Citrus Sinensis ID: 025043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MAACHSLPFVLSILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNACKSSQQESTPREASILPVCYKSSMFATERVPTSAETSMKMEPPA
ccccccHHHHHHHHHHHHHHcccccccHHHHccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEccEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHcHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccEEEEEEEccccEEEccccEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHccccccccccccccccEEEccccccHcccccHHHHcccccccc
MAACHSLPFVLSILLLIFispslsfsedAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIvnlrlvpygnaqirgpdktiicqhgqnecylnTIHAcainawpdvrIHFKLIQCIegqasaseqpEAAWRKCCndlgfsqqpidncyqsgegtkLTLKYAeetdslkpphrfvpwvtvNNQALEEAFQNFIAYVCKAykgkflpnackssqqestpreasilpvcykssmfatervptsaetsmkmeppa
MAACHSLPFVLSILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEEtdslkpphRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNACKSsqqestpreasILPVCYKSSMFAtervptsaetsmkmeppa
MAACHslpfvlsilllifispslsfsEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNACKSSQQESTPREASILPVCYKSSMFATERVPTSAETSMKMEPPA
***CHSLPFVLSILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQA******EAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNA**************ILPVCYK***********************
*****SL***LSILLLIFISPSLS**********KVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPN*******************CYKSS**************MKMEP**
MAACHSLPFVLSILLLIFISPSLSFS*********VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEG**********AWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNA************ASILPVCYKSSMFATE****************
**ACHSLPFVLSILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNACKS**********SILP****SS*FA******************
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAACHSLPFVLSILLLIFISPSLSFSEDAAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNACKSSQQESTPREASILPVCYKSSMFATERVPTSAETSMKMEPPA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
P13284250 Gamma-interferon-inducibl yes no 0.717 0.74 0.357 9e-24
A6QPN6244 Gamma-interferon-inducibl yes no 0.693 0.733 0.350 2e-23
Q499T2248 Gamma-interferon-inducibl yes no 0.728 0.758 0.361 3e-23
Q9ESY9248 Gamma-interferon-inducibl yes no 0.728 0.758 0.351 7e-23
O17861277 GILT-like protein F37H8.5 yes no 0.689 0.642 0.342 8e-21
B3SP85246 Gamma-interferon-inducibl yes no 0.678 0.711 0.349 5e-20
P34276323 GILT-like protein C02D5.2 no no 0.674 0.538 0.283 2e-14
Q23570218 GILT-like protein ZK669.3 no no 0.736 0.871 0.23 8e-12
Q61Z40220 GILT-like protein CBG0328 N/A no 0.724 0.85 0.237 4e-11
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3 Back     alignment and function desciption
 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 19/204 (9%)

Query: 36  VKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKT--IICQHG 93
           V ++LYYE+LC  C  F+  +L   +   +  I+N+ LVPYGNAQ +         CQHG
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLLVME-ILNVTLVPYGNAQEQNVSGRWEFKCQHG 120

Query: 94  QNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDL--GFSQQPI 151
           + EC  N + AC ++   D+ + F  I C+E      E  E +   C      G S   I
Sbjct: 121 EEECKFNKVEACVLDEL-DMELAFLTIVCME----EFEDMERSLPLCLQLYAPGLSPDTI 175

Query: 152 DNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFL 211
             C     G +L    A+ TD+L+PPH +VPWVTVN + LE+  Q  +  VC+ Y+GK  
Sbjct: 176 MECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQ-LLTLVCQLYQGK-K 233

