Citrus Sinensis ID: 025004

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSSSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQVHQRQI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHEEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mssssdaaarsdshapllrprdpsvspnaarPATLALLLGRatgrghgpsmLVRETAARELEERradwgyskpvvALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRrntrrvrddemggedfrdvnndsedeeedgivyrtstrtsFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQVHQRQI
Flexible Loop (DISEMBL)
mssssdaaarsdshapllrprdpsvspnaARPATLALLLGRatgrghgpsmLVRETAARELEerradwgyskPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMeyrrrntrrvrddemggedfrdvnndsedeeedgivyrtstrtsftkrCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQVHQRQI
Low Complexity Region (SEG)
MssssdaaarsdshaPLLRPRDPSVSPNaarpatlalllgratgrgHGPSMLVretaareleerraDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYrrrntrrvrDDEMGGEDFRdvnndsedeeedGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLavvflafdvffaifCVVlacligialccclpciiailYAVAGQVHQRQI
Disordered region (IsUnstruct)
***********************************ALLLG***********************RRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRR******************************IVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQV*****
Disordered Region (DISOPRED)
***********************************************************************KPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRR***************************************SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA*Q******
Disordered Region (DISEMBL)
***************PLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVN*********GIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA********
Disordered Region (DISPRO)
************************************************PS*************RRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNT*********************************TRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQVHQRQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q8GUU2	359	E3 ubiquitin protein liga	yes	no	0.945	0.682	0.647	2e-87
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.779	0.517	0.541	4e-50
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.764	0.485	0.504	4e-47
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.791	0.538	0.557	8e-46

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/255 (64%), Positives = 189/255 (74%), Gaps = 10/255 (3%)

Query: 2   SSSSDAAARSDSHAPLLRPRDPSVSPNA---ARPATLALLLGRATGRGHGPSMLVRETAA 58
           S SSD+ A  D HAPLLRPR      ++   ARP  LA+LLGR TG    PSMLVRETAA
Sbjct: 3   SYSSDSTAARDQHAPLLRPRHDGSFSSSSSSARPTALAVLLGRITGH-RAPSMLVRETAA 61

Query: 59  RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
           R LEERR DWGYSKPVVA DI+WN+A V+ SA ML+ T+ ERP+  IR+WIC Y LQCL 
Sbjct: 62  RALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLF 121

Query: 119 HVVLVWMEYRRRN-TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESI 177
           HVVLVW EY RRN TRR RD E    +  ++  D E + +D      ST  SF KRCESI
Sbjct: 122 HVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDD-----NSTTYSFVKRCESI 176

Query: 178 NTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALC 237
           NT+ SF+WWI+GFYWVV GGD LL  AP LYWL+V+FLA DVFFA+FCVVLACL+GIALC
Sbjct: 177 NTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALC 236

Query: 238 CCLPCIIAILYAVAG 252
           CCLPCIIA+LYAVAG
Sbjct: 237 CCLPCIIALLYAVAG 251

Probable E3 ubiquitin-protein ligase required for embryo development.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  198 bits (503), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%)

Query: 49  PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
           PSMLVRETAA +LEER++DW YSKPVV LDI+WN AFV +  A+LI++ +E+P+  +R+W
Sbjct: 84  PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVW 143

Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRT 168
           + GY +QC +H+  V +EYRRR  RR  +D  GG      N+ S+       +      +
Sbjct: 144 VVGYGIQCWLHMACVCVEYRRRRRRRHPEDG-GGSGL--TNSSSQQYVSLAQLEDRGETS 200

Query: 169 SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVL 228
           +  K  ES NTM SF+WWI+GFYWV +GG  L   +P+LYWL ++FL FDVFF +FCV L
Sbjct: 201 NPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVAL 260

Query: 229 ACLIGIALCCCLPCIIAILYAVAGQ 253
           AC+IG+A+CCCLPCIIAILYAVA Q
Sbjct: 261 ACVIGLAVCCCLPCIIAILYAVADQ 285

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 151/228 (66%), Gaps = 30/228 (13%)

