108  Identities=22%  Similarity=0.292  Sum_probs=98.6

Q ss_pred             HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~---p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      ++.++++.+++.   .++++.+|||||||||+||++|+.+   |++|||||||+|||+..+..++++|+++++ .|.|||
T Consensus       709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVI  787 (842)
T 2vf7_A          709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVI  787 (842)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            456789999985   3678999999999999999999996   799999999999999999999999999875 599999


Q ss_pred             EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      +||||++++ .+||||++|      ++|++++.|+++++...
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~  828 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA  828 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence            999999999 689999999      79999999999998653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.97  E-value=6.5e-30  Score=257.54  Aligned_cols=108  Identities=24%  Similarity=0.334  Sum_probs=97.4

Q ss_pred             HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      +..++++.+++.   .++++.+|||||||||+||++|+.+|   ++|||||||+|||+..+..++++|+++.+ .|.|||
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI  902 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  902 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            345788999985   36789999999999999999999875   99999999999999999999999999875 599999


Q ss_pred             EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      +||||++++. .||||++|      ++|++++.|+++++...
T Consensus       903 visHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~  943 (972)
T 2r6f_A          903 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  943 (972)
T ss_dssp             EECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred             EEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence            9999999975 79999999      78999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.7e-31  Score=250.51  Aligned_cols=164  Identities=13%  Similarity=0.085  Sum_probs=128.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCce-E-EEEcCeeccccEEEecccCCC---CccCcHHHHHhccC---CC-CH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSG-D-LSYLGGEWRREVAFAGFEVPI---QMDVSAEKMIFGVA---GI-DP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G-~-I~~~G~~~~~~i~~v~~~~~~---~~~lt~~~~~~~~~---~~-~~   64 (259)
                      +||+++|+||||||||||         +++| + |.++| +.++.++|++|+..+   +..+++.+++++..   +. ..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~  215 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLL  215 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhhcccccccCcchH
Confidence            799999999999999999         3799 8 99998 456779999998743   33456654444321   11 11


Q ss_pred             HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHH--HccCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG--LLKPFKV----LLLDE-ITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~a--l~~~p~l----llLDE-Pt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      +++.++++.+++.....+.+|||||||||+||+|  |+.+|++    ||||| ||++||+. +..+.++++    +.|.|
T Consensus       216 ~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~t  290 (460)
T 2npi_A          216 HNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVN  290 (460)
T ss_dssp             CCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCC
T ss_pred             HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCC
Confidence            2234567777775322278999999999999999  9999999    99999 99999998 544555443    35789


Q ss_pred             EEEEeCChh------HHhccCCe-----EEEEe-CCeEEEecChhHHH
Q 024989          138 IIYATHIFD------GLENWPSH-----IVYVA-HGKLQLAMPMDKVK  173 (259)
Q Consensus       138 iii~sH~~~------~~~~~~dr-----v~~l~-~G~i~~~g~~~~~~  173 (259)
                      +|++||+.+      ++..+||+     |++|+ +|+++ .++++++.
T Consensus       291 viiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          291 IMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             EEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred             EEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence            999999988      88899999     99999 99999 89988764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.95  E-value=2.2e-27  Score=220.39  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE----
Q 024989           85 VSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV----  158 (259)
Q Consensus        85 LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l----  158 (259)
                      ||||||||++||++|+.+|  ++|||||||+|||+..+..+.+.|+++.  .|.|||+|||+++.+ .+||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999986  389999999999776 579999999    


Q ss_pred             eCCeEEEec
Q 024989          159 AHGKLQLAM  167 (259)
Q Consensus       159 ~~G~i~~~g  167 (259)
                      ++|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            999988653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.94  E-value=1.2e-26  Score=213.76  Aligned_cols=85  Identities=15%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             cccCCcCCHHHHHHHHHHHHHc------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           79 SWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+..+..+++.|+++.+ .|.|||+||||++. ...|
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence            3567899999999999999999      79999999999999999999999999999864 59999999999998 5679


Q ss_pred             CeEEEEeCCeEEE
Q 024989          153 SHIVYVAHGKLQL  165 (259)
Q Consensus       153 drv~~l~~G~i~~  165 (259)
                      |++++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.92  E-value=7.3e-27  Score=192.87  Aligned_cols=138  Identities=8%  Similarity=-0.026  Sum_probs=91.0

Q ss_pred             CCcEEEEEcCCCCCccccCCc---eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC-c
Q 024989            3 EPEMVKVLGRSAFHDTALTSS---GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-L   78 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~---G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~-~   78 (259)
                      +||+++|+||||||||||...   |...+.+..+   .++++|+....   ......+.    ............+.. .
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~---~g~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~g~~~~   77 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFC---RGLMSDDENDQ---TVTGAAFD----VLHYIVSKRLQLGKLTV   77 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHH---HHHHCSSTTCG---GGHHHHHH----HHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHH---HHHhcCcccch---hhHHHHHH----HHHHHHHHHHhCCCeEE
Confidence            699999999999999999642   2211111111   13444432110   00000000    000011111223332 2


Q ss_pred             cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL----------------ARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~----------------~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      .......|+|||||++||+|++.+|++|+|||||++||+.                .+..+++.|+++.++ |.|+|++|
T Consensus        78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt  156 (171)
T 4gp7_A           78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL  156 (171)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE
T ss_pred             EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe
Confidence            2344567999999999999999999999999999999999                668899999888765 99999999


Q ss_pred             CChhHHhcc
Q 024989          143 HIFDGLENW  151 (259)
Q Consensus       143 H~~~~~~~~  151 (259)
                      ||++++..+
T Consensus       157 H~~~~~~~~  165 (171)
T 4gp7_A          157 NSPEEVEEV  165 (171)
T ss_dssp             CSHHHHHHE
T ss_pred             CCHHHhhhh
Confidence            999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=5.3e-24  Score=192.49  Aligned_cols=90  Identities=20%  Similarity=0.307  Sum_probs=74.8

Q ss_pred             cccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989           79 SWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr  154 (259)
                      +.++.+||+|||||++||+||+    .+|++|||||||++||+..+..++++|+++.  .|.|||++||+.+ +..+||+
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~  290 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-VMEAADL  290 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSE
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-HHhhCce
Confidence            3467899999999999999997    6899999999999999999999999999873  3889999999964 6678998


Q ss_pred             E--EEEeCCeEEE-ecChhH
Q 024989          155 I--VYVAHGKLQL-AMPMDK  171 (259)
Q Consensus       155 v--~~l~~G~i~~-~g~~~~  171 (259)
                      +  ++|.+|.... ....++
T Consensus       291 ~~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          291 LHGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEEEESSSCEEEEECCC--
T ss_pred             EEEEEEeCCEEEEEEEEcch
Confidence            7  7888876543 444443

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.90  E-value=2.2e-26  Score=196.63  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcC-----eeccccEEEecccCCCCc-cC--cHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLG-----GEWRREVAFAGFEVPIQM-DV--SAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G-----~~~~~~i~~v~~~~~~~~-~l--t~~~~~~~~~~~~~~~   66 (259)
                      +||+++|+||||||||||        +++|+|....     ...++.++|++|++.... .+  .....+...  ...+.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~--~~~~~   98 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDM--VEPEV   98 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTT--SCTTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHh--ccHHH
Confidence            589999999999999999        3688884311     123456899988751111 11  001111110  12234


Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +.++++. ++           |||||++|||||+.+|++|||||||+|    ++..++++|+++ + .|+||| +|||++
T Consensus        99 ~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~  159 (208)
T 3b85_A           99 IPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT  159 (208)
T ss_dssp             HHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred             HHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence            5555554 32           999999999999999999999999999    888899999887 4 589999 999998


Q ss_pred             HHhc
Q 024989          147 GLEN  150 (259)
Q Consensus       147 ~~~~  150 (259)
                      ++..
T Consensus       160 ~~~~  163 (208)
T 3b85_A          160 QVDL  163 (208)
T ss_dssp             ----
T ss_pred             HHhC
Confidence            7654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.90  E-value=1.4e-24  Score=180.89  Aligned_cols=136  Identities=12%  Similarity=0.030  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCCccccCC--ceE--EEEcCee--------ccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            6 MVKVLGRSAFHDTALTS--SGD--LSYLGGE--------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~--~G~--I~~~G~~--------~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      .++|+||||||||||..  .|.  |.++|.+        .++.++|++|+...      .+.++.......         
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~------~~~~~~~~~~~~---------   66 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEG------KKKIFSSKFFTS---------   66 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTC------CEEEEEETTCCC---------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcH------HHHHHHhhcCCc---------
Confidence            58999999999999941  110  4444432        23467888776411      111111100000         


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHH-----HccCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe---C
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMG-----LLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIYAT---H  143 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~a-----l~~~p~lllLDE--Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s---H  143 (259)
                       .-..++++.+||||||||++||+|     ++.+|++|||||  ||++||+..++.+.+.+.+    .+.|+|++|   |
T Consensus        67 -~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h  141 (178)
T 1ye8_A           67 -KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRD  141 (178)
T ss_dssp             -SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSC
T ss_pred             -cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCC
Confidence             001356788999999999999996     999999999999  9999999999988888764    467788888   5


Q ss_pred             ChhHHhccCCeEEEEeCCeEEE
Q 024989          144 IFDGLENWPSHIVYVAHGKLQL  165 (259)
Q Consensus       144 ~~~~~~~~~drv~~l~~G~i~~  165 (259)
                      +++++..+|+|    .+|+++.
T Consensus       142 ~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          142 VHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             CSHHHHHHHTC----TTCEEEE
T ss_pred             CchHHHHHHhc----CCcEEEE
Confidence            99999999998    5566654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=1.5e-22  Score=204.50  Aligned_cols=106  Identities=22%  Similarity=0.372  Sum_probs=96.1

Q ss_pred             HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989           68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  142 (259)
Q Consensus        68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s  142 (259)
                      .+.+..+|+.   .++++.+|||||||||+||+||+.+|+  +|||||||+||||..+..++++|+++.+ .|.|||+||
T Consensus       445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVt  523 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVE  523 (916)
T ss_dssp             HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEEC
T ss_pred             HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            4567778874   467899999999999999999999887  9999999999999999999999999864 599999999


Q ss_pred             CChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989          143 HIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       143 H~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~  175 (259)
                      ||++++.. ||+|++|      ++|++++.|+++++...
T Consensus       524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~  561 (916)
T 3pih_A          524 HDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKN  561 (916)
T ss_dssp             CCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred             CCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence            99998876 9999999      89999999999998754

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.88  E-value=2.1e-22  Score=163.17  Aligned_cols=83  Identities=22%  Similarity=0.321  Sum_probs=74.3

Q ss_pred             cccCCcCCHHHHHHHHHH------HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           79 SWRMHKVSDGQRRRVQIC------MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia------~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      ++++.+||||||||++||      +||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||++ ++..+|
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG-GGGGGC
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH-HHHHhC
Confidence            457899999999999876      899999999999999999999999999999998765 489999999999 577899


Q ss_pred             CeEEEE--eCCeE
Q 024989          153 SHIVYV--AHGKL  163 (259)
Q Consensus       153 drv~~l--~~G~i  163 (259)
                      |++++|  .+|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  45644

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.87  E-value=2.7e-25  Score=207.56  Aligned_cols=151  Identities=11%  Similarity=0.094  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHHHcC
Q 024989            6 MVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLD   75 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~~~~   75 (259)
                      +++|+||||||||||         +++|+|.++|.+..+. ++++|. +.++.+++.++. ++.   ....+.++++.++
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~-~~~~~ltv~D~~g~~~---~~~~~~~~L~~~~  145 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKH-PNIPNVVFWDLPGIGS---TNFPPDTYLEKMK  145 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEEC-SSCTTEEEEECCCGGG---SSCCHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccc-cccCCeeehHhhcccc---hHHHHHHHHHHcC
Confidence            999999999999999         4799999998765333 677776 345566655432 111   1234678888888


Q ss_pred             CCc-cccCCcCCHH--HHHHHHHHHHHcc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hc----
Q 024989           76 IDL-SWRMHKVSDG--QRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECE----ER----  134 (259)
Q Consensus        76 l~~-~~~~~~LSgG--~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~----~~----  134 (259)
                      +.. +..+. ||+|  |+||+.||+||++          +|++++|||||+|||+..+..+++.|++++.    +.    
T Consensus       146 L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~  224 (413)
T 1tq4_A          146 FYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE  224 (413)
T ss_dssp             GGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            753 33344 9999  9999999999999          9999999999999999999999999999852    22    


Q ss_pred             CcEEEEEeCChhH--HhccCCeEE-EEeCCe
Q 024989          135 GATIIYATHIFDG--LENWPSHIV-YVAHGK  162 (259)
Q Consensus       135 g~tiii~sH~~~~--~~~~~drv~-~l~~G~  162 (259)
                      ..+|++|||+++.  ++++||++. .|..|.
T Consensus       225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            3678999999998  999999985 555554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.86  E-value=2.9e-25  Score=188.16  Aligned_cols=145  Identities=9%  Similarity=-0.031  Sum_probs=102.1

Q ss_pred             CCcEEEEEcCCCCCccccC------CceEEEEcC----ee----ccccEEEecccCCCCccCcHHHHHh---------cc
Q 024989            3 EPEMVKVLGRSAFHDTALT------SSGDLSYLG----GE----WRREVAFAGFEVPIQMDVSAEKMIF---------GV   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~~G----~~----~~~~i~~v~~~~~~~~~lt~~~~~~---------~~   59 (259)
                      +||+++|+||||||||||.      .. .|.+.+    .+    .++.++|++|++..++.+++.+.+.         ..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~   97 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR   97 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence            7999999999999999993      11 233332    11    1245788888776666666544321         11


Q ss_pred             CCCCHHHHHHHH----------HHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCC----CHHHHHHH
Q 024989           60 AGIDPQRRAELI----------KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL----DVLARADL  123 (259)
Q Consensus        60 ~~~~~~~~~~~l----------~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gL----D~~~~~~~  123 (259)
                      ++.+.+...+.+          +.+++.  .++++..||           +|+.+|++++|||||+|+    |+..++.+
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l  166 (207)
T 1znw_A           98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRL  166 (207)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            222332232222          222222  234566777           899999999999999998    78899999


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989          124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  159 (259)
Q Consensus       124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~  159 (259)
                      ++.++++.++.|.|+|++|||++++..+||||++|.
T Consensus       167 ~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          167 DTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            999999876668999999999999999999999984

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.85  E-value=2.3e-21  Score=195.59  Aligned_cols=103  Identities=19%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+..+|+.   +++.+.+|||||+|||+||++|..+|  ++|||||||+||||.....+++.|+++. +.|.|||+||||
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHd  565 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHD  565 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Confidence            46778875   47889999999999999999999985  9999999999999999999999999986 469999999999


Q ss_pred             hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989          145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE  174 (259)
Q Consensus       145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~  174 (259)
                      ++++. .||||++|      ++|++++.|+++++..
T Consensus       566 l~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          566 EDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             HHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             HHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence            99886 69999999      7999999999998865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.85  E-value=8.4e-23  Score=183.62  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=112.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------------ccEEEecccCC-CCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------------REVAFAGFEVP-IQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------------~~i~~v~~~~~-~~~~lt~~~~~~-   57 (259)
                      +|++++|+||||||||||         +++|+|.+.|.+..              ..++|++|+.. .++.+++.+.+. 
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~  178 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR  178 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence            689999999999999999         37999999997631              25899999877 777777766542 


Q ss_pred             cc-CCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           58 GV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        58 ~~-~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      .. .+.+    ..+++.+|+.  .++++.+||   |||++||+||+.+|+  +|+|| ||+|||+..+      ++++.+
T Consensus       179 ~~~~~~d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~  244 (302)
T 3b9q_A          179 GKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNE  244 (302)
T ss_dssp             HHHTTCS----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHH
T ss_pred             HHHcCCc----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHH
Confidence            11 1111    1244555654  245678899   999999999999999  99999 9999999755      234444


Q ss_pred             hcCcEEEEEeC---------ChhHHhccCCeEEEEeCCeE
Q 024989          133 ERGATIIYATH---------IFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       133 ~~g~tiii~sH---------~~~~~~~~~drv~~l~~G~i  163 (259)
                      +.|.|+|++||         .++.+...+..|.++..|+.
T Consensus       245 ~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          245 VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            46899999999         56677778889999999975

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.83  E-value=1.4e-20  Score=188.70  Aligned_cols=103  Identities=21%  Similarity=0.312  Sum_probs=93.7

Q ss_pred             HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+..+|+.   +++++.+|||||+|||+||++|+.+|  ++|||||||+|||+...+.++++|+++.+ .|.|||+|||+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHd  440 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHD  440 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCC
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence            46677875   47889999999999999999999999  59999999999999999999999999864 69999999999


Q ss_pred             hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989          145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE  174 (259)
Q Consensus       145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~  174 (259)
                      ++++. .||+|++|      ++|++++.|+++++..
T Consensus       441 l~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~  475 (842)
T 2vf7_A          441 LDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH  475 (842)
T ss_dssp             HHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred             HHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence            99775 69999999      7999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.82  E-value=1.3e-21  Score=179.68  Aligned_cols=147  Identities=16%  Similarity=0.137  Sum_probs=112.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------------ccEEEecccCC-CCccCcHHHHHh-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------------REVAFAGFEVP-IQMDVSAEKMIF-   57 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------------~~i~~v~~~~~-~~~~lt~~~~~~-   57 (259)
                      +|++++|+||||||||||         +++|+|.+.|.+..              ..++|++|+.. .++..++.+.+. 
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~  235 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR  235 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence            689999999999999999         37999999997641              25899998877 777777766542 


Q ss_pred             cc-CCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           58 GV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        58 ~~-~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      .. .+.+    ..+++.+|+.  .++++.+||   +||++||+||+.+|+  +|+|| ||+|||+..+.      +++.+
T Consensus       236 ~~~~~~d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~  301 (359)
T 2og2_A          236 GKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNE  301 (359)
T ss_dssp             HHHTTCS----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHH
T ss_pred             HHhCCCH----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHH
Confidence            11 1111    1244556654  245678899   999999999999999  99999 99999997653      34444


Q ss_pred             hcCcEEEEEeC---------ChhHHhccCCeEEEEeCCeE
Q 024989          133 ERGATIIYATH---------IFDGLENWPSHIVYVAHGKL  163 (259)
Q Consensus       133 ~~g~tiii~sH---------~~~~~~~~~drv~~l~~G~i  163 (259)
                      ..|.|+|++||         .++.+...+..|.++..|+.
T Consensus       302 ~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          302 VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            46899999999         45667777889999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=1.4e-20  Score=180.58  Aligned_cols=147  Identities=11%  Similarity=-0.009  Sum_probs=105.4

Q ss_pred             CCCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC--
Q 024989            2 VEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--   77 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--   77 (259)
                      .+|++++|+|+||||||||..  .|...-.|.   +-+.|.+++...    ........ .+++.   .++. .+++.  
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~---~vi~~~~ee~~~----~l~~~~~~-~g~~~---~~~~-~~g~~~~  346 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACANKE---RAILFAYEESRA----QLLRNAYS-WGMDF---EEME-RQNLLKI  346 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC---CEEEEESSSCHH----HHHHHHHT-TSCCH---HHHH-HTTSEEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEeCCHH----HHHHHHHH-cCCCH---HHHH-hCCCEEE
Confidence            479999999999999999941  111000111   113344444211    11111111 12332   2222 34432  


Q ss_pred             ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHhcCcEEEEEeCCh-------
Q 024989           78 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL-----ARADLLRFLRKECEERGATIIYATHIF-------  145 (259)
Q Consensus        78 ~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~-----~~~~~~~~l~~~~~~~g~tiii~sH~~-------  145 (259)
                      .+..+.+||+||+||+.+|+++..+|++||+| ||++||+.     .+..++++++.++ +.|+|||++||+.       
T Consensus       347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~  424 (525)
T 1tf7_A          347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHS  424 (525)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCS
T ss_pred             EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCccc
Confidence            35677899999999999999999999999999 99999999     9999999998875 4699999999999       


Q ss_pred             ---hHHhccCCeEEEEeCCe
Q 024989          146 ---DGLENWPSHIVYVAHGK  162 (259)
Q Consensus       146 ---~~~~~~~drv~~l~~G~  162 (259)
                         ..+..+||+|++|++|+
T Consensus       425 ~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          425 ITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             SCSSCCTTTCSEEEEEEEEE
T ss_pred             ccCcccceeeeEEEEEEEEE
Confidence               78889999999999987

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.81  E-value=1.4e-20  Score=167.38  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=98.7

Q ss_pred             CCCcEEEEEcCCCCCccccC---------Cce-EEEEcCeec-----cccEEEecccCCC--CccCcHHHHHhccCCCCH
Q 024989            2 VEPEMVKVLGRSAFHDTALT---------SSG-DLSYLGGEW-----RREVAFAGFEVPI--QMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~---------~~G-~I~~~G~~~-----~~~i~~v~~~~~~--~~~lt~~~~~~~~~~~~~   64 (259)
                      -+|++++|+||||||||||.         ++| .|.+.+.+.     .+++.++.+...+  ++.++...    +.....
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~----~~~~~~  108 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI----IENGKF  108 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH----HHHTHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC----CCHHHH
Confidence            37999999999999999993         557 665554332     1112222122111  00111000    000000


Q ss_pred             -HHHHHHHHHcCCCccccCCcCCHHH-HHHHHHHHHHccCCcEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhcC
Q 024989           65 -QRRAELIKVLDIDLSWRMHKVSDGQ-RRRVQICMGLLKPFKVLLLDEITV---D---LDV-LARADLLRFLRKECEERG  135 (259)
Q Consensus        65 -~~~~~~l~~~~l~~~~~~~~LSgG~-~qrv~ia~al~~~p~lllLDEPt~---g---LD~-~~~~~~~~~l~~~~~~~g  135 (259)
                       +.+.++++...+.....+.++|.++ +||+. |+++.++|+++|+||||+   +   +|+ .....+.+.|++++++.|
T Consensus       109 ~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~  187 (296)
T 1cr0_A          109 DQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG  187 (296)
T ss_dssp             HHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence             1122333322332333446789998 67777 999999999999999999   5   566 677889999999987779


Q ss_pred             cEEEEEeCCh--h--------------------HHhccCCeEEEEeCCeE
Q 024989          136 ATIIYATHIF--D--------------------GLENWPSHIVYVAHGKL  163 (259)
Q Consensus       136 ~tiii~sH~~--~--------------------~~~~~~drv~~l~~G~i  163 (259)
                      +|||++||+.  +                    .++++||+|++|++|+.
T Consensus       188 ~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          188 VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             CEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            9999999995  5                    78889999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.78  E-value=8e-21  Score=178.75  Aligned_cols=153  Identities=12%  Similarity=0.116  Sum_probs=116.2

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCe---ec-------------cccEEEeccc-CCCCccCcHHHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGG---EW-------------RREVAFAGFE-VPIQMDVSAEKM   55 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~---~~-------------~~~i~~v~~~-~~~~~~lt~~~~   55 (259)
                      -+||+++|+||||||||||         +++|.|.+.|+   +.             ++.++|++|. .+.++.+++.++
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~  234 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAY  234 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHH
Confidence            4799999999999999999         48999999997   32             2458999884 444555565543


Q ss_pred             HhccCCCCHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           56 IFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        56 ~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ....        .+....-+-.   .-..+..||+|| ||++||   +.+|++      |+|||+..+..+.+++.++.+
T Consensus       235 ~~~~--------ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~  296 (438)
T 2dpy_A          235 ATRI--------AEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN  296 (438)
T ss_dssp             HHHH--------HHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred             HHHH--------HHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence            3210        0111111100   112367899999 999999   888988      999999999999999988754


Q ss_pred             ---hcCc-----EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          133 ---ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       133 ---~~g~-----tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                         +.|.     ||+++|||++  ..+||++++|.+|+++.+++++++..
T Consensus       297 ~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~  344 (438)
T 2dpy_A          297 GIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGH  344 (438)
T ss_dssp             CSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred             ccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence               2374     9999999999  77899999999999999998877643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.78  E-value=1e-21  Score=173.80  Aligned_cols=131  Identities=14%  Similarity=0.101  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH-hcc--CC-CCHHHH
Q 024989            6 MVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI-FGV--AG-IDPQRR   67 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~-~~~~~~   67 (259)
                      .++|+||||||||||         +++|+|.++|.++     ++.++|++|+..+++.+|+.++. ++.  .. ...+.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i   83 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI   83 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence            479999999999999         5899999999754     35689999998888888876543 221  11 112333


Q ss_pred             HHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        68 ~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      .++++.-  ..+..+.+||||||||+++|||++.   +++||||++|||+..    .++++.+.+ . .+||++.|..+.
T Consensus        84 ~~~~~~~--~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D~  152 (270)
T 3sop_A           84 EKYINEQ--YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKADT  152 (270)
T ss_dssp             HHHHHHH--HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGGG
T ss_pred             HHHHHHH--HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEecccc
Confidence            3333210  1245678999999999999999886   999999999999977    344555543 3 789998888654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.77  E-value=5.5e-22  Score=178.44  Aligned_cols=133  Identities=13%  Similarity=0.109  Sum_probs=94.4

Q ss_pred             CCcEEEEEcCCCCCccccC------CceEEEEcCeeccccEEEecccCCCCccCcHHH-HHhccCCCCHHHHHHHHHHcC
Q 024989            3 EPEMVKVLGRSAFHDTALT------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVAGIDPQRRAELIKVLD   75 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~-~~~~~~~~~~~~~~~~l~~~~   75 (259)
                      +||+++|+||||||||||.      .+|+|.          +|++|.+.++.. |+.+ ++......+ +.+.+.++.+ 
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~----------~~v~q~~~lf~~-ti~~~ni~~~~~~~-~~~~~~i~~~-  191 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL----------SFANHKSHFWLA-SLADTRAALVDDAT-HACWRYFDTY-  191 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHHTCEEE----------CGGGTTSGGGGG-GGTTCSCEEEEEEC-HHHHHHHHHT-
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhcCceEE----------EEecCccccccc-cHHHHhhccCcccc-HHHHHHHHHH-
Confidence            7999999999999999994      367773          345666555543 3332 221111112 2344556553 


Q ss_pred             CCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989           76 IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  155 (259)
Q Consensus        76 l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv  155 (259)
                      +.......+||||||||   ||||+.+|++||    |++||+.+...+..               +||+++.+ ..||+|
T Consensus       192 L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i  248 (305)
T 2v9p_A          192 LRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC  248 (305)
T ss_dssp             TTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC
T ss_pred             hHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE
Confidence            32111277999999999   999999999999    99999998887752               18998865 579999


Q ss_pred             EEEeCCeEEEecChhHH
Q 024989          156 VYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       156 ~~l~~G~i~~~g~~~~~  172 (259)
                       +|++|+++..|+.+++
T Consensus       249 -vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          249 -TDESGEQPFNITDADW  264 (305)
T ss_dssp             -CCC---CCCCCCHHHH
T ss_pred             -EEeCCEEEEeCCHHHH
Confidence             9999999999999988

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.77  E-value=3.9e-20  Score=168.05  Aligned_cols=108  Identities=12%  Similarity=-0.009  Sum_probs=85.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------ccEEEecccCCCCccCcHHHHHhccCCCCHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~   67 (259)
                      +|+.++|+||||||||||         +++|.|.++|.+..      +.+++++                          
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~--------------------------  223 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF--------------------------  223 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC--------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe--------------------------
Confidence            589999999999999999         47999999885310      0111110                          


Q ss_pred             HHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        68 ~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                                      .  |||+||++||+||..+|++|||||||+.       ++++.|+.+. ..+.|+|+++|+.+ 
T Consensus       224 ----------------g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~-  276 (330)
T 2pt7_A          224 ----------------G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGS-  276 (330)
T ss_dssp             ----------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSS-
T ss_pred             ----------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccH-
Confidence                            0  8999999999999999999999999982       3567777664 33458999999998 


Q ss_pred             HhccCCeEEEEeCCeE
Q 024989          148 LENWPSHIVYVAHGKL  163 (259)
Q Consensus       148 ~~~~~drv~~l~~G~i  163 (259)
                      +...|||+++|.+|..
T Consensus       277 ~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          277 SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHHHHHHHHHHTSG
T ss_pred             HHHHhhhheehhcCCc
Confidence            7778999999988853

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.77  E-value=9.9e-23  Score=174.46  Aligned_cols=128  Identities=10%  Similarity=0.011  Sum_probs=91.0

Q ss_pred             CCCcEEEEEcCCCCCccccC------CceEEEEcCeec---------cccEEEecccCCCCccCcH-HHHHh------cc
Q 024989            2 VEPEMVKVLGRSAFHDTALT------SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSA-EKMIF------GV   59 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~-~~~~~------~~   59 (259)
                      -+|++++|+||||||||||.      ..|.|.+ |.+.         ++.++|++|++..|+.++. .+++.      ..
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   99 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF   99 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence            37999999999999999992      2388988 7542         2457788877655544331 11111      11


Q ss_pred             CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHH-----HHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           60 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQI-----CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        60 ~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~i-----a~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      ++.+...++++++...+..  ...+|||||+||++|     +++|+.+|++++|||||+++|..+...+.+.+.+..+
T Consensus       100 ~g~~~~~i~~~l~~~~~~i--l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~  175 (218)
T 1z6g_A          100 YGTLKSEYDKAKEQNKICL--FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI  175 (218)
T ss_dssp             EEEEHHHHHHHHHTTCEEE--EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhCCCcEE--EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            2233445666776543211  115799999999999     8999999999999999999999988888888887643

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.77  E-value=5.1e-20  Score=186.70  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=73.8

Q ss_pred             cCCcCCHHHHHHHHHHHHH--ccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           81 RMHKVSDGQRRRVQICMGL--LKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al--~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      ....+|+|++++..+|+++  +.+|+++||||||+|+|+.....+ +.++..+.++.|.|+|++||+.+ +..+||++..
T Consensus       718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e-l~~lad~~~~  796 (934)
T 3thx_A          718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE-LTALANQIPT  796 (934)
T ss_dssp             -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG-GGGGGGTCTT
T ss_pred             HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH-HHHHhcccce
Confidence            3457888888888888888  999999999999999999988887 67777766545999999999966 5568999999


Q ss_pred             EeCCeEEEecChhHH
Q 024989          158 VAHGKLQLAMPMDKV  172 (259)
Q Consensus       158 l~~G~i~~~g~~~~~  172 (259)
                      +.+|++...++.+++
T Consensus       797 v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          797 VNNLHVTALTTEETL  811 (934)
T ss_dssp             EEEEEEEEEEETTEE
T ss_pred             eEeeEEEEEecCCcE
Confidence            999999887766654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.76  E-value=1.4e-18  Score=158.00  Aligned_cols=78  Identities=23%  Similarity=0.358  Sum_probs=70.2

Q ss_pred             ccCCcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989           80 WRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus        80 ~~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d  153 (259)
                      +++.+|||||||      |+++|++|+.+|++|||||||+|||+..+..++++|.++.+ .|.|||++||+.+ +..+||
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~~~d  321 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDAAD  321 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGGCS
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHHhCC
Confidence            467899999999      67888899999999999999999999999999999998865 4889999999955 678899


Q ss_pred             eEEEEe
Q 024989          154 HIVYVA  159 (259)
Q Consensus       154 rv~~l~  159 (259)
                      ++++|.
T Consensus       322 ~~~~l~  327 (339)
T 3qkt_A          322 HVIRIS  327 (339)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.76  E-value=1.5e-19  Score=153.39  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             CCHHHH-HHHHHHHHHcc-------CCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           85 VSDGQR-RRVQICMGLLK-------PFKVLLLDEITVDLDVL-------A-----RADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        85 LSgG~~-qrv~ia~al~~-------~p~lllLDEPt~gLD~~-------~-----~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ++.+++ +.+..+.+++.       +|+++++||||+++|+.       .     ...+++.|.+++++.|+|||++||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            344433 33555555544       99999999999999983       2     2367788888877779999999996


Q ss_pred             hhH----HhccCCeEEEEeCCe
Q 024989          145 FDG----LENWPSHIVYVAHGK  162 (259)
Q Consensus       145 ~~~----~~~~~drv~~l~~G~  162 (259)
                      +++    +..+||++++|++|+
T Consensus       180 ~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          180 QANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             C---------CCSEEEEEEECT
T ss_pred             ccCcchhhHhhceEEEEEEecC
Confidence            555    999999999998753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.75  E-value=2.9e-18  Score=145.23  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=68.6

Q ss_pred             CcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHhc
Q 024989           83 HKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIF--------DGLEN  150 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gL--D~~~~~~~~~~l~~~~~~~g~tiii~sH~~--------~~~~~  150 (259)
                      ...|.++.++...+.+...+|+  ++|+||||+++  |+..+..+++.|++++++.|.|||++||+.        ..+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~  181 (235)
T 2w0m_A          102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEH  181 (235)
T ss_dssp             SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHH
T ss_pred             cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhe
Confidence            3459999998888888888999  99999999887  999999999999998877799999999999        55899


Q ss_pred             cCCeEEEEeCCe
Q 024989          151 WPSHIVYVAHGK  162 (259)
Q Consensus       151 ~~drv~~l~~G~  162 (259)
                      +||+|++|++..
T Consensus       182 ~~d~vi~l~~~~  193 (235)
T 2w0m_A          182 VADGIIRFRRMI  193 (235)
T ss_dssp             HCSEEEEEEEEE
T ss_pred             eeeEEEEEEEEe
Confidence            999999998654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.75  E-value=1.6e-18  Score=165.93  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             cCCcC-CHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           81 RMHKV-SDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        81 ~~~~L-SgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      ++.+| ||||+|||+||+||+.+|  ++|||||||+|||+.++..+.++|+++++  |.|||+|||+++.+. .||++++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~  469 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK  469 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence            45677 999999999999999999  99999999999999999999999999863  799999999999776 5999999


Q ss_pred             EeCC
Q 024989          158 VAHG  161 (259)
Q Consensus       158 l~~G  161 (259)
                      |.++
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.75  E-value=6.4e-18  Score=140.17  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=69.4

Q ss_pred             ccCCcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989           80 WRMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  155 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv  155 (259)
                      +++..||||||||++||++|+.    +|+++||||||+|||+.++..+.++|+++.+  +.++|++||+... ..+||++
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad~i  136 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-MANADKI  136 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-HTTCSEE
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-HHhCCEE
Confidence            4578999999999999999974    5799999999999999999999999998753  5689999999765 5689999


Q ss_pred             EEE--eCCeE
Q 024989          156 VYV--AHGKL  163 (259)
Q Consensus       156 ~~l--~~G~i  163 (259)
                      +.+  .+|..
T Consensus       137 ~~v~~~~g~s  146 (173)
T 3kta_B          137 IGVSMRDGVS  146 (173)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEecCCEE
Confidence            865  46654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.74  E-value=2e-20  Score=179.49  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=94.5

Q ss_pred             CCcEEEEEcCCCCCccccC-----------CceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~   64 (259)
                      +||+++|+||||||||||.           ++|.|++.|.+.       .+.+||++|++.....+.    ...... . 
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~----~~~~~~-~-  111 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF----ILDASP-D-  111 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE----EEECCC-C-
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE----EEecCc-c-
Confidence            7999999999999999992           789999999753       245777777543211110    000000 0 


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-----DLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~-----gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      ++..++++.+++.  .++.+..||+|             +|++++|||||+     +||+..++.++++++.+++ .|+|
T Consensus       112 ~~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~t  177 (525)
T 1tf7_A          112 PEGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGAT  177 (525)
T ss_dssp             SSCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCE
T ss_pred             cchhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCE
Confidence            0000111111111  12334455554             588999999998     4699999999999999875 6999


Q ss_pred             EEEEeCChhHH---------hccCCeEEEEeC
Q 024989          138 IIYATHIFDGL---------ENWPSHIVYVAH  160 (259)
Q Consensus       138 iii~sH~~~~~---------~~~~drv~~l~~  160 (259)
                      ||++||+++++         ..+||+|++|++
T Consensus       178 vl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          178 TVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             EEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             EEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            99999999984         556999999998

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.74  E-value=2.7e-19  Score=183.16  Aligned_cols=142  Identities=13%  Similarity=0.129  Sum_probs=100.4

Q ss_pred             CcEEEEEcCCCCCccccCCc-eEEEEcCeeccccEE-EecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC--cc
Q 024989            4 PEMVKVLGRSAFHDTALTSS-GDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LS   79 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~~~-G~I~~~G~~~~~~i~-~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~   79 (259)
                      |++++|+||||||||||... |-+.     +..++| ||||+..   .+++.+.++..              +++.  ..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~iGl~~-----~~aqiG~~Vpq~~~---~l~v~d~I~~r--------------ig~~d~~~  846 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQAGLLA-----VMAQMGCYVPAEVC---RLTPIDRVFTR--------------LGASDRIM  846 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH-----HHHTTTCCEESSEE---EECCCSBEEEE--------------CC------
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH-----HHhheeEEeccCcC---CCCHHHHHHHH--------------cCCHHHHh
Confidence            79999999999999999531 3222     234555 8887642   33333222211              1211  12


Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR-ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  158 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~-~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l  158 (259)
                      ....++|++|++ +++|++++.+|+++|||||++|+|+... ..++++|+.+.++.|.++|++||+++.+..+||++.++
T Consensus       847 ~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~  925 (1022)
T 2o8b_B          847 SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR  925 (1022)
T ss_dssp             ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred             hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence            235678888876 9999999999999999999999999874 55789998887544899999999999999999999886


Q ss_pred             eCCeEE--EecCh
Q 024989          159 AHGKLQ--LAMPM  169 (259)
Q Consensus       159 ~~G~i~--~~g~~  169 (259)
                       +|++.  ..|++
T Consensus       926 -~g~~~~~~~~~~  937 (1022)
T 2o8b_B          926 -LGHMACMVENEC  937 (1022)
T ss_dssp             -EEEEEEC-----
T ss_pred             -cCeEEEEEecCc
Confidence             58877  34444

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.74  E-value=1.2e-19  Score=166.07  Aligned_cols=149  Identities=11%  Similarity=0.122  Sum_probs=105.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---c------------cEEEecccCCCCccCcHHHHHhc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---R------------EVAFAGFEVPIQMDVSAEKMIFG   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~------------~i~~v~~~~~~~~~lt~~~~~~~   58 (259)
                      +||.++|+||||||||||         ++.|.|.+.|++.+   .            .+.++++..     ....+.+..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~  144 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD-----RPALERMKA  144 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT-----SCHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC-----CCHHHHHHH
Confidence            799999999999999999         48999999986521   1            123332210     000000000


Q ss_pred             cCCCCHHHHHHHHHHc---CCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGIDPQRRAELIKVL---DID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~~~~~~~~l~~~---~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                           ......+.+.+   +-.   .-..+.+||+|| ||+++|   +.+|++      |+||||..+..+++++.++.+
T Consensus       145 -----~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~  209 (347)
T 2obl_A          145 -----AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGP  209 (347)
T ss_dssp             -----HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEE
T ss_pred             -----HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhC
Confidence                 00000111111   110   114578999999 899999   688887      999999999999999988754


Q ss_pred             -hcCc-----EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          133 -ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       133 -~~g~-----tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                       +.|.     ||+++|||++  +.+||++++|.+|+++.+++.+++.
T Consensus       210 ~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          210 APKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             CSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred             CCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcC
Confidence             4587     9999999999  7899999999999999999887753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.73  E-value=2e-20  Score=168.77  Aligned_cols=141  Identities=9%  Similarity=0.025  Sum_probs=99.5

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc--CC----CCHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG----IDPQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~--~~----~~~~~~   67 (259)
                      +|++++|+||||||||||.         +.|.         +.+++++|+..+++. |+.+++...  ++    .+.+.+
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~---------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~  158 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHH---------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRAL  158 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC---------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccccCCC---------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHH
Confidence            6899999999999999994         3332         468999998877776 766554211  12    234556


Q ss_pred             HHHHHHcCCCc-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           68 AELIKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        68 ~~~l~~~~l~~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      .++++.++-.. +.++.+|||||+||+++|++++.+|++||||||+..+|+..     ..+.+   ..+. .|+++|+.+
T Consensus       159 ~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~---~~D~-~I~V~a~~~  229 (312)
T 3aez_A          159 MRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSD---LFDF-SLYVDARIE  229 (312)
T ss_dssp             HHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGG---GCSE-EEEEEECHH
T ss_pred             HHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHH---hcCc-EEEEECCHH
Confidence            77888776322 35678999999999999999999999999999999998521     11222   2343 466677776


Q ss_pred             HH-hccCCeEEEEeCCe
Q 024989          147 GL-ENWPSHIVYVAHGK  162 (259)
Q Consensus       147 ~~-~~~~drv~~l~~G~  162 (259)
                      .. ...++|.+.++++.
T Consensus       230 ~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          230 DIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             HHHHHHHHHHHHHTTTG
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            54 33556666555554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.72  E-value=4.7e-18  Score=149.99  Aligned_cols=140  Identities=13%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             CCcEEEEEcCCCCCccccC-------CceEEEEcCeec--cccEEEecccCCCCccCcHHHHHhcc-CCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT-------SSGDLSYLGGEW--RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~~~--~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~~~~~~~l~   72 (259)
                      +|++++|+||||||||||.       ..|.+ +.|...  ...+.|+..+... ..  ....+..+ .........++++
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~-~~g~~~~~~~~v~~~~~e~~~-~~--~~~r~~~~g~~~~~~~~~~~~~  104 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPD-LLEVGELPTGPVIYLPAEDPP-TA--IHHRLHALGAHLSAEERQAVAD  104 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCC-TTCCCCCCCCCEEEEESSSCH-HH--HHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCC-cCCCccCCCccEEEEECCCCH-HH--HHHHHHHHHhhcChhhhhhccC
Confidence            7999999999999999994       45665 335433  2346666543221 00  11111111 1233444566778


Q ss_pred             HcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC--CCCHHH---HHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           73 VLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV--DLDVLA---RADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        73 ~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~--gLD~~~---~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      .+.+.  .++++..||+|++|++   ++++.+|+++|+||||+  ++|+..   ...+++.|++++++.|+|||++||+.
T Consensus       105 ~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~  181 (279)
T 1nlf_A          105 GLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS  181 (279)
T ss_dssp             HEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             ceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence            87764  3567899999997765   68888999999999999  999844   47888899988766799999999998


Q ss_pred             hHHh
Q 024989          146 DGLE  149 (259)
Q Consensus       146 ~~~~  149 (259)
                      ....
T Consensus       182 ~~~~  185 (279)
T 1nlf_A          182 KGAA  185 (279)
T ss_dssp             ----
T ss_pred             Cccc
Confidence            7654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.72  E-value=4.2e-18  Score=156.36  Aligned_cols=84  Identities=21%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             cCC-cCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989           81 RMH-KVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  150 (259)
Q Consensus        81 ~~~-~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~  150 (259)
                      ++. .||||||||++||++|+         .+|++|||||||++||+..+..+++.|.++.    .|+|++||. +.   
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~---  332 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP---  332 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT---
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc---
Confidence            455 79999999999999999         8999999999999999999999999997642    699999994 44   


Q ss_pred             cCCeEEEEeCCeEEEecChhHH
Q 024989          151 WPSHIVYVAHGKLQLAMPMDKV  172 (259)
Q Consensus       151 ~~drv~~l~~G~i~~~g~~~~~  172 (259)
                      .||++++|++|+++..|+++++
T Consensus       333 ~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             TCSEEEEEETTEEEECCCTTTS
T ss_pred             cCCEEEEEECCEEEecCCHHHH
Confidence            8999999999999999998775

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.68  E-value=6.6e-18  Score=154.46  Aligned_cols=143  Identities=15%  Similarity=0.121  Sum_probs=86.3

Q ss_pred             CCcEEEEEcCCCCCccccC-----------Cc----eE-EEEcCeec--cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTALT-----------SS----GD-LSYLGGEW--RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----------~~----G~-I~~~G~~~--~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~   64 (259)
                      +|+++.|+||||||||||.           ++    |. |++++.+.  ++++++++|...++..               
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~---------------  194 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD---------------  194 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH---------------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH---------------
Confidence            6899999999999999993           22    56 77777543  2234444443322211               