Query: 212 PNACKSSQQESTPREASILPVCYK 235
           P+ C SS        +S+  VC+K
Sbjct: 234 PDVCPSST-------SSLRSVCFK 250
Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1 Back     alignment and function description
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1 Back     alignment and function description
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3 Back     alignment and function description
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1 Back     alignment and function description
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1 Back     alignment and function description
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1 Back     alignment and function description
>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1 Back     alignment and function description
>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
224122192269 predicted protein [Populus trichocarpa] 0.984 0.944 0.461 6e-63
356496241263 PREDICTED: gamma-interferon-inducible ly 0.782 0.768 0.535 3e-59
225434490284 PREDICTED: gamma-interferon-inducible ly 0.868 0.788 0.487 1e-57
224139218242 predicted protein [Populus trichocarpa] 0.833 0.888 0.518 2e-57
225434492259 PREDICTED: gamma-interferon-inducible ly 0.779 0.776 0.524 1e-55
147805691259 hypothetical protein VITISV_012674 [Viti 0.779 0.776 0.524 1e-55
357468571351 Gamma-interferon-inducible lysosomal thi 0.767 0.564 0.519 2e-55
255574274275 Gamma-interferon-inducible lysosomal thi 0.949 0.890 0.458 3e-55
224103875255 predicted protein [Populus trichocarpa] 0.860 0.870 0.473 8e-55
224102749185 predicted protein [Populus trichocarpa] 0.705 0.983 0.562 8e-55
>gi|224122192|ref|XP_002318774.1| predicted protein [Populus trichocarpa] gi|222859447|gb|EEE96994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 167/273 (61%), Gaps = 19/273 (6%)

Query: 1   MAACHSLPFVLSILLLIFISPSLSFSEDAAAK-------------SQKVKLSLYYESLCP 47
           M +   L F++  L+ +F++PS S   DAA +             S+KV +SLYYESLCP
Sbjct: 1   MGSSPLLSFLVLTLMFLFVTPSHSSEYDAAQEPAPPFTSRKISRNSEKVTMSLYYESLCP 60

Query: 48  YCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAI 107
           YC++FI   L +V  TDL TI+NLRLVP+GNA I   + TI CQHG++ECYLN IH CAI
Sbjct: 61  YCSSFIVGPLAQVLETDLMTILNLRLVPWGNA-ILDSNSTIECQHGEDECYLNIIHTCAI 119

Query: 108 NAWPDVRIHFKLIQCIEGQASASEQ--PEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTL 165
           N WPD++ HF  I+CIE Q  A ++   E +W  C   L  S + I  CY SG G KL L
Sbjct: 120 NLWPDLKKHFNFIKCIEKQYKAPDRNGAEESWEVCSGKLRLSTKSIKKCYDSGHGKKLVL 179

Query: 166 KYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKFLPNACKSSQQESTPR 225
           +  +ETD L+PPH +VPWV V++  L + + NFI YVCKAYKGK LP  C S    S  +
Sbjct: 180 QNGKETDHLRPPHEYVPWVVVDDTPLLDDYVNFIHYVCKAYKGKSLPKTCSSHPNTSINK 239

Query: 226 EASILPVCYKSSMFATERVPTSAETSMKMEPPA 258
           + S+   C+ S   + +   +S +  MKMEP A
Sbjct: 240 DTSLQSACHASEAMSGD---SSGKHQMKMEPLA 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356496241|ref|XP_003516977.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|225434490|ref|XP_002275261.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139218|ref|XP_002323009.1| predicted protein [Populus trichocarpa] gi|118482314|gb|ABK93083.1| unknown [Populus trichocarpa] gi|222867639|gb|EEF04770.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147805691|emb|CAN76152.1| hypothetical protein VITISV_012674 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357468571|ref|XP_003604570.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355505625|gb|AES86767.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255574274|ref|XP_002528051.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223532512|gb|EEF34301.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224103875|ref|XP_002313228.1| predicted protein [Populus trichocarpa] gi|222849636|gb|EEE87183.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102749|ref|XP_002334131.1| predicted protein [Populus trichocarpa] gi|222869678|gb|EEF06809.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2149730233 OSH1 "AT5G01580" [Arabidopsis 0.751 0.832 0.53 3.1e-51
TAIR|locus:2007407265 AT1G07080 "AT1G07080" [Arabido 0.709 0.690 0.491 1.7e-50
TAIR|locus:2123286231 AT4G12900 "AT4G12900" [Arabido 0.697 0.779 0.489 4.2e-47
TAIR|locus:2135813232 AT4G12890 "AT4G12890" [Arabido 0.697 0.775 0.476 9.1e-45
TAIR|locus:2135783229 AT4G12870 "AT4G12870" [Arabido 0.693 0.781 0.457 1.1e-41
TAIR|locus:2123251243 GILT "AT4G12960" [Arabidopsis 0.759 0.806 0.413 2e-40
RGD|1310758248 Ifi30 "interferon gamma induci 0.728 0.758 0.361 8.4e-26
UNIPROTKB|P13284250 IFI30 "Gamma-interferon-induci 0.717 0.74 0.357 1.4e-25
MGI|MGI:2137648248 Ifi30 "interferon gamma induci 0.740 0.770 0.360 1.4e-25
UNIPROTKB|A6QPN6244 IFI30 "Gamma-interferon-induci 0.693 0.733 0.350 2.9e-25
TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 106/200 (53%), Positives = 133/200 (66%)