Query: 49  PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
           PSMLVRE AA +LEER++DW YSKPVV LDI+WN AFV V+ A+L+++  E P   +R+W
Sbjct: 75  PSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVW 134

Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRR-----------------------VRDDEMGGEDF 145
           + GYALQC++H+V V +EYRRRN RR                       + ++ +G    
Sbjct: 135 LLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRN 194

Query: 146 RDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAP 205
             V + S       + +  +  +S  K  ES NTM SF+WWI+GFYWV +GG  L Q +P
Sbjct: 195 SGVQDLS-------LGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESP 247

Query: 206 RLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 253
           R+YWL++VFL FDVFF +FCV LAC+IGIA+CCCLPCIIA+LYAVA Q
Sbjct: 248 RIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQ 295

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 153/217 (70%), Gaps = 12/217 (5%)

Query: 49  PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
           PSMLVRE AA +LEER++DW YSKPVV LD +WN AFV+V+ A+L+++ +E P+  +R+W
Sbjct: 49  PSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVW 108

Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTS--- 165
           I GY LQC++H+V V +EYRRRN+RR RD           ++ S DEEE   + R S   
Sbjct: 109 IIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDER 168

Query: 166 ---------TRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLA 216
                       SF K  ES NTM SF+WW++GFYWV SGG  L Q +P+LYWL +VFL 
Sbjct: 169 YLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLG 228

Query: 217 FDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 253
           FDVFF +FCV LAC+IGIA+CCCLPCIIA+LYAVA Q
Sbjct: 229 FDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQ 265

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
224101895	351	predicted protein [Populus trichocarpa]	0.938	0.692	0.740	3e-95
359472593	2299	PREDICTED: uncharacterized protein LOC10	0.915	0.103	0.771	9e-94
147769549	361	hypothetical protein VITISV_014258 [Viti	0.915	0.656	0.767	2e-93
255570075	963	cleavage and polyadenylation specificity	0.903	0.242	0.714	6e-92
30677954	359	E3 ubiquitin protein ligase RIE1 [Arabid	0.945	0.682	0.647	1e-85
356521151	352	PREDICTED: E3 ubiquitin protein ligase R	0.938	0.690	0.703	2e-85
297838553	344	hypothetical protein ARALYDRAFT_475916 [	0.915	0.688	0.633	2e-84
356513054	334	PREDICTED: E3 ubiquitin protein ligase R	0.849	0.658	0.690	2e-84
449465805	356	PREDICTED: E3 ubiquitin protein ligase R	0.949	0.691	0.643	9e-84
15220639	343	C3HC4-type RING finger domain-containing	0.911	0.688	0.637	4e-83

>gi|224101895|ref|XP_002312464.1| predicted protein [Populus trichocarpa] gi|222852284|gb|EEE89831.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/247 (74%), Positives = 207/247 (83%), Gaps = 4/247 (1%)

Query: 8   AARSDSHAPLLRPR-DPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRA 66
           +  ++ HAPLLRPR DP  SP + R  TL+ LLGRATGR  GPSMLVRETAAREL+ERRA
Sbjct: 2   STENEPHAPLLRPRQDPPTSPTS-RQTTLSALLGRATGR-RGPSMLVRETAARELDERRA 59

Query: 67  DWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWME 126
           DWGYSKPVV+LD+MWN+AFV+VS  ML++T+ ERP+T IR+WICGYALQCLVHVVLVW+E
Sbjct: 60  DWGYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVHVVLVWLE 119

Query: 127 YRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWW 186
           YRRRNTRR RD E   +   + N    DEE+D   +  S R+S TKRCES+NTM SFLWW
Sbjct: 120 YRRRNTRRERDIESQQQSTEEENVPESDEEDDRASF-ISPRSSVTKRCESVNTMVSFLWW 178

Query: 187 IVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI 246
           +VGFYWVVSGGD+LLQ AP LYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI
Sbjct: 179 MVGFYWVVSGGDVLLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI 238