Q ss_pred             HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCCCHHH------------HHHHHH
Q 024989           65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-------KPFKVLLLDEITVDLDVLA------------RADLLR  125 (259)
Q Consensus        65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~-------~~p~lllLDEPt~gLD~~~------------~~~~~~  125 (259)
                          .+++.+-+.  .  ..-|.+++|++.++++++       .+|+++|+||||+++|+..            ...++.
T Consensus       195 ----~v~~ni~~~--~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~  266 (349)
T 1pzn_A          195 ----EVLKHIYVA--R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA  266 (349)
T ss_dssp             ----HHGGGEEEE--E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH
T ss_pred             ----HHhhCEEEE--e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH
Confidence                122211110  0  011567788888888887       7899999999999999852            456777


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989          126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  168 (259)
Q Consensus       126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~  168 (259)
                      .|.+++++.|+|||+++|........++.......|+++..+.
T Consensus       267 ~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          267 DLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             HHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred             HHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence            7788777779999999999876655444455566676655443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.67  E-value=1.1e-17  Score=169.32  Aligned_cols=75  Identities=9%  Similarity=0.022  Sum_probs=61.6

Q ss_pred             cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHI  155 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~~drv  155 (259)
                      .....++|+||+|++.|+++ +.+|+++||||||+|||+.....+. .++..+.++.|.|+|++||+++.+ .+||+.
T Consensus       730 ~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~  805 (918)
T 3thx_B          730 YKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY  805 (918)
T ss_dssp             ----CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred             HHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence            34567899999999999999 8999999999999999999988886 777776655699999999998765 456654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.67  E-value=1.3e-17  Score=146.67  Aligned_cols=113  Identities=13%  Similarity=0.095  Sum_probs=79.9

Q ss_pred             CCcEEEEEcCCCCCccccC---------C-ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S-SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~-~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~   72 (259)
                      +|++++|+||||||||||.         + +|+|.++|.++    .|+++....+        +.  .           .
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i----~~~~~~~~~~--------v~--q-----------~   78 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI----EYVFKHKKSI--------VN--Q-----------R   78 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC----CSCCCCSSSE--------EE--E-----------E
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc----eeecCCccee--------ee--H-----------H
Confidence            7899999999999999993         5 89999988653    3333221100        00  0           0


Q ss_pred             HcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           73 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        73 ~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      .+++..    ..|      |++||++|..+|++|++||||   |+.+...+   ++. +. .|.+|+++||+.+ +..+|
T Consensus        79 ~~gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~-~g~~vl~t~H~~~-~~~~~  139 (261)
T 2eyu_A           79 EVGEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AE-TGHLVFGTLHTNT-AIDTI  139 (261)
T ss_dssp             EBTTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HH-TTCEEEEEECCSS-HHHHH
T ss_pred             HhCCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-Hc-cCCEEEEEeCcch-HHHHH
Confidence            222211    222      899999999999999999999   99886543   433 33 5899999999987 56778


Q ss_pred             CeEEEEe
Q 024989          153 SHIVYVA  159 (259)
Q Consensus       153 drv~~l~  159 (259)
                      ||+++|.
T Consensus       140 dri~~l~  146 (261)
T 2eyu_A          140 HRIVDIF  146 (261)
T ss_dssp             HHHHHTS
T ss_pred             HHHhhhc
Confidence            8876654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.67  E-value=1.6e-16  Score=133.89  Aligned_cols=142  Identities=18%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             CCCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcc
Q 024989            2 VEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS   79 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~   79 (259)
                      -+|++++|+||||||||||..  .|       .....+.|+..+..... -...+.. ...+.+.+   ++++.+     
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~-------~~~~~v~~i~~~~~~~~-~~~~~~~-~~~~~~~~---~~~~~~-----   80 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL-------LSGKKVAYVDTEGGFSP-ERLVQMA-ETRGLNPE---EALSRF-----   80 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH-------HHCSEEEEEESSCCCCH-HHHHHHH-HTTTCCHH---HHHHHE-----
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH-------HcCCcEEEEECCCCCCH-HHHHHHH-HhcCCChH---HHhhcE-----
Confidence            369999999999999999952  11       11123445433221100 0011111 11122221   222222     


Q ss_pred             ccCCcCCHHH--HHHHHHHHHHccC-CcEEEEeCCCCCCCHH--------HHHHHHHHHHHHHHhcCcEEEEEeCChh--
Q 024989           80 WRMHKVSDGQ--RRRVQICMGLLKP-FKVLLLDEITVDLDVL--------ARADLLRFLRKECEERGATIIYATHIFD--  146 (259)
Q Consensus        80 ~~~~~LSgG~--~qrv~ia~al~~~-p~lllLDEPt~gLD~~--------~~~~~~~~l~~~~~~~g~tiii~sH~~~--  146 (259)
                       .+.++|+++  +|+++.+++++.+ |+++|+||||+.+|+.        ....+++.|++++++.|.|||+++|...  
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~  159 (220)
T 2cvh_A           81 -ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDS  159 (220)
T ss_dssp             -EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             -EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcC
Confidence             234555554  5688888899986 9999999999999973        3345666688887777999999999876  


Q ss_pred             -----------HHhccCCeEEEEeCC
Q 024989          147 -----------GLENWPSHIVYVAHG  161 (259)
Q Consensus       147 -----------~~~~~~drv~~l~~G  161 (259)
                                 .++.+||++++|++.
T Consensus       160 ~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          160 RTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             TTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CCCccccCCCcceeecCcEEEEEEEe
Confidence                       577899999999865

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.66  E-value=2e-19  Score=151.74  Aligned_cols=138  Identities=16%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCC--ccCcHHHHHh-cc--C-CCCHHHHHHHHHHcCC
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ--MDVSAEKMIF-GV--A-GIDPQRRAELIKVLDI   76 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~--~~lt~~~~~~-~~--~-~~~~~~~~~~l~~~~l   76 (259)
                      +|++++|+||||||||||...    +.|. ....++|++|+..++  ..+++.+... .+  . ..+.+.+.++++.+++
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~----l~~~-~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQA----LART-LGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR   79 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHH----HHHH-HGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred             CcEEEEEECCCCCCHHHHHHH----HHHH-hCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence            689999999999999999520    1110 001488998887655  3456654321 11  1 1345566777887776


Q ss_pred             C--ccccCCcCCHHH----HHHHHHHHHHccCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           77 D--LSWRMHKVSDGQ----RRRVQICMGLLKPFKVLLLDEITVD-------LDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        77 ~--~~~~~~~LSgG~----~qrv~ia~al~~~p~lllLDEPt~g-------LD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      .  ..+++.++|+|+    +||+++|++++.+|.++++||||++       ||+.....+.+.+.+..++.|.|++.++|
T Consensus        80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~  159 (211)
T 3asz_A           80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA  159 (211)
T ss_dssp             TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            4  355788999997    4788999999999999999999999       99999999999888765556999999999


Q ss_pred             Ch
Q 024989          144 IF  145 (259)
Q Consensus       144 ~~  145 (259)
                      ++
T Consensus       160 ~~  161 (211)
T 3asz_A          160 QY  161 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.66  E-value=7e-18  Score=146.29  Aligned_cols=149  Identities=15%  Similarity=0.130  Sum_probs=99.3

Q ss_pred             CCcEEEEEcCCCCCccccCC-----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHh---ccCC------CCHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALTS-----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAG------IDPQRRA   68 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~-----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~---~~~~------~~~~~~~   68 (259)
                      +|++++|+||||||||||..     -|.+.++  ..++.++|++++. ++..++..++..   +...      .+.+.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~--~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVE--QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMH  100 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSC--GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccc--ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHH
Confidence            68999999999999999952     2544443  3456799998884 666777765431   2111      1223344


Q ss_pred             HHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           69 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        69 ~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      +.++.+.-....++..||+||+||+.+ ++++.+|+++|||||....+..        +.++   .+.+|+++||+...+
T Consensus       101 ~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~~~  168 (245)
T 2jeo_A          101 RTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDVRL  168 (245)
T ss_dssp             HHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHHHH
T ss_pred             HHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHHHH
Confidence            555544222456788999999999988 6888999999999999888863        2222   378999999974444


Q ss_pred             -hccCCeEEEEeCCeEEEecChhHHHH
Q 024989          149 -ENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       149 -~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                       ..+++++   .+|+     +.+++..
T Consensus       169 ~r~~~r~~---~~G~-----~~e~~~~  187 (245)
T 2jeo_A          169 SRRVLRDV---RRGR-----DLEQILT  187 (245)
T ss_dssp             HHHHHHHT---C--------CHHHHHH
T ss_pred             HHHHHHHH---HcCC-----CHHHHHH
Confidence             4455544   5664     4555543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.65  E-value=3.8e-17  Score=162.87  Aligned_cols=113  Identities=20%  Similarity=0.181  Sum_probs=79.2

Q ss_pred             CcEEEEEcCCCCCccccC----------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            4 PEMVKVLGRSAFHDTALT----------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~----------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      |++++|+||||||||||.          +.|.+.-   .....++++++   ++..+++.+                   
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp---a~~~~i~~v~~---i~~~~~~~d-------------------  630 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP---AEEAHLPLFDG---IYTRIGASD-------------------  630 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS---SSEEEECCCSE---EEEECCC---------------------
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee---hhccceeeHHH---hhccCCHHH-------------------
Confidence            899999999999999994          3444310   01122444322   222222211                   


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHHH--ccCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDLDVLAR-ADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~al--~~~p~lllLDEP---t~gLD~~~~-~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                            .....+|+||++++.+++++  +.+|+++|||||   |++||+.+. ..+.+.|.+    .|.|+|++||+.+.
T Consensus       631 ------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l  700 (765)
T 1ewq_A          631 ------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFEL  700 (765)
T ss_dssp             ----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHH
T ss_pred             ------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence                  11235799999999999999  999999999999   999999876 457777654    48999999999887


Q ss_pred             HhccC
Q 024989          148 LENWP  152 (259)
Q Consensus       148 ~~~~~  152 (259)
                      +. +|
T Consensus       701 ~~-~~  704 (765)
T 1ewq_A          701 TA-LG  704 (765)
T ss_dssp             HT-CC
T ss_pred             HH-hh
Confidence            64 55

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.63  E-value=1.9e-18  Score=145.26  Aligned_cols=142  Identities=15%  Similarity=0.036  Sum_probs=90.8

Q ss_pred             CcEEEEEcCCCCCccccC--------CceEEEEcCeec------cccEEEecccCCCCccCcHHHHHhccCCCCHHHHHH
Q 024989            4 PEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE   69 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~   69 (259)
                      ||+++|+||||||||||.        ++| |.++|...      ++.++|++|+.  ....   .++..+. ....    
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~~~~-~~~~----   69 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLSRVG-LEPP----   69 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEEECC-CCCC----
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhhccc-ccCC----
Confidence            789999999999999994        578 88888543      45688887764  1111   1111110 0000    


Q ss_pred             HHHHcCC--CccccCCcCCHHHHHHH-HHHH---HHccCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEE-
Q 024989           70 LIKVLDI--DLSWRMHKVSDGQRRRV-QICM---GLLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIY-  140 (259)
Q Consensus        70 ~l~~~~l--~~~~~~~~LSgG~~qrv-~ia~---al~~~p~lllLDE--Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii-  140 (259)
                         ....  ...++...+|+|||+++ ++++   |++.+|++|||||  |++.+|+...+.+.+++.    . ..++|+ 
T Consensus        70 ---~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilg  141 (189)
T 2i3b_A           70 ---PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILG  141 (189)
T ss_dssp             ---SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEE
T ss_pred             ---ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEE
Confidence               0000  01234457999999988 4444   5899999999999  899999976555555543    3 334443 


Q ss_pred             ---EeCChhHHhccCCeEEEEeCCeEEEe
Q 024989          141 ---ATHIFDGLENWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       141 ---~sH~~~~~~~~~drv~~l~~G~i~~~  166 (259)
                         +||+.+  ..++|+|..+.+|+++..
T Consensus       142 ti~vsh~~~--~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          142 TIPVPKGKP--LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             ECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred             EeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence               349874  345666666688888763

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.63  E-value=6.7e-16  Score=141.90  Aligned_cols=78  Identities=31%  Similarity=0.369  Sum_probs=68.4

Q ss_pred             ccCCcCCHHHHHHH------HHHHHHccC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           80 WRMHKVSDGQRRRV------QICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        80 ~~~~~LSgG~~qrv------~ia~al~~~-p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      .++..|||||+||+      ++|++|+.+ |++|||||||+|||+..+..+.+.|.++.  .+.+||++||+++ +..+|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~-~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE-LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG-GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH-HHhhC
Confidence            34578999999988      567899999 99999999999999999999999998853  3568999999986 67899


Q ss_pred             CeEEEEeC
Q 024989          153 SHIVYVAH  160 (259)
Q Consensus       153 drv~~l~~  160 (259)
                      |++++|++
T Consensus       353 d~~~~l~k  360 (371)
T 3auy_A          353 DVIINVKK  360 (371)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999973

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.62  E-value=3.9e-17  Score=146.80  Aligned_cols=132  Identities=15%  Similarity=0.086  Sum_probs=88.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------------cccEEEecccCCCCccCcHHHHHhc-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------------RREVAFAGFEVPIQMDVSAEKMIFG-   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------------~~~i~~v~~~~~~~~~lt~~~~~~~-   58 (259)
                      +|++++|+||||||||||         +++|+|.+.|.+.              +..++|++|+...++..++.+.+.. 
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            589999999999999999         4899999999764              1347889888777776666554321 


Q ss_pred             c-CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           59 V-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        59 ~-~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      . .+.+    ..+++..|.. +.....++...+||++||||++.+|+  ++.|| |+++.      .+++.++++.+..|
T Consensus       181 ~~~~~d----~~llDt~G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~~~~  248 (304)
T 1rj9_A          181 KARGYD----LLFVDTAGRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHEAVG  248 (304)
T ss_dssp             HHHTCS----EEEECCCCCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHHHHC
T ss_pred             HhCCCC----EEEecCCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHHHcC
Confidence            0 0000    0012222321 11222234455899999999999999  55566 55554      45566666665568


Q ss_pred             cEEEEEeCChh
Q 024989          136 ATIIYATHIFD  146 (259)
Q Consensus       136 ~tiii~sH~~~  146 (259)
                      .|+|++||+.+
T Consensus       249 ~t~iivTh~d~  259 (304)
T 1rj9_A          249 LTGVIVTKLDG  259 (304)
T ss_dssp             CSEEEEECTTS
T ss_pred             CcEEEEECCcc
Confidence            99999999843

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.62  E-value=1.3e-15  Score=142.45  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=67.8

Q ss_pred             CCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           82 MHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      +..||||||||++||++|+    .+|+++||||||++||+..+..+.++|.++.. .|.++|++||+... ...||++++
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~  408 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVG  408 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEE
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEE
Confidence            3469999999999999999    68999999999999999999999999998753 47899999999765 557999998


Q ss_pred             Ee
Q 024989          158 VA  159 (259)
Q Consensus       158 l~  159 (259)
                      |.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.59  E-value=5.7e-16  Score=155.15  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989           83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      .++|++|++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||+++.+ .+||++..+.+|
T Consensus       668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~  745 (800)
T 1wb9_A          668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANV  745 (800)
T ss_dssp             --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEE
T ss_pred             hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEE
Confidence            467888765 4445556899999999999999999877775 7888877653589999999999765 589998778888


Q ss_pred             eEEEec
Q 024989          162 KLQLAM  167 (259)
Q Consensus       162 ~i~~~g  167 (259)
                      ++....
T Consensus       746 ~~~~~~  751 (800)
T 1wb9_A          746 HLDALE  751 (800)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776644

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.56  E-value=1e-15  Score=140.36  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989           94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus        94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      +||+||.++|++|++||||   |+...    +.+.+.+. .|.|||+++|+.+.+ ..|||++.|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETI----RLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            9999999999999999999   66543    34444443 599999999999987 679999888544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.55  E-value=2.8e-20  Score=154.58  Aligned_cols=156  Identities=8%  Similarity=0.044  Sum_probs=99.3

Q ss_pred             CcEEEEEcCCCCCccccC------CceEEEEcCeecccc--EEEecccCCCCccCcHHHHHhccCCCCHHHHHHHH----
Q 024989            4 PEMVKVLGRSAFHDTALT------SSGDLSYLGGEWRRE--VAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI----   71 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~~~~~--i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l----   71 (259)
                      |++++|+||||||||||.      ++|.+.++|.++.+.  .+++++....+...++.+.+...       .....    
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~   74 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLLAQN   74 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHHTTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHhcCC
Confidence            789999999999999993      679999998765432  34444332222222332222100       00111    


Q ss_pred             ----HHcCCC-ccccCCcC--CHHHHHHHHHHH------HHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           72 ----KVLDID-LSWRMHKV--SDGQRRRVQICM------GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        72 ----~~~~l~-~~~~~~~L--SgG~~qrv~ia~------al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +.+... ..+...++  |+||+|++.++.      ++..+|+...+|+   ++|+..+.. ++.+..+. +.+.+|
T Consensus        75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~i  149 (189)
T 2bdt_A           75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYF  149 (189)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSE
T ss_pred             cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEE
Confidence                100000 00122345  889988888888      8889998888883   899988888 88888764 357899


Q ss_pred             EEEeCC-hhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989          139 IYATHI-FDGLENWPSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       139 ii~sH~-~~~~~~~~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      |.+||. +++++++||+|+  ++|+++..|+++.+.
T Consensus       150 i~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          150 YNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             EECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             EeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            999999 999999999998  999999999887653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.54  E-value=1.2e-16  Score=155.91  Aligned_cols=147  Identities=13%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCCcccc---------C-CceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989            6 MVKVLGRSAFHDTAL---------T-SSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL---------~-~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~   64 (259)
                      .++|+||||||||||         + ++|.|+++|.++           ++.++|++|+..+++.+++.+++.       
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~-------  119 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN-------  119 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH-------
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH-------
Confidence            489999999999999         4 799999999762           345888888887777777654331       


Q ss_pred             HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHH-hcCcE
Q 024989           65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI------TVDLDVLARADLLRFLRKECE-ERGAT  137 (259)
Q Consensus        65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP------t~gLD~~~~~~~~~~l~~~~~-~~g~t  137 (259)
                          .....++.. .   ..+|   ++++.++.+....|+++|+|||      |+|||+..+..+.++++++.+ ..+.+
T Consensus       120 ----~~~~~~~~~-~---~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ii  188 (608)
T 3szr_A          120 ----KAQNAIAGE-G---MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETIS  188 (608)
T ss_dssp             ----HHHHHHHCS-S---SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCE
T ss_pred             ----HHHHHhcCC-c---cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence                111111110 0   0011   1122233334568999999999      999999999999999999754 34788


Q ss_pred             EEEEeCChhHHhcc------------CCeEEEEeCCeEEEecChh
Q 024989          138 IIYATHIFDGLENW------------PSHIVYVAHGKLQLAMPMD  170 (259)
Q Consensus       138 iii~sH~~~~~~~~------------~drv~~l~~G~i~~~g~~~  170 (259)
                      ++++||+++.+...            +..|+++.++.++..|+.+
T Consensus       189 l~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~  233 (608)
T 3szr_A          189 LVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED  233 (608)
T ss_dssp             EEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT
T ss_pred             eEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH
Confidence            99999998743221            3568889888877766654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.53  E-value=6.4e-16  Score=132.56  Aligned_cols=133  Identities=11%  Similarity=0.074  Sum_probs=83.6

Q ss_pred             CCCCcEEEEEcCCCCCcccc--------C---CceEEEEcCeecc----ccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989            1 MVEPEMVKVLGRSAFHDTAL--------T---SSGDLSYLGGEWR----REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ   65 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL--------~---~~G~I~~~G~~~~----~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~   65 (259)
                      |-+|++++|+||||||||||        +   .+|.|.+.+.+.+    ..++|++|+...|..+++...+         
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f---------   83 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF---------   83 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE---------
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH---------
Confidence            56899999999999999999        2   4788888876542    2466766654444333321000         


Q ss_pred             HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                           ++.+.+     ...+.|-.+++   +..++..++++|||     ||+.++..+++.+.     .|.||+++||++
T Consensus        84 -----~E~~~~-----~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~  140 (219)
T 1s96_A           84 -----LEHAEV-----FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK  140 (219)
T ss_dssp             -----EEEEEE-----TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH
T ss_pred             -----HHHHHH-----HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH
Confidence                 000000     00000000111   33344558999999     99999999988764     389999999999


Q ss_pred             hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          146 DGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       146 ~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      +++.+   |+  +.+|    .++++++..
T Consensus       141 ~~l~~---Rl--~~rG----~~~~e~i~~  160 (219)
T 1s96_A          141 IELDR---RL--RGRG----QDSEEVIAK  160 (219)
T ss_dssp             HHHHH---HH--HTTS----CSCHHHHHH
T ss_pred             HHHHH---HH--HHcC----CCCHHHHHH
Confidence            98876   43  6667    466666643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.52  E-value=3.6e-17  Score=146.62  Aligned_cols=131  Identities=14%  Similarity=0.045  Sum_probs=73.9

Q ss_pred             EEEEcCCCCCccccC----------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHH
Q 024989            7 VKVLGRSAFHDTALT----------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAEL   70 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~----------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~   70 (259)
                      ++|+|+||+|||||.          ++| |.+.|.+.     .+.++++++....+..+++.+.. ++......+....+
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l   99 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI   99 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred             EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence            589999999999993          566 66655443     13356776665555555554322 11000000111112


Q ss_pred             HHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           71 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        71 l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~g-LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      .+.+.-..+.++.++|||||||+.+|||++    ++++||||++ ||+...    ++++++..+.+.++|+++||+.
T Consensus       100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          100 ISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            211100024567899999999999999886    9999999985 999873    5566555445889999999984

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.52  E-value=7.6e-14  Score=119.09  Aligned_cols=61  Identities=18%  Similarity=0.366  Sum_probs=43.4

Q ss_pred             cCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhcCcEEEEEeCChhHHhc------------------
Q 024989          101 KPFKVLLLDEITVDLDVL-------A-----RADLLRFLRKECEERGATIIYATHIFDGLEN------------------  150 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~-------~-----~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~------------------  150 (259)
                      .+|+++++|||++.+|+.       .     ...++..|.+++++.|+|||+++|.......                  
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  197 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA  197 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence            589999999999999985       3     3456677777777779999999998765543                  


Q ss_pred             -cCCeEEEEeCC
Q 024989          151 -WPSHIVYVAHG  161 (259)
Q Consensus       151 -~~drv~~l~~G  161 (259)
                       +||++++|+++
T Consensus       198 ~~~d~vi~l~~~  209 (243)
T 1n0w_A          198 HASTTRLYLRKG  209 (243)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             hcCcEEEEEEEc
Confidence             89999999875

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.40  E-value=6.6e-15  Score=123.00  Aligned_cols=70  Identities=17%  Similarity=0.086  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCC---ccccCCcCCHHHHHH-HHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989           67 RAELIKVLDID---LSWRMHKVSDGQRRR-VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  137 (259)
Q Consensus        67 ~~~~l~~~~l~---~~~~~~~LSgG~~qr-v~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t  137 (259)
                      ..++++..++.   ...++..+|+||+|| +..+++++.+|+++++||||+++|+.+...+++.|.++..+ |.|
T Consensus       129 ~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~  202 (210)
T 1pui_A          129 MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP  202 (210)
T ss_dssp             HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence            44556666664   245678899999999 89999999999999999999999999999999999987643 543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.37  E-value=1.5e-13  Score=126.52  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=74.6

Q ss_pred             CCcEEEEEcCCCCCccccC---------C-ceEEEEcCeec----cccEEEecccCCCCccCcHHHHHhccCCCCHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------S-SGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRA   68 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~-~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~   68 (259)
                      +|++++|+||||||||||.         + +|.|.+.+.+.    +..+++++|.                         
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------------------  189 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------------------  189 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE-------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee-------------------------
Confidence            6899999999999999993         4 79997766432    1223333331                         


Q ss_pred             HHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           69 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        69 ~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                          .+++.    +..|      +.+|+++|..+|++|++|||+   |+...   ...++. + ..|.+|+.++|+.+ +
T Consensus       190 ----~~g~~----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~-~~g~~vi~t~H~~~-~  246 (372)
T 2ewv_A          190 ----EVGED----TKSF------ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-A-ETGHLVFGTLHTNT-A  246 (372)
T ss_dssp             ----EBTTT----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-H-TTTCEEEECCCCCS-H
T ss_pred             ----ecCCC----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-H-hcCCEEEEEECcch-H
Confidence                02221    2344      469999999999999999999   77653   344443 3 35899999999965 6


Q ss_pred             hccCCeEEE
Q 024989          149 ENWPSHIVY  157 (259)
Q Consensus       149 ~~~~drv~~  157 (259)
                      ...|||++.
T Consensus       247 ~~~~~rl~~  255 (372)
T 2ewv_A          247 IDTIHRIVD  255 (372)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            667777643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.35  E-value=2.5e-12  Score=119.48  Aligned_cols=62  Identities=13%  Similarity=0.266  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEEeCCh-------------------hHHh
Q 024989          101 KPFKVLLLDEITVDLDVLAR------------ADLLRFLRKECEERGATIIYATHIF-------------------DGLE  149 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~~~------------~~~~~~l~~~~~~~g~tiii~sH~~-------------------~~~~  149 (259)
                      .+|+++++|||++.+|+...            ..+++.|++++++.|+|||+++|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999997532            5678888888888899999999983                   2357


Q ss_pred             ccCCeEEEEeCCe
Q 024989          150 NWPSHIVYVAHGK  162 (259)
Q Consensus       150 ~~~drv~~l~~G~  162 (259)
                      .++|.+++|++++
T Consensus       352 ~~ad~vl~L~~~~  364 (400)
T 3lda_A          352 YSSTTRLGFKKGK  364 (400)
T ss_dssp             HHCSEEEEEEECS
T ss_pred             HhcceEEEEEecC
Confidence            7789999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.32  E-value=8.3e-15  Score=126.67  Aligned_cols=124  Identities=19%  Similarity=0.108  Sum_probs=79.2

Q ss_pred             CCcEEEEEcCCCCCccccC------------CceEEEEcCeecc----ccEEEecccCCCCccCcHHHHHhc--------
Q 024989            3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEWR----REVAFAGFEVPIQMDVSAEKMIFG--------   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~~----~~i~~v~~~~~~~~~lt~~~~~~~--------   58 (259)
                      +|++++|+||||||||||.            ++|+|.+.|.+..    ..+.+++++..+++..++.+++..        
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            5799999999999999993            4555555543211    122333444445555555443210        


Q ss_pred             ---cCCC--CHHHHHHHHH--HcC------------CC--ccccCCcCCHHHHHHHHHHHHH-ccCCcEEEEe----CCC
Q 024989           59 ---VAGI--DPQRRAELIK--VLD------------ID--LSWRMHKVSDGQRRRVQICMGL-LKPFKVLLLD----EIT  112 (259)
Q Consensus        59 ---~~~~--~~~~~~~~l~--~~~------------l~--~~~~~~~LSgG~~qrv~ia~al-~~~p~lllLD----EPt  112 (259)
                         +.+.  ...+...+..  .++            +.  .++++.+|||    |+   +|+ +.+|++++||    |||
T Consensus       106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~  178 (246)
T 2bbw_A          106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL  178 (246)
T ss_dssp             CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred             eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence               1122  2222233322  122            11  1345778999    66   677 9999999999    999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q 024989          113 VDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus       113 ~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      ++||+.+...+.+.|.++.++
T Consensus       179 ~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          179 VQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHHHHh
Confidence            999999999999999987653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.32  E-value=3.8e-16  Score=143.10  Aligned_cols=89  Identities=10%  Similarity=0.039  Sum_probs=65.4

Q ss_pred             CCcCCHHHHHHHHHHHHHc-cCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhcc
Q 024989           82 MHKVSDGQRRRVQICMGLL-KPFKVLLLDE---IT------VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW  151 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~-~~p~lllLDE---Pt------~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~  151 (259)
                      +..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+.+.|.++.++.|.+||+++|. .+.+++
T Consensus       256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~  334 (365)
T 1lw7_A          256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRY  334 (365)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHH
Confidence            4466778888888888774 6999999999   65      58999999999999988766568999999976 567778


Q ss_pred             CCeEEEEeCCeEEEecChhHHH
Q 024989          152 PSHIVYVAHGKLQLAMPMDKVK  173 (259)
Q Consensus       152 ~drv~~l~~G~i~~~g~~~~~~  173 (259)
                      |+++.+|++  ++..++++++.
T Consensus       335 ~~~i~~i~~--~l~~~~~~~~~  354 (365)
T 1lw7_A          335 NQVKAVIEK--VLNEEEISELQ  354 (365)
T ss_dssp             HHHHHHHHH--HTSCCCCSSCC
T ss_pred             HHHHHHHHH--HhcccchhHhh
Confidence            888777754  44455555543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.29  E-value=5.8e-12  Score=101.41  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=36.1

Q ss_pred             HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024989           99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT-IIYATHI  144 (259)
Q Consensus        99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t-iii~sH~  144 (259)
                      ++.+|++|++|||++ +++..+..+++++.++.. .|++ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence            467899999999998 666668889999988764 5788 8888885

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.27  E-value=1.4e-13  Score=113.60  Aligned_cols=118  Identities=11%  Similarity=0.008  Sum_probs=72.7

Q ss_pred             CCcEEEEEcCCCCCcccc-------CCceEEEEcCeeccc------cEEEecccCCCCccCcHHHHHhcc------CCCC
Q 024989            3 EPEMVKVLGRSAFHDTAL-------TSSGDLSYLGGEWRR------EVAFAGFEVPIQMDVSAEKMIFGV------AGID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL-------~~~G~I~~~G~~~~~------~i~~v~~~~~~~~~lt~~~~~~~~------~~~~   63 (259)
                      +|++++|+||||||||||       ++.|.|.++|.++..      .++|++|...  ...++.+++...      .+..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~   85 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF   85 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe
Confidence            689999999999999999       478999999976422      1233333211  123333322110      0000


Q ss_pred             HHHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        64 ~~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                       ..++.++..+++.    .+.++..+|+|++|++.++|++..+|+++        +|+...+.+++.+..+.
T Consensus        86 -~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~  148 (191)
T 1zp6_A           86 -VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG  148 (191)
T ss_dssp             -EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred             -EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence             0000000111111    02345689999999999999999999876        68888888887776543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.22  E-value=6.7e-13  Score=109.01  Aligned_cols=47  Identities=17%  Similarity=0.105  Sum_probs=40.4

Q ss_pred             ccCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989          100 LKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus       100 ~~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +.+|++|+||||++ ++|+..+..+++++.+... .|+++|++||...+
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChh
Confidence            34999999999985 9999999999999987654 58999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.22  E-value=1e-13  Score=124.91  Aligned_cols=57  Identities=19%  Similarity=-0.038  Sum_probs=46.7

Q ss_pred             CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989           83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  152 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~  152 (259)
                      .+||+||+||+..+++++.+|+++  |||         ..+.+.|++++  .+.+|+++||+.-.+..+.
T Consensus       140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~  196 (318)
T 1nij_A          140 NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLLF  196 (318)
T ss_dssp             HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGGS
T ss_pred             hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHHh
Confidence            379999999999999999999987  999         67888888764  4899999999755555444

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.21  E-value=1.5e-11  Score=110.73  Aligned_cols=121  Identities=15%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             EEEEcCCCCCcccc----------CCceEEEEcCeecc------ccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHH
Q 024989            7 VKVLGRSAFHDTAL----------TSSGDLSYLGGEWR------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAEL   70 (259)
Q Consensus         7 ~~i~G~sG~GKTtL----------~~~G~I~~~G~~~~------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~   70 (259)
                      +.|.||||+|||||          ++.|.+.++|.++.      ..++++++...+.....  +    ..........+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~  112 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----MGNNDRIVIQEL  112 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h----cCCcchHHHHHH
Confidence            89999999999999          36799988886542      23444544322111100  0    000111123444


Q ss_pred             HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      ++.+...  ..... +|||           +..+|+++|+|||++ ||+..+..+++.|.+..  .+.++|++||+.+.+
T Consensus       113 i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          113 LKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI  177 (354)
T ss_dssp             HHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred             HHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence            4443211  11112 5566           788999999999999 99999999999998753  478999999997643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.18  E-value=1.6e-11  Score=111.21  Aligned_cols=144  Identities=15%  Similarity=0.066  Sum_probs=92.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------c--cEEEecccCCCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------R--EVAFAGFEVPIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~--~i~~v~~~~~~~~~lt~~~~~~-~   58 (259)
                      +|++++|+||||||||||         +++|+|.+.|.+..            +  .+.+++|....++.+++.+.+. +
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            589999999999999999         38999999998742            1  2457777777777777665442 1


Q ss_pred             cC-CCCHHHHHHHHHHcCCCc--cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           59 VA-GIDPQRRAELIKVLDIDL--SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        59 ~~-~~~~~~~~~~l~~~~l~~--~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      .. +.+    .-+++..|...  ...+.+||       .+++++..++.+++||.+| +.      .+.+.++.+.+..+
T Consensus       208 ~~~~~d----~vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~~------~~~~~~~~~~~~~~  269 (328)
T 3e70_C          208 KARGID----VVLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA-GN------AIVEQARQFNEAVK  269 (328)
T ss_dssp             HHHTCS----EEEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-TT------HHHHHHHHHHHHSC
T ss_pred             Hhccch----hhHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-HH------HHHHHHHHHHHhcC
Confidence            00 000    00112222211  11223343       4899999999999999555 43      44555666665569


Q ss_pred             cEEEEEeCChh---------HHhccCCeEEEEeCCeEE
Q 024989          136 ATIIYATHIFD---------GLENWPSHIVYVAHGKLQ  164 (259)
Q Consensus       136 ~tiii~sH~~~---------~~~~~~drv~~l~~G~i~  164 (259)
                      .|+|++||.-+         .+....-.|.++..|+-+
T Consensus       270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            99999999532         233444567777777654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.17  E-value=6.1e-13  Score=124.29  Aligned_cols=128  Identities=17%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             EEEEcCCCCCccccC---------Cce--EEEEcCee--ccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989            7 VKVLGRSAFHDTALT---------SSG--DLSYLGGE--WRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK   72 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~---------~~G--~I~~~G~~--~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~   72 (259)
                      ++|+|+||||||||.         +.|  .+.+.+..  ....+++++|...++..+++.+.. ++...........+.+
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~  113 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID  113 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHH
Confidence            699999999999993         222  11111111  123466776666665566654432 1111000011112222


Q ss_pred             HcCCCccccCCcCCHHHHHHHHHHHHHccCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           73 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK---VLLLDEIT-VDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        73 ~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~---lllLDEPt-~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      .+.       ..++.+++||++||++++.+|+   +|++|||| .+||+...    .+++.+.  .+.+||++.|..+.
T Consensus       114 ~i~-------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~--~~v~iIlVinK~Dl  179 (418)
T 2qag_C          114 YID-------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH--EKVNIIPLIAKADT  179 (418)
T ss_dssp             HHH-------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT--TTSEEEEEEESTTS
T ss_pred             HHH-------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh--ccCcEEEEEEcccC
Confidence            221       2566778899999999999999   99999999 69999764    4455543  36788888887653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.15  E-value=1.6e-12  Score=115.93  Aligned_cols=114  Identities=11%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             CCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hc-----------cCC-CCHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG-----------VAG-IDPQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~-----------~~~-~~~~~~   67 (259)
                      +|.+++|.|+||||||||..  .+...-.|.. ++.+.+++++..+++. +..+.+ ++           ... .+.+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l  107 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLL  107 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC-CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHH
Confidence            57899999999999999952  0000000111 2334555787666543 222222 11           111 234455


Q ss_pred             HHHHHHcCCCc----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHH
Q 024989           68 AELIKVLDIDL----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL  118 (259)
Q Consensus        68 ~~~l~~~~l~~----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~  118 (259)
                      .+.++.+.-..          ...-..+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus       108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            56666653321          1234689999999999984443399999999999999985

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.12  E-value=1.5e-13  Score=113.54  Aligned_cols=117  Identities=11%  Similarity=0.008  Sum_probs=71.3

Q ss_pred             cEEEEEcCCCCCccccC---------C---ceEEEEcCeec-----------c-ccEE----EecccCCCCccCcHHHHH
Q 024989            5 EMVKVLGRSAFHDTALT---------S---SGDLSYLGGEW-----------R-REVA----FAGFEVPIQMDVSAEKMI   56 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~---------~---~G~I~~~G~~~-----------~-~~i~----~v~~~~~~~~~lt~~~~~   56 (259)
                      ++++|+|+||||||||.         +   .|.|.++|.++           + +.++    +++|+..++.  .  +  
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--~--~--   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--R--R--   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--E--E--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--e--c--
Confidence            68999999999999993         4   89999998652           1 2355    5555443331  0  0  


Q ss_pred             hccCCCCHH---HHHHHHHH-cCCCcccc-CCcCCHHHHHHHHHHHHHccCCcEE-------EEeCCCC---CCCHHHHH
Q 024989           57 FGVAGIDPQ---RRAELIKV-LDIDLSWR-MHKVSDGQRRRVQICMGLLKPFKVL-------LLDEITV---DLDVLARA  121 (259)
Q Consensus        57 ~~~~~~~~~---~~~~~l~~-~~l~~~~~-~~~LSgG~~qrv~ia~al~~~p~ll-------lLDEPt~---gLD~~~~~  121 (259)
                          + +.+   ...++++. +. ..+.. ...|||||+||++||||++.+|++.       +=|.|..   -+|.....
T Consensus        77 ----~-~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~  150 (171)
T 2f1r_A           77 ----V-SEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVE  150 (171)
T ss_dssp             ----C-CHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHH
T ss_pred             ----C-ChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHH
Confidence                0 111   23455555 43 22222 2349999999999999999999873       2345432   23445566


Q ss_pred             HHHHHHHHHHHh
Q 024989          122 DLLRFLRKECEE  133 (259)
Q Consensus       122 ~~~~~l~~~~~~  133 (259)
                      .+.++|.+...+
T Consensus       151 ~~a~~i~~~~~~  162 (171)
T 2f1r_A          151 RIAEFILSLLRE  162 (171)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            778888776654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.12  E-value=4.8e-10  Score=95.38  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             cCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HhccCCeEEEEeC
Q 024989          101 KPFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAH  160 (259)
Q Consensus       101 ~~p~lllLDEPt~gL--D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~--------~~~~~drv~~l~~  160 (259)
                      .+|+++++|+|++.+  |+.....++..+.+++++.|+|||+++|....        ++++||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            579999999999988  66555566666666766779999999999876        5678999999975

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.09  E-value=3.4e-11  Score=110.25  Aligned_cols=95  Identities=14%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             CCCcEEEEEcCCCCCcccc----------CCceEEEEc-Cee----ccccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL----------TSSGDLSYL-GGE----WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL----------~~~G~I~~~-G~~----~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      ++|++++|+||||+|||||          +++|.|.+. |..    ....+++++|...+++..++.++  ++.+.+.+.
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~--~l~~l~~~e  290 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF--GLWHLEPEQ  290 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--CCCCCCHHH
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--hhcCCCHHH
Confidence            4799999999999999999          357999887 632    34568899887766666666653  333444433


Q ss_pred             ----HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHH
Q 024989           67 ----RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGL   99 (259)
Q Consensus        67 ----~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al   99 (259)
                          +.++++.+++.  .+.++.+|| ||+||++||+++
T Consensus       291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence                34567777774  366788999 999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.09  E-value=2.6e-11  Score=111.09  Aligned_cols=114  Identities=12%  Similarity=0.020  Sum_probs=81.7

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCee------ccccEEEec-ccCCCCccCcHHHHHhccCCCCHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE------WRREVAFAG-FEVPIQMDVSAEKMIFGVAGIDPQR   66 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~------~~~~i~~v~-~~~~~~~~lt~~~~~~~~~~~~~~~   66 (259)
                      +|++++|+||||||||||         +++|.|.+.|..      .++.+++++ |+..                     
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~---------------------  232 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK---------------------  232 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC-------------------------
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccc---------------------
Confidence            689999999999999999         479999998742      122344443 2110                     


Q ss_pred             HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989           67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus        67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                                      ..++++..++..|+.++..+|+.+++|||..       ...+++|..+. ....|++.++|..+
T Consensus       233 ----------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~~  288 (361)
T 2gza_A          233 ----------------EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAGS  288 (361)
T ss_dssp             ----------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECSS
T ss_pred             ----------------cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCCC
Confidence                            0113445688899999999999999999986       24566776654 33457899999965


Q ss_pred             HHhccCCeEEEEeCCe
Q 024989          147 GLENWPSHIVYVAHGK  162 (259)
Q Consensus       147 ~~~~~~drv~~l~~G~  162 (259)
                       +...++|+..+..+.
T Consensus       289 -~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          289 -CELTFERLALMVLQN  303 (361)
T ss_dssp             -HHHHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHHHhcc
Confidence             778899999988774

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.06  E-value=1.5e-10  Score=108.09  Aligned_cols=137  Identities=10%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             CCcE--EEEEcCCCCCccccCC--ceEEEEcCee--------ccccEEEecccCCCCccCcHHHHH-hccCCCCH-----
Q 024989            3 EPEM--VKVLGRSAFHDTALTS--SGDLSYLGGE--------WRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP-----   64 (259)
Q Consensus         3 ~~e~--~~i~G~sG~GKTtL~~--~G~I~~~G~~--------~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~-----   64 (259)
                      +|++  ++|+||||||||||..  .|. .++|.+        .++.++|++|+..+++.+|+.+++ ++. ..+.     
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~-~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~-~~~~~~~~~  116 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT-KFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD-QINKEDSYK  116 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS-CC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc-cccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh-ccccchhhh
Confidence            6899  9999999999999941  122 122211        234689999887777777765533 221 1111     


Q ss_pred             -------HHHHHHHHHc-CCC------ccccC-----------CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHH
Q 024989           65 -------QRRAELIKVL-DID------LSWRM-----------HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA  119 (259)
Q Consensus        65 -------~~~~~~l~~~-~l~------~~~~~-----------~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~  119 (259)
                             +...+++... ++.      .+.++           ..|+-..   +.|+++|..+++++++|+|+..|.+..
T Consensus       117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHH
Confidence                   1233444443 322      12221           2455555   799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989          120 RADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus       120 ~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ...+.+.+++..+..|.+|+.+|.+
T Consensus       194 ~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          194 LTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHHHHcCCcEEecCCC
Confidence            9999999997334579999999875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.04  E-value=3.3e-14  Score=131.82  Aligned_cols=147  Identities=9%  Similarity=-0.007  Sum_probs=98.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------------------CCceEEEEcCeec---------cccE---EEecccCCCCcc
Q 024989            3 EPEMVKVLGRSAFHDTAL---------------------TSSGDLSYLGGEW---------RREV---AFAGFEVPIQMD   49 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------------------~~~G~I~~~G~~~---------~~~i---~~v~~~~~~~~~   49 (259)
                      +|+.++|+|+||+|||||                     +++|.+.+.|..+         .+.+   .++.+.+.++..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            578999999999999988                     2578888887421         1112   233344444444


Q ss_pred             CcHHH-----HHhccCCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHH
Q 024989           50 VSAEK-----MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        50 lt~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~  122 (259)
                      .+..+     ++..++.     ++.++..++...+..+..+|++.            +|  +++++|||+.++|+.....
T Consensus        99 ~s~~e~L~~~fl~~ir~-----~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k  161 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRA-----VDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEK  161 (392)
T ss_dssp             CCSSSSSCHHHHHHHTT-----CSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH-----HHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHH
Confidence            43211     1100010     00111112222234555567653            89  9999999999999999999