Query:    31 AKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIIC 90
             + SQKV LSLYYE+LCP+CA FI N+L K+F T L + ++L+LVP+GNA IR PD TI+C
Sbjct:    22 SSSQKVTLSLYYEALCPFCAEFIVNRLPKIFETGLISSIDLQLVPWGNAAIR-PDGTILC 80

Query:    91 QHGQNECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQP 150
             QHG+ EC LN IHACAINA+PDV  HF  I C E Q     + E  W  C   +G S+  
Sbjct:    81 QHGEAECALNAIHACAINAYPDVMKHFGYIYCTE-QLVLENKLEK-WADCLEMVGLSRAA 138

Query:   151 IDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQALEEAFQNFIAYVCKAYKGKF 210
             +D CY +G G +L  +YAEET  L P HRFVPWV VNN  L+E +QNF+ YVC AY    
Sbjct:   139 VD-CYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNFVMYVCNAYGSNQ 197

Query:   211 LPNACK--SSQQESTPREAS 228
             +P AC+  +S  E+  R  S
Sbjct:   198 VPEACRILNSSVETLSRSNS 217
GO:0003824 "catalytic activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P13284 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2137648 Ifi30 "interferon gamma inducible protein 30" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
pfam03227109 pfam03227, GILT, Gamma interferon inducible lysoso 2e-33
>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT) Back     alignment and domain information 
 Score =  116 bits (293), Expect = 2e-33
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 1/100 (1%)

Query: 36  VKLSLYYESLCPYCANFIENQLVKV-FNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQ 94
           V ++LYYESLCP C  FI NQL    F+ DL  I +L+LVP+G A+         CQHG 
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 95  NECYLNTIHACAINAWPDVRIHFKLIQCIEGQASASEQPE 134
            EC LN + AC I   P+ ++    I+C++G+ + SE  +
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQGKTNYSEGFK 100

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
KOG3160220 consensus Gamma-interferon inducible lysosomal thi 100.0
PF03227108 GILT: Gamma interferon inducible lysosomal thiol r 100.0
cd03023154 DsbA_Com1_like DsbA family, Com1-like subfamily; c 98.44
cd03019178 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m 98.31
PF13462162 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV 98.01
cd03024201 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D 97.41
PRK10954207 periplasmic protein disulfide isomerase I; Provisi 97.34
cd03025193 DsbA_FrnE_like DsbA family, FrnE-like subfamily; c 96.96
PF13743176 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C. 96.78
PF01323193 DSBA: DSBA-like thioredoxin domain; InterPro: IPR0 96.26
COG2761225 FrnE Predicted dithiol-disulfide isomerase involve 95.54
cd03022192 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car 94.95
COG1651244 DsbG Protein-disulfide isomerase [Posttranslationa 90.97
PRK11657251 dsbG disulfide isomerase/thiol-disulfide oxidase; 85.08
cd0297298 DsbA_family DsbA family; consists of DsbA and DsbA 83.46
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-54  Score=381.64  Aligned_cols=180  Identities=45%  Similarity=0.885  Sum_probs=164.2