Query: 247 LYAVAGQ 253
           LYAVAGQ
Sbjct: 239 LYAVAGQ 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]

 Score =  348 bits (894), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 186/241 (77%), Positives = 202/241 (83%), Gaps = 4/241 (1%)

Query: 15   APLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPV 74
            APLLRPR    +  +ARP TLALL+GRATGR  GPSMLVRETAARELEERRADWGYSKPV
Sbjct: 1956 APLLRPRQ-GTAEQSARPTTLALLMGRATGR-RGPSMLVRETAARELEERRADWGYSKPV 2013

Query: 75   VALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR 134
            VALD+MWN +FVIVS  MLI T  ERP+T IRLWICGYALQC VHVVLVW+EYRRRN RR
Sbjct: 2014 VALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRNRRR 2073

Query: 135  VRDDEMGGE-DFRDVN-NDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYW 192
            VRD+E   +    D + NDSEDE+ +        ++S TKRCES+NTMASFLWWIVGFYW
Sbjct: 2074 VRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYW 2133

Query: 193  VVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 252
            VVSGG+ LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG
Sbjct: 2134 VVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 2193

Query: 253  Q 253
            Q
Sbjct: 2194 Q 2194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769549|emb|CAN61404.1| hypothetical protein VITISV_014258 [Vitis vinifera]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/241 (76%), Positives = 202/241 (83%), Gaps = 4/241 (1%)

Query: 15  APLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPV 74
           APLLRPR    +  +ARP TLALL+GRATGR  GPSMLVRETAARELEERRADWGYSKPV
Sbjct: 12  APLLRPRQ-GTAEQSARPTTLALLMGRATGR-RGPSMLVRETAARELEERRADWGYSKPV 69

Query: 75  VALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR 134
           VALD+MWN +FVIVS  MLI T  ERP+T IRLWICGYALQC VHVVLVW+EYRRR+ RR
Sbjct: 70  VALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRSRRR 129

Query: 135 VRDDEMGGE-DFRDVN-NDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYW 192
           VRD+E   +    D + NDSEDE+ +        ++S TKRCES+NTMASFLWWIVGFYW
Sbjct: 130 VRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYW 189

Query: 193 VVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 252
           VVSGG+ LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG
Sbjct: 190 VVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 249

Query: 253 Q 253
           Q
Sbjct: 250 Q 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 204/252 (80%), Gaps = 18/252 (7%)

Query: 14  HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKP 73
           HAPLL PR       A R A+LA+LLGR TGR  GPSMLVRETAA ELEERRADWGYSKP
Sbjct: 612 HAPLLHPRQ-----EAPRAASLAMLLGRVTGR-RGPSMLVRETAALELEERRADWGYSKP 665

Query: 74  VVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR 133
           VVALD++WN+AFV+VS  MLI+++ E+P+T IR+WICGYALQCLVHVVLVW+EYRRRN+R
Sbjct: 666 VVALDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVHVVLVWIEYRRRNSR 725

Query: 134 RVRDDE----------MGGEDFRDVNNDSEDEEEDGI--VYRTSTRTSFTKRCESINTMA 181
           RVRD+E          + G+   +   + + E+EDG+     TS R+S  KRCES+NTMA
Sbjct: 726 RVRDEERQQQQQQQAEVEGQHEENEGENVDSEDEDGVDRASVTSNRSSVIKRCESVNTMA 785

Query: 182 SFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLP 241
           SFLWWIVGFYWVVSGGD LLQ AP LYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLP
Sbjct: 786 SFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLP 845