Q ss_pred             HHHHHHHH-HHhcCcEEEEEeCChhHHhccCCeEE-EEeCC-eEEEecCh
Q 024989          123 LLRFLRKE-CEERGATIIYATHIFDGLENWPSHIV-YVAHG-KLQLAMPM  169 (259)
Q Consensus       123 ~~~~l~~~-~~~~g~tiii~sH~~~~~~~~~drv~-~l~~G-~i~~~g~~  169 (259)
                      .++.+.+. .+ .|.||+  +|++..+..+|+++. +|.+| +++..++.
T Consensus       162 ~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          162 HLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             HHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            99999887 43 577764  999999999999999 99999 88776654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.99  E-value=2.7e-10  Score=101.67  Aligned_cols=131  Identities=9%  Similarity=0.139  Sum_probs=81.2

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +|++++|+|+||+||||+.         ++|          +++.++..+..   ..+..+           ....+.+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G----------~~V~lv~~D~~---r~~a~e-----------qL~~~~~~  159 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH----------KKIAFITTDTY---RIAAVE-----------QLKTYAEL  159 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------CCEEEEECCCS---STTHHH-----------HHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------CEEEEEecCcc---cchHHH-----------HHHHHHHh
Confidence            5889999999999999983         345          24566655431   111111           11222333


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---hcCcEEEE-EeCChhHHh
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE---ERGATIIY-ATHIFDGLE  149 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~---~~g~tiii-~sH~~~~~~  149 (259)
                      ++++...   ..+ +..-+.+|++  +.+|+++|+|  |+|+|+.....+.++.+ +..   ..+.++++ +||..+.+.
T Consensus       160 ~gl~~~~---~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~  230 (296)
T 2px0_A          160 LQAPLEV---CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMK  230 (296)
T ss_dssp             TTCCCCB---CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHH
T ss_pred             cCCCeEe---cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHH
Confidence            3433111   122 2334555554  4899999999  99999877665555443 322   22334454 499999999


Q ss_pred             ccCCeEEEEeCCeEEEe
Q 024989          150 NWPSHIVYVAHGKLQLA  166 (259)
Q Consensus       150 ~~~drv~~l~~G~i~~~  166 (259)
                      ++|+++..+..+.++.+
T Consensus       231 ~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          231 HIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             HHTTTTSSSCCCEEEEE
T ss_pred             HHHHHHhcCCCCEEEEe
Confidence            99999877777888774

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.99  E-value=5.6e-10  Score=101.86  Aligned_cols=139  Identities=17%  Similarity=0.250  Sum_probs=80.0

Q ss_pred             CCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCccc
Q 024989            3 EPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW   80 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~   80 (259)
                      +|+++.|.||+|||||||.-.  ..+.-.|    ..+.|+..+....                ..    ..+.+++..+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~----------------~~----~a~~lG~~~~~  115 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALD----------------PE----YAKKLGVDTDS  115 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCC----------------HH----HHHHTTCCGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcC----------------HH----HHHHcCCCHHH
Confidence            689999999999999999410  0000001    2344543321110                00    12233332211


Q ss_pred             -cC-CcCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhcCcEEEE
Q 024989           81 -RM-HKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDL----------DV---LARADLLRFLRKE---CEERGATIIY  140 (259)
Q Consensus        81 -~~-~~LSgG~~qrv~ia~al~~~--p~lllLDEPt~gL----------D~---~~~~~~~~~l~~~---~~~~g~tiii  140 (259)
                       .+ ...+.  .|-+.++++++.+  |+++|+|||++.+          |+   ...+.+.+.++++   +++.|+|||+
T Consensus       116 l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~  193 (349)
T 2zr9_A          116 LLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIF  193 (349)
T ss_dssp             CEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             eEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence             11 11232  3456678878654  9999999999998          33   1222344444444   4667999999


Q ss_pred             EeCChh----------------HHhccCCeEEEEeCCeEEEec
Q 024989          141 ATHIFD----------------GLENWPSHIVYVAHGKLQLAM  167 (259)
Q Consensus       141 ~sH~~~----------------~~~~~~drv~~l~~G~i~~~g  167 (259)
                      ++|...                .+..+||.++.++.++.+..|
T Consensus       194 inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g  236 (349)
T 2zr9_A          194 INELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG  236 (349)
T ss_dssp             EEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred             EeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence            999754                256789999998877655443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.96  E-value=7.6e-12  Score=116.78  Aligned_cols=143  Identities=12%  Similarity=0.086  Sum_probs=82.4

Q ss_pred             CCcEEEEEcCCCCCccccC---CceEEEEcCee---ccccEEEecccCCCCccCcHHHH------HhccCCCCHHHHH--
Q 024989            3 EPEMVKVLGRSAFHDTALT---SSGDLSYLGGE---WRREVAFAGFEVPIQMDVSAEKM------IFGVAGIDPQRRA--   68 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---~~G~I~~~G~~---~~~~i~~v~~~~~~~~~lt~~~~------~~~~~~~~~~~~~--   68 (259)
                      .++.++|+|+||||||||.   +.-...+.+.+   ....++++.+...  ..+++.+.      .....+.......  
T Consensus       156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~L~~~fl~~~  233 (416)
T 1udx_A          156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHI  233 (416)
T ss_dssp             CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhhhhHHHHHHH
Confidence            3678999999999999994   22222344432   2334666654320  00111110      0000111111111  


Q ss_pred             ----HHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe-C
Q 024989           69 ----ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT-H  143 (259)
Q Consensus        69 ----~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s-H  143 (259)
                          .++..+++. +.++.+||+|++|++.++++|+..|.++++    |.+|+... ..++.+.+..++.|.+++++| |
T Consensus       234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~  307 (416)
T 1udx_A          234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSAL  307 (416)
T ss_dssp             TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECC
Confidence                122223333 456788999999999999999999999999    99999876 444555555545577776655 4


Q ss_pred             ChhHHhccCC
Q 024989          144 IFDGLENWPS  153 (259)
Q Consensus       144 ~~~~~~~~~d  153 (259)
                      .-+-+.++++
T Consensus       308 ~g~gi~eL~~  317 (416)
T 1udx_A          308 TGAGLPALKE  317 (416)
T ss_dssp             TCTTHHHHHH
T ss_pred             CccCHHHHHH
Confidence            4443443333

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.96  E-value=8.4e-10  Score=103.79  Aligned_cols=80  Identities=11%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             CCcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHhcCcEEEEEeC--------
Q 024989           82 MHKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLD--------VLARADLLRFLRKECEERGATIIYATH--------  143 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD--------~~~~~~~~~~l~~~~~~~g~tiii~sH--------  143 (259)
                      ...+|.++.+  ..++.+.  ++|+++++|+++...+        ......+.+.|+.++++.|++||+++|        
T Consensus       293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~  370 (454)
T 2r6a_A          293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR  370 (454)
T ss_dssp             CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC
T ss_pred             CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence            4578999876  4556665  6899999999998773        344567888888888888999999999        


Q ss_pred             -C--hh--------HHhccCCeEEEEeCCeE
Q 024989          144 -I--FD--------GLENWPSHIVYVAHGKL  163 (259)
Q Consensus       144 -~--~~--------~~~~~~drv~~l~~G~i  163 (259)
                       +  +.        .+++.||.|++|..++.
T Consensus       371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence             2  22        57788999999987764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.94  E-value=4e-10  Score=106.95  Aligned_cols=157  Identities=12%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeec--------------cccEEEecccCCCCccCcHHHHHh-c
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW--------------RREVAFAGFEVPIQMDVSAEKMIF-G   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~--------------~~~i~~v~~~~~~~~~lt~~~~~~-~   58 (259)
                      +|++++|+|+||||||||.         ++|+|.+.|.+.              ++.++|++|....++.+++.+++. .
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            5899999999999999993         789999987542              234789988766666666655432 1


Q ss_pred             c-CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc-cCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           59 V-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-KPF-KVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        59 ~-~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~-~~p-~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      . .+.+    .-+++..|....+  ..|-.-.+|++.+++++. ..| ++||...|++|.|..      +.++.+.+..|
T Consensus       372 ~~~~~D----vVLIDTaGrl~~~--~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~  439 (503)
T 2yhs_A          372 KARNID----VLIADTAGRLQNK--SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVG  439 (503)
T ss_dssp             HHTTCS----EEEECCCCSCCCH--HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTC
T ss_pred             HhcCCC----EEEEeCCCccchh--hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcC
Confidence            1 1111    0011222221110  111123357888898774 446 355555599987654      33444444468


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEe--CCeEEEecChhHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVA--HGKLQLAMPMDKV  172 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~--~G~i~~~g~~~~~  172 (259)
                      .|.|++|| ++........+.++.  +..|.+.|..+.+
T Consensus       440 itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v  477 (503)
T 2yhs_A          440 LTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI  477 (503)
T ss_dssp             CSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence            99999999 555444333333332  2344444444333

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.92  E-value=1e-11  Score=115.95  Aligned_cols=104  Identities=10%  Similarity=0.032  Sum_probs=68.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEec---------ccCCC--Ccc-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAG---------FEVPI--QMD-   49 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~---------~~~~~--~~~-   49 (259)
                      +|++++|+||||||||||         +++|+|.+.+.++.            .++++.+         |++..  +.. 
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi  245 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI  245 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence            689999999999999999         37899999886531            1233322         44433  122 


Q ss_pred             ---CcHHHHH-h---c------cCCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEE
Q 024989           50 ---VSAEKMI-F---G------VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL  108 (259)
Q Consensus        50 ---lt~~~~~-~---~------~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllL  108 (259)
                         .|+.+.+ +   +      ++..+.......+..+++.....+.+|||||+||  ||++|+.+|++..-
T Consensus       246 Rd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          246 RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             CCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence               3454432 1   1      1112222333356667776444678999999999  99999999998763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.88  E-value=8.5e-10  Score=98.95  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +|++++|+|+|||||||+.         +.|+|.+.+.+..+.              ..           .+....+.+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------------~a-----------~eqL~~~~~~  157 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------------AA-----------IEQLKIWGER  157 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------------HH-----------HHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------------HH-----------HHHHHHHHHH
Confidence            5789999999999999983         455666655442110              00           0123345556


Q ss_pred             cCCCccccCCcCCHHHHHHH---HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           74 LDIDLSWRMHKVSDGQRRRV---QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv---~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      ++++.   +..+|+|+.+++   +|++++..+|+++|+|||..   ......+++.+.++
T Consensus       158 ~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l  211 (306)
T 1vma_A          158 VGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV  211 (306)
T ss_dssp             HTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred             cCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence            66542   346789999999   89999999999999999974   23344555555544

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.86  E-value=2.9e-12  Score=122.56  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=46.1

Q ss_pred             CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE--EeCChhHHhccCC
Q 024989           83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY--ATHIFDGLENWPS  153 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii--~sH~~~~~~~~~d  153 (259)
                      ..+|+||+||++++          ++ | |+||||...+.+++.|.++.. .|.|+++  +||+++++...|+
T Consensus       399 ~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          399 MWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             EEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHT
T ss_pred             EEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcC
Confidence            46899999987764          12 7 999999888878887877653 4889985  9999999998874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.85  E-value=1.6e-10  Score=104.90  Aligned_cols=125  Identities=10%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeec------------cccEEEecccCCCCccCc----------
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW------------RREVAFAGFEVPIQMDVS----------   51 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt----------   51 (259)
                      +|++++|+||||||||||.         ++|+|.+.|.+.            +..+++++|++.+|...+          
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t  133 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA  133 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence            6899999999999999993         589999998654            234677777765553211          


Q ss_pred             --HHH-H--H--h----------c-----------------cCCC-CHHHHH----HHHHHcC---CC-ccc-cCCcCCH
Q 024989           52 --AEK-M--I--F----------G-----------------VAGI-DPQRRA----ELIKVLD---ID-LSW-RMHKVSD   87 (259)
Q Consensus        52 --~~~-~--~--~----------~-----------------~~~~-~~~~~~----~~l~~~~---l~-~~~-~~~~LSg   87 (259)
                        ..+ .  +  .          |                 +... ..+..+    .+.+...   ++ .+. ....+|+
T Consensus       134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          134 AKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHH
Confidence              000 0  0  0          0                 0000 001110    1122222   22 121 2356899


Q ss_pred             HHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           88 GQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        88 G~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      |++|++..+++++.      .|++++    ||++|+.....+++.|.++.
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999987      688876    99999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.84  E-value=2.2e-10  Score=102.44  Aligned_cols=96  Identities=15%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             CCCcEEEEEcCCCCCcccc--------CCceEEEE---cCeec-------c-ccEEEecccCCCC-----ccCcHHHH--
Q 024989            2 VEPEMVKVLGRSAFHDTAL--------TSSGDLSY---LGGEW-------R-REVAFAGFEVPIQ-----MDVSAEKM--   55 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL--------~~~G~I~~---~G~~~-------~-~~i~~v~~~~~~~-----~~lt~~~~--   55 (259)
                      ++|++++|+||||||||||        +++|+|.+   .|.+.       . +.+||++|.+.++     +.+|++++  
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~~  242 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLTGEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVRN  242 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHHSCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGGG
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHHH
Confidence            5789999999999999998        47999999   88643       1 2579998887553     56777544  


Q ss_pred             Hhc--------cCC-----CCHHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHH
Q 024989           56 IFG--------VAG-----IDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICM   97 (259)
Q Consensus        56 ~~~--------~~~-----~~~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~   97 (259)
                      .+.        +.+     ....++.++++.+++..   ++++..|||.+++++.|||
T Consensus       243 ~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          243 YFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222        121     11245788999999863   4568899998889999886

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.81  E-value=1e-08  Score=91.22  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=67.5

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV   73 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~   73 (259)
                      +|++++|+|+||+||||+.         ..|+|.+.+.+..+.             ...+            ....+.+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~-------------~~~~------------ql~~~~~~  151 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP-------------AARE------------QLRLLGEK  151 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH-------------HHHH------------HHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH-------------hHHH------------HHHHhccc
Confidence            5899999999999999993         466776665553221             0000            01122334


Q ss_pred             cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 024989           74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI-TVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP-t~gLD~~~~~~~~~~l~~~  130 (259)
                      .+++.-......+-.+.+|.+|+.+...+++++|+||| +.++|......+.++....
T Consensus       152 ~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~  209 (295)
T 1ls1_A          152 VGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL  209 (295)
T ss_dssp             HTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence            45431100011233345788999998899999999999 9999998888887776643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.80  E-value=2.7e-11  Score=102.00  Aligned_cols=139  Identities=16%  Similarity=0.050  Sum_probs=72.8

Q ss_pred             CCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHH-h---ccC-CCCHHHHHHHHHHcC
Q 024989            3 EPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F---GVA-GIDPQRRAELIKVLD   75 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~---~~~-~~~~~~~~~~l~~~~   75 (259)
                      +|++++|+||||||||||..  .|...-.|    ..+++++++...+......+.. .   +.. ..+.....+.+..+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~   96 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSAQG----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK   96 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHHTT----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcC----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence            68999999999999999941  00000000    1244444332221111010100 0   000 112233333443331


Q ss_pred             ----C--CccccCCcCCHHHHHHHHHH-HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-
Q 024989           76 ----I--DLSWRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG-  147 (259)
Q Consensus        76 ----l--~~~~~~~~LSgG~~qrv~ia-~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~-  147 (259)
                          +  ........+|+||+|+++++ ++++.++.++++|||.           |..+.+.    --.++++++..+. 
T Consensus        97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~----~d~~i~vd~~~~~~  161 (208)
T 3c8u_A           97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAI----WDVSIRLEVPMADL  161 (208)
T ss_dssp             HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGT----CSEEEEECCCHHHH
T ss_pred             cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHh----cCEEEEEeCCHHHH
Confidence                1  11223346799999999887 7777777777788873           1122222    2368888888876 


Q ss_pred             HhccCCeEEEEeCCe
Q 024989          148 LENWPSHIVYVAHGK  162 (259)
Q Consensus       148 ~~~~~drv~~l~~G~  162 (259)
                      +.+++.|.  +..|.
T Consensus       162 ~~R~~~R~--~~~g~  174 (208)
T 3c8u_A          162 EARLVQRW--LDHGL  174 (208)
T ss_dssp             HHHHHHHH--HHTTC
T ss_pred             HHHHHHHH--HhcCC
Confidence            56666662  34454

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.78  E-value=7.4e-11  Score=106.58  Aligned_cols=127  Identities=17%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             cEEEEEcCCCCCccccC-------------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc---cC
Q 024989            5 EMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG---VA   60 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~---~~   60 (259)
                      +.++|+||||+|||||.             ++|.+...+.++        ...+.|+.+...++.  ++.+.++.   ..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~  129 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF  129 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc
Confidence            78999999999999993             345544444332        235788866544443  45554321   11


Q ss_pred             CC--------CHHHHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           61 GI--------DPQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        61 ~~--------~~~~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ..        ..+.+...+..+++. ...++..||+|++||+.++                .+||+.....+.++|++.+
T Consensus       130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~  193 (334)
T 1in4_A          130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAA  193 (334)
T ss_dssp             CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred             ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence            11        112223334444432 3456789999999998654                7888888899999999877


Q ss_pred             HhcCcEEEEEeCChhHHhccCCe
Q 024989          132 EERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~dr  154 (259)
                      +..|     ++|+.+.+..+|++
T Consensus       194 ~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          194 SLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             HHTT-----CCBCHHHHHHHHHT
T ss_pred             HHcC-----CCcCHHHHHHHHHh
Confidence            6555     36888888888775

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.71  E-value=1.1e-11  Score=104.07  Aligned_cols=57  Identities=7%  Similarity=0.016  Sum_probs=41.7

Q ss_pred             HHH-HHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989           95 ICM-GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  160 (259)
Q Consensus        95 ia~-al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~  160 (259)
                      .++ +++.+|.+++|||||+++|..+...+.+.|.+..++     +.++|.  .  ..+|+|+++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence            455 677888888899999999998888898888776543     234551  1  56899877653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.56  E-value=4.4e-11  Score=105.50  Aligned_cols=116  Identities=14%  Similarity=0.011  Sum_probs=69.0

Q ss_pred             EEEEcCCCCCccccC-------CceEEEEcCeecc--------ccEEEecccC-CCCccCcHHHHHhccCCCCHHHHHHH
Q 024989            7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWR--------REVAFAGFEV-PIQMDVSAEKMIFGVAGIDPQRRAEL   70 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~--------~~i~~v~~~~-~~~~~lt~~~~~~~~~~~~~~~~~~~   70 (259)
                      ++|+||||||||||.       ..|.|.++|.++.        +.++++++.. ..++.+++.+.+..... ... ... 
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~-~r~-~~~-  123 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP-RRS-DRE-  123 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc-ccC-CCc-
Confidence            899999999999993       4678999886542        2344555442 22233222211110100 000 000 


Q ss_pred             HHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC------------CCCHHHHHHHHHHH
Q 024989           71 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV------------DLDVLARADLLRFL  127 (259)
Q Consensus        71 l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~------------gLD~~~~~~~~~~l  127 (259)
                      .....-..++.+.+|||||+||+.|++|+.++|++|  |||+.            --|...+..+++.+
T Consensus       124 ~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          124 TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             ---CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            000000023456789999999999999999999985  99864            34777777766654

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.55  E-value=7.7e-10  Score=105.61  Aligned_cols=153  Identities=14%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             CCcEEEEEcCCCCCccccC-----------CceEEEEcCeeccccEEEeccc--CCCCcc-Cc-HHHHHhccCCC--CHH
Q 024989            3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEWRREVAFAGFE--VPIQMD-VS-AEKMIFGVAGI--DPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~~~~i~~v~~~--~~~~~~-lt-~~~~~~~~~~~--~~~   65 (259)
                      ++..+.|.|++||||||+.           +.|++.+.+.|... ..+....  +.+... .+ ..+....+...  .-+
T Consensus       166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~~~L~~~~~Eme  244 (512)
T 2ius_A          166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAANALRWCVNEME  244 (512)
T ss_dssp             GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHHHHHHHHHHHHH
Confidence            4678999999999999972           45777776665432 1111111  011000 01 11111000000  011


Q ss_pred             HHHHHHHHcCCC-c---cc-cCCcCCHHHHHHH----------HHHHHHccCCc-EEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           66 RRAELIKVLDID-L---SW-RMHKVSDGQRRRV----------QICMGLLKPFK-VLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        66 ~~~~~l~~~~l~-~---~~-~~~~LSgG~~qrv----------~ia~al~~~p~-lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      +..+++...++. .   +. ....+|+||+|+.          .+++++...|. ++++||+++-++.. ...+.+.|.+
T Consensus       245 rR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~  323 (512)
T 2ius_A          245 RRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIAR  323 (512)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHH
Confidence            223566666653 1   11 1235788887752          35566777898 89999999988733 2334444443


Q ss_pred             ---HHHhcCcEEEEEeCChh-------HHhccCCeEEE
Q 024989          130 ---ECEERGATIIYATHIFD-------GLENWPSHIVY  157 (259)
Q Consensus       130 ---~~~~~g~tiii~sH~~~-------~~~~~~drv~~  157 (259)
                         ..+..|.++|++||..+       ...++.+||.+
T Consensus       324 Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          324 LAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence               34455899999999987       45677777766

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.52  E-value=1.4e-08  Score=82.41  Aligned_cols=52  Identities=13%  Similarity=0.082  Sum_probs=40.0

Q ss_pred             CCCcEEEEEcCCCCCcccc--------CCceEEEEcCeecccc---EEEecccCCCCccCcHHH
Q 024989            2 VEPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEWRRE---VAFAGFEVPIQMDVSAEK   54 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~~~~---i~~v~~~~~~~~~lt~~~   54 (259)
                      -+||+++|+||||||||||        +++|+|.+.|.++...   ..+++|+..+| .+|+.+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e   93 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE   93 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence            3789999999999999998        5899999999765211   12677777777 777644

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.36  E-value=5.7e-08  Score=80.88  Aligned_cols=122  Identities=11%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCCccccCC----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcccc
Q 024989            6 MVKVLGRSAFHDTALTS----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR   81 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~   81 (259)
                      +++|+|++||||||+..    -|...+++                      ..+.............++.+.+|...   
T Consensus         4 ~i~l~G~~GsGKST~~~~La~lg~~~id~----------------------d~~~~~~~~~~~~~~~~i~~~~g~~~---   58 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDLGVPLVDA----------------------DVVAREVVAKDSPLLSKIVEHFGAQI---   58 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTTTCCEEEH----------------------HHHHHHTTCSSCHHHHHHHHHHCTTC---
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCcccch----------------------HHHHHHHccCChHHHHHHHHHhCHHH---
Confidence            68999999999999842    22222221                      11110000001123456666676431   


Q ss_pred             CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH--hccCCeEEEEe
Q 024989           82 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL--ENWPSHIVYVA  159 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~--~~~~drv~~l~  159 (259)
                        -.|.|+.+|..++..+..+|+.+..+  .+.++|..+..+.+.+...   .+.++|+.+|.+.+.  ...||.+++++
T Consensus        59 --~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A           59 --LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             --C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred             --hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence              13678899999999888888654333  4466777777766665432   256899999998776  67789888874

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.35  E-value=3.9e-07  Score=91.09  Aligned_cols=74  Identities=19%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCChhHHhccCCeE
Q 024989           81 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYA-THIFDGLENWPSHI  155 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~-sH~~~~~~~~~drv  155 (259)
                      .+.-+|.|+.+|..++..++.+++++|+|||.. +||......+++.+..... ...+|++| ||+.+.+.++++..
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~  262 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA  262 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence            456789999999999999999999999999996 9998777666666655432 35677885 99998888777753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.34  E-value=3.2e-08  Score=88.14  Aligned_cols=85  Identities=11%  Similarity=0.032  Sum_probs=49.3

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEE---cCeecc--------ccEEEecccCCC---------------
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSY---LGGEWR--------REVAFAGFEVPI---------------   46 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~---~G~~~~--------~~i~~v~~~~~~---------------   46 (259)
                      ++|++++|+||||||||||         +++|+|.+   .|.+..        +.++|++|.+.+               
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~  246 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH  246 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence            4689999999999999999         48999999   776431        247888887642               


Q ss_pred             -CccCcHHHHH-hc-c-C-CCCHHHHHHHHHHcCCC---ccccCCcCCH
Q 024989           47 -QMDVSAEKMI-FG-V-A-GIDPQRRAELIKVLDID---LSWRMHKVSD   87 (259)
Q Consensus        47 -~~~lt~~~~~-~~-~-~-~~~~~~~~~~l~~~~l~---~~~~~~~LSg   87 (259)
                       ++.+++ +++ +. . + .....++.++++.++|.   .++++..||.
T Consensus       247 l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          247 YFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             GSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence             445554 322 11 1 1 11224578899999985   2456677774

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.34  E-value=2.4e-07  Score=76.25  Aligned_cols=38  Identities=11%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             HHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           91 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        91 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      +.+.+|++++.+|+++++|  |+++|+.+..++++.|.+.
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            4477899999999999999  9999999999999988653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.32  E-value=3e-08  Score=88.51  Aligned_cols=100  Identities=9%  Similarity=0.038  Sum_probs=58.3

Q ss_pred             CCcEEEEEcCCCCCccccC-----------CceEEEE---cCeec----cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTALT-----------SSGDLSY---LGGEW----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~---~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~   64 (259)
                      +|++++|+||||||||||.           ++|+|.+   +|...    ++.++++ |...+++.+++.++..       
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~-------  150 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVK-------  150 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHH-------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHH-------
Confidence            6899999999999999992           5789999   77543    2235555 4444445555543221       


Q ss_pred             HHHHHHHHHc-C-CC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989           65 QRRAELIKVL-D-ID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  117 (259)
Q Consensus        65 ~~~~~~l~~~-~-l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~  117 (259)
                           .+..+ . -. ...+....+.+  +|+..+.+.+.+|+++|+|.|....++
T Consensus       151 -----~~~~l~~~~~~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          151 -----FVSDLKSGVPNVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             -----HHHHHTTTCSCEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             -----HHHHHhCCCCceeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence                 11111 1 01 11222223322  333333345567899999999998874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.31  E-value=3.5e-08  Score=88.45  Aligned_cols=91  Identities=11%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEE---cCeec-------cccEEEecccCCCCc----cCcHHHHH--
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSY---LGGEW-------RREVAFAGFEVPIQM----DVSAEKMI--   56 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~---~G~~~-------~~~i~~v~~~~~~~~----~lt~~~~~--   56 (259)
                      .+|++++|+||||+|||||         +++|+|.+   .|+..       ...++|++|.+.+..    .++++++.  
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~e~l~~~  250 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGYT  250 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHHHGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCHHHHHHH
Confidence            4799999999999999999         37899998   66532       112688988876644    56664441  


Q ss_pred             hc----------cCC-----CCHHHHHHHHHHcCCCc--cccCCcCCHHHHHH
Q 024989           57 FG----------VAG-----IDPQRRAELIKVLDIDL--SWRMHKVSDGQRRR   92 (259)
Q Consensus        57 ~~----------~~~-----~~~~~~~~~l~~~~l~~--~~~~~~LSgG~~qr   92 (259)
                      +.          +.+     .....+.++++.+++..  .....+|+.|++||
T Consensus       251 f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          251 FPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             SHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            11          011     11235778999998863  34556777788773

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.30  E-value=2.3e-06  Score=76.73  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHc---cCCcEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           90 RRRVQICMGLL---KPFKVLLLDEITVDLDV--------L----ARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        90 ~qrv~ia~al~---~~p~lllLDEPt~gLD~--------~----~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      .+.+..++.++   .+|+++|+|+.++-...        .    ....++..|+.++++.|.+||+++|-...
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~  260 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR  260 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence            35666777777   67999999999875532        1    13456666777777789999999986543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.27  E-value=2.8e-06  Score=77.51  Aligned_cols=69  Identities=14%  Similarity=0.218  Sum_probs=45.1

Q ss_pred             HHHHHHHHc--cCCcEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------
Q 024989           92 RVQICMGLL--KPFKVLLLDEITVDLD----------------VLARADLLRFLRKECEERGATIIYATHIF--------  145 (259)
Q Consensus        92 rv~ia~al~--~~p~lllLDEPt~gLD----------------~~~~~~~~~~l~~~~~~~g~tiii~sH~~--------  145 (259)
                      -+.+++.++  .+|+++++|+-++-..                ......++..|..++++.|.|||++.|-.        
T Consensus       127 ~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg  206 (356)
T 3hr8_A          127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFG  206 (356)
T ss_dssp             HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSC
T ss_pred             HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccC
Confidence            344455443  4688888887654443                11223455666677777899999999972        


Q ss_pred             --------hHHhccCCeEEEEeC
Q 024989          146 --------DGLENWPSHIVYVAH  160 (259)
Q Consensus       146 --------~~~~~~~drv~~l~~  160 (259)
                              .-++.++|.++.++.
T Consensus       207 ~p~~~~GG~~l~h~~~~rl~l~k  229 (356)
T 3hr8_A          207 SPETTTGGLALKFYATMRMEVRR  229 (356)
T ss_dssp             SCSSCTHHHHHHHHCSEEEEEEE
T ss_pred             CcccCCCcchhhhhCcEEEEEEe
Confidence                    225678888888875

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.27  E-value=3e-06  Score=76.66  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=47.0

Q ss_pred             HHHHHHHHHc----cCCcEEEEeCCCCCCCHH------------HHHHHHHHHHHHHHhcCcEEEEEeCChhH-------
Q 024989           91 RRVQICMGLL----KPFKVLLLDEITVDLDVL------------ARADLLRFLRKECEERGATIIYATHIFDG-------  147 (259)
Q Consensus        91 qrv~ia~al~----~~p~lllLDEPt~gLD~~------------~~~~~~~~l~~~~~~~g~tiii~sH~~~~-------  147 (259)
                      +.+..++.++    .+++++++|+.++-....            ....+...|..++++.|.+||+++|....       
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~  283 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF  283 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCcccc
Confidence            4444455555    679999999999866432            13456666777777789999999997543       


Q ss_pred             ------------HhccCCeEEEEeC
Q 024989          148 ------------LENWPSHIVYVAH  160 (259)
Q Consensus       148 ------------~~~~~drv~~l~~  160 (259)
                                  +...+|-++.|+.
T Consensus       284 ~g~~~~~~gg~~i~~~ad~~l~l~r  308 (343)
T 1v5w_A          284 QADPKKPIGGHILAHASTTRISLRK  308 (343)
T ss_dssp             ---------CCTTTTSSSEEEEEEE
T ss_pred             CCCCCcCCchHHHHHhCCEEEEEEE
Confidence                        3455677777764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.23  E-value=1.6e-06  Score=78.57  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=74.3

Q ss_pred             CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH-cCCCc
Q 024989            2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-LDIDL   78 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~-~~l~~   78 (259)
                      .+|+++.|.|++|+|||||...  ..+...|    ..+.|+..      .++..++.           .+++.. .+++.
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g----~~Vl~fSl------Ems~~ql~-----------~Rlls~~~~v~~  102 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDD----RGVAVFSL------EMSAEQLA-----------LRALSDLTSINM  102 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----CEEEEEES------SSCHHHHH-----------HHHHHHHHCCCH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEeC------CCCHHHHH-----------HHHHHHhhCCCH
Confidence            4799999999999999999410  0000011    23444432      23333322           122211 23332


Q ss_pred             c-ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCC
Q 024989           79 S-WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-GATIIYATHI  144 (259)
Q Consensus        79 ~-~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~-g~tiii~sH~  144 (259)
                      . -+-+.||.++.+|+..|...+.+++++|.|+|...++     .+...++++.++. |..+|++-|-
T Consensus       103 ~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~~~gg~~lIVIDyL  165 (338)
T 4a1f_A          103 HDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKSQHKELGIAFIDYL  165 (338)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHHhcCCCCEEEEech
Confidence            1 1225899999999999999999999999999975533     5666666666666 7888888653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.17  E-value=1.7e-06  Score=78.57  Aligned_cols=64  Identities=6%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe--CChh
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLD-EITVDLDVLARADLLRFLRKECEERGATIIYAT--HIFD  146 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLD-EPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s--H~~~  146 (259)
                      .++..+|+|++|++. +.+...++-++++| +|+.++|......++..+.+...  +..+|++.  ||+.
T Consensus       227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~  293 (357)
T 2e87_A          227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA  293 (357)
T ss_dssp             SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred             cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence            456789999998876 55555677899999 99999999988888777766532  67888888  8874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.13  E-value=4.3e-06  Score=79.12  Aligned_cols=63  Identities=19%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHccCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHh
Q 024989           87 DGQRRRVQICMGLLKPFKVLLLDEI----------TVDLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE  149 (259)
Q Consensus        87 gG~~qrv~ia~al~~~p~lllLDEP----------t~gLD~~~~~~~~~~l~~~~---~~~g~tiii~sH~~~~~~  149 (259)
                      +++++|..+++|....|.+|++||+          +.|.|+...+.+.+++..+-   ...+..||.+||..+.+.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence            6778889999999999999999999          34677766666666666542   234788999999986543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.06  E-value=6.5e-06  Score=74.12  Aligned_cols=53  Identities=13%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hcCcEEEEEeCChhHHhccCCe
Q 024989          101 KPFKVLLLDEITVDLDVLARADLLRFLRKECE--ERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~--~~g~tiii~sH~~~~~~~~~dr  154 (259)
                      .+|.+|++||+... |+.....+..++.++..  ..+.++|++||+.+....+.++
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~  178 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS  178 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence            56889999999876 88888888888765532  1478999999998765555443

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.03  E-value=6e-06  Score=73.80  Aligned_cols=117  Identities=13%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH-cCCCc
Q 024989            2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-LDIDL   78 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~-~~l~~   78 (259)
                      .+|+++.|.|++|+|||||...  ..+...|    ..+.|+..+      ++..++.           .+++.. .+++.
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g----~~vl~~slE------~s~~~l~-----------~R~~~~~~~i~~  124 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSLE------MGKKENI-----------KRLIVTAGSINA  124 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT----CEEEEEESS------SCHHHHH-----------HHHHHHHTTCCH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEECC------CCHHHHH-----------HHHHHHHcCCCH
Confidence            4799999999999999999410  0000011    234454322      3332221           222221 23321


Q ss_pred             c-ccCCc--CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE--EEEEeCC
Q 024989           79 S-WRMHK--VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT--IIYATHI  144 (259)
Q Consensus        79 ~-~~~~~--LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t--iii~sH~  144 (259)
                      . -+-+.  ||.++++|+..|...+.++++++.|+|...+     ..+...++++.++.|..  +|++-|-
T Consensus       125 ~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          125 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIWSKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             HHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence            1 11223  9999999999999999999999999997443     34666666666666777  8888874

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.00  E-value=8e-07  Score=86.31  Aligned_cols=47  Identities=23%  Similarity=0.242  Sum_probs=40.0

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           82 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      .+.+|+|++|++..++....++.+|+|||... |++..+..+++.|.+
T Consensus       181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            36799999999999999999999999999988 899988888888864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.95  E-value=3.6e-06  Score=69.23  Aligned_cols=37  Identities=11%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             HHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           93 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        93 v~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      ...|++++.+|+++++|  |+++|+.+...+++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999  99999999999999887754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.89  E-value=9.6e-09  Score=89.92  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=56.5

Q ss_pred             EEEEcCCCCCccccC-------CceEEEEcCeecc--------ccEEEecccCC-CCccCcH-HHH--HhccCCC----C
Q 024989            7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWR--------REVAFAGFEVP-IQMDVSA-EKM--IFGVAGI----D   63 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~--------~~i~~v~~~~~-~~~~lt~-~~~--~~~~~~~----~   63 (259)
                      +.|+||||||||||.       ..|.|.++|.++.        +.+++++|... .++.+++ +++  +......    .
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~  155 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG  155 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence            899999999999993       6788888876431        22444444432 2233332 222  1111100    0


Q ss_pred             HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 024989           64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI  111 (259)
Q Consensus        64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP  111 (259)
                      .+...+.+.       +.+..|||||+||+.+++|+.++|++  +|++
T Consensus       156 ~~~~~~~~~-------~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~  194 (278)
T 1iy2_A          156 NDEREQTLN-------QLLVEMDGFEKDTAIVVMAATNRPDI--LDPA  194 (278)
T ss_dssp             CHHHHHHHH-------HHHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred             chHHHHHHH-------HHHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence            011122221       12457899999999999999999987  5654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.85  E-value=2.5e-06  Score=77.98  Aligned_cols=62  Identities=11%  Similarity=0.118  Sum_probs=45.0

Q ss_pred             HHHHHHcCCC--c----cccCCcCCHHHHHHHHHH----HHH-ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           68 AELIKVLDID--L----SWRMHKVSDGQRRRVQIC----MGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        68 ~~~l~~~~l~--~----~~~~~~LSgG~~qrv~ia----~al-~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .++++.+++.  .    ..++..+|+|++|++.++    +++ ..+|++    +|+|++|..+...+++.|.+....
T Consensus       282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence            4566666542  1    245667898888888877    555 444554    899999999999999999886543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.83  E-value=0.00015  Score=65.96  Aligned_cols=74  Identities=16%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             HHHHHHHHHc--cCCcEEEEeCCCCCCCHH-------------HH---HHHHHHHHHHHHhcCcEEEEEeCChhH-----
Q 024989           91 RRVQICMGLL--KPFKVLLLDEITVDLDVL-------------AR---ADLLRFLRKECEERGATIIYATHIFDG-----  147 (259)
Q Consensus        91 qrv~ia~al~--~~p~lllLDEPt~gLD~~-------------~~---~~~~~~l~~~~~~~g~tiii~sH~~~~-----  147 (259)
                      +-+.+++.++  .+++++|+|.+++-....             ..   ..++..|..++++.|++||+++|-...     
T Consensus       128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f  207 (356)
T 1u94_A          128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF  207 (356)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred             HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            3455666664  689999999998866311             11   223333444456779999999996432     


Q ss_pred             -----------HhccCCeEEEEeCCeEE
Q 024989          148 -----------LENWPSHIVYVAHGKLQ  164 (259)
Q Consensus       148 -----------~~~~~drv~~l~~G~i~  164 (259)
                                 +..++|-++.++..+..
T Consensus       208 g~~~~~~gG~~l~~~advrl~l~r~~~~  235 (356)
T 1u94_A          208 GNPETTTGGNALKFYASVRLDIRRIGAV  235 (356)
T ss_dssp             -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred             CCCcccCCCcceeeeccEEEEEEEeeee
Confidence                       45578888877765443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.83  E-value=2.1e-05  Score=73.54  Aligned_cols=19  Identities=16%  Similarity=0.225  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|.+++++||+||||||+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~  114 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTA  114 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            4789999999999999984

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.80  E-value=1.4e-08  Score=87.51  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             EEEEcCCCCCccccC-------CceEEEEcCeecc--------ccEEEecccCC-CCccCcH-HHH--HhccCCC----C
Q 024989            7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWR--------REVAFAGFEVP-IQMDVSA-EKM--IFGVAGI----D   63 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~--------~~i~~v~~~~~-~~~~lt~-~~~--~~~~~~~----~   63 (259)
                      +.|+||||||||||.       ..|.+.+.|.++.        +.+++++|... ..+.+++ +++  +......    .
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~  131 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG  131 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence            899999999999993       6788888875431        22334444322 2223322 222  1111100    0


Q ss_pred             HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 024989           64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT  112 (259)
Q Consensus        64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt  112 (259)
                      .+...+.+.       +.+..|||||+||+.+++|+.++|++  +|++.
T Consensus       132 ~~~~~~~~~-------~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l  171 (254)
T 1ixz_A          132 NDEREQTLN-------QLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL  171 (254)
T ss_dssp             CHHHHHHHH-------HHHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred             chHHHHHHH-------HHHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence            011112221       12357899999999999999999987  67764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.77  E-value=5.6e-06  Score=68.22  Aligned_cols=52  Identities=10%  Similarity=0.031  Sum_probs=33.9

Q ss_pred             CCCCcEEEEEcCCCCCccccCC-----ceEEEEcCeec--------cccEEEecccCCCCccCcH
Q 024989            1 MVEPEMVKVLGRSAFHDTALTS-----SGDLSYLGGEW--------RREVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~~-----~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~   52 (259)
                      |-+|++++|+||||||||||..     ...+.+.+...        ...++|++|++..+..+++
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK   68 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence            4589999999999999999931     12566666432        2235677666555544443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.72  E-value=1e-05  Score=75.69  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             cCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEE-EeCCeEEEecCh
Q 024989          101 KPFKVLLLDEITVDLDV-LARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVY-VAHGKLQLAMPM  169 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~-~~~~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~-l~~G~i~~~g~~  169 (259)
                      .+|++|++||+..-.+. ..+..++..+..+. +.|+.||++||+. .++..+.+++.- +..|.++...++
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p  263 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP  263 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence            48999999999876664 67778889888775 4588999999983 434344455443 455666554444

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.68  E-value=1.7e-05  Score=70.94  Aligned_cols=52  Identities=17%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCChhHHhccCC
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKEC--EERGATIIYATHIFDGLENWPS  153 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~--~~~g~tiii~sH~~~~~~~~~d  153 (259)
                      .|.+|++||+....+......+..+++...  ...+.++|++||+.+....+.+
T Consensus       128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~  181 (386)
T 2qby_A          128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDP  181 (386)
T ss_dssp             SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTT
T ss_pred             CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCH
Confidence            488999999977553211122333332221  2346889999999875554443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.67  E-value=3.9e-07  Score=83.85  Aligned_cols=111  Identities=11%  Similarity=-0.004  Sum_probs=61.1

Q ss_pred             CCcEEEEEcCCCCCccccC------CceEEEEcCee---ccccEEEecccCC-CCccCcHHHH-HhccCCCCH----HHH
Q 024989            3 EPEMVKVLGRSAFHDTALT------SSGDLSYLGGE---WRREVAFAGFEVP-IQMDVSAEKM-IFGVAGIDP----QRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~---~~~~i~~v~~~~~-~~~~lt~~~~-~~~~~~~~~----~~~   67 (259)
                      +|++++|+||||||||||.      .+|.+......   +...+++++|... ++.+.+.... ..+......    ..+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~~~~l  247 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL  247 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchHHHHH
Confidence            6899999999999999994      57777652211   1112444444432 1122211100 000000000    111


Q ss_pred             HHHHHH-----cC----------CC---ccccCCcCCHHHHHHHHHHHHHccCCcEEE-EeCCCC
Q 024989           68 AELIKV-----LD----------ID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLL-LDEITV  113 (259)
Q Consensus        68 ~~~l~~-----~~----------l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lll-LDEPt~  113 (259)
                      ...++-     +.          +.   .+.....+++|++||+..+.+++..|++++ ||+|+.
T Consensus       248 ~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~  312 (377)
T 1svm_A          248 RDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF  312 (377)
T ss_dssp             HHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred             HHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence            223320     00          11   234556789999999998888888898887 888876

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.67  E-value=7.3e-05  Score=66.52  Aligned_cols=69  Identities=12%  Similarity=0.202  Sum_probs=44.4

Q ss_pred             HHHHHHHc---cCCcEEEEeCCCCCCC--------HH----HHHHHHHHHHHHHHhcCcEEEEEeCChh-----------
Q 024989           93 VQICMGLL---KPFKVLLLDEITVDLD--------VL----ARADLLRFLRKECEERGATIIYATHIFD-----------  146 (259)
Q Consensus        93 v~ia~al~---~~p~lllLDEPt~gLD--------~~----~~~~~~~~l~~~~~~~g~tiii~sH~~~-----------  146 (259)
                      +..+..++   .+++++|+|.-++-..        ..    ....+...|+.++++.|.+||++.|-..           
T Consensus       192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~  271 (322)
T 2i1q_A          192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQ  271 (322)
T ss_dssp             HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCE
T ss_pred             HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcC
Confidence            33444444   4689999998775321        11    1245566677777788999999988432           