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCC
Q 025043           32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWP  111 (258)
Q Consensus        32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~  111 (258)
                      ..++|+|+||||||||||++||++||+|+|++.+.+++||++||||||+..+++++|+||||+.||.+|++|||+|++++
T Consensus        37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~  116 (220)
T KOG3160|consen   37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLP  116 (220)
T ss_pred             cCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhhh
Confidence            45699999999999999999999999999985578999999999999999844489999999999999999999999999


Q ss_pred             cchhhhhhhhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043          112 DVRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQAL  191 (258)
Q Consensus       112 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  191 (258)
                      ++..+++||.||++     ....+.|.+|+++.+.+++.|++|++|++|.+|++++|.+|..+.|+|.|||||+|||+++
T Consensus       117 ~~~~~l~~i~C~~~-----~~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~  191 (220)
T KOG3160|consen  117 DQSDQLPFIRCIQG-----KQKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQPL  191 (220)
T ss_pred             chHhhhceehhhhc-----ccchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcch
Confidence            99999999999995     1234567789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhhcCCC-CCCCCc
Q 025043          192 EEAFQNFIAYVCKAYKGKF-LPNACK  216 (258)
Q Consensus       192 ~~a~~nL~~~VC~~y~g~~-~P~~C~  216 (258)
                      .++..||.+.+|.+|++.. +|..|.
T Consensus       192 ~~~~~~l~~~~C~~~~~~~~~~~~~~  217 (220)
T KOG3160|consen  192 QDAEQDLVTLLCEAYKGKKQKPLKCQ  217 (220)
T ss_pred             HHHHHHHHHHHHHHHhhccccCcccc
Confidence            9999999999999999852 344443

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ] Back     alignment and domain information
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti Back     alignment and domain information
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A Back     alignment and domain information
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif Back     alignment and domain information
>PRK10954 periplasmic protein disulfide isomerase I; Provisional Back     alignment and domain information
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE Back     alignment and domain information
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C Back     alignment and domain information
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family [] Back     alignment and domain information
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway Back     alignment and domain information
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional Back     alignment and domain information
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3c7m_A195 Thiol:disulfide interchange protein DSBA-like; red 8e-05
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A Length = 195 Back     alignment and structure
 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 8/163 (4%)

Query: 29  AAAKSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTI 88
             A    +K+  Y    CP+C  + +  +    +  +  IV             G   + 
Sbjct: 15  PNADKTLIKVFSYA---CPFCYKY-DKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQASE 70

Query: 89  ICQHGQNECYLNTIHACAINAWPDVRIH--FKLIQCIEGQASASEQPEAAWRKCCNDLGF 146
           +     N+     I     N+         +      + + S  + P A  +   +  G 
Sbjct: 71  VFAVLINKDKAAGISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGM 130

Query: 147 SQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQ 189
           SQ   +   +     +   K+    D  K   + VP   VN +
Sbjct: 131 SQADFEAALKEPAVQETLEKWKASYDVAKI--QGVPAYVVNGK 171