Query: 242 CIIAILYAVAGQ 253
           CIIAILYAVAGQ
Sbjct: 846 CIIAILYAVAGQ 857

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30677954|ref|NP_849924.1| E3 ubiquitin protein ligase RIE1 [Arabidopsis thaliana] gi|75299491|sp|Q8GUU2.1|RIE1_ARATH RecName: Full=E3 ubiquitin protein ligase RIE1; AltName: Full=Protein RING-FINGER FOR EMBRYOGENESIS 1 gi|27372067|gb|AAN87884.1| RES protein [Arabidopsis thaliana] gi|330250396|gb|AEC05490.1| E3 ubiquitin protein ligase RIE1 [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/255 (64%), Positives = 189/255 (74%), Gaps = 10/255 (3%)

Query: 2   SSSSDAAARSDSHAPLLRPRDPSVSPNA---ARPATLALLLGRATGRGHGPSMLVRETAA 58
           S SSD+ A  D HAPLLRPR      ++   ARP  LA+LLGR TG    PSMLVRETAA
Sbjct: 3   SYSSDSTAARDQHAPLLRPRHDGSFSSSSSSARPTALAVLLGRITGH-RAPSMLVRETAA 61

Query: 59  RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
           R LEERR DWGYSKPVVA DI+WN+A V+ SA ML+ T+ ERP+  IR+WIC Y LQCL 
Sbjct: 62  RALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLF 121

Query: 119 HVVLVWMEYRRRN-TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESI 177
           HVVLVW EY RRN TRR RD E    +  ++  D E + +D      ST  SF KRCESI
Sbjct: 122 HVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDD-----NSTTYSFVKRCESI 176

Query: 178 NTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALC 237
           NT+ SF+WWI+GFYWVV GGD LL  AP LYWL+V+FLA DVFFA+FCVVLACL+GIALC
Sbjct: 177 NTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALC 236

Query: 238 CCLPCIIAILYAVAG 252
           CCLPCIIA+LYAVAG
Sbjct: 237 CCLPCIIALLYAVAG 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521151|ref|XP_003529221.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 201/256 (78%), Gaps = 13/256 (5%)

Query: 1   MSSSSDAAARS-DSHAPLLRP-RDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAA 58
           MSS + A+  + +SHAPLLRP  D S +P      TLALLLGRA  RG  PSMLVRETAA
Sbjct: 1   MSSQTAASMEAPESHAPLLRPLTDASRAPVP----TLALLLGRAGRRG--PSMLVRETAA 54

Query: 59  RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
           RELEERRADWGYSKPVVALD+ WN AFV+V+A ML  T  ERP+T IR+WI GYALQCLV
Sbjct: 55  RELEERRADWGYSKPVVALDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLV 114

Query: 119 HVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRT-STRTSFTKRCESI 177
           HV+LVW+EYRRR+ R    D   G+  RDV +D+   +ED    R  S+  SFTKRCE +
Sbjct: 115 HVLLVWLEYRRRSRR----DSHHGQRARDVESDAGSGDEDYSDDRDWSSGYSFTKRCELL 170

Query: 178 NTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALC 237
           NT  SFLWWIVGFYWVVSGG++LLQ APRLYWL VVFLAFDVFFAIFCVVLACLIGIALC
Sbjct: 171 NTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALC 230

Query: 238 CCLPCIIAILYAVAGQ 253
           CCLPCIIAILYAVAGQ
Sbjct: 231 CCLPCIIAILYAVAGQ 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838553|ref|XP_002887158.1| hypothetical protein ARALYDRAFT_475916 [Arabidopsis lyrata subsp. lyrata] gi|297332999|gb|EFH63417.1| hypothetical protein ARALYDRAFT_475916 [Arabidopsis lyrata subsp. lyrata]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/251 (63%), Positives = 191/251 (76%), Gaps = 14/251 (5%)

Query: 3   SSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELE 62
           SS ++ + SDS  PLLR R  S      RP  +A+LLGRA+GR  G SM+VRETAA+ELE
Sbjct: 2   SSPESPSGSDSSTPLLRSRQSS----PRRPPVIAVLLGRASGR-RGASMVVRETAAQELE 56