Q ss_pred             -----HHhccCCeEEEEeCC
Q 024989          147 -----GLENWPSHIVYVAHG  161 (259)
Q Consensus       147 -----~~~~~~drv~~l~~G  161 (259)
                           .+...+|.++.|+..
T Consensus       272 ~~g~~~~~~~~d~~i~l~~~  291 (322)
T 2i1q_A          272 AIGGHIVGHAATFRFFVRKG  291 (322)
T ss_dssp             ESSHHHHHHHCSEEEEEEEC
T ss_pred             CCCcHHHHhcCcEEEEEEec
Confidence                 255567777777643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.66  E-value=6.1e-06  Score=78.18  Aligned_cols=31  Identities=6%  Similarity=0.019  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW   33 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~   33 (259)
                      +.|+++|+||||||||||         +++|+|.++|.++
T Consensus        28 ~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           28 DELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE   67 (483)
T ss_dssp             CSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred             ccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence            339999999999999999         5899999999753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.59  E-value=1.4e-06  Score=74.77  Aligned_cols=29  Identities=7%  Similarity=-0.018  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCcccc---------CCceEEEEcCeec
Q 024989            5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW   33 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~   33 (259)
                      ++++|+||||||||||         +++|.|.++|.++
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            5678999999999999         5899999988654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.48  E-value=0.00058  Score=59.41  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHh---cCcEEEEEeCChh
Q 024989           86 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDV----------LARADLLRFLRKECEE---RGATIIYATHIFD  146 (259)
Q Consensus        86 SgG~~qrv~ia~al~~~p~lllLDEPt~gLD~----------~~~~~~~~~l~~~~~~---~g~tiii~sH~~~  146 (259)
                      +++++.+..+..+...+|.+|++||+.+-++.          .....++..+......   .+..||.+|++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            35777788888888899999999999776543          2223344444432111   2456777888754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.47  E-value=0.00013  Score=64.71  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhcCc--EEEEEeCChhHHhccCCeEE
Q 024989           85 VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLA-RADLLRFLRKECEERGA--TIIYATHIFDGLENWPSHIV  156 (259)
Q Consensus        85 LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~~~-~~~~~~~l~~~~~~~g~--tiii~sH~~~~~~~~~drv~  156 (259)
                      +|.|++   .+++.+.  ..|.++++    |.+|... +..+.+.+.++.+..|.  .+.+|+|+-+.+..++|.+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence            898886   4566665  78999998    8999876 66778888887654453  67778888777777777654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.46  E-value=3.4e-05  Score=65.18  Aligned_cols=19  Identities=11%  Similarity=0.053  Sum_probs=13.9

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++++|+||||||||||.
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~   44 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVA   44 (231)
T ss_dssp             CCCEEEEECSCC----CHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            6899999999999999995

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.45  E-value=2.2e-05  Score=64.96  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCCccccC-----CceEEEEcCeec
Q 024989            3 EPEMVKVLGRSAFHDTALT-----SSGDLSYLGGEW   33 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----~~G~I~~~G~~~   33 (259)
                      +|++++|+||||||||||.     .-|.+.++|.++
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~   63 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF   63 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence            5899999999999999994     237777776654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.45  E-value=2.9e-05  Score=63.28  Aligned_cols=20  Identities=10%  Similarity=0.139  Sum_probs=18.4

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|++++|+||||||||||.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~   22 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIK   22 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH
Confidence            47999999999999999994

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.26  E-value=0.0015  Score=59.53  Aligned_cols=136  Identities=15%  Similarity=0.198  Sum_probs=72.4

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCccc-c
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW-R   81 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~   81 (259)
                      +|.++.|.|+.|+|||||.-.  +..........+.|+..+....      ..              ..+.++++.++ .
T Consensus        73 ~G~li~I~G~pGsGKTtlal~--la~~~~~~g~~vlyi~~E~s~~------~~--------------~a~~~g~d~~~l~  130 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALA--IVAQAQKAGGTCAFIDAEHALD------PV--------------YARALGVNTDELL  130 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHH--HHHHHHHTTCCEEEEESSCCCC------HH--------------HHHHTTCCGGGCE
T ss_pred             CCcEEEEEcCCCCChHHHHHH--HHHHHHHCCCeEEEEECCCChh------HH--------------HHHHcCCCHHHce
Confidence            689999999999999999410  0000000012355553332110      00              12233333211 1


Q ss_pred             C-CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---HHhcCcEEEEEe
Q 024989           82 M-HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLD---V----------LARADLLRFLRKE---CEERGATIIYAT  142 (259)
Q Consensus        82 ~-~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD---~----------~~~~~~~~~l~~~---~~~~g~tiii~s  142 (259)
                      + ...+ + .+-+.+++.++  .+++++|+|..++=.-   .          ...+.+.+.++++   +++.+++||+++
T Consensus       131 i~~~~~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n  208 (366)
T 1xp8_A          131 VSQPDN-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN  208 (366)
T ss_dssp             EECCSS-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             eecCCc-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence            1 1112 2 24455666665  5699999999886441   0          1113344444444   567899999999


Q ss_pred             CChhH----------------HhccCCeEEEEeCCe
Q 024989          143 HIFDG----------------LENWPSHIVYVAHGK  162 (259)
Q Consensus       143 H~~~~----------------~~~~~drv~~l~~G~  162 (259)
                      |-...                +...||.++.|+.+.
T Consensus       209 q~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~  244 (366)
T 1xp8_A          209 QVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG  244 (366)
T ss_dssp             EC---------------CHHHHHHHCSEEEEEEEES
T ss_pred             ecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence            86532                355688888877544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.24  E-value=6.8e-05  Score=63.56  Aligned_cols=30  Identities=20%  Similarity=0.201  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCCccccC-----CceEEEEcCee
Q 024989            3 EPEMVKVLGRSAFHDTALT-----SSGDLSYLGGE   32 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-----~~G~I~~~G~~   32 (259)
                      +|++++|+|+||||||||.     ..|+|.+.+.+
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~   53 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEP   53 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCeEEEecC
Confidence            6899999999999999994     25667776654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.23  E-value=0.0013  Score=61.17  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHH-HHcCCCc
Q 024989            2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI-KVLDIDL   78 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l-~~~~l~~   78 (259)
                      -+|+++.|.|++|+|||||...  ..+...   ....+.|+..+      ++..++           ..+++ ...+++.
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE------~~~~~l-----------~~R~~~~~~~i~~  257 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLE------MPAAQL-----------TLRMMCSEARIDM  257 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESS------SCHHHH-----------HHHHHHHHTTCCT
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECC------CCHHHH-----------HHHHHHHHcCCCH
Confidence            4799999999999999999410  000000   00124444222      222221           12222 2334443


Q ss_pred             cc-cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           79 SW-RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        79 ~~-~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+ +-+.||..+.+|+.-|...+.+.++++.|+|..  ++.   .+...++++.++.|..+|++-+-
T Consensus       258 ~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~~---~l~~~~~~l~~~~~~~lIvID~l  319 (444)
T 2q6t_A          258 NRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TLM---EVRARARRLVSQNQVGLIIIDYL  319 (444)
T ss_dssp             TTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BHH---HHHHHHHHHHHHSCCCEEEEECG
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CHH---HHHHHHHHHHHHcCCCEEEEcCh
Confidence            22 235799999999998888888888999998744  332   45556666665568888888763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.22  E-value=6.2e-05  Score=60.22  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=17.8

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-.|++++|+|+||||||||.
T Consensus         1 m~~~~~i~l~G~~GsGKSTl~   21 (173)
T 1kag_A            1 MAEKRNIFLVGPMGAGKSTIG   21 (173)
T ss_dssp             --CCCCEEEECCTTSCHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            667899999999999999985

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.20  E-value=8.1e-05  Score=61.12  Aligned_cols=18  Identities=11%  Similarity=0.180  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      +|++++|+||||||||||
T Consensus         5 ~g~~i~l~G~~GsGKSTl   22 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTV   22 (207)
T ss_dssp             CCCEEEEECSTTSCHHHH
T ss_pred             CCCEEEEECCCCCCHHHH
Confidence            689999999999999999

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.16  E-value=0.0001  Score=61.41  Aligned_cols=20  Identities=10%  Similarity=0.114  Sum_probs=18.2

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      -+|++++|+||||||||||.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~   25 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVR   25 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHH
T ss_pred             CCCcEEEEECcCCCCHHHHH
Confidence            37999999999999999994

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.16  E-value=4.4e-05  Score=75.01  Aligned_cols=44  Identities=7%  Similarity=-0.019  Sum_probs=32.8

Q ss_pred             HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      -..++.++++| |+.|+++.... +++.+.    +.|..+|++.|.++..
T Consensus        96 ~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~----~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           96 EAADAALVAVS-AEAGVQVGTER-AWTVAE----RLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHCSEEEEEEE-TTTCSCHHHHH-HHHHHH----HTTCCEEEEEECGGGC
T ss_pred             hhcCcEEEEEc-CCcccchhHHH-HHHHHH----HccCCEEEEecCCchh
Confidence            35678899999 99999987763 333332    3578899999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.13  E-value=9.8e-05  Score=60.99  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=25.4

Q ss_pred             CCcEEEEEcCCCCCccccC--------CceEE--EEcCeecc
Q 024989            3 EPEMVKVLGRSAFHDTALT--------SSGDL--SYLGGEWR   34 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~--------~~G~I--~~~G~~~~   34 (259)
                      +|++++|+||||||||||.        ..|.+  .++|.+++
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR   65 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence            6899999999999999994        34766  67765543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.08  E-value=9.9e-05  Score=61.14  Aligned_cols=30  Identities=13%  Similarity=0.048  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCee
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGE   32 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~   32 (259)
                      +|++++|+|+||||||||.         ..|.|.+.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            5799999999999999994         46777766544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.08  E-value=0.00076  Score=59.37  Aligned_cols=54  Identities=19%  Similarity=0.070  Sum_probs=32.6

Q ss_pred             HHHHHccCCcEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           95 ICMGLLKPFKVLLLDEITV-------------DLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        95 ia~al~~~p~lllLDEPt~-------------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      +..|....|.++++||--+             +........++..+..+....+..||.+|+..+.+
T Consensus       101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l  167 (301)
T 3cf0_A          101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII  167 (301)
T ss_dssp             HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred             HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence            4444456799999999632             22233344555555433233467888899987654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.98  E-value=0.00016  Score=57.96  Aligned_cols=30  Identities=17%  Similarity=0.107  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCCccccCC-----ceEEEEcCee
Q 024989            3 EPEMVKVLGRSAFHDTALTS-----SGDLSYLGGE   32 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~-----~G~I~~~G~~   32 (259)
                      +|++++|+|+|||||||+..     -|.+.+++.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~   41 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF   41 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcc
Confidence            58999999999999999952     3666666544

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.86  E-value=0.00058  Score=57.78  Aligned_cols=64  Identities=14%  Similarity=0.064  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHHccCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCChhHHhccC
Q 024989           86 SDGQRRRVQICMGLLKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYA-THIFDGLENWP  152 (259)
Q Consensus        86 SgG~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~-sH~~~~~~~~~  152 (259)
                      +.|.-.+..  ...+.+.+++|+||.-. ++|.......++.+..... .-.++++| |...+.+.++.
T Consensus       162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~  227 (235)
T 3llm_A          162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYF  227 (235)
T ss_dssp             EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHT
T ss_pred             CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHc
Confidence            456655543  34688999999999976 6887666444444443322 12355555 55544444433

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.85  E-value=0.00023  Score=58.87  Aligned_cols=21  Identities=24%  Similarity=0.189  Sum_probs=19.4

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|.+++|+||||||||||.
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~   29 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLI   29 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHH
Confidence            678999999999999999984

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.85  E-value=1.5e-05  Score=75.86  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=56.4

Q ss_pred             EEEEcCCCCCccccC-------CceEEEEcCeeccc--------cEEEecccCC-CCccCcH-HHH-Hhcc-CC----CC
Q 024989            7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWRR--------EVAFAGFEVP-IQMDVSA-EKM-IFGV-AG----ID   63 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~~--------~i~~v~~~~~-~~~~lt~-~~~-~~~~-~~----~~   63 (259)
                      +.|+||+|+|||||.       ..+.+.++|.++..        .+..+++... ..+.+.+ +++ .++. ..    ..
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~  146 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG  146 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCC
Confidence            899999999999993       57888888865421        2233333322 1222221 121 1111 00    01


Q ss_pred             HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 024989           64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV  113 (259)
Q Consensus        64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~  113 (259)
                      .+...+.+..       ....||||++|+..|+.|..++|++  |||+..
T Consensus       147 ~~e~~~~l~~-------LL~~Ldg~~~~~~viviAatn~p~~--LD~aLl  187 (499)
T 2dhr_A          147 NDEREQTLNQ-------LLVEMDGFEKDTAIVVMAATNRPDI--LDPALL  187 (499)
T ss_dssp             SHHHHHHHHH-------HHHHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred             cHHHHHHHHH-------HHHHhcccccCccEEEEEecCChhh--cCcccc
Confidence            1111222211       1235788898999999999999987  898865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.84  E-value=0.0072  Score=54.27  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=65.3

Q ss_pred             CCCcEEEEEcCCCCCccccCC----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC
Q 024989            2 VEPEMVKVLGRSAFHDTALTS----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID   77 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~   77 (259)
                      .+| ++-|.||+|||||||.-    ...  -.|  ....+.|+..+..+                ++.    .++.++++
T Consensus        27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~--~~g--~g~~vlyId~E~s~----------------~~~----ra~~lGvd   81 (333)
T 3io5_A           27 QSG-LLILAGPSKSFKSNFGLTMVSSYM--RQY--PDAVCLFYDSEFGI----------------TPA----YLRSMGVD   81 (333)
T ss_dssp             CSE-EEEEEESSSSSHHHHHHHHHHHHH--HHC--TTCEEEEEESSCCC----------------CHH----HHHHTTCC
T ss_pred             cCC-eEEEECCCCCCHHHHHHHHHHHHH--hcC--CCceEEEEeccchh----------------hHH----HHHHhCCC
Confidence            456 89999999999999941    000  000  01124444322111                111    24455654


Q ss_pred             ccc-cCCcCCHHHHHHHHHHHHH--c--cCCcEEEEeCCCCCCC-------H--------HHHHHHHHHHH---HHHHhc
Q 024989           78 LSW-RMHKVSDGQRRRVQICMGL--L--KPFKVLLLDEITVDLD-------V--------LARADLLRFLR---KECEER  134 (259)
Q Consensus        78 ~~~-~~~~LSgG~~qrv~ia~al--~--~~p~lllLDEPt~gLD-------~--------~~~~~~~~~l~---~~~~~~  134 (259)
                      .+. .+..-.-++++.+.++.++  +  .+|+++++|--++=.-       +        ...+.+-+.|+   .++++.
T Consensus        82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~  161 (333)
T 3io5_A           82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK  161 (333)
T ss_dssp             GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            322 1112223566667777776  3  4699999997765431       0        12233434443   356778


Q ss_pred             CcEEEEEeCChh
Q 024989          135 GATIIYATHIFD  146 (259)
Q Consensus       135 g~tiii~sH~~~  146 (259)
                      |+++|++-|-..
T Consensus       162 ~i~vi~tNQV~k  173 (333)
T 3io5_A          162 NIPCIAINHTYE  173 (333)
T ss_dssp             TCEEEEEEEC--
T ss_pred             CCEEEEECCeee
Confidence            999999999866

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.84  E-value=0.00026  Score=59.18  Aligned_cols=20  Identities=10%  Similarity=0.215  Sum_probs=18.3

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|++++|+||||||||||.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~   36 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIK   36 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEECcCCCCHHHHH
Confidence            47899999999999999994

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.81  E-value=0.0021  Score=53.23  Aligned_cols=43  Identities=12%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             cCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024989          101 KPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGAT-IIYATHI  144 (259)
Q Consensus       101 ~~p~lllLDEPt~gL-D~~~~~~~~~~l~~~~~~~g~t-iii~sH~  144 (259)
                      .+|.+|++||.-.-- +......++.++..... .+.. +|++|+.
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~  147 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASA  147 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESS
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCC
Confidence            578999999965432 23336778888887654 3554 7777774

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.79  E-value=0.00032  Score=60.28  Aligned_cols=19  Identities=21%  Similarity=0.169  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++++|+|||||||||+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~   44 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLC   44 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            6899999999999999984

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.74  E-value=0.0027  Score=57.24  Aligned_cols=59  Identities=10%  Similarity=0.088  Sum_probs=40.3

Q ss_pred             cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           84 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      +.++.++++..+++..+.+|+++||.-..+..|... ...+.+++.+......+|+++|.
T Consensus       154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            467788999999999999999888875444555443 34456666554332356666665

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.73  E-value=0.00056  Score=56.05  Aligned_cols=17  Identities=18%  Similarity=0.073  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      ..+.|.||+|+|||||.
T Consensus        55 ~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            68999999999999985

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.72  E-value=0.00053  Score=61.42  Aligned_cols=31  Identities=6%  Similarity=-0.006  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeec
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW   33 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~   33 (259)
                      +|++++|+|+||+||||+.         +.|+|.+.+.+.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5889999999999999993         567777766553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.72  E-value=0.00038  Score=58.02  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=17.5

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-++..++|+|||||||||+.
T Consensus         2 m~~~~~i~i~G~~GsGKSTl~   22 (227)
T 1cke_A            2 TAIAPVITIDGPSGAGKGTLC   22 (227)
T ss_dssp             -CCSCEEEEECCTTSSHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH
Confidence            345679999999999999984

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.65  E-value=0.00052  Score=60.72  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             cCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989          101 KPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus       101 ~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      .+|++|++||+-. .-+...+..++..+..... .|..+|++|+.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~  140 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR  140 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence            4699999999855 3344677888888887654 46667776653

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.64  E-value=0.007  Score=57.01  Aligned_cols=68  Identities=15%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             HHHHHHHHc--cCCcEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHhcCcEEEEEeCChh---------------
Q 024989           92 RVQICMGLL--KPFKVLLLDEITVDLD--------VLARADLLRFLRKECEERGATIIYATHIFD---------------  146 (259)
Q Consensus        92 rv~ia~al~--~~p~lllLDEPt~gLD--------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~---------------  146 (259)
                      -+..++.+.  ++|+++++|=- ..+.        ......+...|+.++++.|++||+++|--.               
T Consensus       342 i~~~i~~~~~~~~~~lvVID~l-~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l  420 (503)
T 1q57_A          342 LLAKLAYMRSGLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI  420 (503)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECT-TCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred             HHHHHHHHHHhcCCCEEEEccc-hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence            334444443  57999999943 3331        133445777888888888999999999542               


Q ss_pred             -------HHhccCCeEEEEeC
Q 024989          147 -------GLENWPSHIVYVAH  160 (259)
Q Consensus       147 -------~~~~~~drv~~l~~  160 (259)
                             .+++.||-|+.|..
T Consensus       421 ~dlr~s~~ie~~aD~vi~l~r  441 (503)
T 1q57_A          421 TDLRGSGALRQLSDTIIALER  441 (503)
T ss_dssp             SSCSSSSHHHHHCSEEEEEEE
T ss_pred             hhhccchHhhecCcEEEEEEe
Confidence                   24566888888853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.00049  Score=56.66  Aligned_cols=20  Identities=15%  Similarity=-0.017  Sum_probs=17.7

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      -+|+.++|+|++||||||+.
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~   42 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLG   42 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHH
Confidence            46889999999999999985

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.0015  Score=54.83  Aligned_cols=62  Identities=21%  Similarity=0.053  Sum_probs=44.0

Q ss_pred             HHccCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHhccCCeEEEEe
Q 024989           98 GLLKPFKVLLLDEITV----DLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA  159 (259)
Q Consensus        98 al~~~p~lllLDEPt~----gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~----------~~~~~~drv~~l~  159 (259)
                      .-..+|+++++|--+.    .-|......+...|..++++.|+++++++|...          .++.+||-|+.|.
T Consensus       131 ~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            3456899999995432    124555667778888888888999999998642          2456788888775

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.62  E-value=0.00047  Score=55.58  Aligned_cols=18  Identities=6%  Similarity=0.211  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+++|+||||||||||.
T Consensus        26 ~g~~~i~G~NGsGKStll   43 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIG   43 (182)
T ss_dssp             SSEEEEEECTTSSHHHHH
T ss_pred             CCcEEEECCCCCCHHHHH
Confidence            459999999999999993

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.62  E-value=0.0016  Score=60.91  Aligned_cols=117  Identities=13%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH-HcCCCc
Q 024989            2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK-VLDIDL   78 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~-~~~l~~   78 (259)
                      .+|+++.|.|++|+|||||...  -.+...|    ..+.|+..+      ++..++           ..+++. ..+++.
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g----~~vl~fSlE------ms~~ql-----------~~R~~~~~~~i~~  253 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSLE------MGKKEN-----------IKRLIVTAGSINA  253 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT----CEEEEECSS------SCTTHH-----------HHHHHHHHSCCCH
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC----CEEEEEECC------CCHHHH-----------HHHHHHHHcCCCH
Confidence            4799999999999999999410  0000001    235554332      222221           112221 123321


Q ss_pred             cc-cCCc--CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE--EEEEeCC
Q 024989           79 SW-RMHK--VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT--IIYATHI  144 (259)
Q Consensus        79 ~~-~~~~--LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t--iii~sH~  144 (259)
                      .+ +-+.  |+..+.+|+.-|...+.+.+++|.|+|.  +++.   .+...++++.++.|..  +|++-+-
T Consensus       254 ~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~L  319 (444)
T 3bgw_A          254 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDYL  319 (444)
T ss_dssp             HHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEECS
T ss_pred             HHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEecH
Confidence            11 1123  8888889998888888888899999874  5553   3555566665556777  8888764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.54  E-value=0.00047  Score=55.60  Aligned_cols=21  Identities=19%  Similarity=0.101  Sum_probs=17.8

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|.+++|+|++||||||+.
T Consensus         1 m~~g~~I~l~G~~GsGKST~~   21 (186)
T 3cm0_A            1 MDVGQAVIFLGPPGAGKGTQA   21 (186)
T ss_dssp             --CEEEEEEECCTTSCHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH
Confidence            678999999999999999974

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.48  E-value=0.0045  Score=53.28  Aligned_cols=54  Identities=24%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             HHHHHccCCcEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHH
Q 024989           95 ICMGLLKPFKVLLLDEITVD----------LDVLARADLLRFLRKEC---EERGATIIYATHIFDGL  148 (259)
Q Consensus        95 ia~al~~~p~lllLDEPt~g----------LD~~~~~~~~~~l~~~~---~~~g~tiii~sH~~~~~  148 (259)
                      +..+....|.+|++||.-.-          -+......+..++..+.   ...+..||.+|+..+.+
T Consensus       103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l  169 (285)
T 3h4m_A          103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL  169 (285)
T ss_dssp             HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred             HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence            34444567899999997332          25566677777776642   22356788888876543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.45  E-value=0.003  Score=53.68  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHhccCCeEEEEe
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI----------FDGLENWPSHIVYVA  159 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~----------~~~~~~~~drv~~l~  159 (259)
                      +|+++++||--. |+..    +.+.+..++. .|.+||++-|+          ...+..+||+|.-|+
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999964 6653    4445555554 48999999993          355667999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.45  E-value=0.00073  Score=60.28  Aligned_cols=45  Identities=20%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             CCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHH---hcCcEEEEEeCChh
Q 024989          102 PFKVLLLDEITVDLDVL-ARADLLRFLRKECE---ERGATIIYATHIFD  146 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~-~~~~~~~~l~~~~~---~~g~tiii~sH~~~  146 (259)
                      .|.+|++||.-.-.+.. ....+..++.....   ..+..+|++|++.+
T Consensus       130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~  178 (387)
T 2v1u_A          130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG  178 (387)
T ss_dssp             SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred             CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence            47799999985432221 33445555543211   23678999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.43  E-value=0.021  Score=61.41  Aligned_cols=132  Identities=19%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             CCCcEEEEEcCCCCCccccCC----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC
Q 024989            2 VEPEMVKVLGRSAFHDTALTS----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID   77 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~   77 (259)
                      .+|.++.|.||+|+|||||.-    .+.  ..|    ..+.|+..+....      ..              ..+.++++
T Consensus       381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G----~~vlyis~E~s~~------~~--------------~a~~lGvd  434 (1706)
T 3cmw_A          381 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REG----KTCAFIDAEHALD------PI--------------YARKLGVD  434 (1706)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHH--HTT----CCEEEECTTSCCC------HH--------------HHHHTTCC
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhC----CCeEEEEccCchH------HH--------------HHHHcCCC
Confidence            378999999999999999941    100  011    2355554332211      00              12233433


Q ss_pred             ccc-cC-CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCH-------------HHHHHHHHHHHH---HHHhcCcE
Q 024989           78 LSW-RM-HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDV-------------LARADLLRFLRK---ECEERGAT  137 (259)
Q Consensus        78 ~~~-~~-~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~-------------~~~~~~~~~l~~---~~~~~g~t  137 (259)
                      .++ .+ ..-+..+  -+.+++.++  .+|+++++|..++-...             ...+.+.+.+++   ++++.|++
T Consensus       435 ~~~L~i~~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~  512 (1706)
T 3cmw_A          435 IDNLLCSQPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL  512 (1706)
T ss_dssp             GGGCEEECCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHeEEcCCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCE
Confidence            211 11 1113332  234455443  57999999998876641             112233444444   45678999


Q ss_pred             EEEEeCChh----------------HHhccCCeEEEEeCC
Q 024989          138 IIYATHIFD----------------GLENWPSHIVYVAHG  161 (259)
Q Consensus       138 iii~sH~~~----------------~~~~~~drv~~l~~G  161 (259)
                      ||+++|-..                .++.+||-++.+...
T Consensus       513 VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~  552 (1706)
T 3cmw_A          513 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI  552 (1706)
T ss_dssp             EEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred             EEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEec
Confidence            999998533                355678887776543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.43  E-value=0.00066  Score=56.01  Aligned_cols=19  Identities=16%  Similarity=0.225  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++++|+|++|||||||.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~   38 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLA   38 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            5789999999999999995

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.41  E-value=0.00078  Score=60.47  Aligned_cols=111  Identities=11%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             EEEEEcCCCCCccccCCceEEEEcCe-eccccEEEecccCCCCccCcHHHH--H--hccC-CCCHHHHHHHHHHcCCCc-
Q 024989            6 MVKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSAEKM--I--FGVA-GIDPQRRAELIKVLDIDL-   78 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~~G~I~~~G~-~~~~~i~~v~~~~~~~~~lt~~~~--~--~~~~-~~~~~~~~~~l~~~~l~~-   78 (259)
                      +++|+||||||||||...=. .+.+. .-...+++++++...+......+.  .  ++.. ..+.+...+.++.+.-.. 
T Consensus        94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~  172 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQR  172 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhcccc
Confidence            89999999999999941000 00000 001224445444322221111110  0  1111 123344444444442111 


Q ss_pred             cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989           79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  117 (259)
Q Consensus        79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~  117 (259)
                      .-..-.+|.+..+|+..+...+..|+++|++-|....|+
T Consensus       173 ~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~  211 (321)
T 3tqc_A          173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG  211 (321)
T ss_dssp             SEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             ccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence            111223444444554333445678999999999876654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.38  E-value=0.014  Score=48.98  Aligned_cols=44  Identities=18%  Similarity=-0.001  Sum_probs=30.1

Q ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeC
Q 024989          100 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATH  143 (259)
Q Consensus       100 ~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~-~g~tiii~sH  143 (259)
                      ..+|+++|+..+.+.++......+..++..+... ...+||+.+|
T Consensus       110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A          110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            3478999999998889887766665555433221 1247888888

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.35  E-value=0.00064  Score=65.38  Aligned_cols=31  Identities=19%  Similarity=0.090  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCCccccC---------Cce-EEE-EcCeec
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSG-DLS-YLGGEW   33 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G-~I~-~~G~~~   33 (259)
                      +|++++|+|+||||||||.         ++| ++. ++|.++
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            6899999999999999993         454 664 666544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.34  E-value=0.0081  Score=56.75  Aligned_cols=72  Identities=15%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             cCCcCCHHHHHHHHHHHHHc--c---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989           81 RMHKVSDGQRRRVQICMGLL--K---------------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~--~---------------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      ..+.+||||+|-.-+|.+.+  .               .-.+++|||. +-+|....+..++++++    .|.=+|+++=
T Consensus       376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~----lglQliiatP  450 (483)
T 3euj_A          376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER----LDMQLLIAAP  450 (483)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH----cCCEEEEECc
Confidence            35789999999654443332  1               2358999999 99999999999888874    4788999997


Q ss_pred             ChhHHhccCCeEEEEe
Q 024989          144 IFDGLENWPSHIVYVA  159 (259)
Q Consensus       144 ~~~~~~~~~drv~~l~  159 (259)
                      +  .+..++|.++.+-
T Consensus       451 ~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          451 E--NISPERGTTYKLV  464 (483)
T ss_dssp             S--SCCCSSSEEEECC
T ss_pred             c--hhhhccCceEEEE
Confidence            7  6777788887664

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.31  E-value=0.00094  Score=53.77  Aligned_cols=19  Identities=21%  Similarity=0.106  Sum_probs=17.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++++|+|++||||||+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~   22 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVS   22 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            6899999999999999984

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.29  E-value=0.013  Score=63.79  Aligned_cols=134  Identities=18%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcc
Q 024989            2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS   79 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~   79 (259)
                      .+|.++.|.||+|+|||||.-.  -.+...|    ..+.|+..+....      ..              ..+.++++.+
T Consensus       381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~~G----~~vlyis~E~s~~------~~--------------~a~~lGvd~~  436 (2050)
T 3cmu_A          381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALD------PI--------------YARKLGVDID  436 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTT----CCEEEECTTSCCC------HH--------------HHHHTTCCTT
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEEcCCCHH------HH--------------HHHHcCCCHH
Confidence            3789999999999999999410  0000001    1344543221110      00              1223343321


Q ss_pred             c-cC-CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCcEEE
Q 024989           80 W-RM-HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLD-V------------LARADLLRFLRKE---CEERGATII  139 (259)
Q Consensus        80 ~-~~-~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD-~------------~~~~~~~~~l~~~---~~~~g~tii  139 (259)
                      + .+ ...+.  .|-+.+++.++  .+|+++++|.-++-.. .            ...+.+.+.++.+   +++.|++||
T Consensus       437 ~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VI  514 (2050)
T 3cmu_A          437 NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI  514 (2050)
T ss_dssp             TCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             HeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            1 11 12233  33456666554  5799999998876552 1            1223344455554   677899999


Q ss_pred             EEeCChhH----------------HhccCCeEEEEeCC
Q 024989          140 YATHIFDG----------------LENWPSHIVYVAHG  161 (259)
Q Consensus       140 i~sH~~~~----------------~~~~~drv~~l~~G  161 (259)
                      +++|-...                ++.++|.++.|+..
T Consensus       515 linQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~  552 (2050)
T 3cmu_A          515 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI  552 (2050)
T ss_dssp             EEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred             EEeecccccccccCCCcCCCCcchhhhhCCEEEEEEec
Confidence            99986432                56678888887654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.29  E-value=0.021  Score=61.41  Aligned_cols=71  Identities=18%  Similarity=0.284  Sum_probs=44.6

Q ss_pred             HHHHHHHHHc--cCCcEEEEeCCCCCCC-H------------HHHHHHHHHHHH---HHHhcCcEEEEEeCChh------
Q 024989           91 RRVQICMGLL--KPFKVLLLDEITVDLD-V------------LARADLLRFLRK---ECEERGATIIYATHIFD------  146 (259)
Q Consensus        91 qrv~ia~al~--~~p~lllLDEPt~gLD-~------------~~~~~~~~~l~~---~~~~~g~tiii~sH~~~------  146 (259)
                      +-...++.++  .+|+++++|+..+-.. .            ...+.+.+.+++   ++++.|++||+++|-..      
T Consensus       797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~  876 (1706)
T 3cmw_A          797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF  876 (1706)
T ss_dssp             HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred             HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence            3444444443  6899999999887552 1            122334444444   56778999999999432      


Q ss_pred             ----------HHhccCCeEEEEeCC
Q 024989          147 ----------GLENWPSHIVYVAHG  161 (259)
Q Consensus       147 ----------~~~~~~drv~~l~~G  161 (259)
                                .+++.||-++.++++
T Consensus       877 Gdp~~p~gs~~Leq~ADvvl~L~R~  901 (1706)
T 3cmw_A          877 GNPETTTGGNALKFYASVRLDIRRI  901 (1706)
T ss_dssp             SCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred             CCccccCCcchhhheeeEEEEEEec
Confidence                      355667778888543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.19  E-value=0.0021  Score=55.54  Aligned_cols=51  Identities=18%  Similarity=0.057  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989          111 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  161 (259)
Q Consensus       111 Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G  161 (259)
                      ||++.+..+...+++.+.+...+.+.+..+.+|..+++++.++++...-.+
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~  194 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRG  194 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998887655666678899999999988887644333

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.17  E-value=0.0013  Score=52.16  Aligned_cols=20  Identities=10%  Similarity=0.262  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCCccccCC
Q 024989            3 EPEMVKVLGRSAFHDTALTS   22 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~   22 (259)
                      .+.+.+|+|||||||||+.+
T Consensus        22 ~~g~~~I~G~NGsGKStil~   41 (149)
T 1f2t_A           22 KEGINLIIGQNGSGKSSLLD   41 (149)
T ss_dssp             CSEEEEEECCTTSSHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHH
Confidence            35689999999999999954

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.99  E-value=0.0016  Score=60.16  Aligned_cols=18  Identities=11%  Similarity=0.370  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      .|++++|+||||||||||
T Consensus        25 ~~~~~~i~G~nG~GKstl   42 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNM   42 (430)
T ss_dssp             TCSEEEEECSTTSSHHHH
T ss_pred             CCCEEEEECCCCCCHHHH
Confidence            479999999999999998

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.91  E-value=0.0022  Score=52.30  Aligned_cols=21  Identities=14%  Similarity=0.088  Sum_probs=19.2

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|-+++|+|++||||||+.
T Consensus         1 m~~~~~I~l~G~~GsGKsT~~   21 (204)
T 2v54_A            1 MSRGALIVFEGLDKSGKTTQC   21 (204)
T ss_dssp             CCCCCEEEEECCTTSSHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHH
Confidence            668899999999999999984

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.87  E-value=0.0021  Score=51.90  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=18.6

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|.++.|+|++||||||+.
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~   22 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLS   22 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH
Confidence            457889999999999999974

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.86  E-value=0.0022  Score=51.23  Aligned_cols=19  Identities=16%  Similarity=0.265  Sum_probs=17.0

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .|.++.|+|++||||||+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a   20 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIV   20 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            4678999999999999984

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.83  E-value=0.0018  Score=53.15  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+++|+|++||||||+.
T Consensus        18 ~~~I~l~G~~GsGKSTla   35 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVG   35 (202)
T ss_dssp             SSCEEEECSTTSCHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            457999999999999985

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.79  E-value=0.0024  Score=52.19  Aligned_cols=21  Identities=10%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |.+|-+++|+|++||||||+.
T Consensus         1 mm~~~~I~i~G~~GsGKsT~~   21 (213)
T 2plr_A            1 MKKGVLIAFEGIDGSGKSSQA   21 (213)
T ss_dssp             -CCCEEEEEECCTTSSHHHHH
T ss_pred             CCCCeEEEEEcCCCCCHHHHH
Confidence            557889999999999999984

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.77  E-value=0.025  Score=46.69  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=38.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh----------hHHhccCCeEEEEe
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA  159 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~----------~~~~~~~drv~~l~  159 (259)
                      +.+++++||--. +|+..    .+.++++.. .|+.||++.++.          ..+..+||.|.-|+
T Consensus        81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDEI----VEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTHH----HHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHHH----HHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999544 77543    445666554 489999999865          56777899998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.77  E-value=0.0019  Score=55.73  Aligned_cols=19  Identities=11%  Similarity=0.099  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|+.++|+|++||||||+.
T Consensus        47 ~g~~i~l~G~~GsGKSTl~   65 (250)
T 3nwj_A           47 NGRSMYLVGMMGSGKTTVG   65 (250)
T ss_dssp             TTCCEEEECSTTSCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            4899999999999999984

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.76  E-value=0.002  Score=52.72  Aligned_cols=16  Identities=6%  Similarity=0.194  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+|||||||+.
T Consensus         3 ~i~i~G~~GsGKSTl~   18 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVA   18 (204)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCcCHHHHH
Confidence            6899999999999985

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.71  E-value=0.0024  Score=50.13  Aligned_cols=17  Identities=6%  Similarity=0.212  Sum_probs=15.2

Q ss_pred             EEEEEcCCCCCccccCC
Q 024989            6 MVKVLGRSAFHDTALTS   22 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~   22 (259)
                      +++|+|++||||||+..
T Consensus         3 ~I~l~G~~GsGKsT~a~   19 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAK   19 (179)
T ss_dssp             EEEEECCTTSCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            68999999999999853

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.71  E-value=0.0028  Score=54.23  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCCccccC-------CceEEEEcCeecc
Q 024989            3 EPEMVKVLGRSAFHDTALT-------SSGDLSYLGGEWR   34 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~   34 (259)
                      +|..+.|+|++||||||+.       ..|.+.++|..++
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r   69 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR   69 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence            4788999999999999994       2345666665543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.71  E-value=0.0023  Score=50.53  Aligned_cols=16  Identities=6%  Similarity=0.285  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus         3 ~i~l~G~~GsGKsT~~   18 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVA   18 (173)
T ss_dssp             EEEEECSSSSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            7899999999999985

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.69  E-value=0.0029  Score=53.59  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=18.6

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |.+|.+++|.|++||||||+.
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~   43 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVI   43 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHH
Confidence            347899999999999999984

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.68  E-value=0.0028  Score=57.00  Aligned_cols=19  Identities=32%  Similarity=0.349  Sum_probs=16.8

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|..+.|.||.|+|||||.
T Consensus       122 ~gsviLI~GpPGsGKTtLA  140 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLV  140 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHH
Confidence            5677899999999999995

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.66  E-value=0.0029  Score=52.48  Aligned_cols=21  Identities=14%  Similarity=0.129  Sum_probs=18.0

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-++-+++|+|++||||||+.
T Consensus         1 M~~~~~I~i~G~~GSGKST~~   21 (218)
T 1vht_A            1 MSLRYIVALTGGIGSGKSTVA   21 (218)
T ss_dssp             -CCCEEEEEECCTTSCHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHH
Confidence            556789999999999999984

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.62  E-value=0.0029  Score=51.14  Aligned_cols=19  Identities=16%  Similarity=0.125  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|.++.|+|++||||||+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~   30 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIA   30 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHH
Confidence            6889999999999999984

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.61  E-value=0.12  Score=48.07  Aligned_cols=19  Identities=16%  Similarity=0.305  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++++|++|+||||+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~  117 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTV  117 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHH
Confidence            3679999999999999984

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.55  E-value=0.0031  Score=56.53  Aligned_cols=19  Identities=11%  Similarity=0.267  Sum_probs=16.8

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+.+.+|+||||||||||.
T Consensus        22 ~~~~~~i~G~NGsGKS~ll   40 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLL   40 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            3568999999999999994

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.53  E-value=0.0033  Score=51.53  Aligned_cols=21  Identities=5%  Similarity=0.012  Sum_probs=18.4

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|-+++|+|++||||||+.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~   27 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQS   27 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHH
Confidence            446889999999999999984

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.51  E-value=0.0031  Score=50.65  Aligned_cols=20  Identities=15%  Similarity=0.132  Sum_probs=17.4

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      -++..+.|+|++||||||+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~   28 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLG   28 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHH
Confidence            35678999999999999975

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.50  E-value=0.0033  Score=50.52  Aligned_cols=18  Identities=11%  Similarity=0.106  Sum_probs=16.4

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|+|++||||||+.
T Consensus         5 ~~~i~l~G~~GsGKst~a   22 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVG   22 (185)
T ss_dssp             CCEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            678999999999999974

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.48  E-value=0.0036  Score=50.25  Aligned_cols=19  Identities=21%  Similarity=0.249  Sum_probs=16.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|++||||||+.
T Consensus         2 ~~~~I~i~G~~GsGKsT~~   20 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSS   20 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            5778999999999999984

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.47  E-value=0.0034  Score=52.01  Aligned_cols=20  Identities=20%  Similarity=0.102  Sum_probs=17.9

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      -+|.+++|+|++||||||+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~   42 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLA   42 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH
Confidence            36889999999999999984

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.46  E-value=0.0036  Score=56.96  Aligned_cols=18  Identities=17%  Similarity=0.246  Sum_probs=15.9

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      .+.+++|+||||||||||
T Consensus        25 ~~g~~~i~G~nG~GKttl   42 (359)
T 2o5v_A           25 PEGVTGIYGENGAGKTNL   42 (359)
T ss_dssp             CSEEEEEECCTTSSHHHH
T ss_pred             cCCeEEEECCCCCChhHH
Confidence            344999999999999998

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.45  E-value=0.0037  Score=51.91  Aligned_cols=20  Identities=10%  Similarity=0.262  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCCccccCC
Q 024989            3 EPEMVKVLGRSAFHDTALTS   22 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~   22 (259)
                      .+.+.+|+|||||||||+.+
T Consensus        22 ~~~~~~I~G~NgsGKStil~   41 (203)
T 3qks_A           22 KEGINLIIGQNGSGKSSLLD   41 (203)
T ss_dssp             CSEEEEEECCTTSSHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHH
Confidence            35689999999999999854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.39  E-value=0.0037  Score=49.63  Aligned_cols=18  Identities=6%  Similarity=0.196  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.++.|+|++||||||+.
T Consensus         2 ~~~I~i~G~~GsGKST~a   19 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWA   19 (181)
T ss_dssp             CEEEEEECCTTSSHHHHH
T ss_pred             CeEEEEecCCCCCHHHHH
Confidence            467999999999999985

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.37  E-value=0.0038  Score=56.35  Aligned_cols=30  Identities=17%  Similarity=0.079  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCCCCccccC---------CceEEEEcCeec
Q 024989            4 PEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW   33 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~   33 (259)
                      +.+++|+|++|||||||.         ++|+|.+.+.+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp  112 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP  112 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence            789999999999999994         467888777543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.34  E-value=0.06  Score=45.23  Aligned_cols=54  Identities=15%  Similarity=0.061  Sum_probs=27.6

Q ss_pred             HHHHHccCCcEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHH---hcCcEEEEEeCChhHH
Q 024989           95 ICMGLLKPFKVLLLDEITVDL-----------DVLARADLLRFLRKECE---ERGATIIYATHIFDGL  148 (259)
Q Consensus        95 ia~al~~~p~lllLDEPt~gL-----------D~~~~~~~~~~l~~~~~---~~g~tiii~sH~~~~~  148 (259)
                      +..+....|.+|++||.-.-.           +......+..++..+..   ..+..+|.+|+..+.+
T Consensus        91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~l  158 (262)
T 2qz4_A           91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL  158 (262)
T ss_dssp             HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGG
T ss_pred             HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhc
Confidence            334445578999999985421           33334445555554321   1245677777766543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.34  E-value=0.0046  Score=50.11  Aligned_cols=20  Identities=10%  Similarity=0.117  Sum_probs=17.6

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|..++|+|++||||||+.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~   27 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMA   27 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH
Confidence            35789999999999999974

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.32  E-value=0.0043  Score=50.87  Aligned_cols=21  Identities=5%  Similarity=0.044  Sum_probs=18.0

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|-+++|+|++||||||+.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~   26 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQS   26 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH
Confidence            346889999999999999984

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.31  E-value=0.0035  Score=50.66  Aligned_cols=21  Identities=10%  Similarity=0.177  Sum_probs=18.1

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-++-+++|+|++||||||+.
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~   26 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQC   26 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHH
Confidence            346789999999999999974

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.30  E-value=0.0049  Score=54.05  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCCccccC-------CceEEEEcCe
Q 024989            3 EPEMVKVLGRSAFHDTALT-------SSGDLSYLGG   31 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~   31 (259)
                      .|..+.|+|||||||||+.       ..|.+.+.+.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D   67 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND   67 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence            4678999999999999994       2255666653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.23  E-value=0.0039  Score=51.46  Aligned_cols=15  Identities=20%  Similarity=0.279  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||||||||||.
T Consensus         4 IVi~GPSG~GK~Tl~   18 (186)
T 1ex7_A            4 IVISGPSGTGKSTLL   18 (186)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999985

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.22  E-value=0.0042  Score=53.33  Aligned_cols=17  Identities=12%  Similarity=0.171  Sum_probs=15.3