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3gha_A202 Disulfide bond formation protein D; BDBD, DSBA-lik 98.47
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 98.42
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 98.4
2rem_A193 Disulfide oxidoreductase; disulfide oxidoreductase 98.23
4dvc_A184 Thiol:disulfide interchange protein DSBA; pilus as 98.22
3hd5_A195 Thiol:disulfide interchange protein DSBA; protein 98.15
3h93_A192 Thiol:disulfide interchange protein DSBA; disulfid 98.15
3f4s_A226 Alpha-DSBA1, putative uncharacterized protein; thi 98.14
3hz8_A193 Thiol:disulfide interchange protein DSBA; thiol-ox 97.98
3gmf_A205 Protein-disulfide isomerase; oxidoreductase, PSI-2 97.97
2znm_A195 Thiol:disulfide interchange protein DSBA; thioredo 97.96
3l9v_A189 Putative thiol-disulfide isomerase or thioredoxin; 97.79
3l9s_A191 Thiol:disulfide interchange protein; thioredoxin-f 97.61
2in3_A216 Hypothetical protein; DSBA family, FRNE-like subfa 97.61
3gn3_A182 Putative protein-disulfide isomerase; MCSG, PSI, s 97.55
2imf_A203 HCCA isomerase, 2-hydroxychromene-2-carboxylate is 97.51
1z6m_A175 Conserved hypothetical protein; structural genomic 97.32
3c7m_A195 Thiol:disulfide interchange protein DSBA-like; red 97.22
3kzq_A208 Putative uncharacterized protein VP2116; protein w 97.16
3gl5_A239 Putative DSBA oxidoreductase SCO1869; probable DSB 96.96
1r4w_A226 Glutathione S-transferase, mitochondrial; glutathi 96.29
3feu_A185 Putative lipoprotein; alpha-beta structure, struct 96.01
3rpp_A234 Glutathione S-transferase kappa 1; glutathione tra 95.81
3fz5_A202 Possible 2-hydroxychromene-2-carboxylate isomeras; 95.18
1un2_A197 DSBA, thiol-disulfide interchange protein; disulfi 94.7
1v58_A241 Thiol:disulfide interchange protein DSBG; reduced 85.1
3gv1_A147 Disulfide interchange protein; neisseria gonorrhoe 80.34
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Back     alignment and structure
Probab=98.47  E-value=1.8e-06  Score=73.67  Aligned_cols=159  Identities=12%  Similarity=0.175  Sum_probs=107.2

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCC--CeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhh
Q 025043           32 KSQKVKLSLYYESLCPYCANFIENQLVKVFNTDLS--TIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINA  109 (258)
Q Consensus        32 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~  109 (258)
                      ...+|.|..|+.=.||+|++|- ..+.|.+..++.  ..|.|.+.||--             ||+.-=..-..-.|+...
T Consensus        27 ~~a~vtvvef~D~~CP~C~~~~-~~~~~~l~~~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~aa~a~~~~   92 (202)
T 3gha_A           27 DDAPVTVVEFGDYKCPSCKVFN-SDIFPKIQKDFIDKGDVKFSFVNVMF-------------HGKGSRLAALASEEVWKE   92 (202)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHTHHHHHHHTTTTTSEEEEEEECCC-------------SHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCChhHHHHH-HHhhHHHHHHhccCCeEEEEEEecCc-------------cchhHHHHHHHHHHHHhh
Confidence            5679999999999999999995 456676643443  367777776631             232211122222344332


Q ss_pred             CCcchhhhhhhhhhccccCCC--C-CchHHHHHHHHH-cCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEE
Q 025043          110 WPDVRIHFKLIQCIEGQASAS--E-QPEAAWRKCCND-LGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVT  185 (258)
Q Consensus       110 ~~~~~~~l~fI~Cm~~~~~~~--~-~~~~~~~~Ca~~-~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~  185 (258)
                        ++.++++|..=+.......  . .........++. .|+|.+.+.+|.++......+.+..+....+.  ++.+|+++
T Consensus        93 --~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~g--V~gtPtfv  168 (202)
T 3gha_A           93 --DPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMN--IQATPTIY  168 (202)
T ss_dssp             --CGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTT--CCSSCEEE
T ss_pred             --CHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCcCCEEE
Confidence              4567888877776321110  0 233456678888 89999999999998888887777777776654  89999999