Query: 63  ERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVL 122
           ERRADWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+WICGYA+QCLVHVVL
Sbjct: 57  ERRADWGYSKPVVALDMLWNTAFVVVAIVMLLVFKEEKPNVPIRVWICGYAIQCLVHVVL 116

Query: 123 VWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMAS 182
           VW+E+R+RN R    D    +     N+DSEDE+ D        R   TK CES+NT+ S
Sbjct: 117 VWLEFRKRNARTRTGDLEAAQG--SGNHDSEDEDND-------ERILSTKTCESMNTIIS 167

Query: 183 FLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPC 242
           F+WWI GFYW+VSGGD+LLQ A  LYWL  +FLAFDVFFAIFCVVLACLIGIALCCCLPC
Sbjct: 168 FIWWIAGFYWLVSGGDILLQNATHLYWLTFIFLAFDVFFAIFCVVLACLIGIALCCCLPC 227

Query: 243 IIAILYAVAGQ 253
           IIA+LYAVAGQ
Sbjct: 228 IIALLYAVAGQ 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513054|ref|XP_003525229.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like isoform 2 [Glycine max]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 181/242 (74%), Gaps = 22/242 (9%)

Query: 12  DSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYS 71
            SHAPLL PR  +    AAR   LALLLGR   RGH  S +VRETAARELEERRADW YS
Sbjct: 9   QSHAPLLLPRPDA----AARLPILALLLGR---RGH--SAVVRETAARELEERRADWTYS 59

Query: 72  KPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRN 131
           KPVVALDI WN AFV+VSA ML  T+ E P+T IR WICGYALQCLVHV LVW+EYRRRN
Sbjct: 60  KPVVALDITWNMAFVLVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRN 119

Query: 132 TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFY 191
                ++      + DVN+  ED               FTKRC S+NTM S LWW+VGFY
Sbjct: 120 DAPRDEESAASLQYDDVNDSDED-------------ARFTKRCASLNTMISLLWWMVGFY 166

Query: 192 WVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA 251
           WVVSGGD+LLQ APRLYWL+VVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA
Sbjct: 167 WVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA 226

Query: 252 GQ 253
           GQ
Sbjct: 227 GQ 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465805|ref|XP_004150618.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cucumis sativus] gi|449523519|ref|XP_004168771.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cucumis sativus]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 164/255 (64%), Positives = 190/255 (74%), Gaps = 9/255 (3%)

Query: 1   MSSSSDAAARSDSHAPLLRPRDPSVSPNAARP--ATLALLLGRATGRGHGPSMLVRETAA 58
            S S D  A+     PLL  R P  + +A+      LALLLGRATGR  G SMLVRETAA
Sbjct: 6   FSPSMDPPAQ---QIPLLPSRQPPSNSDASTSPIGPLALLLGRATGR-RGTSMLVRETAA 61

Query: 59  RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
           RELEERR DWGYSKPVVALDI WN AFV VS  +LI +++E+P+T IRLWI  YA QCLV
Sbjct: 62  RELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSVHEKPNTPIRLWIVVYAAQCLV 121

Query: 119 HVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESIN 178
           HVVLVW E++RRN RR RD E   +   D    +E +E+DG      + +S  KRCES+N
Sbjct: 122 HVVLVWFEFKRRNARRARDMETQQQQEPDGYVTNESDEDDG---GQRSFSSVAKRCESVN 178

Query: 179 TMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCC 238
           TM S +WW+ GFYWVV+GG++L+Q AP LYWLAVVFLAFDVFFA+FCVVLACLIGIALCC
Sbjct: 179 TMVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCC 238

Query: 239 CLPCIIAILYAVAGQ 253
           CLPCIIAILYAVAGQ
Sbjct: 239 CLPCIIAILYAVAGQ 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220639|ref|NP_176974.1| C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana] gi|12324089|gb|AAG52017.1|AC012563_27 putative RING zinc finger protein; 27623-28978 [Arabidopsis thaliana] gi|90093276|gb|ABD85151.1| At1g68070 [Arabidopsis thaliana] gi|332196622|gb|AEE34743.1| C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/251 (63%), Positives = 190/251 (75%), Gaps = 15/251 (5%)

Query: 3   SSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELE 62
           SS ++ + SDS  PLLR R  S      R   +A+LL RA+GR  G SM+VRETAA+ELE
Sbjct: 2   SSPESPSGSDSSTPLLRSRQSS----PRRQPVIAVLLNRASGR-RGASMVVRETAAQELE 56

Query: 63  ERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVL 122
           ERRADWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+WICGYA+QCLVHVVL
Sbjct: 57  ERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVL 116

Query: 123 VWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMAS 182
           VW+E+R+RN R    D    E  +  N DSEDE+ D        R   TK CES+NT+ S
Sbjct: 117 VWLEFRKRNARSRPGDL---EAAQATNQDSEDEDND-------ERFLSTKTCESMNTIIS 166

Query: 183 FLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPC 242
           F+WWIVGFYW+VSGGD+LLQ A  LYWL  VFLAFDVFFAIFCVVLACLIGIALCCCLPC
Sbjct: 167 FVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPC 226

Query: 243 IIAILYAVAGQ 253
           IIA+LYAVAGQ
Sbjct: 227 IIALLYAVAGQ 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.891	0.643	0.423	1.9e-42
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.756	0.571	0.417	3.4e-38
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.625	0.425	0.390	6.9e-31
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.613	0.407	0.401	7.9e-30
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.625	0.397	0.370	6.4e-28
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.621	0.424	0.397	1.7e-27

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 102/241 (42%), Positives = 114/241 (47%)

Query:    16 PLLRPR-DPSVSPNXXXXXXXXXXXXXXXXXXH-GPSMLVXXXXXXXXXXXXXDWGYSKP 73
             PLLRPR D S S +                  H  PSMLV             DWGYSKP
Sbjct:    17 PLLRPRHDGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKP 76

Query:    74 VVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYXXXXXX 133
             VVA DI+WN+A V+ SA ML+ T+ ERP+  IR+WIC Y LQCL HVVLVW EY      
Sbjct:    77 VVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNST 136

Query:   134 XXXDD--EMGGEDFRXXXXXXXXXXXXGIVYRTSTRTSFTKRCESINTMASFLWWIVGFY 191
                 D      ED+                   ST  SF KRCESINT+ SF+WWI+GFY
Sbjct:   137 RRARDLESYDHEDYNIEYDYEQDSDD------NSTTYSFVKRCESINTVISFIWWIIGFY 190

Query:   192 WVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVA 251
             WVV GGD LL  AP LYWL              CVV                    YAVA
Sbjct:   191 WVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVA 250

Query:   252 G 252
             G
Sbjct:   251 G 251

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 86/206 (41%), Positives = 106/206 (51%)

Query:    48 GPSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRL 107
             G SM+V             DWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+
Sbjct:    42 GASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRI 101

Query:   108 WICGYALQCLVHVVLVWMEYXXXXXXXXXDDEMGGEDFRXXXXXXXXXXXXGIVYRTSTR 167
             WICGYA+QCLVHVVLVW+E+          D    +                       R
Sbjct:   102 WICGYAIQCLVHVVLVWLEFRKRNARSRPGDLEAAQATNQDSEDED----------NDER 151

Query:   168 TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVV 227
                TK CES+NT+ SF+WWIVGFYW+VSGGD+LLQ A  LYWL              CVV
Sbjct:   152 FLSTKTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVV 211

Query:   228 XXXXXXXXXXXXXXXXXXXXYAVAGQ 253
                                 YAVAGQ
Sbjct:   212 LACLIGIALCCCLPCIIALLYAVAGQ 237

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 68/174 (39%), Positives = 90/174 (51%)

Query:    49 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
             PSMLV             DW YSKPVV LD +WN AFV+V+ A+L+++ +E P+  +R+W
Sbjct:    49 PSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVW 108

Query:   109 ICGYALQCLVHVVLVWMEYXXXXXXXXXD-DEMGGEDFRXXXXXXXXXXXXGIVYRTSTR 167
             I GY LQC++H+V V +EY         D                      G+   +  R
Sbjct:   109 IIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDER 168

Query:   168 -----------TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWL 210
                         SF K  ES NTM SF+WW++GFYWV SGG  L Q +P+LYWL
Sbjct:   169 YLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWL 222

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 65/162 (40%), Positives = 87/162 (53%)

Query:    49 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
             PSMLV             DW YSKPVV LDI+WN AFV +  A+LI++ +E+P+  +R+W
Sbjct:    84 PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVW 143

Query:   109 ICGYALQCLVHVVLVWMEYXXXXXXXXXDDEMGGEDFRXXXXXXXXXXXXGIVYRTSTRT 168
             + GY +QC +H+  V +EY         +D  GG                 +  R  T  
Sbjct:   144 VVGYGIQCWLHMACVCVEYRRRRRRRHPED--GGGSGLTNSSSQQYVSLAQLEDRGETSN 201

Query:   169 SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWL 210
                K  ES NTM SF+WWI+GFYWV +GG  L   +P+LYWL
Sbjct:   202 P-AKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWL 242

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 66/178 (37%), Positives = 89/178 (50%)

Query:    49 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
             PSMLV             DW YSKPVV LDI+WN AFV V+ A+L+++  E P   +R+W
Sbjct:    75 PSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVW 134

Query:   109 ICGYALQCLVHVVLVWMEYXX----------------XXXXXXXDDEMGGEDFRXXXXXX 152
             + GYALQC++H+V V +EY                               E+        
Sbjct:   135 LLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRN 194

Query:   153 XXXXXXGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWL 210
                    + +  +  +S  K  ES NTM SF+WWI+GFYWV +GG  L Q +PR+YWL
Sbjct:   195 SGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWL 252

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 66/166 (39%), Positives = 84/166 (50%)

Query:    49 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
             PS+ V              W YSKP++ LDI+WN  FVIVS A+L  + +E P   +RLW
Sbjct:    59 PSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRLW 118

Query:   109 ICGYALQCLVHVVLVWMEYXXXXXXXXXDDEMGGEDFRXXXXXXXXXXXXGI-VYRTSTR 167
             I GY +QCL HV  V  EY             G +               G  +  T   
Sbjct:   119 IIGYNVQCLFHVGCVIAEYKRRRVANSPPPS-GEDSSNHESLSGSEDESDGYSINNTDDD 177

Query:   168 ---TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWL 210
                TSFTK  ES NTM SF+WWI+GFYWV +  + L Q++P+LYWL
Sbjct:   178 DHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWL 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.472    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       159   0.00091  106 3  11 22  0.42    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  173 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.74u 0.13s 10.87t   Elapsed:  00:00:00
  Total cpu time:  10.74u 0.13s 10.87t   Elapsed:  00:00:00
  Start:  Sat May 11 11:23:56 2013   End:  Sat May 11 11:23:56 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GUU2	RIE1_ARATH	6, ., 3, ., 2, ., -	0.6470	0.9459	0.6824	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PF04505	82	Dispanin: Interferon-induced transmembrane protein	88.54

>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression []

Probab=88.54  E-value=0.16  Score=39.37  Aligned_cols=18  Identities=50%  Similarity=1.202  Sum_probs=13.3

Q ss_pred             HHHHhhHH-HHHHHHHHhh
Q 025004          234 IALCCCLP-CIIAILYAVA  251 (259)
Q Consensus       234 ialCCCLP-cIIaiLyav~  251 (259)
                      ..+|||+| -|++|.|+..
T Consensus        25 s~l~Cc~PlGi~Ai~~s~k   43 (82)
T PF04505_consen   25 STLCCCWPLGIVAIVYSSK   43 (82)
T ss_pred             HHHHHHhhHHHHHheechh
Confidence            34599999 4777878776

; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00