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+||+|||||||.
T Consensus         2 ~li~I~G~~GSGKSTla   18 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMA   18 (253)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             eEEEEECCCCcCHHHHH
Confidence            47899999999999994

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.20  E-value=0.0063  Score=53.75  Aligned_cols=19  Identities=16%  Similarity=0.242  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++++++|++|+||||+.
T Consensus        97 ~~~vi~i~G~~G~GKTT~~  115 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTA  115 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            4889999999999999984

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.17  E-value=0.0058  Score=48.83  Aligned_cols=19  Identities=11%  Similarity=0.109  Sum_probs=12.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|++||||||+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a   22 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTA   22 (183)
T ss_dssp             -CCEEEEECCC----CHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            5778999999999999974

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.15  E-value=0.061  Score=48.26  Aligned_cols=18  Identities=17%  Similarity=0.309  Sum_probs=15.9

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.-+.|.||+|+|||+|.
T Consensus       117 ~~~vLl~GppGtGKT~la  134 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIG  134 (357)
T ss_dssp             CSEEEEESSTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            457899999999999985

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.09  E-value=0.0052  Score=49.86  Aligned_cols=19  Identities=11%  Similarity=0.317  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.+++|+|++||||||+.
T Consensus         7 ~~~~I~i~G~~GsGKST~~   25 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVA   25 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            4568999999999999984

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.07  E-value=0.0053  Score=49.28  Aligned_cols=19  Identities=26%  Similarity=0.279  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|+|++||||||+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a   20 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQC   20 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            5789999999999999985

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.06  E-value=0.049  Score=59.40  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             HHHHHHHHc--cCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCcEEEEEeCCh--------
Q 024989           92 RVQICMGLL--KPFKVLLLDEITVDLDVL----------------ARADLLRFLRKECEERGATIIYATHIF--------  145 (259)
Q Consensus        92 rv~ia~al~--~~p~lllLDEPt~gLD~~----------------~~~~~~~~l~~~~~~~g~tiii~sH~~--------  145 (259)
                      -+.+...+.  .+++++++|--++-.-..                ....++..|..++++.|.|||++.|-.        
T Consensus       100 ll~il~~L~~~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~fg  179 (2050)
T 3cmu_A          100 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  179 (2050)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HHHHHHHHHhccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEEecccccccccC
Confidence            345555554  479999999876654321                123455556667777899999998862        


Q ss_pred             --------hHHhccCCeEEEEeC
Q 024989          146 --------DGLENWPSHIVYVAH  160 (259)
Q Consensus       146 --------~~~~~~~drv~~l~~  160 (259)
                              ..+..+||-++.|..
T Consensus       180 ~~~~~~gG~~l~~iaD~VI~L~r  202 (2050)
T 3cmu_A          180 NPETTTGGNALKFYASVRLDIRR  202 (2050)
T ss_dssp             CCEECSSHHHHHHHEEEEEEEEE
T ss_pred             cccccCCcchhhhhCcEEEEEEe
Confidence                    246678888888854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.00  E-value=0.0061  Score=51.37  Aligned_cols=19  Identities=5%  Similarity=0.144  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|..++|+|++||||||+.
T Consensus        15 ~~~~i~i~G~~gsGKst~~   33 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVA   33 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            5789999999999999974

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.98  E-value=0.0059  Score=49.74  Aligned_cols=17  Identities=18%  Similarity=0.137  Sum_probs=15.4

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+|+||||||||.
T Consensus         7 ~~i~i~G~sGsGKTTl~   23 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLL   23 (174)
T ss_dssp             CEEEEECCTTSCHHHHH
T ss_pred             eEEEEEeCCCCCHHHHH
Confidence            57999999999999994

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.95  E-value=0.0074  Score=56.12  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=73.5

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcH-HHH--H--hc-cCCCCHHHH
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKM--I--FG-VAGIDPQRR   67 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~-~~~--~--~~-~~~~~~~~~   67 (259)
                      +|++++++|++||||||+.         ..|+|.+.+.+..+.... .|       +.. .+.  +  +. ..+.++..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~-~q-------L~~~~~~~gv~v~~~~~~~~p~~i  168 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-EQ-------LRLLGEKVGVPVLEVMDGESPESI  168 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHH-HH-------HHHHHHHHTCCEEECCTTCCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhH-HH-------HHHhcccCCccEEecCCCCCHHHH
Confidence            5789999999999999993         567777766554221000 00       000 000  0  00 011233222


Q ss_pred             -HHHHHHc---CCC---ccccC--CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           68 -AELIKVL---DID---LSWRM--HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        68 -~~~l~~~---~l~---~~~~~--~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                       .+.++.+   +.+   .+.++  ..-+.-+.+...+++++..++-++++| ++++.|...      .++.+...-+.+-
T Consensus       169 ~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~------~a~~f~~~l~i~G  241 (425)
T 2ffh_A          169 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALS------VARAFDEKVGVTG  241 (425)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHH------HHHHHHHHTCCCE
T ss_pred             HHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHH------HHHHHHhcCCceE
Confidence             3344332   111   13221  112345677777888887677788888 566755432      2333333345566


Q ss_pred             EEEeCChh---------HHhccCCeEEEEeCCe
Q 024989          139 IYATHIFD---------GLENWPSHIVYVAHGK  162 (259)
Q Consensus       139 ii~sH~~~---------~~~~~~drv~~l~~G~  162 (259)
                      ++.|+.-.         ......-.|.++..|.
T Consensus       242 VIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge  274 (425)
T 2ffh_A          242 LVLTKLDGDARGGAALSARHVTGKPIYFAGVSE  274 (425)
T ss_dssp             EEEESGGGCSSCHHHHHHHHHHCCCEEEEECSS
T ss_pred             EEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCC
Confidence            66676311         1222334566666554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.93  E-value=0.006  Score=49.42  Aligned_cols=16  Identities=6%  Similarity=0.324  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus         2 ~I~i~G~~GsGKsT~~   17 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTIS   17 (205)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECCCccCHHHHH
Confidence            6899999999999984

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.90  E-value=0.0066  Score=51.92  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989          116 DVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus       116 D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +|..++.+.+..+++++ .+..+|+...|+.
T Consensus       110 ~~~vr~~l~~~qr~~a~-~~~~~V~~GRd~g  139 (233)
T 3r20_A          110 VPAVRTRLVDIQRKLAT-EGGRVVVEGRDIG  139 (233)
T ss_dssp             CHHHHHHHHHHHHHHHT-SSSCEEEEESSCC
T ss_pred             chHHHHHHHHHHHHHHH-hcCcEEEecccce
Confidence            67778888888888765 3135777777654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.87  E-value=0.0092  Score=52.42  Aligned_cols=19  Identities=16%  Similarity=0.296  Sum_probs=13.8

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++-+++|.|++||||||+.
T Consensus         4 ~~~iIgItG~sGSGKSTva   22 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVK   22 (290)
T ss_dssp             TSCEEEEESCC---CCTHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            4568999999999999995

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.73  E-value=0.0068  Score=48.55  Aligned_cols=16  Identities=13%  Similarity=0.129  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus         3 ~I~i~G~~GsGKsT~~   18 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVL   18 (194)
T ss_dssp             EEEEEECTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6899999999999984

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.71  E-value=0.0078  Score=51.68  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=17.5

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-++-++.|+|++||||||+.
T Consensus         1 M~~~~lIvl~G~pGSGKSTla   21 (260)
T 3a4m_A            1 MGDIMLIILTGLPGVGKSTFS   21 (260)
T ss_dssp             --CCEEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEEcCCCCCHHHHH
Confidence            557789999999999999984

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.63  E-value=0.0096  Score=50.61  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=15.5

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |.+|-+++|.|++||||||+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~   42 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHL   42 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHH
Confidence            568999999999999999984

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.58  E-value=0.0076  Score=48.09  Aligned_cols=16  Identities=13%  Similarity=0.160  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++||||||+.
T Consensus         6 ~i~i~G~~GsGKsTla   21 (175)
T 1via_A            6 NIVFIGFMGSGKSTLA   21 (175)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            5899999999999984

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.55  E-value=0.0096  Score=49.90  Aligned_cols=20  Identities=15%  Similarity=0.079  Sum_probs=17.7

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      +.|..+.|+||+|+|||||.
T Consensus        32 ~~g~~ilI~GpsGsGKStLA   51 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETA   51 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHH
T ss_pred             ECCEEEEEECCCCCCHHHHH
Confidence            46788999999999999994

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.55  E-value=0.008  Score=47.83  Aligned_cols=19  Identities=21%  Similarity=0.221  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|..++|+|++|+|||||.
T Consensus         3 ~~~ki~ivG~~g~GKStLl   21 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLL   21 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            5778999999999999995

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.49  E-value=0.0092  Score=57.01  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=18.1

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++|+.++|+||||+|||||.
T Consensus       106 ~~g~~vll~Gp~GtGKTtla  125 (543)
T 3m6a_A          106 LKGPILCLAGPPGVGKTSLA  125 (543)
T ss_dssp             CCSCEEEEESSSSSSHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH
Confidence            36899999999999999994

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.45  E-value=0.0092  Score=49.82  Aligned_cols=20  Identities=5%  Similarity=0.069  Sum_probs=16.5

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .++-+++|+|++||||||+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a   24 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVS   24 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHH
Confidence            45678999999999999974

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.41  E-value=0.0036  Score=51.40  Aligned_cols=16  Identities=13%  Similarity=0.264  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus         2 ~I~i~G~~GsGKsTl~   17 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLV   17 (214)
T ss_dssp             EEEEEEEEEEEHHHHH
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            6899999999999994

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.39  E-value=0.0096  Score=48.40  Aligned_cols=17  Identities=24%  Similarity=0.266  Sum_probs=15.3

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+|++|||||||.
T Consensus         5 ~~i~i~G~sGsGKTTl~   21 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLM   21 (169)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            47899999999999984

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.27  E-value=0.012  Score=47.89  Aligned_cols=16  Identities=25%  Similarity=0.349  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|.|++||||||+.
T Consensus         4 ~i~i~G~~GsGKst~~   19 (208)
T 3ake_A            4 IVTIDGPSASGKSSVA   19 (208)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            8999999999999984

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.24  E-value=0.011  Score=52.98  Aligned_cols=31  Identities=6%  Similarity=0.028  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCCccccC---------CceEEEEcCeec
Q 024989            3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW   33 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~   33 (259)
                      ++.+++|+|++|+|||||.         ..|+|.+.+.+.
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            5789999999999999993         456666655443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.19  E-value=0.011  Score=47.69  Aligned_cols=19  Identities=5%  Similarity=0.137  Sum_probs=16.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++-+++|+|++||||||+.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a   29 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQC   29 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            3568999999999999974

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.14  E-value=0.012  Score=47.89  Aligned_cols=18  Identities=17%  Similarity=0.148  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +-+++|+|++||||||+.
T Consensus        15 ~~~I~l~G~~GsGKsT~~   32 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQC   32 (203)
T ss_dssp             CEEEEEECSTTSSHHHHH
T ss_pred             CcEEEEECCCCCCHHHHH
Confidence            457999999999999974

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.06  E-value=0.012  Score=46.21  Aligned_cols=17  Identities=6%  Similarity=0.227  Sum_probs=15.1

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      -.++|+|++|+|||||.
T Consensus         4 ~~v~lvG~~gvGKStL~   20 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIF   20 (165)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            35899999999999995

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.04  E-value=0.012  Score=47.08  Aligned_cols=16  Identities=13%  Similarity=0.135  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus         2 ~I~l~G~~GsGKsT~~   17 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQA   17 (195)
T ss_dssp             EEEEECSTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999984

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.01  E-value=0.012  Score=47.19  Aligned_cols=16  Identities=19%  Similarity=0.312  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         4 kv~ivG~~gvGKStLl   19 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLL   19 (184)
T ss_dssp             EEEEESCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.01  E-value=0.019  Score=54.25  Aligned_cols=53  Identities=11%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             HHHHHccCCcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989           95 ICMGLLKPFKVLLLDEIT----------VDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus        95 ia~al~~~p~lllLDEPt----------~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +..|.-..|.+|+|||--          ..+.......++..+.......+..||.+|+..+.
T Consensus       290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~  352 (489)
T 3hu3_A          290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS  352 (489)
T ss_dssp             HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred             HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence            334455678999999961          22333444556666654433335566777887654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.85  E-value=0.014  Score=46.74  Aligned_cols=18  Identities=28%  Similarity=0.331  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+++|+|++||||||+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~   23 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQC   23 (194)
T ss_dssp             CEEEEEEESTTSSHHHHH
T ss_pred             CcEEEEECCCCCCHHHHH
Confidence            458999999999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.76  E-value=0.018  Score=48.91  Aligned_cols=19  Identities=11%  Similarity=-0.001  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-.++|+|++||||||+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a   46 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQS   46 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            5668999999999999984

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.76  E-value=0.015  Score=47.89  Aligned_cols=16  Identities=6%  Similarity=0.094  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++||||||+.
T Consensus         2 ~I~l~G~~GsGKsT~a   17 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQA   17 (216)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999975

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.72  E-value=0.017  Score=51.71  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.+++|+||+|||||||.
T Consensus         2 ~~~~i~i~GptgsGKt~la   20 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTS   20 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHH
Confidence            5678999999999999993

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.71  E-value=0.024  Score=52.43  Aligned_cols=16  Identities=25%  Similarity=0.438  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+||+|||||.
T Consensus       182 kvaivG~~gvGKSTLl  197 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLF  197 (439)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            6899999999999993

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.70  E-value=0.013  Score=48.64  Aligned_cols=19  Identities=21%  Similarity=0.205  Sum_probs=16.2

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++-++.|+|++||||||+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~   22 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQC   22 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            3557899999999999974

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.67  E-value=0.018  Score=46.92  Aligned_cols=19  Identities=16%  Similarity=0.080  Sum_probs=16.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .|-+++|+|+.||||||+.
T Consensus        19 ~~~~I~l~G~~GsGKST~a   37 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQA   37 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            4668999999999999974

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.63  E-value=0.017  Score=49.07  Aligned_cols=18  Identities=22%  Similarity=0.362  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +-+++|.|++||||||+.
T Consensus        22 ~~iI~I~G~~GSGKST~a   39 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVC   39 (252)
T ss_dssp             CEEEEEECSTTSSHHHHH
T ss_pred             cEEEEEECCCCCCHHHHH
Confidence            347999999999999984

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.63  E-value=0.013  Score=46.21  Aligned_cols=17  Identities=18%  Similarity=0.184  Sum_probs=15.1

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+|++||||||+.
T Consensus         3 ~~I~l~G~~GsGKsT~a   19 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVG   19 (173)
T ss_dssp             CCEEEESCTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            36899999999999984

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=93.56  E-value=0.017  Score=52.29  Aligned_cols=18  Identities=17%  Similarity=0.440  Sum_probs=16.3

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      .+.+.+|+|+|||||||+
T Consensus        24 ~~gl~vi~G~NGaGKT~i   41 (371)
T 3auy_A           24 EKGIVAIIGENGSGKSSI   41 (371)
T ss_dssp             CSEEEEEEECTTSSHHHH
T ss_pred             CCCeEEEECCCCCCHHHH
Confidence            457899999999999999

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.55  E-value=0.018  Score=51.92  Aligned_cols=19  Identities=11%  Similarity=0.364  Sum_probs=16.8

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.++.|+||+|||||||.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa   57 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLS   57 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            4568999999999999993

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.55  E-value=0.016  Score=46.14  Aligned_cols=17  Identities=6%  Similarity=0.227  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =.++|+|++|+|||||.
T Consensus         8 ~~i~lvG~~gvGKStL~   24 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIF   24 (188)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             CEEEEECCCCCCHHHHH
Confidence            35899999999999995

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.54  E-value=0.034  Score=50.09  Aligned_cols=29  Identities=17%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             cCCHHHHHHHHHHHHH---cc--CCcEEEEeCCC
Q 024989           84 KVSDGQRRRVQICMGL---LK--PFKVLLLDEIT  112 (259)
Q Consensus        84 ~LSgG~~qrv~ia~al---~~--~p~lllLDEPt  112 (259)
                      .+|+|++||..|+++|   ..  ++.++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            5899999999999999   66  89999999997

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.54  E-value=0.02  Score=48.23  Aligned_cols=21  Identities=14%  Similarity=0.118  Sum_probs=18.9

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+|-++.+.|++||||||+.
T Consensus         2 m~~g~~i~~eG~~g~GKst~~   22 (216)
T 3tmk_A            2 MGRGKLILIEGLDRTGKTTQC   22 (216)
T ss_dssp             CCCCCEEEEEECSSSSHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH
Confidence            557999999999999999984

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.51  E-value=0.018  Score=45.22  Aligned_cols=16  Identities=6%  Similarity=0.117  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++||||||+.
T Consensus         2 ~I~l~G~~GsGKsT~a   17 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVG   17 (168)
T ss_dssp             EEEEESCTTSCHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            5899999999999974

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.46  E-value=0.018  Score=47.45  Aligned_cols=16  Identities=6%  Similarity=0.032  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++||||||+.
T Consensus         2 ~I~l~G~~GsGKsT~a   17 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQG   17 (216)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.45  E-value=0.019  Score=45.32  Aligned_cols=17  Identities=12%  Similarity=0.219  Sum_probs=15.3

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      ++++|+|+.||||||+.
T Consensus         8 ~~i~l~G~~GsGKSTva   24 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLA   24 (168)
T ss_dssp             CEEEEESCTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            57899999999999974

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.45  E-value=0.021  Score=47.29  Aligned_cols=19  Identities=11%  Similarity=0.108  Sum_probs=16.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|+.||||||+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a   21 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQA   21 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            4668999999999999974

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.40  E-value=0.015  Score=46.61  Aligned_cols=17  Identities=6%  Similarity=0.110  Sum_probs=14.9

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      -.++|+|++||||||+.
T Consensus         3 ~~I~l~G~~GsGKsT~a   19 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIG   19 (184)
T ss_dssp             CSEEEECSTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            35899999999999974

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.28  E-value=0.02  Score=47.22  Aligned_cols=16  Identities=13%  Similarity=0.293  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus        14 iIgltG~~GSGKSTva   29 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVC   29 (192)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6899999999999974

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.25  E-value=0.022  Score=46.49  Aligned_cols=53  Identities=11%  Similarity=0.209  Sum_probs=34.9

Q ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHhccCCeEEEEe
Q 024989          101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA  159 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~----------~~~~~~drv~~l~  159 (259)
                      .+++++++||--. +++.    +.+.|..+..+ |..|+++.++.+          .+..+||.|.-|+
T Consensus        75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             TTEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            3678999999743 5543    44566666554 899999888554          2334577776553

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.16  E-value=0.022  Score=49.57  Aligned_cols=18  Identities=11%  Similarity=0.113  Sum_probs=15.9

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +-+++|+|++||||||+.
T Consensus        75 ~~iI~I~G~~GSGKSTva   92 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVA   92 (281)
T ss_dssp             CEEEEEEECTTSCHHHHH
T ss_pred             CEEEEEECCCCCCHHHHH
Confidence            457999999999999985

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.14  E-value=0.019  Score=47.06  Aligned_cols=20  Identities=15%  Similarity=0.297  Sum_probs=17.5

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      +.|.-+.|.|+||+|||||.
T Consensus        14 v~G~gvli~G~SGaGKStla   33 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELS   33 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHH
Confidence            45778999999999999984

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.12  E-value=0.023  Score=51.22  Aligned_cols=17  Identities=24%  Similarity=0.376  Sum_probs=15.4

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+||+|||||||.
T Consensus         8 ~lI~I~GptgSGKTtla   24 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELS   24 (340)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             ceEEEECCCcCcHHHHH
Confidence            47999999999999994

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.10  E-value=0.023  Score=49.29  Aligned_cols=18  Identities=6%  Similarity=0.196  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.++.|+|++||||||+.
T Consensus         2 ~~~I~l~G~~GsGKST~a   19 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWA   19 (301)
T ss_dssp             CEEEEEECCTTSSHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            468999999999999984

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.08  E-value=0.025  Score=52.15  Aligned_cols=19  Identities=21%  Similarity=0.385  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.++.|+|++||||||+.
T Consensus       257 ~~~lIil~G~pGSGKSTla  275 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFI  275 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            5789999999999999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=92.76  E-value=0.031  Score=43.95  Aligned_cols=18  Identities=17%  Similarity=0.261  Sum_probs=15.9

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|.||.|+|||||.
T Consensus        43 ~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             SCEEEEECCTTSCHHHHH
T ss_pred             CCceEEECCCCCCHHHHH
Confidence            467899999999999985

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.75  E-value=0.027  Score=46.97  Aligned_cols=16  Identities=6%  Similarity=0.088  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++||||||+.
T Consensus         2 ~I~l~G~~GsGKsT~a   17 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQG   17 (223)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5889999999999974

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=92.60  E-value=0.03  Score=50.14  Aligned_cols=18  Identities=28%  Similarity=0.445  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|+||+|||||||.
T Consensus         5 ~~~i~i~GptGsGKTtla   22 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLA   22 (323)
T ss_dssp             CEEEEEECCTTSCHHHHH
T ss_pred             CcEEEEECCCCCCHHHHH
Confidence            347999999999999994

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.58  E-value=0.032  Score=49.78  Aligned_cols=18  Identities=33%  Similarity=0.517  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|+||+|||||||.
T Consensus        10 ~~~i~i~GptgsGKt~la   27 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALA   27 (316)
T ss_dssp             CEEEEEECCTTSCHHHHH
T ss_pred             CcEEEEECCCccCHHHHH
Confidence            457999999999999994

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=92.58  E-value=0.032  Score=47.23  Aligned_cols=18  Identities=28%  Similarity=0.361  Sum_probs=15.4

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.-+.|+||+|+|||||.
T Consensus        45 ~~~vll~G~~GtGKT~la   62 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLA   62 (257)
T ss_dssp             CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEEECcCCCCHHHHH
Confidence            345889999999999985

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.58  E-value=0.031  Score=46.77  Aligned_cols=19  Identities=11%  Similarity=0.032  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|.|++||||||+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~   23 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNR   23 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHH
Confidence            6889999999999999984

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=92.30  E-value=0.038  Score=50.94  Aligned_cols=20  Identities=10%  Similarity=-0.065  Sum_probs=18.6

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|+.++|+||+|||||||.
T Consensus       172 ~rGQr~~IvG~sG~GKTtLl  191 (422)
T 3ice_A          172 GRGQRGLIVAPPKAGKTMLL  191 (422)
T ss_dssp             BTTCEEEEECCSSSSHHHHH
T ss_pred             cCCcEEEEecCCCCChhHHH
Confidence            57999999999999999995

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=92.26  E-value=0.036  Score=47.27  Aligned_cols=19  Identities=5%  Similarity=0.141  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|.|++||||||+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~   44 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAI   44 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            6889999999999999984

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=92.20  E-value=0.11  Score=43.14  Aligned_cols=72  Identities=17%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHc--cCCcEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeE
Q 024989           90 RRRVQICMGLL--KPFKVLLLDEITV--DLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKL  163 (259)
Q Consensus        90 ~qrv~ia~al~--~~p~lllLDEPt~--gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i  163 (259)
                      +..+..|+..+  .+.+++||||.+.  .++......++++|.+  +-....||+++++. +++.++||-|--|+.-+-
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vkH  182 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVSELRPVKH  182 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEEECCCSCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCcceeeecceeC
Confidence            45566666667  5689999999976  3344444568888874  23468899999886 557778999999977553

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=92.11  E-value=0.04  Score=46.21  Aligned_cols=19  Identities=11%  Similarity=0.127  Sum_probs=17.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++++.|++||||||+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~   20 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTAR   20 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            6899999999999999984

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.09  E-value=0.032  Score=49.49  Aligned_cols=42  Identities=19%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      +++++++||.- .|....+..+...+.+..  ....+|+++....
T Consensus       110 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~~  151 (340)
T 1sxj_C          110 GFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH  151 (340)
T ss_dssp             SCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred             CceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCcc
Confidence            57899999974 456677777878776542  3556777777653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=91.97  E-value=0.052  Score=45.72  Aligned_cols=20  Identities=15%  Similarity=0.199  Sum_probs=17.4

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      -++.++.|+||.||||+|..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa   46 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQC   46 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHH
Confidence            36778999999999999974

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=91.94  E-value=0.04  Score=46.36  Aligned_cols=19  Identities=16%  Similarity=0.326  Sum_probs=17.0

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|.|+.||||||+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~   19 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFV   19 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHH
Confidence            4778999999999999984

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=91.83  E-value=0.036  Score=45.62  Aligned_cols=19  Identities=11%  Similarity=0.153  Sum_probs=16.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|+|++||||||+.
T Consensus         2 ~~~~i~i~G~~gsGkst~~   20 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIA   20 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            5678999999999999974

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.81  E-value=0.038  Score=45.57  Aligned_cols=16  Identities=13%  Similarity=0.146  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++||||||+.
T Consensus         2 ~I~l~G~~GsGKsT~a   17 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQA   17 (214)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999974

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=91.80  E-value=0.038  Score=42.39  Aligned_cols=16  Identities=44%  Similarity=0.513  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         5 ~i~v~G~~~~GKSsli   20 (167)
T 1kao_A            5 KVVVLGSGGVGKSALT   20 (167)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999994

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=91.79  E-value=0.038  Score=44.08  Aligned_cols=16  Identities=19%  Similarity=0.204  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|+|||||.
T Consensus        50 ~i~vvG~~g~GKSsll   65 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLL   65 (193)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999995

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.70  E-value=0.04  Score=42.27  Aligned_cols=16  Identities=25%  Similarity=0.422  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         3 ki~v~G~~~~GKSsli   18 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLF   18 (161)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=91.70  E-value=0.039  Score=42.56  Aligned_cols=16  Identities=19%  Similarity=0.364  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         7 ~i~v~G~~~~GKssl~   22 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMI   22 (168)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999995

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=91.64  E-value=0.039  Score=49.20  Aligned_cols=20  Identities=20%  Similarity=0.114  Sum_probs=17.6

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      +.|.-++|+|+||+|||||.
T Consensus       142 ~~g~~vl~~G~sG~GKSt~a  161 (314)
T 1ko7_A          142 VYGVGVLITGDSGIGKSETA  161 (314)
T ss_dssp             ETTEEEEEEESTTSSHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHH
Confidence            45888999999999999984

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=91.60  E-value=0.051  Score=45.48  Aligned_cols=19  Identities=11%  Similarity=0.039  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++-.+.|+|+.||||||+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a   33 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQA   33 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            3567999999999999974

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=91.59  E-value=0.048  Score=46.55  Aligned_cols=19  Identities=11%  Similarity=0.169  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|.|+.||||||+.
T Consensus        23 ~~~~I~ieG~~GsGKST~~   41 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFV   41 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            5678999999999999984

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=91.56  E-value=0.049  Score=44.26  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989          101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      .+|.+|++||.-. +|+.....+.+.+.+.  ..+..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChHh
Confidence            4678999999765 7888877777777542  236788888987653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.55  E-value=0.038  Score=42.23  Aligned_cols=16  Identities=31%  Similarity=0.426  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++++|+.|+|||||.
T Consensus         5 ~i~v~G~~~~GKssl~   20 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALT   20 (166)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3899999999999994

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.45  E-value=0.043  Score=42.87  Aligned_cols=16  Identities=38%  Similarity=0.463  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        10 ~i~v~G~~~~GKSsli   25 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLM   25 (182)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=91.38  E-value=0.044  Score=42.07  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++++|+.|+|||||.
T Consensus         6 ~i~v~G~~~~GKssl~   21 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALT   21 (168)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.35  E-value=0.044  Score=42.22  Aligned_cols=16  Identities=19%  Similarity=0.409  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         5 ~i~v~G~~~~GKssli   20 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIV   20 (170)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999994

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.35  E-value=0.046  Score=42.29  Aligned_cols=16  Identities=31%  Similarity=0.434  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         8 ~i~v~G~~~~GKssli   23 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLV   23 (170)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999995

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=91.33  E-value=0.0017  Score=61.67  Aligned_cols=71  Identities=10%  Similarity=-0.025  Sum_probs=54.7

Q ss_pred             HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH--hccCCeEEEEeCCeEEEe-cChhHHH
Q 024989           97 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL--ENWPSHIVYVAHGKLQLA-MPMDKVK  173 (259)
Q Consensus        97 ~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~--~~~~drv~~l~~G~i~~~-g~~~~~~  173 (259)
                      |||..+ ++||+ ||++.+||. +..+..   ++.+..+.++.++||+|+++  .++++++..+..+.++.. ++++++.
T Consensus        28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~  101 (514)
T 1jcn_A           28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA  101 (514)
T ss_dssp             SCCCGG-GEEEC-CCCCCSCGG-GCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             cccccC-cEEec-cCccCCCcc-eeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence            789999 99999 999999994 433322   34445678899999999998  778899988877777653 5777654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.29  E-value=0.046  Score=42.51  Aligned_cols=16  Identities=31%  Similarity=0.426  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         6 ki~i~G~~~vGKSsl~   21 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLA   21 (175)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCccHHHHH
Confidence            3789999999999995

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=91.28  E-value=0.046  Score=49.64  Aligned_cols=19  Identities=11%  Similarity=0.202  Sum_probs=16.6

Q ss_pred             CCcE--EEEEcCCCCCccccC
Q 024989            3 EPEM--VKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~--~~i~G~sG~GKTtL~   21 (259)
                      +|+.  +.|+|++||||||+.
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~   41 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIA   41 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHH
Confidence            4666  999999999999994

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=91.25  E-value=0.048  Score=45.11  Aligned_cols=18  Identities=6%  Similarity=0.049  Sum_probs=15.7

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |-.+.|+|+.||||||+.
T Consensus         5 ~~~I~l~G~~GsGKsT~a   22 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQC   22 (217)
T ss_dssp             CCEEEEEECTTSSHHHHH
T ss_pred             ceEEEEECCCCCCHHHHH
Confidence            457899999999999974

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=91.25  E-value=0.022  Score=53.83  Aligned_cols=18  Identities=6%  Similarity=0.130  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+.+|+|+||||||||.
T Consensus        60 ~g~n~i~G~NGaGKS~ll   77 (517)
T 4ad8_A           60 GGFCAFTGETGAGKSIIV   77 (517)
T ss_dssp             CSEEEEEESHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHH
Confidence            449999999999999994

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.22  E-value=0.046  Score=42.31  Aligned_cols=15  Identities=27%  Similarity=0.472  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         5 i~ivG~~~~GKSsli   19 (169)
T 3q85_A            5 VMLVGESGVGKSTLA   19 (169)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.20  E-value=0.036  Score=43.62  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCCccccC---CceEE
Q 024989            6 MVKVLGRSAFHDTALT---SSGDL   26 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~---~~G~I   26 (259)
                      -++|+|++|+|||||.   ..|.+
T Consensus        20 ~i~v~G~~~~GKssli~~l~~~~~   43 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQIGEV   43 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCc
Confidence            5899999999999994   44544

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.18  E-value=0.051  Score=50.14  Aligned_cols=18  Identities=11%  Similarity=0.370  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+++|+||+|||||||.
T Consensus         2 ~~~i~i~GptgsGKttla   19 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLS   19 (409)
T ss_dssp             CEEEEEEECSSSSHHHHH
T ss_pred             CcEEEEECcchhhHHHHH
Confidence            457899999999999994

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.15  E-value=0.048  Score=41.99  Aligned_cols=16  Identities=38%  Similarity=0.480  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         5 ki~v~G~~~~GKssli   20 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALT   20 (167)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999994

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=91.15  E-value=0.043  Score=43.12  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=15.6

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|.||+|+|||||.
T Consensus        43 ~~~vll~G~~G~GKT~la   60 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIV   60 (187)
T ss_dssp             SCEEEEESCGGGCHHHHH
T ss_pred             CCceEEECCCCCCHHHHH
Confidence            456889999999999985

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.14  E-value=0.049  Score=42.53  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         9 ~i~v~G~~~~GKSsli   24 (177)
T 1wms_A            9 KVILLGDGGVGKSSLM   24 (177)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999994

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.12  E-value=0.045  Score=42.26  Aligned_cols=15  Identities=33%  Similarity=0.483  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         5 i~~vG~~~~GKSsli   19 (166)
T 3q72_A            5 VLLLGAPGVGKSALA   19 (166)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.07  E-value=0.05  Score=42.00  Aligned_cols=16  Identities=25%  Similarity=0.405  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         5 ~i~v~G~~~~GKssli   20 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLV   20 (172)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.07  E-value=0.046  Score=43.55  Aligned_cols=16  Identities=25%  Similarity=0.258  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        18 ki~ivG~~~vGKSsL~   33 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLL   33 (181)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999995

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=91.06  E-value=0.099  Score=42.06  Aligned_cols=17  Identities=18%  Similarity=0.270  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCCccccCC
Q 024989            6 MVKVLGRSAFHDTALTS   22 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~   22 (259)
                      -++|+|++|+|||||..
T Consensus        35 ki~vvG~~~~GKSsli~   51 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLL   51 (199)
T ss_dssp             EEEEECCTTSCCTTTTT
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            37899999999999963

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.02  E-value=0.047  Score=42.19  Aligned_cols=15  Identities=20%  Similarity=0.412  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         6 i~v~G~~~~GKssli   20 (170)
T 1g16_A            6 ILLIGDSGVGKSCLL   20 (170)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECcCCCCHHHHH
Confidence            789999999999995

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.02  E-value=0.078  Score=41.72  Aligned_cols=17  Identities=18%  Similarity=0.233  Sum_probs=9.0

Q ss_pred             EEEEEcCCCCCccccCC
Q 024989            6 MVKVLGRSAFHDTALTS   22 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~   22 (259)
                      -++|+|+.|+|||||..
T Consensus        10 ki~v~G~~~~GKssl~~   26 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLF   26 (183)
T ss_dssp             EEEEECCCCC-------
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            37899999999999963

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=91.02  E-value=0.059  Score=45.57  Aligned_cols=19  Identities=11%  Similarity=0.076  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|.|++||||||+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~   38 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQS   38 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            5889999999999999984

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=90.99  E-value=0.051  Score=41.93  Aligned_cols=16  Identities=19%  Similarity=0.362  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         8 ~i~v~G~~~~GKSsli   23 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIM   23 (170)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999994

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=90.97  E-value=0.053  Score=42.33  Aligned_cols=15  Identities=20%  Similarity=0.426  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        12 i~v~G~~~~GKssl~   26 (181)
T 3tw8_B           12 LLIIGDSGVGKSSLL   26 (181)
T ss_dssp             EEEECCTTSCHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999994

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.89  E-value=0.98  Score=41.78  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             HHHHccCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHH---HHhcCcEEEEEeCChhHHh
Q 024989           96 CMGLLKPFKVLLLDEI----------TVDLDVLARADLLRFLRKE---CEERGATIIYATHIFDGLE  149 (259)
Q Consensus        96 a~al~~~p~lllLDEP----------t~gLD~~~~~~~~~~l~~~---~~~~g~tiii~sH~~~~~~  149 (259)
                      ..|-...|.++++||-          ..+-|....+.+..+|..+   ....|.-||.+|+..+.+.
T Consensus       259 ~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD  325 (428)
T 4b4t_K          259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD  325 (428)
T ss_dssp             HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred             HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence            3344567999999996          2333444444555555543   2334667888998876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.83  E-value=0.053  Score=41.73  Aligned_cols=15  Identities=20%  Similarity=0.293  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         3 i~~~G~~~~GKssl~   17 (164)
T 1r8s_A            3 ILMVGLDAAGKTTIL   17 (164)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=90.78  E-value=0.054  Score=41.92  Aligned_cols=16  Identities=19%  Similarity=0.277  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         9 ~i~v~G~~~~GKssl~   24 (171)
T 1upt_A            9 RILILGLDGAGKTTIL   24 (171)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999994

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.76  E-value=0.057  Score=43.24  Aligned_cols=16  Identities=25%  Similarity=0.333  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        22 ki~ivG~~~vGKSsL~   37 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALV   37 (184)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=90.72  E-value=0.064  Score=51.04  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=17.8

Q ss_pred             CCcEEEEEcCCCCCccccCC
Q 024989            3 EPEMVKVLGRSAFHDTALTS   22 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~   22 (259)
                      +|+...+.|+||||||||..
T Consensus       224 ~g~~~~ffGlSGtGKTtLs~  243 (529)
T 1j3b_A          224 EGDVAVFFGLSGTGKTTLST  243 (529)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCcEEEEEccccCChhhHhh
Confidence            67899999999999999953

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=90.66  E-value=0.054  Score=42.28  Aligned_cols=16  Identities=31%  Similarity=0.418  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        11 ~i~v~G~~~~GKssli   26 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALT   26 (181)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.61  E-value=0.045  Score=44.40  Aligned_cols=17  Identities=24%  Similarity=0.182  Sum_probs=15.0

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =-++|+|++|+|||||.
T Consensus        26 ~ki~lvG~~~vGKSsLi   42 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLL   42 (198)
T ss_dssp             EEEEEEEETTSSHHHHH
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            35899999999999995

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=90.59  E-value=0.061  Score=44.05  Aligned_cols=16  Identities=25%  Similarity=0.316  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+.|+|||||.
T Consensus        32 ~i~i~G~~g~GKTTl~   47 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLI   47 (221)
T ss_dssp             EEEEEECTTSCHHHHH
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            6899999999999995

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=90.53  E-value=0.059  Score=41.49  Aligned_cols=16  Identities=31%  Similarity=0.457  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         8 ~i~v~G~~~~GKssli   23 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLV   23 (170)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999994

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=90.45  E-value=0.071  Score=44.27  Aligned_cols=18  Identities=11%  Similarity=0.178  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |.+++|-|+.||||||+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~   19 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVI   19 (205)
T ss_dssp             CEEEEEECCTTSCHHHHH
T ss_pred             CCEEEEECCCCCcHHHHH
Confidence            579999999999999973

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=90.41  E-value=0.061  Score=42.42  Aligned_cols=16  Identities=25%  Similarity=0.272  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        13 ki~v~G~~~~GKSsli   28 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVL   28 (195)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.39  E-value=0.057  Score=43.38  Aligned_cols=17  Identities=24%  Similarity=0.174  Sum_probs=15.0

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =-++|+|++|+|||||.
T Consensus        24 ~ki~~vG~~~vGKSsli   40 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLL   40 (190)
T ss_dssp             CEEEEEESTTSSHHHHH
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            35899999999999994

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=90.38  E-value=0.058  Score=42.02  Aligned_cols=16  Identities=25%  Similarity=0.362  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        16 ~i~v~G~~~~GKssli   31 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLI   31 (179)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999994

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=90.36  E-value=0.053  Score=42.94  Aligned_cols=16  Identities=31%  Similarity=0.430  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        25 ~i~v~G~~~~GKSsli   40 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLL   40 (195)
T ss_dssp             EEEEEEBTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=90.32  E-value=0.14  Score=51.19  Aligned_cols=55  Identities=11%  Similarity=0.179  Sum_probs=32.8

Q ss_pred             HHHHHccCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           95 ICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        95 ia~al~~~p~lllLDEPt~----------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      +..|.-+.|-||++||--+          ..+......++..+..+....+..||.+|...+.+.
T Consensus       290 F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD  354 (806)
T 3cf2_A          290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID  354 (806)
T ss_dssp             HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred             HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence            3445556799999999632          122223334555555544445677888888776553

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.31  E-value=0.064  Score=41.86  Aligned_cols=16  Identities=44%  Similarity=0.478  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         8 ki~v~G~~~~GKssl~   23 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLT   23 (178)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999995

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.23  E-value=0.064  Score=43.38  Aligned_cols=16  Identities=25%  Similarity=0.414  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        25 ki~vvG~~~vGKSsLi   40 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLA   40 (195)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=90.22  E-value=0.086  Score=41.10  Aligned_cols=18  Identities=28%  Similarity=0.534  Sum_probs=15.6

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      .-.++|+|++|+|||||.
T Consensus         8 ~~~i~v~G~~~~GKssl~   25 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLL   25 (178)
T ss_dssp             CCEEEEESCTTTTHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            346899999999999995

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.20  E-value=0.056  Score=42.70  Aligned_cols=15  Identities=27%  Similarity=0.397  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         4 i~v~G~~~~GKSsli   18 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLI   18 (190)
T ss_dssp             EEEEEBTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=90.14  E-value=0.05  Score=51.75  Aligned_cols=19  Identities=21%  Similarity=0.307  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|+...+.|+||+|||||.
T Consensus       212 ~g~~~~ffGlSGtGKTTLs  230 (524)
T 1ii2_A          212 QGDVTVFFGLSGTGKTTLS  230 (524)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCcchhhhh
Confidence            5789999999999999995

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=90.13  E-value=0.068  Score=42.08  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus         7 i~v~G~~~~GKSsli   21 (189)
T 4dsu_A            7 LVVVGADGVGKSALT   21 (189)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999994

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=90.12  E-value=0.058  Score=42.98  Aligned_cols=16  Identities=19%  Similarity=0.370  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+.|+|||||.
T Consensus        25 ~i~v~G~~~~GKSsli   40 (195)
T 1svi_A           25 EIALAGRSNVGKSSFI   40 (195)
T ss_dssp             EEEEEEBTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999995

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=90.11  E-value=0.067  Score=42.66  Aligned_cols=16  Identities=31%  Similarity=0.391  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        27 ki~v~G~~~~GKSsLi   42 (193)
T 2oil_A           27 KVVLIGESGVGKTNLL   42 (193)
T ss_dssp             EEEEESSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3799999999999995

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=90.10  E-value=0.077  Score=45.82  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=23.9

Q ss_pred             HHHccCC-cEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989           97 MGLLKPF-KVLLLDEITVDLDVLARADLLRFLRK  129 (259)
Q Consensus        97 ~al~~~p-~lllLDEPt~gLD~~~~~~~~~~l~~  129 (259)
                      .++...| .++++||. ..+++..+..+++.|.+
T Consensus       113 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~  145 (311)
T 4fcw_A          113 EAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD  145 (311)
T ss_dssp             HHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence            3443333 79999998 67899888888888865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.03  E-value=0.069  Score=41.89  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        20 ki~v~G~~~~GKSsli   35 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALT   35 (187)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=90.01  E-value=0.069  Score=41.92  Aligned_cols=16  Identities=31%  Similarity=0.337  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         7 ~i~~~G~~~~GKssl~   22 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLL   22 (186)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.00  E-value=0.069  Score=41.75  Aligned_cols=16  Identities=31%  Similarity=0.378  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        12 ~i~v~G~~~~GKssli   27 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLL   27 (180)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999995

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=89.93  E-value=0.074  Score=41.63  Aligned_cols=16  Identities=19%  Similarity=0.287  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        14 ki~v~G~~~~GKSsli   29 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLV   29 (181)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999994

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=89.89  E-value=0.071  Score=42.30  Aligned_cols=16  Identities=31%  Similarity=0.426  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++++|+.|+|||||.
T Consensus        23 ki~vvG~~~~GKSsli   38 (190)
T 3con_A           23 KLVVVGAGGVGKSALT   38 (190)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999994

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=89.88  E-value=0.09  Score=48.81  Aligned_cols=18  Identities=11%  Similarity=0.196  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+++|+|++|+||||+.
T Consensus        99 ~~vI~ivG~~GvGKTTla  116 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTA  116 (432)
T ss_dssp             CCCEEEECCSSSSTTHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            458999999999999984

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=89.86  E-value=0.074  Score=48.13  Aligned_cols=19  Identities=5%  Similarity=-0.025  Sum_probs=0.0

Q ss_pred             CCCcEEEEEcCCCCCcccc
Q 024989            2 VEPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL   20 (259)
                      ..+..++|+|++|||||||
T Consensus        33 ~~~~~~~i~G~~G~GKs~~   51 (392)
T 4ag6_A           33 RTNSNWTILAKPGAGKSFT   51 (392)
T ss_dssp             BCCCCEEEECCTTSSHHHH
T ss_pred             cccCceEEEcCCCCCHHHH

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.80  E-value=0.073  Score=43.39  Aligned_cols=16  Identities=19%  Similarity=0.204  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|+|||||.
T Consensus        14 ~i~~~G~~g~GKTsl~   29 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLL   29 (218)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5789999999999995

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=89.79  E-value=0.075  Score=42.09  Aligned_cols=16  Identities=19%  Similarity=0.368  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         9 ki~v~G~~~~GKSsli   24 (208)
T 3clv_A            9 KTVLLGESSVGKSSIV   24 (208)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3799999999999994

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=89.78  E-value=0.074  Score=41.87  Aligned_cols=16  Identities=31%  Similarity=0.432  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        20 ki~v~G~~~~GKSsl~   35 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALT   35 (183)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3689999999999994

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=89.75  E-value=0.074  Score=42.64  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        16 ki~v~G~~~~GKSsli   31 (206)
T 2bov_A           16 KVIMVGSGGVGKSALT   31 (206)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=89.75  E-value=0.076  Score=43.62  Aligned_cols=17  Identities=18%  Similarity=0.132  Sum_probs=14.9

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      -.++|+|++|+|||||.
T Consensus        39 ~~i~ivG~~gvGKTtl~   55 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLI   55 (226)
T ss_dssp             EEEEEEESTTSSHHHHH
T ss_pred             eEEEEEcCCCCCHHHHH
Confidence            35889999999999995

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.72  E-value=0.066  Score=48.33  Aligned_cols=15  Identities=27%  Similarity=0.487  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        40 I~vvG~~g~GKSTLl   54 (361)
T 2qag_A           40 LMVVGESGLGKSTLI   54 (361)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEcCCCCCHHHHH
Confidence            689999999999994

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=89.66  E-value=0.071  Score=41.99  Aligned_cols=16  Identities=19%  Similarity=0.270  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        12 ki~v~G~~~~GKSsli   27 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLL   27 (186)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=89.64  E-value=0.077  Score=41.27  Aligned_cols=16  Identities=13%  Similarity=0.223  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        17 ~i~v~G~~~~GKSsli   32 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLL   32 (179)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=89.61  E-value=0.072  Score=42.26  Aligned_cols=16  Identities=38%  Similarity=0.405  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         9 ki~v~G~~~vGKSsli   24 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALL   24 (184)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3689999999999994

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=89.59  E-value=0.078  Score=41.52  Aligned_cols=16  Identities=25%  Similarity=0.266  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        10 ki~v~G~~~~GKssl~   25 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLL   25 (182)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=89.54  E-value=0.079  Score=41.94  Aligned_cols=15  Identities=13%  Similarity=0.009  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        17 i~vvG~~~~GKssL~   31 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNL   31 (198)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=89.47  E-value=0.078  Score=47.20  Aligned_cols=28  Identities=21%  Similarity=0.080  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCCCccccC----CceEEEEc
Q 024989            2 VEPEMVKVLGRSAFHDTALT----SSGDLSYL   29 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~----~~G~I~~~   29 (259)
                      +.|.-+.|.|+||+||||+.    ..|.-.+.
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~~G~~lv~  176 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLINKNHLFVG  176 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTTTCEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHcCCEEEe
Confidence            45778999999999999984    55654443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=89.39  E-value=0.077  Score=41.68  Aligned_cols=16  Identities=25%  Similarity=0.468  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         8 ki~~~G~~~~GKSsli   23 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLT   23 (181)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999994

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=89.37  E-value=0.083  Score=41.76  Aligned_cols=16  Identities=19%  Similarity=0.202  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        20 ~i~v~G~~~~GKssl~   35 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTIL   35 (186)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=89.21  E-value=0.088  Score=42.18  Aligned_cols=17  Identities=35%  Similarity=0.475  Sum_probs=4.1

Q ss_pred             EEEEEcCCCCCccccCC
Q 024989            6 MVKVLGRSAFHDTALTS   22 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~   22 (259)
                      -++|+|++|+|||||..
T Consensus        22 ~i~v~G~~~~GKssli~   38 (208)
T 2yc2_C           22 KVAVVGEATVGKSALIS   38 (208)
T ss_dssp             EEEEC------------
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            47899999999999964

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.19  E-value=0.087  Score=41.90  Aligned_cols=16  Identities=19%  Similarity=0.347  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        24 ki~vvG~~~~GKSsli   39 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFL   39 (189)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999995

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=89.15  E-value=0.1  Score=49.66  Aligned_cols=19  Identities=21%  Similarity=0.300  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|....+.|+||+|||||.
T Consensus       240 ~g~~~lffGlSGtGKTTLs  258 (540)
T 2olr_A          240 KGDVAVFFGLSGTGKTTLS  258 (540)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCHHHHh
Confidence            5789999999999999994

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=89.12  E-value=0.09  Score=41.80  Aligned_cols=16  Identities=38%  Similarity=0.474  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        22 ki~v~G~~~~GKSsli   37 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLT   37 (189)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999995

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=89.10  E-value=0.089  Score=42.24  Aligned_cols=43  Identities=28%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989          101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  146 (259)
Q Consensus       101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~  146 (259)
                      .++.++++||. ..+++.....+...+.+.  ..+..+|++|+...
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence            46889999995 567777777787777653  23567777877654

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=89.09  E-value=0.087  Score=50.18  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=16.9

Q ss_pred             CC-cEEEEEcCCCCCccccC
Q 024989            3 EP-EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~-e~~~i~G~sG~GKTtL~   21 (259)
                      .| +...+.|+||+|||||.
T Consensus       233 ~g~~~~~ffGlSGtGKTTLs  252 (532)
T 1ytm_A          233 EGKNTAIFFGLSGTGKTTLS  252 (532)
T ss_dssp             TSCSEEEEECCTTSSHHHHH
T ss_pred             CCCeEEEEEecCCCCHHHHh
Confidence            35 78999999999999995

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=89.00  E-value=0.093  Score=42.16  Aligned_cols=16  Identities=38%  Similarity=0.463  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        10 ki~v~G~~~~GKSsli   25 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLM   25 (207)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999994

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=89.00  E-value=0.087  Score=42.15  Aligned_cols=16  Identities=19%  Similarity=0.374  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        25 ki~vvG~~~~GKSsli   40 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIV   40 (192)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3799999999999995

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=88.84  E-value=0.095  Score=41.63  Aligned_cols=16  Identities=19%  Similarity=0.331  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        18 ki~v~G~~~~GKSsli   33 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLL   33 (196)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3799999999999994

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=88.80  E-value=0.097  Score=45.35  Aligned_cols=16  Identities=19%  Similarity=0.293  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|||||||.
T Consensus         5 kI~lvG~~nvGKSTL~   20 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLF   20 (272)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999995

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=88.77  E-value=0.092  Score=41.78  Aligned_cols=16  Identities=25%  Similarity=0.214  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        23 ki~v~G~~~~GKSsli   38 (190)
T 2h57_A           23 HVLCLGLDNSGKTTII   38 (190)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=88.77  E-value=0.097  Score=41.76  Aligned_cols=15  Identities=13%  Similarity=0.332  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus        24 i~v~G~~~~GKSsli   38 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLL   38 (191)
T ss_dssp             EEEESSTTSSHHHHH
T ss_pred             EEEECcCCCCHHHHH
Confidence            789999999999995

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=88.71  E-value=0.098  Score=42.02  Aligned_cols=16  Identities=19%  Similarity=0.401  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        10 ki~v~G~~~~GKSsli   25 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFL   25 (203)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=88.71  E-value=0.1  Score=41.54  Aligned_cols=16  Identities=19%  Similarity=0.148  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        19 ki~v~G~~~~GKSsl~   34 (199)
T 4bas_A           19 QVVMCGLDNSGKTTII   34 (199)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=88.70  E-value=0.098  Score=42.15  Aligned_cols=43  Identities=21%  Similarity=0.165  Sum_probs=26.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHH---HHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989          102 PFKVLLLDEITVDLDVLARAD---LLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~---~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      +..++++| -|   |..+-..   ++..+.+.....+.++|++.|..+..
T Consensus        82 ~~~i~v~d-v~---~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~  127 (192)
T 2cjw_A           82 DAYLIVYS-IT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV  127 (192)
T ss_dssp             SEEEEEEE-TT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred             CEEEEEEE-CC---CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence            56788888 23   3444333   33444443323478999999988754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.66  E-value=0.092  Score=42.81  Aligned_cols=16  Identities=19%  Similarity=0.403  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        28 ki~lvG~~~vGKSsLi   43 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLV   43 (201)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999995

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=88.65  E-value=0.1  Score=40.36  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=26.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      +..+|++||. ..|++..+..+++.|...  .....+|.+|+
T Consensus        76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~  114 (145)
T 3n70_A           76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE--HRPFRLIGIGD  114 (145)
T ss_dssp             TTSCEEEECG-GGSCHHHHHHHHHHHHSS--SCSSCEEEEES
T ss_pred             CCcEEEEcCh-HHCCHHHHHHHHHHHhhc--CCCEEEEEECC
Confidence            4578999998 478888888888888432  22344555554

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.65  E-value=0.095  Score=41.74  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        10 ki~vvG~~~~GKSsli   25 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLV   25 (199)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCcHHHHH
Confidence            4799999999999994

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.64  E-value=0.1  Score=41.82  Aligned_cols=16  Identities=25%  Similarity=0.524  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        30 ki~v~G~~~vGKSsli   45 (196)
T 2atv_A           30 KLAIFGRAGVGKSALV   45 (196)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999995

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=88.64  E-value=0.1  Score=41.68  Aligned_cols=16  Identities=38%  Similarity=0.524  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        23 ki~vvG~~~vGKTsLi   38 (187)
T 3c5c_A           23 NLAILGRRGAGKSALT   38 (187)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCcHHHHH
Confidence            3789999999999995

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=88.55  E-value=0.1  Score=41.80  Aligned_cols=15  Identities=27%  Similarity=0.448  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        29 i~vvG~~~~GKSsLi   43 (192)
T 2il1_A           29 VIIIGSRGVGKTSLM   43 (192)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.52  E-value=0.096  Score=41.56  Aligned_cols=16  Identities=19%  Similarity=0.227  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        18 ~i~v~G~~~~GKssl~   33 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTIL   33 (187)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999995

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.41  E-value=0.099  Score=41.71  Aligned_cols=15  Identities=20%  Similarity=0.430  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus        26 i~v~G~~~~GKSsli   40 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFL   40 (191)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=88.38  E-value=0.13  Score=44.82  Aligned_cols=18  Identities=17%  Similarity=0.202  Sum_probs=16.3

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |..+.|.||.|+|||||.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll   48 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLL   48 (350)
T ss_dssp             CSEEEEECCTTSSHHHHH
T ss_pred             CCeEEEECCCcCCHHHHH
Confidence            468999999999999995

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=88.35  E-value=0.1  Score=42.21  Aligned_cols=15  Identities=20%  Similarity=0.308  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        28 i~v~G~~~~GKSsLi   42 (200)
T 2o52_A           28 FLVIGSAGTGKSCLL   42 (200)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECcCCCCHHHHH
Confidence            789999999999995

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=88.31  E-value=0.11  Score=42.22  Aligned_cols=16  Identities=25%  Similarity=0.129  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         9 ki~vvG~~~~GKTsli   24 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLF   24 (214)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=88.28  E-value=0.08  Score=41.45  Aligned_cols=16  Identities=25%  Similarity=0.324  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus         9 ki~~vG~~~vGKTsli   24 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLI   24 (178)
T ss_dssp             EEEEECCGGGCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.28  E-value=0.11  Score=44.04  Aligned_cols=16  Identities=13%  Similarity=0.266  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|+|||||.
T Consensus        24 ~I~lvG~~g~GKStl~   39 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAG   39 (260)
T ss_dssp             EEEEEECTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999995

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=88.27  E-value=0.12  Score=42.97  Aligned_cols=16  Identities=13%  Similarity=0.181  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      ++.|+||.||||+|..
T Consensus         2 ~Iil~GpPGsGKgTqa   17 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQA   17 (206)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4679999999999974

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=88.22  E-value=0.092  Score=42.97  Aligned_cols=15  Identities=13%  Similarity=0.116  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+|++||||||+.
T Consensus         2 ilV~Gg~~SGKS~~A   16 (180)
T 1c9k_A            2 ILVTGGARSGKSRHA   16 (180)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECCCCCcHHHHH
Confidence            689999999999994

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=88.18  E-value=0.11  Score=41.43  Aligned_cols=16  Identities=31%  Similarity=0.401  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        25 ki~~vG~~~~GKSsl~   40 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLL   40 (194)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999994

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=88.10  E-value=0.11  Score=41.30  Aligned_cols=15  Identities=13%  Similarity=0.208  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus        25 i~v~G~~~~GKSsli   39 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFV   39 (188)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=88.10  E-value=0.12  Score=42.16  Aligned_cols=16  Identities=13%  Similarity=0.260  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        13 ki~vvG~~~~GKSsli   28 (218)
T 4djt_A           13 KICLIGDGGVGKTTYI   28 (218)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.09  E-value=0.11  Score=41.82  Aligned_cols=16  Identities=19%  Similarity=0.358  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        22 ~i~v~G~~~~GKSsli   37 (213)
T 3cph_A           22 KILLIGDSGVGKSCLL   37 (213)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=88.09  E-value=0.11  Score=41.56  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        22 ki~~~G~~~~GKssl~   37 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLV   37 (201)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=88.07  E-value=0.11  Score=41.81  Aligned_cols=16  Identities=19%  Similarity=0.239  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        31 ki~v~G~~~vGKSsLi   46 (192)
T 2b6h_A           31 RILMVGLDAAGKTTIL   46 (192)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999995

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=88.04  E-value=0.11  Score=44.65  Aligned_cols=15  Identities=27%  Similarity=0.487  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        11 I~vvG~~g~GKSTLi   25 (274)
T 3t5d_A           11 LMVVGESGLGKSTLI   25 (274)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            799999999999994

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=88.02  E-value=0.12  Score=40.99  Aligned_cols=16  Identities=19%  Similarity=0.412  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        17 ~i~v~G~~~~GKssli   32 (195)
T 1x3s_A           17 KILIIGESGVGKSSLL   32 (195)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999994

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.02  E-value=0.12  Score=41.65  Aligned_cols=16  Identities=13%  Similarity=0.270  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        30 ki~v~G~~~~GKSsli   45 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFL   45 (199)
T ss_dssp             EEEEESSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999995

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=88.00  E-value=0.11  Score=41.93  Aligned_cols=16  Identities=19%  Similarity=0.343  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        10 ki~v~G~~~~GKSsli   25 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLL   25 (206)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=87.85  E-value=0.11  Score=41.80  Aligned_cols=15  Identities=33%  Similarity=0.474  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus        27 i~vvG~~~~GKSsli   41 (201)
T 3oes_A           27 VVILGYRCVGKTSLA   41 (201)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999994

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=87.80  E-value=0.13  Score=45.15  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      .-+++|+|+.|+|||||.
T Consensus        10 ~g~v~ivG~~nvGKSTLi   27 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLL   27 (308)
T ss_dssp             EEEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCcHHHHH
Confidence            358999999999999994

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.80  E-value=0.12  Score=42.00  Aligned_cols=16  Identities=31%  Similarity=0.355  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        27 ki~vvG~~~~GKSsli   42 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLL   42 (207)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4799999999999994

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=87.78  E-value=0.12  Score=42.67  Aligned_cols=16  Identities=6%  Similarity=0.198  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        31 kI~vvG~~~vGKSsLi   46 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFM   46 (228)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999995

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=87.72  E-value=0.14  Score=48.17  Aligned_cols=20  Identities=15%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|+..+|+|+||+|||||.
T Consensus       149 ~kGq~~~i~G~sGvGKTtL~  168 (473)
T 1sky_E          149 IKGGKIGLFGGAGVGKTVLI  168 (473)
T ss_dssp             ETTCEEEEECCSSSCHHHHH
T ss_pred             ccCCEEEEECCCCCCccHHH
Confidence            57999999999999999995

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=87.70  E-value=0.12  Score=42.30  Aligned_cols=16  Identities=38%  Similarity=0.405  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        30 ki~vvG~~~vGKSsLi   45 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALL   45 (205)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999994

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=87.62  E-value=0.12  Score=41.56  Aligned_cols=16  Identities=6%  Similarity=0.194  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        22 ki~~vG~~~vGKTsLi   37 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQ   37 (196)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=87.61  E-value=0.12  Score=42.26  Aligned_cols=16  Identities=25%  Similarity=0.328  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        36 ki~vvG~~~vGKSsli   51 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLL   51 (214)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4889999999999995

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=87.48  E-value=0.1  Score=41.23  Aligned_cols=16  Identities=19%  Similarity=0.227  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        23 ~i~v~G~~~~GKSsli   38 (181)
T 2h17_A           23 KVIIVGLDNAGKTTIL   38 (181)
T ss_dssp             EEEEEEETTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999995

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=87.47  E-value=0.1  Score=41.40  Aligned_cols=16  Identities=25%  Similarity=0.245  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        24 ~i~v~G~~~~GKssli   39 (189)
T 2x77_A           24 RVLMLGLDNAGKTSIL   39 (189)
T ss_dssp             EEEEEEETTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999994

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.35  E-value=0.11  Score=41.92  Aligned_cols=17  Identities=29%  Similarity=0.282  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccCC
Q 024989            6 MVKVLGRSAFHDTALTS   22 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~   22 (259)
                      -++|+|++|+|||||..
T Consensus        32 ki~v~G~~~~GKSsli~   48 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLI   48 (204)
Confidence            37899999999999973

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=87.42  E-value=0.14  Score=44.92  Aligned_cols=18  Identities=17%  Similarity=0.418  Sum_probs=15.7

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      .-+++|+|++|+|||||.
T Consensus         7 ~g~V~ivG~~nvGKSTLl   24 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLL   24 (301)
T ss_dssp             EEEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            347999999999999994

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=87.40  E-value=0.12  Score=41.61  Aligned_cols=16  Identities=25%  Similarity=0.349  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        27 ki~vvG~~~~GKSsli   42 (201)
T 2gco_A           27 KLVIVGDGACGKTCLL   42 (201)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=87.39  E-value=0.13  Score=42.16  Aligned_cols=17  Identities=12%  Similarity=0.229  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccCC
Q 024989            6 MVKVLGRSAFHDTALTS   22 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~~   22 (259)
                      -++|+|+.|+|||||..
T Consensus        17 ki~v~G~~~~GKSsli~   33 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVK   33 (221)
T ss_dssp             EEEEEECTTSSHHHHHT
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            37899999999999953

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=87.37  E-value=0.14  Score=41.69  Aligned_cols=16  Identities=25%  Similarity=0.301  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        27 ki~vvG~~~~GKSsLi   42 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFL   42 (217)
T ss_dssp             EEEEESCTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3799999999999995

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=87.26  E-value=0.13  Score=40.95  Aligned_cols=16  Identities=31%  Similarity=0.337  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        20 ki~v~G~~~~GKssli   35 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLL   35 (194)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=87.23  E-value=0.13  Score=41.75  Aligned_cols=16  Identities=31%  Similarity=0.337  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        32 ki~vvG~~~~GKSsLi   47 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLL   47 (204)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999995

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=87.00  E-value=0.17  Score=44.90  Aligned_cols=18  Identities=17%  Similarity=0.015  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|.||.|+|||||.
T Consensus        45 ~~~vll~G~~G~GKT~la   62 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVS   62 (384)
T ss_dssp             CCEEEEEECTTSSHHHHH
T ss_pred             CCcEEEECCCCCCHHHHH
Confidence            567999999999999985

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=86.88  E-value=0.17  Score=49.26  Aligned_cols=19  Identities=21%  Similarity=0.106  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|.+||||||+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlA   69 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVS   69 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHH
Confidence            5778999999999999984

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=86.80  E-value=0.18  Score=43.52  Aligned_cols=41  Identities=24%  Similarity=0.194  Sum_probs=27.7

Q ss_pred             CCcEEEEeCCCC--------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989          102 PFKVLLLDEITV--------DLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus       102 ~p~lllLDEPt~--------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ++.+|++||--.        ..+......+++.+.+.  ..+..+|++|+.
T Consensus       130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~  178 (309)
T 3syl_A          130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--RDDLVVILAGYA  178 (309)
T ss_dssp             TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred             CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence            578999999752        33677777777777642  235677777754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=86.67  E-value=0.15  Score=43.38  Aligned_cols=17  Identities=29%  Similarity=0.161  Sum_probs=15.0

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      ..+.|.||+|+|||+|.
T Consensus        65 ~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             eEEEEECCCCCcHHHHH
Confidence            46889999999999985

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.55  E-value=0.16  Score=44.57  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCcccc
Q 024989            7 VKVLGRSAFHDTAL   20 (259)
Q Consensus         7 ~~i~G~sG~GKTtL   20 (259)
                      +.|.||+|+||||+
T Consensus        61 ~ll~G~~G~GKT~l   74 (353)
T 1sxj_D           61 MLFYGPPGTGKTST   74 (353)
T ss_dssp             EEEECSTTSSHHHH
T ss_pred             EEEECCCCCCHHHH

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=86.52  E-value=0.16  Score=44.20  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=15.4

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .++.|.||.|+|||||.
T Consensus        31 ~~v~i~G~~G~GKT~L~   47 (357)
T 2fna_A           31 PITLVLGLRRTGKSSII   47 (357)
T ss_dssp             SEEEEEESTTSSHHHHH
T ss_pred             CcEEEECCCCCCHHHHH
Confidence            47899999999999995

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=86.50  E-value=0.13  Score=39.67  Aligned_cols=40  Identities=13%  Similarity=0.092  Sum_probs=28.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      +..+|++||. ..+++..+..+++.+.+.. ..+..+|.+|+
T Consensus        75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn  114 (143)
T 3co5_A           75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAE-RCRVRVIASCS  114 (143)
T ss_dssp             TTSEEEEEEC-TTCCHHHHHHHHHHHHHHT-TTTCEEEEEEE
T ss_pred             CCCeEEEeCh-HHCCHHHHHHHHHHHHhCC-CCCEEEEEecC
Confidence            4578999996 4678888888888887642 23455666654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=86.46  E-value=0.15  Score=43.62  Aligned_cols=16  Identities=19%  Similarity=0.241  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+.|||||||.
T Consensus         3 kI~lvG~~n~GKSTL~   18 (256)
T 3iby_A            3 HALLIGNPNCGKTTLF   18 (256)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999994

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=86.25  E-value=0.17  Score=41.92  Aligned_cols=15  Identities=20%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus        40 VvlvG~~~vGKSSLl   54 (211)
T 2g3y_A           40 VVLIGEQGVGKSTLA   54 (211)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            799999999999995

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=86.17  E-value=2.2  Score=39.23  Aligned_cols=76  Identities=13%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHhcCcEEEEEeCChh----
Q 024989           83 HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDV----------LARADLLRFLRKECEERGATIIYATHIFD----  146 (259)
Q Consensus        83 ~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~----------~~~~~~~~~l~~~~~~~g~tiii~sH~~~----  146 (259)
                      ..+|..+-  .+.++.+.  ++|+++++|..+.-...          .....+...|+.++++.|++||+++|--.    
T Consensus       291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~  368 (444)
T 2q6t_A          291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA  368 (444)
T ss_dssp             TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred             CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence            45666654  34455554  58999999998754432          22346778888888888999999999321    


Q ss_pred             ---------------HHhccCCeEEEEeC
Q 024989          147 ---------------GLENWPSHIVYVAH  160 (259)
Q Consensus       147 ---------------~~~~~~drv~~l~~  160 (259)
                                     .+++.||.|++|..
T Consensus       369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          369 RPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             SSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             CCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence                           35677888888853

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=86.11  E-value=0.17  Score=43.22  Aligned_cols=16  Identities=25%  Similarity=0.237  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|||||||.
T Consensus         7 kI~lvG~~nvGKTsL~   22 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLF   22 (258)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3799999999999995

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=86.11  E-value=0.17  Score=46.51  Aligned_cols=18  Identities=6%  Similarity=0.202  Sum_probs=16.0

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      .+..++|+|++|+|||||
T Consensus        21 ~~~kvgIVG~pnvGKSTL   38 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTF   38 (396)
T ss_dssp             SCCCEEEECCSSSSHHHH
T ss_pred             CCCEEEEECCCCCCHHHH
Confidence            356799999999999999

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=86.07  E-value=0.19  Score=44.52  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989          103 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus       103 p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      |.+|++||.- .|++.....+.+.+.+.   ....+++.|.
T Consensus       190 ~~vl~IDEi~-~l~~~~~~~L~~~le~~---~~~~~ii~t~  226 (368)
T 3uk6_A          190 PGVLFIDEVH-MLDIESFSFLNRALESD---MAPVLIMATN  226 (368)
T ss_dssp             BCEEEEESGG-GSBHHHHHHHHHHTTCT---TCCEEEEEES
T ss_pred             CceEEEhhcc-ccChHHHHHHHHHhhCc---CCCeeeeecc
Confidence            6799999975 57777766666655432   1234555554

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=86.05  E-value=0.16  Score=40.98  Aligned_cols=15  Identities=13%  Similarity=0.361  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus        32 i~vvG~~~vGKSsli   46 (201)
T 2hup_A           32 LVLVGDASVGKTCVV   46 (201)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECcCCCCHHHHH
Confidence            789999999999995

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=85.94  E-value=0.16  Score=41.01  Aligned_cols=16  Identities=19%  Similarity=0.241  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        11 ki~i~G~~~~GKTsli   26 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCML   26 (212)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999994

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=85.79  E-value=0.19  Score=42.73  Aligned_cols=16  Identities=13%  Similarity=0.127  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.||||||+.
T Consensus        10 ~~~~~G~pGsGKsT~a   25 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQA   25 (230)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             ceeeECCCCCCHHHHH
Confidence            4799999999999974

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=85.70  E-value=0.087  Score=44.66  Aligned_cols=16  Identities=25%  Similarity=0.227  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -+.|.||+|+|||+|.
T Consensus        46 ~vll~G~~GtGKT~la   61 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCCBCSSCSSHHHHH
T ss_pred             eEEEECCCCCcHHHHH
Confidence            3679999999999985

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=85.58  E-value=0.19  Score=43.02  Aligned_cols=18  Identities=17%  Similarity=0.460  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|.||+|+|||+|.
T Consensus        50 ~~~vll~G~~GtGKT~la   67 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIA   67 (310)
T ss_dssp             CCCEEEECCTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            556889999999999985

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=85.55  E-value=0.22  Score=47.89  Aligned_cols=19  Identities=11%  Similarity=0.022  Sum_probs=16.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|.+||||||+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA  413 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIA  413 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             cceEEEeecCCCCCHHHHH
Confidence            3568999999999999984

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=85.54  E-value=0.23  Score=43.80  Aligned_cols=18  Identities=11%  Similarity=0.078  Sum_probs=15.9

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.-+.|.||.|+|||+|.
T Consensus        45 ~~~iLL~GppGtGKT~la   62 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLA   62 (322)
T ss_dssp             CSEEEEESSSSSCHHHHH
T ss_pred             CceEEEECCCCccHHHHH
Confidence            467899999999999995

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=85.52  E-value=0.083  Score=43.12  Aligned_cols=16  Identities=19%  Similarity=0.208  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|+|||||.
T Consensus        31 ~i~v~G~~~~GKSsli   46 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAI   46 (223)
T ss_dssp             EEEEEESCHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            5899999999999995

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=85.52  E-value=0.23  Score=43.20  Aligned_cols=18  Identities=11%  Similarity=0.191  Sum_probs=15.2

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +-.+.|.||.|+|||+|.
T Consensus        36 p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             CSEEEEEECTTSCHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            346788899999999985

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=85.40  E-value=0.2  Score=41.14  Aligned_cols=16  Identities=19%  Similarity=0.349  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus        15 ki~v~G~~~vGKSsli   30 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLL   30 (223)
T ss_dssp             EEEEESCTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3799999999999994

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=85.39  E-value=0.18  Score=43.36  Aligned_cols=16  Identities=19%  Similarity=0.297  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+.|||||||.
T Consensus         5 ~I~lvG~~n~GKSTLi   20 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLF   20 (274)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999994

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=85.31  E-value=0.2  Score=41.05  Aligned_cols=16  Identities=19%  Similarity=0.254  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        29 ki~vvG~~~vGKSsL~   44 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAML   44 (214)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            3789999999999995

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=85.31  E-value=0.21  Score=44.55  Aligned_cols=19  Identities=16%  Similarity=0.214  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+..+.|.||+|+|||++.
T Consensus        50 ~~~~vll~GppGtGKT~la   68 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLA   68 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            4567899999999999985

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=85.28  E-value=0.24  Score=43.54  Aligned_cols=49  Identities=24%  Similarity=0.397  Sum_probs=25.6

Q ss_pred             cCCcEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeC-ChhHHhc
Q 024989          101 KPFKVLLLDEIT-VDLDVLARADLLR-FLRKECEERGATIIYATH-IFDGLEN  150 (259)
Q Consensus       101 ~~p~lllLDEPt-~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH-~~~~~~~  150 (259)
                      .++++|++||.- ..++...+..++. ++..... .++.+|++|+ .++.+..
T Consensus       213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~-~~~~~IitSN~~~~~l~~  264 (308)
T 2qgz_A          213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRML-EELPTFFTSNYSFADLER  264 (308)
T ss_dssp             HTSSEEEEETCCC------CTTTTHHHHHHHHHH-HTCCEEEEESSCHHHHHT
T ss_pred             cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHH-CCCcEEEECCCCHHHHHH
Confidence            468999999982 3444444444444 6654323 3456666666 4455444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-16
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-12
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	6e-12
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-11
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-10
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-10
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	1e-09
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-09
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-09
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-09
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-09
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	5e-09
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-09
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	7e-09
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-08
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	4e-08
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-07
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-06
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-06
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-05
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-04

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 73.0 bits (179), Expect = 3e-16
 Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 32  EWRREVAFAGFEVPIQMDVSAEKMIFGVAGI-----DPQRRAELIKVLDI-DLSWRMHKV 85
           + + ++ F   E+ +   +S E  +  VA +     +     + ++ +++ DL  ++ ++
Sbjct: 67  KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGEL 126

Query: 86  SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145
           S G  RRVQ+   LL   ++ +LD+  V +D  ++  +L+ + +  +E+G  II +    
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 186

Query: 146 D 146
            
Sbjct: 187 S 187

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           +R     ++L I+  L+    ++S GQR+RV +   ++    VLL+DE   +LD   R  
Sbjct: 115 KRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           +   ++K  ++   T IY TH           I  +  G+L 
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 216

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 61.4 bits (149), Expect = 6e-12
 Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 69  ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128
           ++ ++ +   + + +++S GQ++RV I   L     ++L D+ T  LD      +++ L+
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189

Query: 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           K  EE G T++  TH  + +  +   I+Y+  G+++
Sbjct: 190 KLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVE 224

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (141), Expect = 7e-11
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           +R  EL+ ++ +          +S GQ++RV I   L    KVLL DE T  LD      
Sbjct: 119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           +L  L+      G TI+  TH  D ++     +  +++G+L
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 32  EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE--------------LIKVLDID 77
             R +VA     V +  D  A  + +       + + E              +   LD  
Sbjct: 86  SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI 145

Query: 78  LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137
           +      +S GQR+R+ I   LL+   +L+LDE T  LD  +   +   L +    +  T
Sbjct: 146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRT 203

Query: 138 IIYATHIFDGLENWPSHIVYVAHGKL 163
            +   H    +E     IV V  G +
Sbjct: 204 SLVIAHRLSTIEQA-DEIVVVEDGII 228

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 65  QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124
           +    L   L   L      +S G+++ + I   L+   K+L++DE ++ L  +  +++ 
Sbjct: 120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179

Query: 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178
             ++K  +E G TI+       G      +   +  G++ L     ++ +   +
Sbjct: 180 EVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMV 232

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 65  QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 121
           +R  + +  + ID          +S GQ++RV I   L     VLL DE T  LD     
Sbjct: 127 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 186

Query: 122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           ++LR   ++  E G T++  TH      +  SH++++  GK++
Sbjct: 187 EVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 34  RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRR 91
            R         P    V     +        +   ++   L +D  L    +++S G+ +
Sbjct: 73  HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132

Query: 92  RVQICMGLLKPF-------KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144
           RV++   +L+         ++LLLDE    LDV  ++ L + L   C++ G  I+ ++H 
Sbjct: 133 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ-GLAIVMSSHD 191

Query: 145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179
            +           +  GK+  +   ++V     L+
Sbjct: 192 LNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLA 226

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 32  EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL------------- 78
             RR+V     +  +      + +     G+  ++     K+                  
Sbjct: 74  WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133

Query: 79  SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138
             +   +S GQR+R+ I   L+   K+L+ DE T  LD  +   ++R + K C  +G T+
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTV 191

Query: 139 IYATHIFDGLENWPSHIVYVAHGKL 163
           I   H    ++N    I+ +  GK+
Sbjct: 192 IIIAHRLSTVKNA-DRIIVMEKGKI 215

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 68  AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127
            +  +  +  L      +S GQR R+ +   + K   + LLD     LDV     +    
Sbjct: 142 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 201

Query: 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
             +      T I  T   + L      I+ +  G   
Sbjct: 202 VCK-LMANKTRILVTSKMEHLRKA-DKILILHQGSSY 236

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 33  WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-------------LDIDLS 79
            R ++     +  +  D   E ++ G      +   E  K+              D ++ 
Sbjct: 90  LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 149

Query: 80  WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139
            R  K+S GQ++R+ I    L    +L+LDE T  LD+ + + +   L    ++R  T +
Sbjct: 150 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR--TTL 207

Query: 140 YATHIFDGLENWPSHIVYVAHGKL 163
              H    + +    IV + +G +
Sbjct: 208 IVAHRLSTITHA-DKIVVIENGHI 230

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 15/147 (10%)

Query: 32  EWRREVAFAGFEVPIQMDVSAEKMIFGV-------AGIDPQRRAELIKVL-------DID 77
              R+VA  G E  +      E + +G+              ++     +       D +
Sbjct: 85  YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144

Query: 78  LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137
           +     ++S GQR+ V +   L++   VL+LD+ T  LD  ++  + + L +  E    +
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204

Query: 138 IIYATHIFDGLENWPSHIVYVAHGKLQ 164
           ++  T     +E    HI+++  G ++
Sbjct: 205 VLLITQHLSLVEQA-DHILFLEGGAIR 230

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 52.9 bits (127), Expect = 5e-09
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 32  EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-------RRAELIKVLDID------- 77
            WR ++ F   +  I      E + +G+ G             A     ++         
Sbjct: 73  NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132

Query: 78  LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137
           +  R  K+S GQR+R+ I    L+  K+L+LDE T  LD  + + + + L      +G T
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT 190

Query: 138 IIYATHIFDGLENWPSHIVYVAHGKL 163
            +   H    + +    I ++  G++
Sbjct: 191 TLVIAHRLSTIVD-ADKIYFIEKGQI 215

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.7 bits (126), Expect = 7e-09
 Identities = 19/101 (18%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 65  QRRAELIKVLDIDLSW--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           ++  ++++ L +   +  +  ++S GQ + V+I   L+   K++++DE    +      D
Sbjct: 129 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 188

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163
           +   +  E + +G T +   H  D + N+  H+  + +G++
Sbjct: 189 IFNHVL-ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 10/152 (6%)

Query: 32  EWRREVAFAGFEVPIQMDVSAE---KMIFGVAGIDPQRRAELIKV------LDIDLSWRM 82
           E R+ +++   E     ++      + + G          E+++       L   +  R+
Sbjct: 72  EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV 131

Query: 83  HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142
              S G  R++ I   L+   ++ +LDE T  LDVL   ++ + L++  +E   TI+ ++
Sbjct: 132 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSS 190

Query: 143 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174
           H    +E     I  + +G +     ++++KE
Sbjct: 191 HNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 55  MIFGVAGIDPQRRA-ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 111
            +  V   +  +R  E+ ++L +   L+ +  ++S GQR+RV +   +++  +V L+DE 
Sbjct: 107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166

Query: 112 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
             +LD   R  +   L+K   + G T IY TH           I  +  G LQ
Sbjct: 167 LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           +R  E+ K+LDI   L+    ++S  Q++RV +   L+K   +LLLDE   +LD   R  
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
               +++     G T++  +H    +      +  +  GKL 
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 63  DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120
           DP+R  +  + L I+  L      +S G+++RV +   L+   K+LLLDE    LD   +
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163

Query: 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
            +    L    ++   T+++ TH           I  V  GKL 
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 65  QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122
           QR  ++ +VL +   L  +   +S GQR+RV I   L+    V LLDE   +LD   R  
Sbjct: 109 QRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168

Query: 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
           +   + +  +  G T+IY TH           IV +  G++ 
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 210

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 13/156 (8%)

Query: 22  SSGDLSYLG------GEWRREVAF-----AGFEVPIQMDVSAEKMIFGVAGIDPQRRAEL 70
             G++   G         RR + F     A F         A  +         +R  E+
Sbjct: 51  DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM 110

Query: 71  IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128
            + L I   L  +  ++S G+R+RV +   L+   ++LLLDE    +D+  +  L+  LR
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170

Query: 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164
               E    I++ TH           +  + +G++ 
Sbjct: 171 FVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.71
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.62
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.48
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.08
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.57
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.22
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.97
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.91
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.81
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.72
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.36
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.72
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.59
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.54
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.43
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.31
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.26
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.23
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.21
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.18
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.17
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.07
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.05
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.02
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.83
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.79
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.67
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.64
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.6
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.57
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.56
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.54
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.42
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.4
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.32
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.15
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.08
d1okkd2	207	GTPase domain of the signal recognition particle r	94.99
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.95
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.95
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.94
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.86
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.66
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.62
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.61
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.56
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.56
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.52
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.51
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.46
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.29
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.24
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.21
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.18
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.12
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.12
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.98
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.97
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.84
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.84
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.83
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.81
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.79
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.75
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.63
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.48
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.45
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.35
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.33
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.32
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.96
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.95
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.81
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.79
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.59
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.56
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.37
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.26
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.08
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.04
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.87
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.8
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.52
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.38
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.32
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.23
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	91.22
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	91.15
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	90.98
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	90.94
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	90.94
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.85
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	90.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.77
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.62
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.32
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.28
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	90.28
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.24
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.15
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.11
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.02
d2fh5b1	207	Signal recognition particle receptor beta-subunit	89.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	89.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	89.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.86
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	89.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.77
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.62
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.54
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	89.53
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.48
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	89.48
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	89.47
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.42
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.4
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.34
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.31
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.25
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.24
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	89.23
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	89.11
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	89.04
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	89.03
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	88.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	88.84
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	88.82
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.81
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	88.78
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	88.76
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	88.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	88.63
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.58
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.55
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	88.51
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	87.68
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.67
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	87.64
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	87.58
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	87.52
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	87.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	87.41
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	87.39
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	87.29
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	87.26
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	87.09
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	86.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	86.75
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	86.68
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	86.63
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	86.58
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	86.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	86.49
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.37
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.57
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.51
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	85.5
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.47
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.3
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	85.26
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.23
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.17
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.93
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	84.89
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	84.64
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	84.28
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.2
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	82.38
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	82.2
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	82.16
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	82.1
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	82.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.75
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.04

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6.4e-51  Score=352.53  Aligned_cols=174  Identities=21%  Similarity=0.225  Sum_probs=151.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++++||++|++.+|+.+|+.+++. .  .++.+.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~  110 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK  110 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCH
Confidence            799999999999999999         6999999999864      456999999999999999987653 2  234553


Q ss_pred             ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                          +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+||||.++..++++|++++++.|+||
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~ti  190 (239)
T d1v43a3         111 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT  190 (239)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence                3456799999996  5788999999999999999999999999999999999999999999999999987779999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |+||||++++.++||||++|++|+|++.|+++++.+..
T Consensus       191 i~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P  228 (239)
T d1v43a3         191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP  228 (239)
T ss_dssp             EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999999997653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2e-50  Score=349.77  Aligned_cols=174  Identities=24%  Similarity=0.276  Sum_probs=156.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|+++            ++++||++|++.+++.+|+.+++. +  
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~  107 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK  107 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHH
Confidence            799999999999999999         5999999999753            356999999999999999987653 2  


Q ss_pred             cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      .++.+.    +++.++++.+++.  .++++++|||||||||+|||||+++|++|||||||+||||.++..+++.|+++++
T Consensus       108 ~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~  187 (240)
T d1g2912         108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR  187 (240)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHh
Confidence            344443    3467899999996  4788999999999999999999999999999999999999999999999999987


Q ss_pred             hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      +.|+|||++|||++++..+||||++|++|+|++.|+++++....
T Consensus       188 ~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P  231 (240)
T d1g2912         188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP  231 (240)
T ss_dssp             HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             ccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            77999999999999999999999999999999999999997654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.9e-51  Score=350.13  Aligned_cols=174  Identities=26%  Similarity=0.295  Sum_probs=128.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID-   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~-   63 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++++||++|++.+|+.+|+.+++. +  ..+.+ 
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~  104 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK  104 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCH
Confidence            799999999999999999         5999999999864      456999999999999999987653 2  22322 


Q ss_pred             ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989           64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  138 (259)
Q Consensus        64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti  138 (259)
                         .+++.++++.+++.  .++++.+|||||||||+|||||+++|++|||||||+||||.++..+++.|+++.++.|+||
T Consensus       105 ~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~ti  184 (232)
T d2awna2         105 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM  184 (232)
T ss_dssp             CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence               24577899999986  4788999999999999999999999999999999999999999999999999988789999


Q ss_pred             EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |++|||++++..+||||++|++|+|++.|+++++....
T Consensus       185 i~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P  222 (232)
T d2awna2         185 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP  222 (232)
T ss_dssp             EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence            99999999999999999999999999999999997643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=2e-50  Score=347.44  Aligned_cols=174  Identities=23%  Similarity=0.281  Sum_probs=158.0

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCC-CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG-ID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~-~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|+++      ++++||++|++.+|+.+|+.+++. +  .++ ..
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~  104 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccH
Confidence            799999999999999999         6999999999875      356999999999999999987652 2  223 24


Q ss_pred             HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989           64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  141 (259)
Q Consensus        64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~  141 (259)
                      .+++.++++.+++.  .++++.+|||||||||+|||||+++|++|||||||+||||.++..++++|+++.++.|.|||++
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v  184 (229)
T d3d31a2         105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (229)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            56788999999986  5788999999999999999999999999999999999999999999999999987789999999


Q ss_pred             eCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          142 THIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       142 sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      |||++++..+||||++|++|++++.|+++++.+..
T Consensus       185 tHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P  219 (229)
T d3d31a2         185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP  219 (229)
T ss_dssp             ESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred             cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999997643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.6e-50  Score=349.14  Aligned_cols=174  Identities=22%  Similarity=0.280  Sum_probs=157.2

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHH-hcc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMI-FGV--   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~-~~~--   59 (259)
                      +||+++|+||||||||||         +++|+|.++|+++           ++++||++|++.+|+.+|+.+++ +++  
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~  109 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN  109 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHh
Confidence            699999999999999999         6999999999863           35699999999999999998765 332  


Q ss_pred             CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      ++.+.    +++.++++.+++.  .++++++|||||||||+|||||+++|++|||||||+||||.++..+++.|++++++
T Consensus       110 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~  189 (242)
T d1oxxk2         110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR  189 (242)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhc
Confidence            34443    4467899999996  47899999999999999999999999999999999999999999999999999877


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .|+|||++|||++++.++||||++|++|+|++.|+++++.+..
T Consensus       190 ~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P  232 (242)
T d1oxxk2         190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP  232 (242)
T ss_dssp             HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            7999999999999999999999999999999999999998653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-50  Score=348.58  Aligned_cols=173  Identities=23%  Similarity=0.277  Sum_probs=155.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~   59 (259)
                      +||+++|+||||||||||         +++|+|.++|+++           ++++||++|++.+++.+|+.+++. +  .
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~  109 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  109 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHH
Confidence            699999999999999999         5999999999864           246999999999999999987542 2  2


Q ss_pred             CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989           60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  133 (259)
Q Consensus        60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~  133 (259)
                      .+.+    .+++.++++.+++.  .++++++|||||||||+|||||+++|++|||||||+||||.++..+++.|++++++
T Consensus       110 ~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~  189 (240)
T d3dhwc1         110 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR  189 (240)
T ss_dssp             TTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhc
Confidence            3333    24577899999996  57889999999999999999999999999999999999999999999999999887


Q ss_pred             cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .|+|||++|||++++..+||||++|++|+|++.|+++++.+.
T Consensus       190 ~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~  231 (240)
T d3dhwc1         190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH  231 (240)
T ss_dssp             HCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred             cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            799999999999999999999999999999999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.6e-50  Score=346.94  Aligned_cols=175  Identities=21%  Similarity=0.323  Sum_probs=157.7

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccCCCCH-
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP-   64 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~-   64 (259)
                      +++|+++|+||||||||||         +++|+|.++|+++      ++.+||++|++.+|+.+|+.+++ +++...+. 
T Consensus        22 ~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             ECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             eCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            3568999999999999999         6999999999865      45799999999999999998765 45544442 


Q ss_pred             ---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           65 ---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        65 ---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                         +++.++++.+++.  .++++.+|||||||||+|||||+++|++|||||||+||||.++..+++.|++++++.|+|||
T Consensus       102 ~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi  181 (240)
T d2onka1         102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL  181 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence               4567899999996  57889999999999999999999999999999999999999999999999999887799999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      ++|||++++.++||||++|++|++++.|+++++.+..
T Consensus       182 ~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             EEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence            9999999999999999999999999999999998643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.4e-48  Score=334.90  Aligned_cols=166  Identities=21%  Similarity=0.346  Sum_probs=145.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH-hc--
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI-FG--   58 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~-~~--   58 (259)
                      +||+++|+||||||||||         +++|+|.++|.++            ++++||++|++.+++.+|+.+++ ++  
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~  109 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI  109 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHH
Confidence            799999999999999999         5999999999864            23599999999999999998754 22  


Q ss_pred             c---CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989           59 V---AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  128 (259)
Q Consensus        59 ~---~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~  128 (259)
                      +   .+.+.    +++.++++.+++.   .++++.+|||||||||+|||||+++|++|||||||+||||.++..++++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~  189 (230)
T d1l2ta_         110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK  189 (230)
T ss_dssp             TCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHH
Confidence            1   12332    2355778888885   366899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecCh
Q 024989          129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  169 (259)
Q Consensus       129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~  169 (259)
                      +++++.|+|||++|||++++ ++||||++|++|+|+.+|++
T Consensus       190 ~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         190 KLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            99887899999999999987 69999999999999998864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.9e-47  Score=334.88  Aligned_cols=173  Identities=22%  Similarity=0.314  Sum_probs=153.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA   52 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~   52 (259)
                      +||+++|+||||||||||         +++|+|.++|+++                     ++++||++|++.+++.+|+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv  106 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV  106 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhc
Confidence            799999999999999999         5899999999864                     2469999999999999998


Q ss_pred             HHHH-hc---cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989           53 EKMI-FG---VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  121 (259)
Q Consensus        53 ~~~~-~~---~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~  121 (259)
                      .+++ ++   ..+.+.    +++.++++.+++.   .++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus       107 ~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~  186 (258)
T d1b0ua_         107 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG  186 (258)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHH
T ss_pred             chhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHH
Confidence            7654 22   233443    3466789999985   35678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989          122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  176 (259)
Q Consensus       122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~  176 (259)
                      .++++|+++++ .|+|||++|||++++..+||||++|++|+|++.|+++++....
T Consensus       187 ~i~~ll~~l~~-~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P  240 (258)
T d1b0ua_         187 EVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP  240 (258)
T ss_dssp             HHHHHHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHhhhhhcc-cCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99999999976 5999999999999999999999999999999999999998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.5e-47  Score=332.51  Aligned_cols=172  Identities=15%  Similarity=0.219  Sum_probs=148.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-ccCC-C
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GVAG-I   62 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~~~-~   62 (259)
                      +||+++|+||||||||||         +++|+|.++|+++.         ..++|+||+..+|+.+|+.+++. +... .
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~  110 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK  110 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC
Confidence            799999999999999999         59999999998752         24899999999999999987643 2211 1


Q ss_pred             --C--HHHHHHHHHHc-CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           63 --D--PQRRAELIKVL-DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        63 --~--~~~~~~~l~~~-~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                        .  .+..+++++.+ ++.  .++++++|||||||||+|||||+++|++|||||||+||||.++.+++++|+++++ .|
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g  189 (240)
T d1ji0a_         111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG  189 (240)
T ss_dssp             CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred             CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-CC
Confidence              1  12344556555 342  5778999999999999999999999999999999999999999999999999976 59


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +|||++|||++++.++||||++|++|++++.|+++++.+.
T Consensus       190 ~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         190 TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence            9999999999999999999999999999999999998764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8e-47  Score=327.44  Aligned_cols=173  Identities=20%  Similarity=0.297  Sum_probs=154.0

Q ss_pred             CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCC
Q 024989            2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGI   62 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~   62 (259)
                      -+||+++|+||||||||||         +++|+|.++|+++       ++.++|+||+..+++.+|+.+++.   .+++.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~  105 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS  105 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCC
Confidence            3799999999999999999         5999999999874       456999999999999999887542   23344


Q ss_pred             CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989           63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  136 (259)
Q Consensus        63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~  136 (259)
                      +.    +.++++++.+++.  .++++.+||||||||++|||||+++|++|||||||+||||.+++.++++|+++.+ .|+
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~  184 (238)
T d1vpla_         106 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGL  184 (238)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCC
Confidence            43    2356788888885  4778999999999999999999999999999999999999999999999999875 599


Q ss_pred             EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      |||++||+++++..+||||++|++|++++.|+++++.+.
T Consensus       185 tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         185 TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             EEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             EEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            999999999999999999999999999999999999764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.8e-46  Score=328.24  Aligned_cols=171  Identities=13%  Similarity=0.201  Sum_probs=149.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-cc----
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GV----   59 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~----   59 (259)
                      +||+++|+||||||||||         +++|+|.++|+++.         ..++|+||++.+++.+|+.+++. +.    
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~  108 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG  108 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhcc
Confidence            799999999999999999         58999999998752         34999999999999999987542 21    


Q ss_pred             ----------CC--CCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           60 ----------AG--IDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        60 ----------~~--~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                                ..  ...   +++.++++.+++.  .++++.+|||||||||+|||||+++|++|||||||+||||.++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~  188 (254)
T d1g6ha_         109 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD  188 (254)
T ss_dssp             SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred             ccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHH
Confidence                      01  111   3456788888885  467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++++|+++++ .|+|||++|||++++.++||||++|++|+++++|+++|+..
T Consensus       189 i~~~i~~l~~-~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         189 IFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             HHHHHHHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred             HHHHHHHHHH-CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence            9999999865 69999999999999999999999999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-44  Score=310.63  Aligned_cols=171  Identities=22%  Similarity=0.302  Sum_probs=141.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCC-CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAG-ID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~-~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|+ .|+.+++ ++... ..
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~  117 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPT  117 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcccch
Confidence            799999999999999999         5899999999864        467999999998875 4777654 44332 22


Q ss_pred             HHHHH---------HHHHHcC--CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRA---------ELIKVLD--ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~---------~~l~~~~--l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .....         +.++.+.  ++  .++.+.+|||||||||+|||||+++|++|||||||++||+.+...+++.|.++
T Consensus       118 ~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l  197 (251)
T d1jj7a_         118 MEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES  197 (251)
T ss_dssp             HHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHH
Confidence            22221         2233331  11  24566789999999999999999999999999999999999999999999998


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      .++.|+|||+|||+++.+. .||||++|++|+|++.|+++++.+.
T Consensus       198 ~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~  241 (251)
T d1jj7a_         198 PERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEK  241 (251)
T ss_dssp             GGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             hhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            7767999999999999876 4999999999999999999999865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-43  Score=306.67  Aligned_cols=169  Identities=22%  Similarity=0.324  Sum_probs=142.3

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|. .|+.+++ ++....+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~  106 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSV  106 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTTCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCC-ccccccccccCccccH
Confidence            799999999999999999         5899999999874        467999999988775 5777665 44444455


Q ss_pred             HHHHHHHHHcCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.+.++..++       +      ......+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.|+++.
T Consensus       107 ~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~  186 (241)
T d2pmka1         107 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC  186 (241)
T ss_dssp             HHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh
Confidence            555444444332       1      123457999999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        +|+|+|+|||+++.+. .||||++|++|+|++.|+++++.++
T Consensus       187 --~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~  227 (241)
T d2pmka1         187 --KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE  227 (241)
T ss_dssp             --TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHS
T ss_pred             --CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence              3899999999999875 5999999999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.8e-43  Score=307.70  Aligned_cols=170  Identities=22%  Similarity=0.281  Sum_probs=142.9

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhcc-CCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|.....++..++. ...+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~  119 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR  119 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCH
Confidence            799999999999999999         5899999999864        45699999999888765555555553 33455


Q ss_pred             HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++           +  ..+.+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.|+++.
T Consensus       120 ~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~  199 (253)
T d3b60a1         120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ  199 (253)
T ss_dssp             HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc
Confidence            555554444332           1  234567899999999999999999999999999999999999999999999985


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .|+|||+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus       200 --~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         200 --KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  240 (253)
T ss_dssp             --TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             --cCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence              3899999999999875 6999999999999999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-43  Score=305.20  Aligned_cols=172  Identities=18%  Similarity=0.286  Sum_probs=148.4

Q ss_pred             CCcEEEEEcCCCCCcccc--------CCceEEEEcCeecc--------ccEEEecccCCCCccCcHHHHHh-ccCC-CCH
Q 024989            3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEWR--------REVAFAGFEVPIQMDVSAEKMIF-GVAG-IDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~~--------~~i~~v~~~~~~~~~lt~~~~~~-~~~~-~~~   64 (259)
                      +||+++|+||||||||||        +++|+|.++|+++.        ...+|++|+.......++.+++. +... ...
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT  103 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHH
Confidence            799999999999999999        48999999998642        24788888766555566766542 3322 235


Q ss_pred             HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc-------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989           65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-------PFKVLLLDEITVDLDVLARADLLRFLRKECEERG  135 (259)
Q Consensus        65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~-------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g  135 (259)
                      +.+.++++.+++.  .++++.+|||||||||+||+||++       +|++|||||||+|||+.++..++++|+++++ .|
T Consensus       104 ~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g  182 (231)
T d1l7vc_         104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QG  182 (231)
T ss_dssp             HHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence            6678899999985  577899999999999999999997       7799999999999999999999999999876 59


Q ss_pred             cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +|||++|||++++.++|||+++|++|++++.|+++++.+.
T Consensus       183 ~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             CEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             CEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence            9999999999999999999999999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.1e-43  Score=308.48  Aligned_cols=169  Identities=20%  Similarity=0.327  Sum_probs=141.8

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCC-CC
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAG-ID   63 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~-~~   63 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        +++++|++|++.+|+. |+.+++. +... .+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~  105 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYT  105 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheecccccccc
Confidence            799999999999999999         5899999999864        5679999999988876 7777653 3322 34


Q ss_pred             HHHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989           64 PQRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  130 (259)
Q Consensus        64 ~~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~  130 (259)
                      .+...+.++..++.         .    ..+..+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l  185 (242)
T d1mv5a_         106 DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL  185 (242)
T ss_dssp             HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            44455555544331         1    1234579999999999999999999999999999999999999999999988


Q ss_pred             HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                      +  .|+|||++||+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus       186 ~--~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         186 M--KGRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             H--TTSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHHH
T ss_pred             c--CCCEEEEEECCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            5  38999999999998865 999999999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2e-42  Score=302.25  Aligned_cols=169  Identities=20%  Similarity=0.247  Sum_probs=144.1

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP   64 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~   64 (259)
                      +||+++|+||||||||||         +++|+|.++|.++        ++.++|++|++.+|. .|+++++ ++....+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~~~~  121 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTATD  121 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSSCCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccCcCCCH
Confidence            799999999999999999         5899999999864        467999999988775 4777665 55444456


Q ss_pred             HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989           65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  131 (259)
Q Consensus        65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~  131 (259)
                      +++.++++..++.         .+    ....+||||||||++|||||+++|++|||||||++||+.+...+++.|.++.
T Consensus       122 ~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~  201 (255)
T d2hyda1         122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS  201 (255)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence            6666666666541         12    2346799999999999999999999999999999999999999999999875


Q ss_pred             HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989          132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  175 (259)
Q Consensus       132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  175 (259)
                        .++|+|+|||+++.+. .||||++|++|+|++.|+++++.+.
T Consensus       202 --~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         202 --KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAK  242 (255)
T ss_dssp             --TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHT
T ss_pred             --cCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence              3789999999999875 6999999999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-40  Score=293.07  Aligned_cols=163  Identities=23%  Similarity=0.269  Sum_probs=132.6

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK   72 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~   72 (259)
                      +||+++|+||||||||||         +++|+|.++|     +++|++|.+.+++. |+.+++ ++. ..+......+++
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-----~i~~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~~~~~~  133 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-----RVSFCSQFSWIMPG-TIKENIIFGV-SYDEYRYKSVVK  133 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-----CEEEECSSCCCCSE-EHHHHHTTTS-CCCHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-----EEEEEeccccccCc-eeeccccccc-cccchHHHHHHH
Confidence            799999999999999999         5899999998     48999999877765 676655 333 234444444444


Q ss_pred             HcCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989           73 VLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII  139 (259)
Q Consensus        73 ~~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii  139 (259)
                      ..++       .      ..+...+|||||||||+|||||+++|++|||||||++||+.+...+++.+..... .|+|+|
T Consensus       134 ~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi  212 (281)
T d1r0wa_         134 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRI  212 (281)
T ss_dssp             HTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEE
T ss_pred             HHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEE
Confidence            4332       1      1234567999999999999999999999999999999999999999876443333 589999


Q ss_pred             EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989          140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  174 (259)
Q Consensus       140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  174 (259)
                      ++||+++.+ +.||||++|++|++++.|+++++..
T Consensus       213 ~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         213 LVTSKMEHL-RKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             EECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEechHHHH-HhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999877 5699999999999999999999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.4e-38  Score=266.42  Aligned_cols=154  Identities=19%  Similarity=0.316  Sum_probs=131.5

Q ss_pred             CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh---ccCC--CCHH
Q 024989            3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF---GVAG--IDPQ   65 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~---~~~~--~~~~   65 (259)
                      +||+++|+||||||||||         +++|+|.++|.++   +.+++|++|+..++..+++++++.   ..++  .+.+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~  105 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN  105 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHH
Confidence            799999999999999999         5999999999875   457999999988888899887642   2233  3456


Q ss_pred             HHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           66 RRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        66 ~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ++.+.++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++.++.|.+||.++|+
T Consensus       106 ~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~  185 (200)
T d1sgwa_         106 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE  185 (200)
T ss_dssp             HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC
T ss_pred             HHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence            677788888863 5678999999999999999999999999999999999999999999999999987777777777777


Q ss_pred             hhHHhccCCeEEEEeC
Q 024989          145 FDGLENWPSHIVYVAH  160 (259)
Q Consensus       145 ~~~~~~~~drv~~l~~  160 (259)
                      ++    +||++.+|++
T Consensus       186 l~----~~D~~~~l~~  197 (200)
T d1sgwa_         186 LS----YCDVNENLHK  197 (200)
T ss_dssp             CT----TSSEEEEGGG
T ss_pred             hh----hcchhhheee
Confidence            53    7999998864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.62  E-value=1.3e-17  Score=134.21  Aligned_cols=147  Identities=11%  Similarity=0.017  Sum_probs=92.4

Q ss_pred             EEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHc
Q 024989            7 VKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL   74 (259)
Q Consensus         7 ~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~   74 (259)
                      ++|+||||||||||         ++.|.+...+....   ++.++............... ..... ..       ...+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-------~~~~   73 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK-FFTSK-KL-------VGSY   73 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEET-TCCCS-SE-------ETTE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhh-hhhhh-hh-------hhhh
Confidence            78999999999999         37888888775421   12222111100000000000 00000 00       0000


Q ss_pred             CCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989           75 DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  154 (259)
Q Consensus        75 ~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr  154 (259)
                        ..+....++|+|++++.++++++..+|+++++|||....+  ....+++.+.+..+..+.++|+++|+.. ...+|++
T Consensus        74 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~-~~~~~~~  148 (178)
T d1ye8a1          74 --GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD-VHPLVKE  148 (178)
T ss_dssp             --EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC-CSHHHHH
T ss_pred             --hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCCEEEEEEccHH-HHHhhce
Confidence              0112234689999999999999999999999999854432  3345666666666556899999999975 5668999


Q ss_pred             EEEEeCCeEEEec
Q 024989          155 IVYVAHGKLQLAM  167 (259)
Q Consensus       155 v~~l~~G~i~~~g  167 (259)
                      +..+.+|+++.-.
T Consensus       149 i~~~~~~~i~~v~  161 (178)
T d1ye8a1         149 IRRLPGAVLIELT  161 (178)
T ss_dssp             HHTCTTCEEEECC
T ss_pred             EEEEeCCEEEEEC
Confidence            9999999998654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=2e-10  Score=102.73  Aligned_cols=75  Identities=19%  Similarity=0.298  Sum_probs=61.6

Q ss_pred             CCcCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           82 MHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      +..||||||.+++||..+    ..++++++||||+++||+..+..+.++|.++. ..+.-+|++||+...+. .||+++.
T Consensus       330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~~~Q~I~iTH~~~~~~-~ad~~~~  407 (427)
T d1w1wa_         330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKNTMFE-KSDALVG  407 (427)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHH-hcccEEE
Confidence            467899999998876544    46778999999999999999999999998874 34567999999987555 5899775


Q ss_pred             E
Q 024989          158 V  158 (259)
Q Consensus       158 l  158 (259)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=1.5e-07  Score=80.69  Aligned_cols=77  Identities=22%  Similarity=0.291  Sum_probs=63.8

Q ss_pred             CCcCCHHHHHHHHHHHH----HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989           82 MHKVSDGQRRRVQICMG----LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  157 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~a----l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~  157 (259)
                      +..+|+|+|+...++..    ....|.++++|||-++|+|.....+.+.|++..+  +.-||++||....+. .+|+++.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~-~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVME-AADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGG-GCSEEEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-hcccEEE
Confidence            56799999998877665    3456789999999999999999999999998753  578999999988776 4798865


Q ss_pred             --EeCC
Q 024989          158 --VAHG  161 (259)
Q Consensus       158 --l~~G  161 (259)
                        +.+|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence              4555

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.22  E-value=9.1e-06  Score=67.45  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHh
Q 024989           89 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLE  149 (259)
Q Consensus        89 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~  149 (259)
                      +-+++.-+.-.+.+..++|+||+..|=++.....+. .++..+. +.+..++++||+.+...
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~-~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH-ERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEECCCHHHHT
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHh-hcCcceEEeeechhhhh
Confidence            334444444445677799999999999998877755 4444454 46889999999976654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1.9e-05  Score=65.76  Aligned_cols=50  Identities=20%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             HccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHH
Q 024989           99 LLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        99 l~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      -+.+..++|+||+..|=+|.....+. ..+..+..+.+..+|++||..+..
T Consensus       117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            45566799999999999998887764 556666555567889999986543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=1.1e-05  Score=67.57  Aligned_cols=47  Identities=13%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             HHccCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989           98 GLLKPFKVLLLDEITV-----DLDVLARADLLRFLRKECEERGATIIYATHI  144 (259)
Q Consensus        98 al~~~p~lllLDEPt~-----gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~  144 (259)
                      ....+|+++++|--++     --|......++..|+.+++..|++||++.|-
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            3457999999995432     1266677788888888888889999999994

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.72  E-value=6.9e-05  Score=62.71  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=32.4

Q ss_pred             HccCCcEEEEeCCCCCCCH--------HHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           99 LLKPFKVLLLDEITVDLDV--------LARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        99 l~~~p~lllLDEPt~gLD~--------~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      --.+|+++++| |..-+++        .....+...|++++++.+++||+++|--
T Consensus       144 ~~~~~~~vvID-~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~  197 (277)
T d1cr2a_         144 SGLGCDVIILD-HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (277)
T ss_dssp             HTTCCSEEEEE-EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             hccCcceEEEc-ccccccccccccchhHHHHHHHHHHHHHhhhccccceeecccc
Confidence            45689999999 3333332        2345567778889888999999999954

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.36  E-value=0.00013  Score=59.40  Aligned_cols=61  Identities=7%  Similarity=-0.011  Sum_probs=43.9

Q ss_pred             ccCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh----------hHHhccCCeEEEEeC
Q 024989          100 LKPFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVAH  160 (259)
Q Consensus       100 ~~~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~----------~~~~~~~drv~~l~~  160 (259)
                      -.+|++++.|--   ..+.+......+...+.+++++.+.+++++.|--          ..+..+||-++.|+.
T Consensus       114 ~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         114 DFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             hcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence            357999999954   3445677766677777777777899999998742          235567888887753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=6.8e-05  Score=57.38  Aligned_cols=19  Identities=21%  Similarity=0.253  Sum_probs=16.7

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |++  +++|+|++|||||||.
T Consensus         1 m~P--vi~itG~~GSGKTTL~   19 (170)
T d1np6a_           1 MIP--LLAFAAWSGTGKTTLL   19 (170)
T ss_dssp             CCC--EEEEECCTTSCHHHHH
T ss_pred             CCC--EEEEEcCCCCCHHHHH
Confidence            555  8999999999999994

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.0012  Score=51.70  Aligned_cols=46  Identities=15%  Similarity=0.165  Sum_probs=27.7

Q ss_pred             HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989           99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus        99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      .+.+-..+|+|  ..+++...+..+.++.++..  ....+++...+.+.+
T Consensus        61 ~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~--~~~~~v~l~~~~e~~  106 (172)
T d1yj5a2          61 ALRQGKRVVID--NTNPDVPSRARYIQCAKDAG--VPCRCFNFCATIEQA  106 (172)
T ss_dssp             HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHT--CCEEEEEECCCHHHH
T ss_pred             HHHCCCCceee--CcCCCHHHHHHHHHHHHhcC--CCEEEEEeCCCHHHH
Confidence            33444567888  56788888888777665431  234555555555543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.00016  Score=56.78  Aligned_cols=18  Identities=22%  Similarity=0.283  Sum_probs=16.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |.++.|+||||||||||.
T Consensus         2 G~iivl~GpsG~GK~tl~   19 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVV   19 (182)
T ss_dssp             CCEEEEECSTTSSHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            789999999999999984

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.019  Score=47.84  Aligned_cols=70  Identities=16%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             HHHHHHHc--cCCcEEEEeCCCCCC-------C---------HHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-------
Q 024989           93 VQICMGLL--KPFKVLLLDEITVDL-------D---------VLARADLLRFLRKECEERGATIIYATHIFDG-------  147 (259)
Q Consensus        93 v~ia~al~--~~p~lllLDEPt~gL-------D---------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~-------  147 (259)
                      +.++..|+  .+++++|+|=-++-.       +         .......+..+..++.+.+.++|++.|-...       
T Consensus       121 ~~~i~~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~  200 (263)
T d1u94a1         121 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN  200 (263)
T ss_dssp             HHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-----------
T ss_pred             HHHHHHHHhcCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEEeccccccCC
Confidence            44444444  467899999775443       1         1112234455556666679999999996543       


Q ss_pred             ---------HhccCCeEEEEeCCe
Q 024989          148 ---------LENWPSHIVYVAHGK  162 (259)
Q Consensus       148 ---------~~~~~drv~~l~~G~  162 (259)
                               +..+++.++.|.+..
T Consensus       201 ~~~~~GG~al~~~~~~rl~l~k~~  224 (263)
T d1u94a1         201 PETTTGGNALKFYASVRLDIRRIG  224 (263)
T ss_dssp             ---CTTCSHHHHHCSEEEEEEEEE
T ss_pred             CccccccchhheeeEEEEEEEecc
Confidence                     234566666665433

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.54  E-value=0.00024  Score=54.47  Aligned_cols=19  Identities=5%  Similarity=0.183  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .|+++.|.||+||||||+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia   21 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIA   21 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            5889999999999999973

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.43  E-value=0.00034  Score=53.45  Aligned_cols=19  Identities=11%  Similarity=0.022  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|++||||||+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia   23 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIA   23 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            5788999999999999974

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.31  E-value=0.00041  Score=52.06  Aligned_cols=17  Identities=6%  Similarity=0.220  Sum_probs=15.4

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      +++.|+|++|||||||.
T Consensus         3 klIii~G~pGsGKTTla   19 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWA   19 (152)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            57899999999999985

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.00047  Score=52.62  Aligned_cols=19  Identities=16%  Similarity=0.286  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.++.|+||+||||||+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a   23 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVA   23 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            4678999999999999985

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.23  E-value=0.00043  Score=53.90  Aligned_cols=16  Identities=25%  Similarity=0.239  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|.|++|||||||+
T Consensus        24 iIgI~G~~GSGKSTla   39 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLA   39 (198)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6899999999999995

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.21  E-value=0.00056  Score=52.06  Aligned_cols=19  Identities=16%  Similarity=0.265  Sum_probs=16.8

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+.++.|.|++||||||+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva   20 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIV   20 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            4578999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.18  E-value=0.00053  Score=52.77  Aligned_cols=17  Identities=24%  Similarity=0.266  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+|++|||||||.
T Consensus         2 kii~I~G~~gSGKTTli   18 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLM   18 (165)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             cEEEEEeCCCCCHHHHH
Confidence            37899999999999994

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0005  Score=51.41  Aligned_cols=18  Identities=6%  Similarity=0.121  Sum_probs=15.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      ...+.|+||+||||||+.
T Consensus         2 ~k~I~l~G~~GsGKSTva   19 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIG   19 (169)
T ss_dssp             CCCEEEECCTTSCHHHHH
T ss_pred             CCeEEEECCCCCCHHHHH
Confidence            345788999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.07  E-value=0.00062  Score=53.57  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ||.+++|+||.||||||+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a   23 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQC   23 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            6779999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.05  E-value=0.00074  Score=51.28  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=15.3

Q ss_pred             CCCCcEEEEEcCCCCCccccC
Q 024989            1 MVEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         1 ~~~~e~~~i~G~sG~GKTtL~   21 (259)
                      |+-+.++ |+||+||||||+.
T Consensus         2 m~~~~I~-i~G~pGsGKTTia   21 (173)
T d1rkba_           2 MLLPNIL-LTGTPGVGKTTLG   21 (173)
T ss_dssp             CCCCCEE-EECSTTSSHHHHH
T ss_pred             CCCCEEE-EECCCCCCHHHHH
Confidence            4444444 9999999999974

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.00071  Score=54.64  Aligned_cols=19  Identities=16%  Similarity=0.107  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .|.++.|+||||+|||||.
T Consensus         1 ~G~livi~GPSG~GK~tl~   19 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLI   19 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            3789999999999999984

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.83  E-value=0.001  Score=50.72  Aligned_cols=19  Identities=11%  Similarity=0.155  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-.+.|+||+||||||+.
T Consensus         4 k~~~I~i~G~~GsGKTT~~   22 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMA   22 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHH
Confidence            4556999999999999985

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.79  E-value=0.00097  Score=50.38  Aligned_cols=17  Identities=6%  Similarity=0.186  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .++.|.||+||||||+.
T Consensus         3 klI~i~G~~GsGKTTva   19 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTC   19 (176)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            47899999999999984

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.78  E-value=0.044  Score=45.60  Aligned_cols=123  Identities=17%  Similarity=0.287  Sum_probs=63.5

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcccc-
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR-   81 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-   81 (259)
                      .|.++-|.||+|||||||.-.  +...-......+.|+--+..                +++    +.++.+|++.++- 
T Consensus        56 ~g~itei~G~~~sGKT~l~l~--~~~~aqk~g~~v~yiDtE~~----------------~~~----~~a~~~Gvd~d~i~  113 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALA--IVAQAQKAGGTCAFIDAEHA----------------LDP----VYARALGVNTDELL  113 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHH--HHHHHHHTTCCEEEEESSCC----------------CCH----HHHHHTTCCGGGCE
T ss_pred             CceEEEEecCCccchHHHHHH--HHHHHHhCCCEEEEEECCcc----------------CCH----HHHHHhCCCchhEE
Confidence            578999999999999998410  00000000012334322211                122    2455566654331 


Q ss_pred             CCcCCHHHHHHHHHHHHHcc--CCcEEEEeCCCCCC-------CH------HHH---HHHHHHHHHHHHhcCcEEEEEeC
Q 024989           82 MHKVSDGQRRRVQICMGLLK--PFKVLLLDEITVDL-------DV------LAR---ADLLRFLRKECEERGATIIYATH  143 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~gL-------D~------~~~---~~~~~~l~~~~~~~g~tiii~sH  143 (259)
                      +.+-.-++++ +.++..|+.  +++++|+|=-++-.       |.      ...   ...++.|..++.+.+.++|++.|
T Consensus       114 ~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQ  192 (268)
T d1xp8a1         114 VSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ  192 (268)
T ss_dssp             EECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             EEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeE
Confidence            1222234554 556666654  58899999877643       11      112   22334444555567899999999


Q ss_pred             ChhHH
Q 024989          144 IFDGL  148 (259)
Q Consensus       144 ~~~~~  148 (259)
                      -.+..
T Consensus       193 v~~~~  197 (268)
T d1xp8a1         193 VREKI  197 (268)
T ss_dssp             C----
T ss_pred             Eeecc
Confidence            77544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.67  E-value=0.00093  Score=50.93  Aligned_cols=18  Identities=22%  Similarity=0.368  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      ...++|+||+|||||||.
T Consensus         7 ~K~I~i~G~~GsGKTTla   24 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLV   24 (192)
T ss_dssp             CEEEEEECCTTSHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHH
Confidence            457899999999999995

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0011  Score=50.40  Aligned_cols=16  Identities=25%  Similarity=0.243  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .+.|+||+|+|||||.
T Consensus         3 ~v~ItG~~GtGKTtl~   18 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLI   18 (189)
T ss_dssp             CEEEESCCSSCHHHHH
T ss_pred             EEEEECCCCCcHHHHH
Confidence            5789999999999994

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0014  Score=52.23  Aligned_cols=19  Identities=26%  Similarity=0.406  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|=+++|.|++|||||||.
T Consensus         1 ~P~iIgI~G~~gSGKSTla   19 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVC   19 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            3457999999999999985

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.56  E-value=0.0021  Score=53.77  Aligned_cols=18  Identities=6%  Similarity=0.235  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+.+|+|||||||||++
T Consensus        24 ~~lnvlvG~NgsGKS~iL   41 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNII   41 (308)
T ss_dssp             SSEEEEECCTTTCSTHHH
T ss_pred             CCeEEEECCCCCcHHHHH
Confidence            458999999999999994

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.00069  Score=52.69  Aligned_cols=19  Identities=21%  Similarity=0.106  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-++.|+|++||||||+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiA   36 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVS   36 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            4668899999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0014  Score=51.47  Aligned_cols=15  Identities=20%  Similarity=0.279  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||||||||||.
T Consensus         4 Ivl~GpsG~GK~tl~   18 (186)
T d1gkya_           4 IVISGPSGTGKSTLL   18 (186)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999984

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.40  E-value=0.0018  Score=49.50  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=15.3

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|.|++||||||+.
T Consensus         2 kiI~i~G~~GsGKsT~~   18 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSS   18 (190)
T ss_dssp             CEEEEECCTTSCHHHHH
T ss_pred             CEEEEECCCCCCHHHHH
Confidence            57999999999999974

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.027  Score=46.57  Aligned_cols=18  Identities=28%  Similarity=0.361  Sum_probs=15.1

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.-+.+.||+|||||+|.
T Consensus        45 ~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEeeCCCCCCccHHH
Confidence            445789999999999985

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.002  Score=50.89  Aligned_cols=15  Identities=27%  Similarity=0.255  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||||||||||.
T Consensus         3 Ivl~GPsGsGK~tl~   17 (190)
T d1lvga_           3 VVLSGPSGAGKSTLL   17 (190)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            679999999999984

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0026  Score=49.89  Aligned_cols=17  Identities=12%  Similarity=0.258  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      ..+.|+||||+|||||.
T Consensus         4 k~ivl~Gpsg~GK~tl~   20 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIK   20 (178)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CcEEEECCCCCCHHHHH
Confidence            46899999999999994

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.99  E-value=0.0031  Score=50.99  Aligned_cols=18  Identities=22%  Similarity=0.281  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      +|.+++++||+|+||||.
T Consensus         5 ~~~vi~lvGptGvGKTTT   22 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTT   22 (207)
T ss_dssp             SSSEEEEECSTTSSHHHH
T ss_pred             CCEEEEEECCCCCCHHHH
Confidence            468999999999999997

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.95  E-value=0.0028  Score=50.99  Aligned_cols=19  Identities=21%  Similarity=0.134  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++++|.||||||||.
T Consensus        23 kg~vIwltGlsGsGKTTia   41 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLA   41 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            6789999999999999985

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.0029  Score=54.79  Aligned_cols=18  Identities=6%  Similarity=0.292  Sum_probs=16.2

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.+.+|+|||||||||+.
T Consensus        25 ~~l~~i~G~NGsGKS~il   42 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMM   42 (427)
T ss_dssp             CSEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            568999999999999983

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0031  Score=48.73  Aligned_cols=20  Identities=10%  Similarity=0.152  Sum_probs=18.2

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|+++.|.||+|||||||.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~   40 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQIC   40 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHH
Confidence            36899999999999999994

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.86  E-value=0.0031  Score=49.50  Aligned_cols=20  Identities=10%  Similarity=0.149  Sum_probs=17.8

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      -++.++.|+||.||||||+.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a   25 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQC   25 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHH
Confidence            36889999999999999984

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.66  E-value=0.0035  Score=50.27  Aligned_cols=16  Identities=31%  Similarity=0.418  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|+.|||||||.
T Consensus         2 vi~v~G~~GsGKTTLl   17 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLT   17 (244)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEcCCCCcHHHHH
Confidence            6899999999999994

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.0041  Score=49.09  Aligned_cols=16  Identities=19%  Similarity=0.254  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|.||.||||||+.
T Consensus         5 iI~I~GppGSGKgT~a   20 (225)
T d1ckea_           5 VITIDGPSGAGKGTLC   20 (225)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            8999999999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.62  E-value=0.0057  Score=49.51  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEE-EcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCc--c
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLS-YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL--S   79 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~-~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~--~   79 (259)
                      +|-+++++||+|+||||..-+  +- .. ....++++++.-+..     ...         ..++.+.+.+.++++.  .
T Consensus        11 ~p~vi~lvGptGvGKTTTiAK--LA~~~-~~~g~kV~lit~Dt~-----R~g---------a~eQL~~~a~~l~v~~~~~   73 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGK--LAYFY-KKKGFKVGLVGADVY-----RPA---------ALEQLQQLGQQIGVPVYGE   73 (211)
T ss_dssp             SSEEEEEECSCCC----HHHH--HHHHH-HHTTCCEEEEECCCS-----SHH---------HHHHHHHHHHHHTCCEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHH--HHHHH-HHCCCceEEEEeecc-----ccc---------hhHHHHHhccccCcceeec
Confidence            467899999999999997300  00 00 011235777643311     110         0133455666677652  1


Q ss_pred             ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989           80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  117 (259)
Q Consensus        80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~  117 (259)
                      ....++..=.+  =++..+...+-+++|.|  |+|..+
T Consensus        74 ~~~~~~~~~~~--~a~~~~~~~~~d~IlID--TaGr~~  107 (211)
T d1j8yf2          74 PGEKDVVGIAK--RGVEKFLSEKMEIIIVD--TAGRHG  107 (211)
T ss_dssp             TTCCCHHHHHH--HHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred             ccchhhhHHHH--HHHHHhhccCCceEEEe--cCCcCc
Confidence            22333322222  25666677899999999  888643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.61  E-value=0.0044  Score=50.29  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEE-EcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLS-YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR   81 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~-~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~   81 (259)
                      +|-+++++||+|+||||..-  ++. .. ....++++++.-+..     ...         ..++...+.+.++++....
T Consensus        10 ~p~vi~lvGptGvGKTTTiA--KLAa~~-~~~~~kV~lit~Dt~-----R~g---------A~eQL~~~a~~l~i~~~~~   72 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCG--KLAKMF-VDEGKSVVLAAADTF-----RAA---------AIEQLKIWGERVGATVISH   72 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHH--HHHHHH-HHTTCCEEEEEECTT-----CHH---------HHHHHHHHHHHHTCEEECC
T ss_pred             CCEEEEEECCCCCCHHHHHH--HHHHHH-HHCCCceEEEeeccc-----ccc---------hhHHHHHHhhhcCcccccc
Confidence            67789999999999999630  000 00 011245676643311     000         0134455566666642211


Q ss_pred             CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989           82 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  122 (259)
Q Consensus        82 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~  122 (259)
                      ...-.--.-.+-..+.+...+-+++|.|  |+|..+.....
T Consensus        73 ~~~~d~~~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~  111 (213)
T d1vmaa2          73 SEGADPAAVAFDAVAHALARNKDVVIID--TAGRLHTKKNL  111 (213)
T ss_dssp             STTCCHHHHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHcCCCEEEEe--ccccccchHHH
Confidence            1111112233445556677889999999  67765555443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.0035  Score=51.35  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=17.8

Q ss_pred             CCCcEEEEEcCCCCCcccc
Q 024989            2 VEPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL   20 (259)
                      ++|..++++|+||+|||||
T Consensus        93 l~~kt~~~~G~SGVGKSTL  111 (225)
T d1u0la2          93 LKGKISTMAGLSGVGKSSL  111 (225)
T ss_dssp             HSSSEEEEECSTTSSHHHH
T ss_pred             hcCCeEEEECCCCCCHHHH
Confidence            4789999999999999999

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.56  E-value=0.0052  Score=52.15  Aligned_cols=17  Identities=18%  Similarity=0.329  Sum_probs=12.5

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =+++|.|+|||||||+.
T Consensus         5 pIIgIaG~SGSGKTTva   21 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVK   21 (288)
T ss_dssp             CEEEEESCC---CCTHH
T ss_pred             CEEEEECCCCCcHHHHH
Confidence            38999999999999985

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.0038  Score=48.90  Aligned_cols=17  Identities=18%  Similarity=0.192  Sum_probs=15.3

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .+++|+||.||||||+.
T Consensus         9 ~iI~i~GppGSGKsT~a   25 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQC   25 (196)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            47899999999999985

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0044  Score=49.21  Aligned_cols=19  Identities=11%  Similarity=0.127  Sum_probs=17.6

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|.+++|-|+.||||||+.
T Consensus         1 rgkfIviEG~dGsGKsT~~   19 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTAR   19 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            6899999999999999974

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.51  E-value=0.0039  Score=48.67  Aligned_cols=18  Identities=11%  Similarity=0.327  Sum_probs=15.6

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |=+++|+|++||||||++
T Consensus         3 p~IIgitG~~gSGKstva   20 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVA   20 (191)
T ss_dssp             CEEEEEEECTTSCHHHHH
T ss_pred             CEEEEEECCCCCCHHHHH
Confidence            347899999999999985

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.0051  Score=49.84  Aligned_cols=105  Identities=13%  Similarity=0.077  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCc--cc
Q 024989            3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL--SW   80 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~   80 (259)
                      +|-+++++||+|+||||..-+  +-..=....++++++.-+.     ....         ..++...+.+.++++.  ..
T Consensus         8 ~p~vi~lvGptGvGKTTTiAK--LA~~~~~~g~kV~lit~Dt-----~R~g---------A~eQL~~~a~~l~v~~~~~~   71 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGK--LARQFEQQGKSVMLAAGDT-----FRAA---------AVEQLQVWGQRNNIPVIAQH   71 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHH--HHHHHHTTTCCEEEECCCT-----TCHH---------HHHHHHHHHHHTTCCEECCS
T ss_pred             CCEEEEEECCCCCCHHHHHHH--HHHHHHHCCCcEEEEeccc-----cccc---------chhhhhhhhhhcCCcccccc
Confidence            357899999999999996310  0000000113466664321     0100         0134455667777652  12


Q ss_pred             cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCC---CHHHHHHHHHHH
Q 024989           81 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL---DVLARADLLRFL  127 (259)
Q Consensus        81 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gL---D~~~~~~~~~~l  127 (259)
                      ...++..=.++  .+..+-..+-+++|.|  |+|-   |.....++.++.
T Consensus        72 ~~~d~~~~l~~--~~~~a~~~~~d~ilID--TaGr~~~d~~~~~el~~l~  117 (211)
T d2qy9a2          72 TGADSASVIFD--AIQAAKARNIDVLIAD--TAGRLQNKSHLMEELKKIV  117 (211)
T ss_dssp             TTCCHHHHHHH--HHHHHHHTTCSEEEEC--CCCCGGGHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHH--HHHHHHHcCCCEEEec--cCCCccccHHHHHHHHHHH
Confidence            22232211111  1223345788999999  6775   444444444433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.46  E-value=0.0053  Score=49.94  Aligned_cols=19  Identities=21%  Similarity=0.267  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|..+.+.||.|||||||.
T Consensus        31 ~P~~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            4667999999999999994

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.44  E-value=0.0047  Score=48.19  Aligned_cols=19  Identities=21%  Similarity=0.179  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|=+++|-|+.||||||+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~   26 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYL   26 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence            4668999999999999984

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.29  E-value=0.0041  Score=47.79  Aligned_cols=16  Identities=13%  Similarity=0.121  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .+.|+|++||||||+.
T Consensus         4 ~Iil~G~~GsGKSTia   19 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVG   19 (170)
T ss_dssp             CEEEESCTTSSHHHHH
T ss_pred             CEEEECCCCCCHHHHH
Confidence            3678999999999974

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.24  E-value=0.0042  Score=48.43  Aligned_cols=18  Identities=22%  Similarity=0.167  Sum_probs=15.2

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |=.+.|+||.||||||+.
T Consensus         3 Pm~I~i~GppGsGKsT~a   20 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQC   20 (189)
T ss_dssp             SCCEEEEESTTSSHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            345789999999999975

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.0012  Score=50.74  Aligned_cols=16  Identities=6%  Similarity=0.115  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|||||||||+.
T Consensus        26 ~tvi~G~NGsGKStil   41 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTM   41 (222)
T ss_dssp             HHHHHSCCSHHHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            5678999999999994

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.022  Score=47.09  Aligned_cols=58  Identities=21%  Similarity=0.069  Sum_probs=31.6

Q ss_pred             HHHHHHHccCCcEEEEeCCCC----------CCCHHHHHH---HHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989           93 VQICMGLLKPFKVLLLDEITV----------DLDVLARAD---LLRFLRKECEERGATIIYATHIFDGLEN  150 (259)
Q Consensus        93 v~ia~al~~~p~lllLDEPt~----------gLD~~~~~~---~~~~l~~~~~~~g~tiii~sH~~~~~~~  150 (259)
                      -.+..|-.+.|-++++||--.          +......+.   ++..+..+....+.-||.+|++.+.+..
T Consensus        91 ~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~  161 (265)
T d1r7ra3          91 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP  161 (265)
T ss_dssp             HHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSC
T ss_pred             HHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCH
Confidence            335566778899999999632          222222222   2233322233446778888998876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.12  E-value=0.0052  Score=46.93  Aligned_cols=17  Identities=12%  Similarity=0.145  Sum_probs=14.7

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      .++.|.|++||||||+.
T Consensus         2 kiivi~G~~GsGKTT~~   18 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVL   18 (194)
T ss_dssp             EEEEEEECTTSCHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            36788999999999984

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.12  E-value=0.0052  Score=46.94  Aligned_cols=15  Identities=13%  Similarity=0.220  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+|++||||||+.
T Consensus         3 I~liG~~GsGKsTi~   17 (161)
T d1viaa_           3 IVFIGFMGSGKSTLA   17 (161)
T ss_dssp             EEEECCTTSCHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            678899999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.98  E-value=0.0055  Score=46.76  Aligned_cols=15  Identities=7%  Similarity=0.166  Sum_probs=12.3

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.++|++||||||+.
T Consensus         4 IvliG~~G~GKSTig   18 (165)
T d2iyva1           4 AVLVGLPGSGKSTIG   18 (165)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            446699999999974

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.97  E-value=0.0064  Score=47.48  Aligned_cols=18  Identities=22%  Similarity=0.423  Sum_probs=15.9

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |-+++++|.+|||||||+
T Consensus         2 p~li~l~GlpgsGKSTla   19 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYIS   19 (213)
T ss_dssp             CEEEEEECCTTSSHHHHH
T ss_pred             CEEEEEECCCCCCHHHHH
Confidence            457899999999999985

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.0072  Score=48.36  Aligned_cols=19  Identities=11%  Similarity=0.169  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.+++|-|+.||||||+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~   19 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFV   19 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            4678999999999999995

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.84  E-value=0.006  Score=46.76  Aligned_cols=15  Identities=7%  Similarity=0.120  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||.||||||+.
T Consensus         3 I~i~G~pGSGKsT~a   17 (182)
T d1zina1           3 LVLMGLPGAGKGTQA   17 (182)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            679999999999974

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.007  Score=47.08  Aligned_cols=17  Identities=24%  Similarity=0.139  Sum_probs=15.1

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =++.|+||.||||||..
T Consensus         2 ~iI~i~GppGSGKsT~a   18 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQC   18 (194)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            46899999999999974

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.81  E-value=0.0052  Score=49.39  Aligned_cols=20  Identities=20%  Similarity=0.248  Sum_probs=18.1

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|.++.|.||+|||||||.
T Consensus        34 p~G~~~li~G~pGsGKT~~~   53 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLA   53 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHH
Confidence            47899999999999999984

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.0069  Score=48.10  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=18.2

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|.++.|.||+|||||||.
T Consensus        32 ~~G~~~li~G~pGsGKT~l~   51 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLC   51 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHH
T ss_pred             cCCeEEEEEcCCCCCHHHHH
Confidence            47899999999999999994

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.79  E-value=0.0083  Score=48.35  Aligned_cols=19  Identities=11%  Similarity=0.125  Sum_probs=16.1

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.+++++||+|+||||..
T Consensus         9 ~~~vi~lvGp~GvGKTTTi   27 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTA   27 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            4567899999999999973

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.75  E-value=0.007  Score=47.98  Aligned_cols=17  Identities=6%  Similarity=0.135  Sum_probs=14.5

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =+++|-||+||||||++
T Consensus         4 i~IaIdGp~GsGKgT~a   20 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVA   20 (223)
T ss_dssp             CEEEEECSSCSSHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            35788999999999974

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.0071  Score=51.73  Aligned_cols=17  Identities=12%  Similarity=0.262  Sum_probs=15.4

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =+++|.|++||||||+.
T Consensus        81 ~iIGIaG~sgSGKSTla   97 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTA   97 (308)
T ss_dssp             EEEEEEECTTSSHHHHH
T ss_pred             EEEEEeCCCCCCCcHHH
Confidence            38999999999999984

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.59  E-value=0.0071  Score=44.83  Aligned_cols=15  Identities=20%  Similarity=0.293  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+|++|||||||.
T Consensus         3 ivlvG~~~vGKSsLi   17 (160)
T d1r8sa_           3 ILMVGLDAAGKTTIL   17 (160)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999995

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.0083  Score=48.11  Aligned_cols=19  Identities=11%  Similarity=0.113  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ||.+++|-|+.||||||+.
T Consensus         2 kGk~I~iEG~DGsGKST~~   20 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQC   20 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHH
Confidence            7999999999999999974

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.48  E-value=0.0084  Score=47.57  Aligned_cols=16  Identities=19%  Similarity=0.260  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|+.||||||+.
T Consensus         4 iIgITG~igSGKStv~   19 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIA   19 (205)
T ss_dssp             EEEEECSTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6899999999999974

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.45  E-value=0.0086  Score=47.09  Aligned_cols=28  Identities=14%  Similarity=0.067  Sum_probs=21.3

Q ss_pred             CCCcEEEEEcCCCCCccccC----CceEEEEc
Q 024989            2 VEPEMVKVLGRSAFHDTALT----SSGDLSYL   29 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~----~~G~I~~~   29 (259)
                      +.|.-+.|+|+||+|||||.    ..|.-.+.
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~g~~lv~   43 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQRGHRLIA   43 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHcCCeEEe
Confidence            46788999999999999984    44554443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.0099  Score=47.52  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=18.3

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|.++.|.|++|||||+|.
T Consensus        35 p~G~~~~i~G~~GsGKT~la   54 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLS   54 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHH
Confidence            57899999999999999994

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.33  E-value=0.0084  Score=46.19  Aligned_cols=15  Identities=20%  Similarity=0.202  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||.||||||+.
T Consensus         3 I~i~G~pGsGKsT~a   17 (181)
T d2cdna1           3 VLLLGPPGAGKGTQA   17 (181)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999984

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.32  E-value=0.0082  Score=47.27  Aligned_cols=28  Identities=21%  Similarity=0.080  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCCCccccC----CceEEEEc
Q 024989            2 VEPEMVKVLGRSAFHDTALT----SSGDLSYL   29 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~----~~G~I~~~   29 (259)
                      +.|.-+.|.|+||+|||||.    ..|.-.+.
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~~~G~~lva   44 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLINKNHLFVG   44 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTTTCEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHcCCceec
Confidence            56788999999999999983    45554443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.21  E-value=0.0089  Score=44.52  Aligned_cols=40  Identities=13%  Similarity=0.056  Sum_probs=25.3

Q ss_pred             HHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989           91 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE  132 (259)
Q Consensus        91 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~  132 (259)
                      -.-.++..++.+..+-++  |+|+.+-.+..++++.|.+..+
T Consensus       127 i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~l~  166 (169)
T d1upta_         127 MANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVETLK  166 (169)
T ss_dssp             HHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHHHH
Confidence            333444555555555555  8888888888887777765543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.011  Score=47.32  Aligned_cols=19  Identities=5%  Similarity=0.095  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|-+++|.|+.||||||+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~   20 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQS   20 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHH
Confidence            6889999999999999974

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.98  E-value=0.011  Score=45.59  Aligned_cols=15  Identities=7%  Similarity=0.149  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||.||||||+.
T Consensus         3 I~i~G~pGSGKsT~a   17 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQA   17 (182)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            679999999999974

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.97  E-value=0.012  Score=47.44  Aligned_cols=19  Identities=16%  Similarity=0.235  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+..+.|.||+|+|||||.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl   46 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSII   46 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHH
Confidence            3568899999999999996

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.96  E-value=0.008  Score=45.57  Aligned_cols=16  Identities=25%  Similarity=0.210  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|++|+|||||.
T Consensus        15 kI~lvG~~~vGKTsLl   30 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLL   30 (186)
T ss_dssp             EEEEEEETTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4789999999999995

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.0096  Score=45.77  Aligned_cols=15  Identities=13%  Similarity=0.193  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|+||.||||||..
T Consensus         3 I~i~G~pGSGKsT~~   17 (179)
T d1e4va1           3 IILLGAPVAGKGTQA   17 (179)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            678999999999974

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.81  E-value=0.012  Score=49.72  Aligned_cols=18  Identities=11%  Similarity=0.119  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |=+++|.|+.|||||||.
T Consensus        27 P~iIGi~G~qGSGKSTl~   44 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTS   44 (286)
T ss_dssp             CEEEEEECCTTSSHHHHH
T ss_pred             CEEEEeECCCCCCHHHHH
Confidence            348899999999999985

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.79  E-value=0.013  Score=46.16  Aligned_cols=59  Identities=17%  Similarity=0.090  Sum_probs=37.7

Q ss_pred             cCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChh---------HHhccCCeEEEEe
Q 024989          101 KPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFD---------GLENWPSHIVYVA  159 (259)
Q Consensus       101 ~~p~lllLDEPt~gL----D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~---------~~~~~~drv~~l~  159 (259)
                      .+|+++++|=-+.-.    +..........+.+.+++.|.|+++++|...         ....++|.++.++
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence            479999999554322    4444444555555566677999999988553         2444567766654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.71  E-value=0.0047  Score=50.78  Aligned_cols=20  Identities=15%  Similarity=0.238  Sum_probs=18.2

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++|..++++|+||+|||||.
T Consensus        95 l~~~~~vl~G~SGVGKSSLi  114 (231)
T d1t9ha2          95 FQDKTTVFAGQSGVGKSSLL  114 (231)
T ss_dssp             GTTSEEEEEESHHHHHHHHH
T ss_pred             hccceEEEECCCCccHHHHH
Confidence            57889999999999999993

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.59  E-value=0.021  Score=51.10  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCCCccccC-------CceEEEEcCeeccccEEEecccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT-------SSGDLSYLGGEWRREVAFAGFEV   44 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~~~i~~v~~~~   44 (259)
                      +++.-+.++||+|||||-|+       +-=-+..++..+.. .||++.+.
T Consensus        47 i~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTe-aGYvG~DV   95 (443)
T d1g41a_          47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVGKEV   95 (443)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-----CCCCT
T ss_pred             cccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeee-cceeecch
Confidence            45677899999999999873       22234444444432 67776654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.56  E-value=0.016  Score=44.88  Aligned_cols=19  Identities=11%  Similarity=0.039  Sum_probs=15.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|=-+.|+||.||||||+.
T Consensus         2 ~~~riil~G~pGSGKsT~a   20 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQA   20 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHH
T ss_pred             CccEEEEECCCCCCHHHHH
Confidence            3445779999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.43  E-value=0.013  Score=45.64  Aligned_cols=28  Identities=18%  Similarity=0.086  Sum_probs=21.1

Q ss_pred             CCCcEEEEEcCCCCCccccC----CceEEEEc
Q 024989            2 VEPEMVKVLGRSAFHDTALT----SSGDLSYL   29 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~----~~G~I~~~   29 (259)
                      +.|.-+.|.|+||+|||||.    ..|.-.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~g~~li~   44 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKRGHRLVA   44 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHTTCEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHcCCeEEe
Confidence            46788999999999999983    44554443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.37  E-value=0.014  Score=45.77  Aligned_cols=16  Identities=6%  Similarity=0.208  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -+.|+||.||||||+.
T Consensus         8 rIiliG~PGSGKtT~a   23 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVS   23 (189)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            4679999999999974

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.26  E-value=0.016  Score=45.83  Aligned_cols=20  Identities=10%  Similarity=0.054  Sum_probs=18.0

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      ..|+++.|.|++|+|||+|.
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~   51 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIM   51 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHH
Confidence            36899999999999999993

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=0.014  Score=42.89  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++++|||||.
T Consensus         3 I~liG~~nvGKSSLl   17 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLL   17 (166)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            679999999999995

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.08  E-value=0.016  Score=44.68  Aligned_cols=16  Identities=6%  Similarity=0.100  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .+.|+||.||||||+.
T Consensus         4 rIvl~G~pGSGKtT~a   19 (180)
T d1akya1           4 RMVLIGPPGAGKGTQA   19 (180)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3678999999999984

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.04  E-value=0.017  Score=44.92  Aligned_cols=16  Identities=19%  Similarity=0.204  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++++|||||.
T Consensus         5 ~V~lvG~~n~GKTSLl   20 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLL   20 (209)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6899999999999995

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.99  E-value=0.016  Score=43.58  Aligned_cols=15  Identities=20%  Similarity=0.253  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|||||||.
T Consensus         5 i~ivG~~~~GKTsLi   19 (165)
T d1ksha_           5 LLMLGLDNAGKTTIL   19 (165)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.89  E-value=0.018  Score=44.94  Aligned_cols=16  Identities=13%  Similarity=0.264  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|.|+.||||||+.
T Consensus         2 lI~ieG~dGsGKST~~   17 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLV   17 (208)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5889999999999984

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.87  E-value=0.017  Score=44.40  Aligned_cols=15  Identities=20%  Similarity=0.330  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      |+|+|++++|||||.
T Consensus         4 VaiiG~~nvGKSSLi   18 (185)
T d1lnza2           4 VGLVGFPSVGKSTLL   18 (185)
T ss_dssp             EEEESSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            799999999999995

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.80  E-value=0.021  Score=45.91  Aligned_cols=17  Identities=12%  Similarity=0.186  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      -.+.|.||+|+||||+.
T Consensus        53 ~~lll~GPpG~GKTt~a   69 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAA   69 (253)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            46899999999999985

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.70  E-value=0.018  Score=45.90  Aligned_cols=51  Identities=24%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-hccCCeE
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL-ENWPSHI  155 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~-~~~~drv  155 (259)
                      ++.++++||- ..+-......++..+.+..  ....+|++++..+.+ ..+.+|.
T Consensus       109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~--~~~~~i~~~n~~~~i~~~l~sR~  160 (231)
T d1iqpa2         109 SFKIIFLDEA-DALTQDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQSRC  160 (231)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHHTE
T ss_pred             CceEEeehhh-hhcchhHHHHHhhhcccCC--cceEEEeccCChhhchHhHhCcc
Confidence            6679999994 4555566666777776532  345677788776544 2334444

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.024  Score=44.95  Aligned_cols=16  Identities=13%  Similarity=0.233  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|..||||||..
T Consensus         5 iIgitG~igSGKStv~   20 (208)
T d1vhta_           5 IVALTGGIGSGKSTVA   20 (208)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECCCcCCHHHHH
Confidence            6899999999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.52  E-value=0.022  Score=43.21  Aligned_cols=16  Identities=25%  Similarity=0.420  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+.|+|||||.
T Consensus         2 ~V~liG~~n~GKSsLi   17 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLF   17 (171)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999995

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.38  E-value=0.021  Score=43.11  Aligned_cols=15  Identities=13%  Similarity=0.208  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|++|+|||||.
T Consensus         5 i~i~G~~~~GKTsLl   19 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFV   19 (164)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999995

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.32  E-value=0.021  Score=45.71  Aligned_cols=16  Identities=25%  Similarity=0.335  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .+.+.||.|+||||+.
T Consensus        37 ~~L~~GPpGtGKT~lA   52 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLA   52 (238)
T ss_dssp             CEEEESSTTSSHHHHH
T ss_pred             eEEEECCCCCcHHHHH
Confidence            3679999999999985

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.23  E-value=0.019  Score=44.60  Aligned_cols=16  Identities=19%  Similarity=0.370  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++|+|||||.
T Consensus        25 ~I~lvG~~n~GKSTLi   40 (195)
T d1svia_          25 EIALAGRSNVGKSSFI   40 (195)
T ss_dssp             EEEEEEBTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3899999999999994

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.22  E-value=0.024  Score=43.34  Aligned_cols=16  Identities=19%  Similarity=0.478  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|++|+|||||.
T Consensus         7 ~I~lvG~~~~GKSSLi   22 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLL   22 (178)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6999999999999995

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.20  E-value=0.02  Score=43.21  Aligned_cols=15  Identities=20%  Similarity=0.273  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|||||||.
T Consensus        18 I~vvG~~~~GKSsLi   32 (177)
T d1zj6a1          18 VIIVGLDNAGKTTIL   32 (177)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.15  E-value=0.022  Score=45.24  Aligned_cols=15  Identities=13%  Similarity=0.109  Sum_probs=13.5

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.+.||+|+||||+.
T Consensus        36 lll~Gp~G~GKTtl~   50 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTI   50 (237)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCChHHHH
Confidence            679999999999984

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.98  E-value=0.024  Score=43.03  Aligned_cols=15  Identities=20%  Similarity=0.459  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||||.
T Consensus         8 i~vvG~~~vGKTsLi   22 (169)
T d3raba_           8 ILIIGNSSVGKTSFL   22 (169)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=0.025  Score=42.94  Aligned_cols=15  Identities=40%  Similarity=0.525  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         5 i~~vG~~~vGKSsLi   19 (175)
T d1ky3a_           5 VIILGDSGVGKTSLM   19 (175)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.94  E-value=0.026  Score=47.78  Aligned_cols=19  Identities=16%  Similarity=0.434  Sum_probs=15.8

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      ++.-+.++||+|||||.|+
T Consensus        48 ~~~~iLl~GPpG~GKT~lA   66 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIA   66 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            4556778999999999985

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.027  Score=45.07  Aligned_cols=18  Identities=17%  Similarity=0.359  Sum_probs=16.7

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      |.+++|-|+-||||||+.
T Consensus         2 pk~IviEG~~GsGKST~~   19 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFV   19 (241)
T ss_dssp             CEEEEEEECTTSSHHHHH
T ss_pred             CeEEEEECCCCCcHHHHH
Confidence            689999999999999984

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.82  E-value=0.025  Score=42.59  Aligned_cols=15  Identities=20%  Similarity=0.419  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|++|+|||||.
T Consensus         5 v~liG~~~vGKSsLi   19 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMI   19 (164)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.80  E-value=0.025  Score=43.26  Aligned_cols=15  Identities=27%  Similarity=0.499  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus        11 V~iiG~~~~GKSTLi   25 (186)
T d1mkya2          11 VAIVGRPNVGKSTLF   25 (186)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            799999999999995

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.027  Score=42.62  Aligned_cols=16  Identities=19%  Similarity=0.513  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      +++|+|.+++|||||.
T Consensus         7 ~I~iiG~~nvGKSSLi   22 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLL   22 (179)
T ss_dssp             EEEEECSSSSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5789999999999995

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.69  E-value=0.022  Score=48.76  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=18.5

Q ss_pred             CCcEEEEEcCCCCCccccCCc
Q 024989            3 EPEMVKVLGRSAFHDTALTSS   23 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~~~   23 (259)
                      +|++....|.||.|||||...
T Consensus        13 ~~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTCB
T ss_pred             CCCEEEEEccCCCCccccccC
Confidence            588999999999999999643

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.62  E-value=0.023  Score=43.27  Aligned_cols=16  Identities=25%  Similarity=0.360  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++++|||||.
T Consensus         2 ~I~lvG~~nvGKSsLi   17 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLI   17 (184)
T ss_dssp             EEEEEEBTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999995

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.028  Score=42.42  Aligned_cols=15  Identities=27%  Similarity=0.530  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         7 v~liG~~~vGKTsLl   21 (167)
T d1xtqa1           7 IAILGYRSVGKSSLT   21 (167)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999994

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.03  Score=42.27  Aligned_cols=15  Identities=27%  Similarity=0.470  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         5 i~viG~~~vGKTsLi   19 (171)
T d2erxa1           5 VAVFGAGGVGKSSLV   19 (171)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999994

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.03  Score=42.59  Aligned_cols=15  Identities=13%  Similarity=0.332  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         6 ivvvG~~~vGKTsli   20 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLL   20 (173)
T ss_dssp             EEEESSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            679999999999995

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.24  E-value=0.022  Score=43.54  Aligned_cols=15  Identities=20%  Similarity=0.288  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++++|||||.
T Consensus         4 VaivG~~nvGKSTLi   18 (180)
T d1udxa2           4 VGLVGYPNAGKSSLL   18 (180)
T ss_dssp             EEEECCGGGCHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            899999999999994

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.029  Score=41.75  Aligned_cols=16  Identities=25%  Similarity=0.328  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.++|||||.
T Consensus         3 kI~lvG~~nvGKSsLi   18 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLL   18 (161)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3789999999999995

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.031  Score=42.55  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus         7 i~vvG~~~vGKTsLi   21 (175)
T d2f9la1           7 VVLIGDSGVGKSNLL   21 (175)
T ss_dssp             EEEESSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.031  Score=42.38  Aligned_cols=15  Identities=33%  Similarity=0.477  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         8 i~lvG~~~vGKTsLi   22 (171)
T d2erya1           8 LVVVGGGGVGKSALT   22 (171)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999994

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.98  E-value=0.033  Score=43.56  Aligned_cols=16  Identities=25%  Similarity=0.129  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|+|||||.
T Consensus         2 ~V~ivG~~~~GKTsLl   17 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLF   17 (207)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999995

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.031  Score=42.62  Aligned_cols=15  Identities=27%  Similarity=0.403  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         5 ivvvG~~~vGKTsLi   19 (177)
T d1kmqa_           5 LVIVGDGACGKTCLL   19 (177)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            678999999999995

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.031  Score=42.13  Aligned_cols=15  Identities=33%  Similarity=0.485  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||||.
T Consensus         6 i~viG~~~vGKTsli   20 (166)
T d1ctqa_           6 LVVVGAGGVGKSALT   20 (166)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            799999999999995

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.035  Score=42.62  Aligned_cols=15  Identities=27%  Similarity=0.352  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus         8 i~ivG~~~vGKTsLi   22 (186)
T d2f7sa1           8 LLALGDSGVGKTTFL   22 (186)
T ss_dssp             EEEESCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.77  E-value=0.032  Score=41.96  Aligned_cols=15  Identities=20%  Similarity=0.412  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||||.
T Consensus         5 i~vvG~~~vGKTSli   19 (166)
T d1g16a_           5 ILLIGDSGVGKSCLL   19 (166)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999994

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.77  E-value=0.043  Score=43.81  Aligned_cols=18  Identities=22%  Similarity=0.183  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +..+.|.||.|+||||+.
T Consensus        43 ~~~lll~GppGtGKT~l~   60 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTL   60 (276)
T ss_dssp             CCEEEEECCTTSSHHHHH
T ss_pred             CCceEEECCCCCCHHHHH
Confidence            457899999999999984

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.037  Score=41.66  Aligned_cols=15  Identities=47%  Similarity=0.578  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         6 i~lvG~~~vGKTsLi   20 (167)
T d1kaoa_           6 VVVLGSGGVGKSALT   20 (167)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.038  Score=41.83  Aligned_cols=15  Identities=27%  Similarity=0.589  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|++|+|||+|.
T Consensus         5 i~lvG~~~vGKTsli   19 (168)
T d2atva1           5 LAIFGRAGVGKSALV   19 (168)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999995

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.039  Score=47.27  Aligned_cols=17  Identities=12%  Similarity=0.104  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =.++|+||.|+|||||.
T Consensus        55 ~~IgitG~pGaGKSTLi   71 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFL   71 (327)
T ss_dssp             EEEEEEECTTSCHHHHH
T ss_pred             eEEEeeCCCCCCHHHHH
Confidence            36899999999999994

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.48  E-value=0.039  Score=41.34  Aligned_cols=15  Identities=40%  Similarity=0.536  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|..|+|||||.
T Consensus         5 v~liG~~~vGKTsLl   19 (165)
T d1z06a1           5 IIVIGDSNVGKTCLT   19 (165)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.039  Score=41.56  Aligned_cols=15  Identities=33%  Similarity=0.494  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         6 ivlvG~~~vGKTsLi   20 (167)
T d1z08a1           6 VVLLGEGCVGKTSLV   20 (167)
T ss_dssp             EEEECCTTSCHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.035  Score=42.02  Aligned_cols=15  Identities=20%  Similarity=0.461  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++|+|||||.
T Consensus         8 i~lvG~~~vGKTsLi   22 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLV   22 (171)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999994

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.42  E-value=0.04  Score=44.06  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=14.8

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      ..+.+.||.|+||||+.
T Consensus        36 ~~~Ll~GPpG~GKTtla   52 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLA   52 (239)
T ss_dssp             CCEEEECCTTSCHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            35779999999999985

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.40  E-value=0.036  Score=41.92  Aligned_cols=15  Identities=27%  Similarity=0.313  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|+.|+|||||.
T Consensus        19 I~vvG~~~vGKSsLi   33 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLL   33 (176)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.34  E-value=0.04  Score=42.23  Aligned_cols=15  Identities=40%  Similarity=0.525  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|||||||.
T Consensus         5 v~vvG~~~vGKSSLi   19 (184)
T d1vg8a_           5 VIILGDSGVGKTSLM   19 (184)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.038  Score=41.69  Aligned_cols=16  Identities=25%  Similarity=0.210  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|++++|||||.
T Consensus        18 ~I~lvG~~NvGKSSL~   33 (188)
T d1puia_          18 EVAFAGRSNAGKSSAL   33 (188)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4899999999999995

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.25  E-value=0.063  Score=40.66  Aligned_cols=16  Identities=19%  Similarity=0.277  Sum_probs=8.4

Q ss_pred             EEEEcCCCCCccccCC
Q 024989            7 VKVLGRSAFHDTALTS   22 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~~   22 (259)
                      ++|+|..|+|||||..
T Consensus         9 i~vvG~~~vGKTsLi~   24 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLF   24 (173)
T ss_dssp             EEEECCCCC-------
T ss_pred             EEEECCCCcCHHHHHH
Confidence            6899999999999963

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.24  E-value=0.031  Score=42.71  Aligned_cols=15  Identities=20%  Similarity=0.332  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|++|+|||||.
T Consensus        20 I~lvG~~~vGKTsLi   34 (182)
T d1moza_          20 ILILGLDGAGKTTIL   34 (182)
T ss_dssp             EEEEEETTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999994

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.23  E-value=0.04  Score=43.69  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      +.+++|+||.- ++....+..+...+.+..  ....+++++++.+.+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~--~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELYS--NSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTT--TTEEEEEEESCGGGS
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhccccc--cceeeeeccCchhhh
Confidence            36799999864 566667777777776532  356778888887654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.11  E-value=0.041  Score=43.99  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  147 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~  147 (259)
                      +.+++|+||.-. |.......+.+.+.+..  ....+|++|++.+.
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~~  173 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP  173 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred             CceEEEeccccc-cccccchhhhccccccc--ccccceeeeccccc
Confidence            567999999854 88888888888876542  34668999988753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.04  E-value=0.042  Score=44.91  Aligned_cols=16  Identities=31%  Similarity=0.210  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -+.+.||.|||||+|.
T Consensus        42 ~vLL~GppGtGKT~la   57 (246)
T d1d2na_          42 SVLLEGPPHSGKTALA   57 (246)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            4789999999999985

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.03  E-value=0.043  Score=41.31  Aligned_cols=15  Identities=20%  Similarity=0.417  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         7 i~lvG~~~vGKTsli   21 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIM   21 (167)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.044  Score=41.57  Aligned_cols=15  Identities=27%  Similarity=0.434  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|++|+|||||.
T Consensus         9 I~vvG~~~vGKSSli   23 (174)
T d1wmsa_           9 VILLGDGGVGKSSLM   23 (174)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            889999999999995

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.046  Score=41.35  Aligned_cols=15  Identities=33%  Similarity=0.483  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         4 i~lvG~~~vGKTsLi   18 (168)
T d2gjsa1           4 VLLLGAPGVGKSALA   18 (168)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.045  Score=41.36  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|..|+|||||.
T Consensus         9 i~vvG~~~vGKTsLi   23 (170)
T d1r2qa_           9 LVLLGESAVGKSSLV   23 (170)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.042  Score=41.14  Aligned_cols=15  Identities=27%  Similarity=0.417  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|..|+|||||.
T Consensus         3 v~vvG~~~vGKTsLi   17 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLI   17 (164)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.032  Score=47.48  Aligned_cols=19  Identities=21%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++..+.|.||.|||||.
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            5889999999999999995

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.045  Score=41.15  Aligned_cols=15  Identities=13%  Similarity=0.268  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         7 ivlvG~~~vGKTsli   21 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLL   21 (166)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.043  Score=41.69  Aligned_cols=15  Identities=33%  Similarity=0.477  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|..|+|||||.
T Consensus         9 v~lvG~~~vGKTsLi   23 (173)
T d2fn4a1           9 LVVVGGGGVGKSALT   23 (173)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.67  E-value=0.047  Score=41.19  Aligned_cols=15  Identities=20%  Similarity=0.468  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|..|+|||||.
T Consensus         6 i~vvG~~~vGKTsLi   20 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIV   20 (170)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.047  Score=41.82  Aligned_cols=15  Identities=33%  Similarity=0.390  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus         8 ivviG~~~vGKTsli   22 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLL   22 (183)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.58  E-value=0.047  Score=41.90  Aligned_cols=14  Identities=14%  Similarity=0.325  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCcccc
Q 024989            7 VKVLGRSAFHDTAL   20 (259)
Q Consensus         7 ~~i~G~sG~GKTtL   20 (259)
                      +.|+|.+|+|||||
T Consensus         5 ivllG~~~vGKTsl   18 (200)
T d1zcba2           5 ILLLGAGESGKSTF   18 (200)
T ss_dssp             EEEECSTTSSHHHH
T ss_pred             EEEECCCCCCHHHH
Confidence            68999999999999

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.046  Score=41.48  Aligned_cols=15  Identities=13%  Similarity=0.288  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|++|+|||||.
T Consensus         6 i~vvG~~~vGKTsli   20 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFV   20 (170)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999994

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.51  E-value=0.045  Score=42.46  Aligned_cols=15  Identities=20%  Similarity=0.397  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus         9 ivvvG~~~vGKTsli   23 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLL   23 (194)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999995

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.68  E-value=0.065  Score=45.68  Aligned_cols=17  Identities=12%  Similarity=0.093  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCCccccC
Q 024989            5 EMVKVLGRSAFHDTALT   21 (259)
Q Consensus         5 e~~~i~G~sG~GKTtL~   21 (259)
                      =.++|.||-|+|||||.
T Consensus        52 ~~igitG~pGaGKSTli   68 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTI   68 (323)
T ss_dssp             EEEEEECCTTSCHHHHH
T ss_pred             eEEeeeCCCCCCHHHHH
Confidence            35899999999999995

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.67  E-value=0.065  Score=42.77  Aligned_cols=24  Identities=13%  Similarity=0.156  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCccccC----C-ceEEEEc
Q 024989            6 MVKVLGRSAFHDTALT----S-SGDLSYL   29 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~----~-~G~I~~~   29 (259)
                      +++|+|+-||||||..    . -|-..++
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~~~i~   31 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQ   31 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCeEEc
Confidence            6899999999999985    2 2655554

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.059  Score=40.50  Aligned_cols=15  Identities=40%  Similarity=0.543  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||+|.
T Consensus         6 ivvvG~~~vGKTsli   20 (167)
T d1c1ya_           6 LVVLGSGGVGKSALT   20 (167)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            689999999999995

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.58  E-value=0.061  Score=40.68  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.++|.+|+|||||.
T Consensus         7 i~lvG~~~vGKTsll   21 (169)
T d1x1ra1           7 LVVVGDGGVGKSALT   21 (169)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            678999999999994

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.061  Score=40.56  Aligned_cols=15  Identities=33%  Similarity=0.434  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|+.|+|||||.
T Consensus         9 i~vvG~~~vGKTsli   23 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLL   23 (170)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999994

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.063  Score=40.72  Aligned_cols=15  Identities=20%  Similarity=0.443  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||||.
T Consensus         6 v~lvG~~~vGKTsLi   20 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLA   20 (172)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999996

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=87.41  E-value=0.049  Score=41.27  Aligned_cols=15  Identities=27%  Similarity=0.341  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.++|++|+|||||.
T Consensus        15 IvlvG~~~vGKTSli   29 (173)
T d1e0sa_          15 ILMLGLDAAGKTTIL   29 (173)
T ss_dssp             EEEEEETTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999994

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.39  E-value=0.058  Score=40.78  Aligned_cols=15  Identities=20%  Similarity=0.319  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|..|+|||||.
T Consensus         8 I~lvG~~~vGKTsll   22 (174)
T d2bmea1           8 FLVIGNAGTGKSCLL   22 (174)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999985

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.29  E-value=0.059  Score=41.27  Aligned_cols=15  Identities=40%  Similarity=0.463  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.++|.+|+|||+|.
T Consensus         5 ivliG~~~vGKTsli   19 (179)
T d1m7ba_           5 IVVVGDSQCGKTALL   19 (179)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            679999999999994

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.26  E-value=0.064  Score=42.70  Aligned_cols=14  Identities=14%  Similarity=0.313  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCcccc
Q 024989            7 VKVLGRSAFHDTAL   20 (259)
Q Consensus         7 ~~i~G~sG~GKTtL   20 (259)
                      +.|+|.+|+|||||
T Consensus         9 illlG~~~vGKTsl   22 (221)
T d1azta2           9 LLLLGAGESGKSTI   22 (221)
T ss_dssp             EEEECSTTSSHHHH
T ss_pred             EEEECCCCCCHHHH
Confidence            68999999999999

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.063  Score=41.23  Aligned_cols=15  Identities=33%  Similarity=0.390  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.+|+|||||.
T Consensus        12 i~lvG~~~vGKTsLi   26 (185)
T d2atxa1          12 CVVVGDGAVGKTCLL   26 (185)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.90  E-value=0.067  Score=42.20  Aligned_cols=44  Identities=20%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      +.+++++||. ..+....+..++..|.+..  ...-++++|++...+
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~~i  142 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYT--KNTRFCVLANYAHKL  142 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGS
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcc--cceeeccccCcHHHh
Confidence            3469999996 5788888888888887653  355667777765543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.75  E-value=0.033  Score=41.35  Aligned_cols=15  Identities=13%  Similarity=0.406  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|++++|||||.
T Consensus         3 I~liG~~n~GKSSLi   17 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLL   17 (160)
T ss_dssp             EEEECCHHHHTCHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.68  E-value=0.075  Score=40.69  Aligned_cols=15  Identities=27%  Similarity=0.383  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||||.
T Consensus         8 i~vlG~~~vGKTsLi   22 (175)
T d2bmja1           8 LGVLGDARSGKSSLI   22 (175)
T ss_dssp             EEEECCTTTTHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999995

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.63  E-value=0.073  Score=40.43  Aligned_cols=15  Identities=20%  Similarity=0.470  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|..|+|||||.
T Consensus        10 i~vvG~~~vGKTsli   24 (177)
T d1x3sa1          10 ILIIGESGVGKSSLL   24 (177)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999995

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.58  E-value=0.069  Score=41.18  Aligned_cols=15  Identities=33%  Similarity=0.390  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++++|.+|+|||+|.
T Consensus         6 vvllG~~~vGKTSli   20 (191)
T d2ngra_           6 CVVVGDGAVGKTCLL   20 (191)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999994

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=86.56  E-value=0.074  Score=40.14  Aligned_cols=15  Identities=33%  Similarity=0.481  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|..|+|||||.
T Consensus         7 ivlvG~~~vGKTsli   21 (168)
T d1u8za_           7 VIMVGSGGVGKSALT   21 (168)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCcCHHHHH
Confidence            689999999999994

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=86.49  E-value=0.089  Score=40.27  Aligned_cols=19  Identities=32%  Similarity=0.253  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|.++.+.|+=|||||||.
T Consensus        32 ~g~ii~L~G~LGaGKTtfv   50 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLT   50 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHH
T ss_pred             CCeEEEEecCCCccHHHHH
Confidence            5789999999999999984

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.37  E-value=0.092  Score=42.84  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=15.4

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      +.-+.+.||.|||||+|.
T Consensus        42 ~~giLl~GppGtGKT~la   59 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLA   59 (247)
T ss_dssp             CSEEEEECCTTSSHHHHH
T ss_pred             CceEEEecCCCCChhHHH
Confidence            345889999999999985

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.57  E-value=0.089  Score=39.86  Aligned_cols=14  Identities=14%  Similarity=0.313  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCcccc
Q 024989            7 VKVLGRSAFHDTAL   20 (259)
Q Consensus         7 ~~i~G~sG~GKTtL   20 (259)
                      +.++|..|+|||||
T Consensus         5 ivllG~~~vGKTsl   18 (195)
T d1svsa1           5 LLLLGAGESGKSTI   18 (195)
T ss_dssp             EEEECSTTSSHHHH
T ss_pred             EEEECCCCCCHHHH
Confidence            68999999999999

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.51  E-value=0.061  Score=43.13  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=12.5

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      +.|.||.|+||||+.
T Consensus        49 l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLA   63 (287)
T ss_dssp             EECTTCCSSSHHHHH
T ss_pred             EEeECCCCCCHHHHH
Confidence            455699999999984

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=85.50  E-value=0.079  Score=45.10  Aligned_cols=44  Identities=16%  Similarity=0.048  Sum_probs=27.6

Q ss_pred             HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChh
Q 024989           94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA-TIIYATHIFD  146 (259)
Q Consensus        94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~-tiii~sH~~~  146 (259)
                      .+-.+|=++|+.+++.|--.   +..    +.+++.. . .|. .++.+.|=-+
T Consensus       227 ll~~~lR~~pd~iivgEiR~---~ea----~~~l~a~-~-tGh~g~~tT~Ha~s  271 (323)
T d1g6oa_         227 CLKSCLRMRPDRIILGELRS---SEA----YDFYNVL-C-SGHKGTLTTLHAGS  271 (323)
T ss_dssp             HHHHHTTSCCSEEEESCCCS---THH----HHHHHHH-H-TTCSCEEEEECCSS
T ss_pred             HHHHHhccCCCcccCCccCc---hhH----HHHHHHH-H-hcCCcEEEEECCCC
Confidence            35567888999999999863   332    3444433 2 353 4777777533

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.47  E-value=0.17  Score=35.82  Aligned_cols=18  Identities=6%  Similarity=-0.258  Sum_probs=16.1

Q ss_pred             CCcEEEEEcCCCCCcccc
Q 024989            3 EPEMVKVLGRSAFHDTAL   20 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL   20 (259)
                      +|+.+.|..|.|||||..
T Consensus         6 ~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TTCEEEECCCTTSSTTTT
T ss_pred             cCCcEEEEcCCCCChhHH
Confidence            688899999999999975

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.30  E-value=0.11  Score=45.51  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=31.6

Q ss_pred             HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989           92 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus        92 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      --+|..+|=++|+++++.|..   |+.+....+    +.+ ..|.-|+-+-|=-
T Consensus       217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa-~tGhlV~tTlHa~  262 (401)
T d1p9ra_         217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QAS-LTGHLVMSTLHTN  262 (401)
T ss_dssp             HHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECCS
T ss_pred             HHHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHH-hcCCeEEEEeccC
Confidence            344667788899999999987   454444332    333 3588888888854

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=85.26  E-value=0.087  Score=43.68  Aligned_cols=16  Identities=31%  Similarity=0.432  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|+.|+|||||.
T Consensus         4 Nv~iiGh~~~GKTtL~   19 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLT   19 (267)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEEcCCCCcHHHHH
Confidence            4799999999999994

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.23  E-value=0.12  Score=42.20  Aligned_cols=55  Identities=11%  Similarity=0.090  Sum_probs=30.8

Q ss_pred             HHHHccCCcEEEEeCCCCCCC----------HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989           96 CMGLLKPFKVLLLDEITVDLD----------VLARADLLRFLRKECEERGATIIYATHIFDGLEN  150 (259)
Q Consensus        96 a~al~~~p~lllLDEPt~gLD----------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~  150 (259)
                      ..|-.+.|.+|++||-=.=+.          ......+...+.......+.-||.+|++.+.+..
T Consensus        91 ~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~  155 (258)
T d1e32a2          91 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP  155 (258)
T ss_dssp             HHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCG
T ss_pred             HHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccch
Confidence            344456899999999744332          2222233333333222335567779988876543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.17  E-value=0.12  Score=43.47  Aligned_cols=20  Identities=10%  Similarity=-0.065  Sum_probs=18.6

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      .+|+-.+|+|++|+|||||.
T Consensus        41 grGQr~~I~g~~g~GKT~l~   60 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLL   60 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHH
Confidence            58999999999999999994

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.93  E-value=0.12  Score=43.93  Aligned_cols=19  Identities=21%  Similarity=0.307  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCCCCccccC
Q 024989            3 EPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         3 ~~e~~~i~G~sG~GKTtL~   21 (259)
                      +|++....|.||.|||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999993

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.89  E-value=0.093  Score=42.91  Aligned_cols=16  Identities=13%  Similarity=0.362  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .++|+|.+|+|||||.
T Consensus        34 ~I~LvG~tg~GKSSli   49 (257)
T d1h65a_          34 TILVMGKGGVGKSSTV   49 (257)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCcHHHHH
Confidence            5789999999999994

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.64  E-value=0.1  Score=43.55  Aligned_cols=16  Identities=13%  Similarity=0.040  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+.|||||||.
T Consensus         8 ni~i~gh~~~GKTtL~   23 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTT   23 (276)
T ss_dssp             EEEEEECTTSCHHHHH
T ss_pred             EEEEEeCCCCCHHHHH
Confidence            4899999999999994

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.28  E-value=0.12  Score=42.63  Aligned_cols=18  Identities=11%  Similarity=0.200  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCccccC
Q 024989            4 PEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         4 ~e~~~i~G~sG~GKTtL~   21 (259)
                      .-+++|.|.-|+|||||+
T Consensus        44 ~~~v~I~GmgGiGKTtLA   61 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIA   61 (277)
T ss_dssp             SEEEEEECSTTSSHHHHH
T ss_pred             ceEEEEECCCCCCHHHHH
Confidence            358999999999999996

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.20  E-value=0.1  Score=39.61  Aligned_cols=14  Identities=14%  Similarity=0.304  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCcccc
Q 024989            7 VKVLGRSAFHDTAL   20 (259)
Q Consensus         7 ~~i~G~sG~GKTtL   20 (259)
                      +.++|..|+|||||
T Consensus         5 iv~lG~~~vGKTsl   18 (200)
T d2bcjq2           5 LLLLGTGESGKSTF   18 (200)
T ss_dssp             EEEEESTTSSHHHH
T ss_pred             EEEECCCCCCHHHH
Confidence            68999999999999

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.38  E-value=0.17  Score=40.39  Aligned_cols=16  Identities=19%  Similarity=0.094  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      ++.|.|.=|||||||.
T Consensus         5 v~iitGFLGaGKTTll   20 (222)
T d1nija1           5 VTLLTGFLGAGKTTLL   20 (222)
T ss_dssp             EEEEEESSSSSCHHHH
T ss_pred             EEEEeeCCCCCHHHHH
Confidence            6789999999999984

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.20  E-value=0.16  Score=40.38  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989          102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  148 (259)
Q Consensus       102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~  148 (259)
                      +--++++| ...|+.+.... +++.+.+    .+.-+|++-.-++.+
T Consensus        95 D~~ilVvd-a~~g~~~~~~~-~~~~~~~----~~~p~iivlNK~D~~  135 (227)
T d1g7sa4          95 DLAILIVD-INEGFKPQTQE-ALNILRM----YRTPFVVAANKIDRI  135 (227)
T ss_dssp             SEEEEEEE-TTTCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGS
T ss_pred             ceEEEEEe-cccCcccchhH-HHHHhhc----CCCeEEEEEECccCC
Confidence            55588888 77899987653 4555543    355666666666644

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.16  E-value=0.15  Score=40.52  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             ccCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989          100 LKPFKVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATHIF  145 (259)
Q Consensus       100 ~~~p~lllLDEPt~g-LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~  145 (259)
                      ....++|++|+--.= =++.....++.++.... +.|+.+|++|...
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~  140 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRH  140 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCc
Confidence            458999999987432 34677788999988765 4688888888754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=82.10  E-value=0.14  Score=38.93  Aligned_cols=16  Identities=19%  Similarity=0.341  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      -++|+|+..+|||||.
T Consensus         7 nIaiiG~~naGKSTL~   22 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLS   22 (179)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            3899999999999995

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.00  E-value=0.18  Score=39.59  Aligned_cols=15  Identities=33%  Similarity=0.437  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCccccC
Q 024989            7 VKVLGRSAFHDTALT   21 (259)
Q Consensus         7 ~~i~G~sG~GKTtL~   21 (259)
                      ++|+|.-++|||||.
T Consensus         6 i~iiGhvd~GKSTL~   20 (204)
T d2c78a3           6 VGTIGHVDHGKTTLT   20 (204)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEeCCCCcHHHHH
Confidence            899999999999995

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.75  E-value=0.17  Score=42.60  Aligned_cols=16  Identities=19%  Similarity=0.194  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCccccC
Q 024989            6 MVKVLGRSAFHDTALT   21 (259)
Q Consensus         6 ~~~i~G~sG~GKTtL~   21 (259)
                      .+.++||+|+|||.|.
T Consensus        54 ~~lf~Gp~GvGKT~la   69 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVT   69 (315)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCcchhHHHH
Confidence            6789999999999985

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.04  E-value=0.2  Score=41.39  Aligned_cols=20  Identities=10%  Similarity=0.255  Sum_probs=17.9

Q ss_pred             CCCcEEEEEcCCCCCccccC
Q 024989            2 VEPEMVKVLGRSAFHDTALT   21 (259)
Q Consensus         2 ~~~e~~~i~G~sG~GKTtL~   21 (259)
                      ..|.++-|.||+|||||||.
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~   77 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVA   77 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHH
Confidence            36899999999999999994