Q ss_pred             ECCeecH--HHHhHHHHHHHHhhcC
Q 025043          186 VNNQALE--EAFQNFIAYVCKAYKG  208 (258)
Q Consensus       186 iNG~~~~--~a~~nL~~~VC~~y~g  208 (258)
                      |||++..  ...+.|.+.|=+...+
T Consensus       169 vnG~~~~G~~~~e~l~~~i~~~~~~  193 (202)
T 3gha_A          169 VNDKVIKNFADYDEIKETIEKELKG  193 (202)
T ss_dssp             ETTEECSCTTCHHHHHHHHHHHHHH
T ss_pred             ECCEEecCCCCHHHHHHHHHHHHHh
Confidence            9999863  3456777777666655
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Back     alignment and structure
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Back     alignment and structure
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A Back     alignment and structure
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Back     alignment and structure
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 Back     alignment and structure
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* Back     alignment and structure
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Back     alignment and structure
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} Back     alignment and structure
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Back     alignment and structure
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 Back     alignment and structure
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A Back     alignment and structure
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Back     alignment and structure
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* Back     alignment and structure
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 Back     alignment and structure
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A Back     alignment and structure
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} Back     alignment and structure
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Back     alignment and structure
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13 Back     alignment and structure
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 Back     alignment and structure
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A* Back     alignment and structure
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Back     alignment and structure
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 Back     alignment and structure
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A Back     alignment and structure
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1beda_181 Disulfide-bond formation facilitator (DsbA) {Vibri 98.3
d1fvka_188 Disulfide-bond formation facilitator (DsbA) {Esche 97.46
d1z6ma1172 Hypothetical protein EF0770 {Enterococcus faecalis 97.17
d1v58a1169 Thiol:disulfide interchange protein DsbG, C-termin 96.01
d1un2a_195 Disulfide-bond formation facilitator (DsbA) {Esche 95.06
d1t3ba1150 Disulfide bond isomerase, DsbC, C-terminal domain 84.12
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.30  E-value=2.9e-06  Score=67.13  Aligned_cols=142  Identities=17%  Similarity=0.180  Sum_probs=88.0

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcCCCeeEEEEEEEeeeeEeCCCCceeecCChhhhccchHhHhHhhhCCc
Q 025043           33 SQKVKLSLYYESLCPYCANFIENQLVKVFNTDLSTIVNLRLVPYGNAQIRGPDKTIICQHGQNECYLNTIHACAINAWPD  112 (258)
Q Consensus        33 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~~ivdl~lVPyGnA~~~~~~~~f~CQHG~~EC~gN~iqaCai~~~~~  112 (258)
                      +.++.|..|.-=.||.|++| ...+.++.. +..+-+.+.++|+--...            +..=...+..+|+...-..
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~-~~~~~~l~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~   82 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTF-EPIIAQLKQ-QLPEGAKFQKNHVSFMGG------------NMGQAMSKAYATMIALEVE   82 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHH-HHHHHHHHH-TSCTTCEEEEEECSSSSG------------GGHHHHHHHHHHHHHTTCH
T ss_pred             CCCCEEEEEECCCCccchhh-hhhhhhHhh-hcccccceeEEecccccc------------ccHHHHHHHHHHHHHhcch
Confidence            55678888999999999998 456777665 565555555554411110            0000122233333322111


Q ss_pred             chhhhhhhhhhccccCCCCCchHHHHHHHHHcCCCchhhhhhccCCchHHHHHHHHHHhccCCCCCceeeEEEECCeec
Q 025043          113 VRIHFKLIQCIEGQASASEQPEAAWRKCCNDLGFSQQPIDNCYQSGEGTKLTLKYAEETDSLKPPHRFVPWVTVNNQAL  191 (258)
Q Consensus       113 ~~~~l~fI~Cm~~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  191 (258)
                      ...+..+..=+....... ........-+...|+|.+.+.+|.++.+-++.+.+..+....+.  ++.+|+++|||++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~g--i~gTPt~~InGk~~  158 (181)
T d1beda_          83 DKMVPVMFNRIHTLRKPP-KDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSG--LTGVPAVVVNNRYL  158 (181)
T ss_dssp             HHHHHHHHHHHTTSCCCC-CSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT--CCSSSEEEETTTEE
T ss_pred             hhHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhC--CccccEEEECCEEe
Confidence            122222222222111111 23445667788999999999999999999999988888877765  89999999999964
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure