Citrus Sinensis ID: 025094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYPPPTH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcHcHHHcccccccccccccEEHHcccHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MATSNDKLQKMELRQNYQNlwhtdlmhtvtqdppyccfscicgpcvsyLLRKRALYNDMSRYVccagympcsgkcgeskcpeicLATEVFCCFANSVASTRFLLQDefniqttacdnciIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQtqhkvemdkrdgkfgpqpmavpphqqmsridqpypatvgyppqqqaygyppqgypppqgqgypppqgqgypaggypppaynqghypppth
Flexible Loop (DISEMBL)
matsndklqKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYPPPTH
Low Complexity Region (SEG)
MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVgyppqqqaygyppqgypppqgqgypppqgqgypaggypppayNQGHYPPPTH
Disordered region (IsUnstruct)
**************QNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQ****************************************************************************************
Disordered Region (DISOPRED)
***************NYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQ****************************************************************************************
Disordered Region (DISEMBL)
MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYPPPTH
Disordered Region (DISPRO)
****NDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHY*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYPPPTH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
C0ZPK5	854	ATP-dependent zinc metall	yes	no	0.255	0.077	0.394	0.0004
P37705	195	Glycine-rich protein A3 O	N/A	no	0.186	0.246	0.553	0.0005

>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
           PQP A  P Q      QP     G P    A G+PP+  P P    YP  Q  GY  G  
Sbjct: 694 PQPSA--PQQT----PQPGTPDYGAPAGWSAPGWPPRENPSPT---YPGQQSGGYTGGQN 744

Query: 244 P-PPAYNQGHYPPPTH 258
           P PP  +QG Y  P H
Sbjct: 745 PTPPNQSQGQYGQPQH 760

Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
Rhodococcus erythropolis (strain PR4 / NBRC 100887) (taxid: 234621)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|P37705|GRP3_DAUCA Glycine-rich protein A3 OS=Daucus carota PE=2 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 33/56 (58%), Gaps = 8/56 (14%)

Query: 203 PATVGYPPQQ---QAYGYPPQGYPPPQGQGYPP----PQGQGYPAGGYPPPAYNQG 251
           PA  GYPPQ       GYPPQGYPP  G GYPP    P G GYP  GYPP  ++ G
Sbjct: 35  PAAGGYPPQGYPPAGGGYPPQGYPP-AGGGYPPQGYPPAGGGYPPQGYPPAGHHSG 89

Daucus carota (taxid: 4039)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
118484679	253	unknown [Populus trichocarpa]	0.957	0.976	0.75	1e-103
15222552	232	PLAC8-like protein [Arabidopsis thaliana	0.895	0.995	0.748	1e-102
51971192	255	unnamed protein product [Arabidopsis tha	0.949	0.960	0.737	1e-102
22328885	255	PLAC8 family protein [Arabidopsis thalia	0.914	0.925	0.757	1e-101
225426188	236	PREDICTED: uncharacterized protein LOC10	0.903	0.987	0.753	1e-101
218191995	274	hypothetical protein OsI_09791 [Oryza sa	0.968	0.912	0.708	1e-101
51969140	255	unnamed protein product [Arabidopsis tha	0.914	0.925	0.753	1e-101
255537541	244	conserved hypothetical protein [Ricinus	0.852	0.901	0.810	1e-101
297840107	231	proline-rich family protein [Arabidopsis	0.891	0.995	0.744	1e-101
115450411	274	Os03g0123600 [Oryza sativa Japonica Grou	0.968	0.912	0.708	1e-101

>gi|118484679|gb|ABK94210.1| unknown [Populus trichocarpa]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/256 (75%), Positives = 210/256 (82%), Gaps = 9/256 (3%)

Query: 3   TSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRY 62
            S + L KM+LRQNY+NLWHTDLM T+  D PYCC +  CGPCVSYLLRKRALYNDMSRY
Sbjct: 2   ASQEHLDKMQLRQNYRNLWHTDLMGTIKADAPYCCLAFWCGPCVSYLLRKRALYNDMSRY 61

Query: 63  VCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGF 122
           VCCAGYMPCSG+CGES+CPE+CLATEVF CF NSVASTRF+LQDEFNIQTT CDNCIIGF
Sbjct: 62  VCCAGYMPCSGRCGESRCPELCLATEVFLCFGNSVASTRFMLQDEFNIQTTRCDNCIIGF 121

Query: 123 MFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKF 182
           MFCL Q+ACIFS+VA IVGS+E+QEASQ+L+ LAD+VYCTVCACMQTQHK+EMDKRDG F
Sbjct: 122 MFCLQQIACIFSIVAMIVGSEEIQEASQLLSCLADMVYCTVCACMQTQHKIEMDKRDGMF 181

Query: 183 GPQP-MAVPPHQQMSRIDQPYPATVGYPPQQQAYGYP---PQGYPPPQGQGYPPPQGQGY 238
           GPQP MAVPP QQMSRIDQP P +VGY P  Q YG P   P GYPP   QGYP     GY
Sbjct: 182 GPQPVMAVPPVQQMSRIDQPIPPSVGYAP--QTYGQPYGQPYGYPPQPHQGYP---VAGY 236

Query: 239 PAGGYPPPAYNQGHYP 254
           P   YPPPAY    YP
Sbjct: 237 PPSNYPPPAYPPSGYP 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222552|ref|NP_176568.1| PLAC8-like protein [Arabidopsis thaliana] gi|42571987|ref|NP_974084.1| PLAC8-like protein [Arabidopsis thaliana] gi|334183613|ref|NP_001185304.1| PLAC8-like protein [Arabidopsis thaliana] gi|12325014|gb|AAG52456.1|AC010852_13 unknown protein; 55304-53614 [Arabidopsis thaliana] gi|19424093|gb|AAL87329.1| unknown protein [Arabidopsis thaliana] gi|21436183|gb|AAM51379.1| unknown protein [Arabidopsis thaliana] gi|332196031|gb|AEE34152.1| PLAC8-like protein [Arabidopsis thaliana] gi|332196032|gb|AEE34153.1| PLAC8-like protein [Arabidopsis thaliana] gi|332196033|gb|AEE34154.1| PLAC8-like protein [Arabidopsis thaliana]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 202/250 (80%), Gaps = 19/250 (7%)

Query: 1   MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
           MA S DKL KM+LRQ+Y+NLWH+DLM TVT D PYCC SC+CGPCVSY+LR+RALYNDMS
Sbjct: 1   MAASQDKLDKMKLRQDYRNLWHSDLMGTVTADTPYCCISCLCGPCVSYMLRRRALYNDMS 60

Query: 61  RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
           RY CCAGYMPCSG+CGESKCP++CLATEVF CF NSVASTRFLLQDEFNIQTT CDNCII
Sbjct: 61  RYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCII 120

Query: 121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
           GFMFCLSQ+ACIFS+VACIVGSDEL EASQIL+  AD+VYCTVCACMQTQHK+EMDKRDG
Sbjct: 121 GFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTVCACMQTQHKLEMDKRDG 180

Query: 181 KFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPA 240
            FG QPM VPP QQMSR DQP P  VGYP                  Q YPPP  QGYP 
Sbjct: 181 VFGSQPMGVPPAQQMSRFDQPVPPPVGYP------------------QSYPPP-AQGYPP 221

Query: 241 GGYPPPAYNQ 250
             YPPP Y Q
Sbjct: 222 ASYPPPGYPQ 231

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971192|dbj|BAD44288.1| unnamed protein product [Arabidopsis thaliana]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/255 (73%), Positives = 208/255 (81%), Gaps = 10/255 (3%)

Query: 5   NDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVC 64
              ++KMELR+N++N+WHTDL H++  D PYCCF+  C PC SYLLRKRALY+DMSRYVC
Sbjct: 3   KQDMEKMELRKNFRNVWHTDLTHSIQNDTPYCCFALWCAPCASYLLRKRALYDDMSRYVC 62

Query: 65  CAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMF 124
           CAGYMPCSG+CGE+KCP++CLATEVFCCFANSVASTRFLLQDEF IQTT CDNCIIGFM 
Sbjct: 63  CAGYMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTKCDNCIIGFMV 122

Query: 125 CLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGP 184
           CLSQ+ACIFS+VACIVG DEL EASQIL   +D+VYCTVCACMQTQHK+EMDKRDGKFGP
Sbjct: 123 CLSQVACIFSIVACIVGMDELSEASQILTCCSDMVYCTVCACMQTQHKMEMDKRDGKFGP 182

Query: 185 QPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYP 244
           QPMAVPP QQMSR DQ  P  VGYPPQQ   GYPP GYP    QGYPP    GYP    P
Sbjct: 183 QPMAVPPAQQMSRFDQATPPAVGYPPQQ---GYPPSGYPQHPPQGYPP---SGYPQNP-P 235

Query: 245 PPAYNQ---GHYPPP 256
           P AY+Q   G YP P
Sbjct: 236 PSAYSQYPPGAYPLP 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328885|ref|NP_194078.2| PLAC8 family protein [Arabidopsis thaliana] gi|17065516|gb|AAL32912.1| Unknown protein [Arabidopsis thaliana] gi|20148523|gb|AAM10152.1| unknown protein [Arabidopsis thaliana] gi|51968846|dbj|BAD43115.1| unnamed protein product [Arabidopsis thaliana] gi|51969166|dbj|BAD43275.1| unnamed protein product [Arabidopsis thaliana] gi|51970384|dbj|BAD43884.1| unnamed protein product [Arabidopsis thaliana] gi|51970672|dbj|BAD44028.1| unnamed protein product [Arabidopsis thaliana] gi|51971122|dbj|BAD44253.1| unnamed protein product [Arabidopsis thaliana] gi|62319066|dbj|BAD94204.1| putative protein [Arabidopsis thaliana] gi|110741378|dbj|BAF02239.1| hypothetical protein [Arabidopsis thaliana] gi|332659362|gb|AEE84762.1| PLAC8 family protein [Arabidopsis thaliana]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/243 (75%), Positives = 204/243 (83%), Gaps = 7/243 (2%)

Query: 8   LQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAG 67
           ++KMELR+N++N+WHTDL H++  D PYCCF+  C PC SYLLRKRALY+DMSRYVCCAG
Sbjct: 6   MEKMELRKNFRNVWHTDLTHSIQNDTPYCCFALWCAPCASYLLRKRALYDDMSRYVCCAG 65

Query: 68  YMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLS 127
           YMPCSG+CGE+KCP++CLATEVFCCFANSVASTRFLLQDEF IQTT CDNCIIGFM CLS
Sbjct: 66  YMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTKCDNCIIGFMVCLS 125

Query: 128 QLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPM 187
           Q+ACIFS+VACIVG DEL EASQIL   +D+VYCTVCACMQTQHK+EMDKRDGKFGPQPM
Sbjct: 126 QVACIFSIVACIVGMDELSEASQILTCCSDMVYCTVCACMQTQHKMEMDKRDGKFGPQPM 185

Query: 188 AVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPA 247
           AVPP QQMSR DQ  P  VGYPPQQ   GYPP GYP    QGYPP    GYP    PP A
Sbjct: 186 AVPPAQQMSRFDQATPPAVGYPPQQ---GYPPSGYPQHPPQGYPP---SGYPQNP-PPSA 238

Query: 248 YNQ 250
           Y+Q
Sbjct: 239 YSQ 241

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426188|ref|XP_002279525.1| PREDICTED: uncharacterized protein LOC100246828 [Vitis vinifera] gi|297742220|emb|CBI34369.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/243 (75%), Positives = 201/243 (82%), Gaps = 10/243 (4%)

Query: 3   TSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRY 62
            S + L KM+ RQN++NLWHTDLM T+  D  YCCF+  C PCVSYLLRKRALYNDMSRY
Sbjct: 2   ASQEYLDKMQGRQNFRNLWHTDLMGTIQADTRYCCFAFWCAPCVSYLLRKRALYNDMSRY 61

Query: 63  VCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGF 122
           VCCAGYMPCSG+CGES+CPE CL TEV  CF NSVASTRFLLQDEFNIQTT CDNCIIGF
Sbjct: 62  VCCAGYMPCSGRCGESRCPEFCLCTEVLLCFGNSVASTRFLLQDEFNIQTTKCDNCIIGF 121

Query: 123 MFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKF 182
           MFCL Q+ACIFS+VA IVGSDE+QEASQ+L+ LAD+VYCTVCACMQTQHK+EMDKRDG F
Sbjct: 122 MFCLQQIACIFSIVAMIVGSDEIQEASQLLSCLADMVYCTVCACMQTQHKIEMDKRDGMF 181

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
           GPQPMA+PP QQMSRIDQP+P +VGYPP Q AYG P          GYPPPQ  GYPA  
Sbjct: 182 GPQPMAIPPLQQMSRIDQPFPPSVGYPP-QPAYGQP---------YGYPPPQAHGYPAAS 231

Query: 243 YPP 245
           YPP
Sbjct: 232 YPP 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218191995|gb|EEC74422.1| hypothetical protein OsI_09791 [Oryza sativa Indica Group]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/274 (70%), Positives = 212/274 (77%), Gaps = 24/274 (8%)

Query: 1   MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
           MA+S   L KM+LRQ+Y+NLWH+DL +T+  D PYCC +  CGPCVSY+LRKRALYNDMS
Sbjct: 1   MASSQANLDKMQLRQSYRNLWHSDLTNTIQADFPYCCLALWCGPCVSYMLRKRALYNDMS 60

Query: 61  RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
           RYVCCAGYMPCSGKCGES+CPE CLATEVF CF NSVASTRFLLQDEFNIQTT CDNCII
Sbjct: 61  RYVCCAGYMPCSGKCGESRCPEFCLATEVFLCFGNSVASTRFLLQDEFNIQTTKCDNCII 120

Query: 121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
           GFMFCL Q+ACIFS+VA IVGS+EL EASQIL+ L+D+VYC+VCACMQTQHK+EMDKRDG
Sbjct: 121 GFMFCLQQIACIFSIVAAIVGSEELSEASQILSCLSDMVYCSVCACMQTQHKIEMDKRDG 180

Query: 181 KFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYG---------YPPQGYPPPQGQGYP 231
           KFGPQPMAVPP QQMSRIDQP P  VGY PQQ AYG          P QGYPP     YP
Sbjct: 181 KFGPQPMAVPPMQQMSRIDQPIPPPVGYTPQQPAYGQPYGGYPPAPPAQGYPP---AAYP 237

Query: 232 PPQGQGYPAGG---------YPPPAYNQGHYPPP 256
           P    GYP GG          P     QG YPPP
Sbjct: 238 P---AGYPQGGAYPPPGSYPPPGSYPPQGSYPPP 268

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969140|dbj|BAD43262.1| unnamed protein product [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/243 (75%), Positives = 204/243 (83%), Gaps = 7/243 (2%)

Query: 8   LQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAG 67
           ++KMELR+N++N+WHTDL H++  D PYCCF+  C PC SYLLRKRALY+DMSRYVCCAG
Sbjct: 6   MEKMELRKNFRNVWHTDLTHSIQNDTPYCCFALWCAPCASYLLRKRALYDDMSRYVCCAG 65

Query: 68  YMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLS 127
           YMPCSG+CGE+KCP++CLATEVFCCFANSVASTRFLLQDEF IQTT CDNCIIGFM CLS
Sbjct: 66  YMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTKCDNCIIGFMVCLS 125

Query: 128 QLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPM 187
           Q+ACIFS+VACIVG DEL EASQIL   +D+VYCTVCACMQTQHK+E+DKRDGKFGPQPM
Sbjct: 126 QVACIFSIVACIVGMDELSEASQILTCCSDMVYCTVCACMQTQHKMEIDKRDGKFGPQPM 185

Query: 188 AVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPA 247
           AVPP QQMSR DQ  P  VGYPPQQ   GYPP GYP    QGYPP    GYP    PP A
Sbjct: 186 AVPPAQQMSRFDQATPPAVGYPPQQ---GYPPSGYPQHPPQGYPP---SGYPQNP-PPSA 238

Query: 248 YNQ 250
           Y+Q
Sbjct: 239 YSQ 241

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537541|ref|XP_002509837.1| conserved hypothetical protein [Ricinus communis] gi|223549736|gb|EEF51224.1| conserved hypothetical protein [Ricinus communis]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/222 (81%), Positives = 195/222 (87%), Gaps = 2/222 (0%)

Query: 3   TSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRY 62
            S + L KM+LRQNY+NLWHTDLMHT+  D PYCC S  CGPCVSYLLRKRALYNDMSRY
Sbjct: 2   ASQEHLDKMQLRQNYRNLWHTDLMHTIQADAPYCCLSFWCGPCVSYLLRKRALYNDMSRY 61

Query: 63  VCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGF 122
           VCCAGYMPCSG+CGES+CPE CLATEVFCCF NSVASTRFLLQDEFNIQTT CDNCIIGF
Sbjct: 62  VCCAGYMPCSGRCGESRCPEFCLATEVFCCFGNSVASTRFLLQDEFNIQTTKCDNCIIGF 121

Query: 123 MFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKF 182
           MFCL Q+ACIFS+VA IVGS+E+ EASQ+L+ LAD+VYCTVCACMQTQHK+EMDKRDGKF
Sbjct: 122 MFCLQQIACIFSIVAMIVGSEEISEASQLLSCLADMVYCTVCACMQTQHKIEMDKRDGKF 181

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYP-PQGYP 223
           GPQ MAVPP QQMSRIDQ  P +VGYPP Q AYG P  QGYP
Sbjct: 182 GPQVMAVPPVQQMSRIDQAIPPSVGYPP-QAAYGQPYAQGYP 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840107|ref|XP_002887935.1| proline-rich family protein [Arabidopsis lyrata subsp. lyrata] gi|297333776|gb|EFH64194.1| proline-rich family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/250 (74%), Positives = 202/250 (80%), Gaps = 20/250 (8%)

Query: 1   MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
           MA S DKL+KM+LRQ+Y+NLWH+DLM TVT D PYCC SC+CGPCVSY+LR+RALYNDMS
Sbjct: 1   MAGSQDKLEKMKLRQDYRNLWHSDLMGTVTADTPYCCISCLCGPCVSYMLRRRALYNDMS 60

Query: 61  RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
           RY CCAGYMPCSG+CGESKCP++CLATEVF CF NSVASTRFLLQDEFNIQTT CDNCII
Sbjct: 61  RYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCII 120

Query: 121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
           GFMFCLSQ+ACIFS+VACIVGSDEL EASQIL+  AD+VYCTVCACMQTQHK+EMDKRDG
Sbjct: 121 GFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTVCACMQTQHKLEMDKRDG 180

Query: 181 KFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPA 240
            FG QPM VPP QQMSR DQP                PP GYP    Q YPPP  QGYP 
Sbjct: 181 VFGSQPMGVPPAQQMSRFDQP---------------VPPAGYP----QSYPPP-AQGYPP 220

Query: 241 GGYPPPAYNQ 250
             YPP  Y Q
Sbjct: 221 ASYPPSGYPQ 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450411|ref|NP_001048806.1| Os03g0123600 [Oryza sativa Japonica Group] gi|108705929|gb|ABF93724.1| Protein of unknown function, DUF614 containing protein, expressed [Oryza sativa Japonica Group] gi|113547277|dbj|BAF10720.1| Os03g0123600 [Oryza sativa Japonica Group] gi|215715225|dbj|BAG94976.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740912|dbj|BAG97068.1| unnamed protein product [Oryza sativa Japonica Group] gi|215766629|dbj|BAG98691.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624112|gb|EEE58244.1| hypothetical protein OsJ_09229 [Oryza sativa Japonica Group]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/274 (70%), Positives = 211/274 (77%), Gaps = 24/274 (8%)

Query: 1   MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
           MA+S   L KM+LRQ+Y+NLWH+DL  T+  D PYCC +  CGPCVSY+LRKRALYNDMS
Sbjct: 1   MASSQANLDKMQLRQSYRNLWHSDLTSTIQADFPYCCLALWCGPCVSYMLRKRALYNDMS 60

Query: 61  RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
           RYVCCAGYMPCSGKCGES+CPE CLATEVF CF NSVASTRFLLQDEFNIQTT CDNCII
Sbjct: 61  RYVCCAGYMPCSGKCGESRCPEFCLATEVFLCFGNSVASTRFLLQDEFNIQTTKCDNCII 120

Query: 121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
           GFMFCL Q+ACIFS+VA IVGS+EL EASQIL+ L+D+VYC+VCACMQTQHK+EMDKRDG
Sbjct: 121 GFMFCLQQIACIFSIVAAIVGSEELSEASQILSCLSDMVYCSVCACMQTQHKIEMDKRDG 180

Query: 181 KFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYG---------YPPQGYPPPQGQGYP 231
           KFGPQPMAVPP QQMSRIDQP P  VGY PQQ AYG          P QGYPP     YP
Sbjct: 181 KFGPQPMAVPPMQQMSRIDQPIPPPVGYTPQQPAYGQPYGGYPPAPPAQGYPP---AAYP 237

Query: 232 PPQGQGYPAGG---------YPPPAYNQGHYPPP 256
           P    GYP GG          P     QG YPPP
Sbjct: 238 P---AGYPQGGAYPPPGSYPPPGSYPPQGSYPPP 268

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2195508	232	AT1G63830 "AT1G63830" [Arabido	0.798	0.887	0.820	2.9e-96
TAIR|locus:2177921	264	AT5G41390 "AT5G41390" [Arabido	0.786	0.768	0.817	2.3e-94
TAIR|locus:2117934	255	AT4G23470 [Arabidopsis thalian	0.771	0.780	0.793	2.1e-91

TAIR|locus:2195508 AT1G63830 "AT1G63830" [Arabidopsis thaliana (taxid:3702)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 169/206 (82%), Positives = 184/206 (89%)

Query:     1 MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
             MA S DKL KM+LRQ+Y+NLWH+DLM TVT D PYCC SC+CGPCVSY+LR+RALYNDMS
Sbjct:     1 MAASQDKLDKMKLRQDYRNLWHSDLMGTVTADTPYCCISCLCGPCVSYMLRRRALYNDMS 60

Query:    61 RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
             RY CCAGYMPCSG+CGESKCP++CLATEVF CF NSVASTRFLLQDEFNIQTT CDNCII
Sbjct:    61 RYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCII 120

Query:   121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
             GFMFCLSQ+ACIFS+VACIVGSDEL EASQIL+  AD+VYCTVCACMQTQHK+EMDKRDG
Sbjct:   121 GFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTVCACMQTQHKLEMDKRDG 180

Query:   181 KFGPQPMAVPPHQQMSRIDQPYPATV 206
              FG QPM VPP QQMSR DQP P  V
Sbjct:   181 VFGSQPMGVPPAQQMSRFDQPVPPPV 206

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2177921 AT5G41390 "AT5G41390" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 166/203 (81%), Positives = 181/203 (89%)

Query:     1 MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
             MA S DKL KM+LRQ+Y+NLWH+DLM TV+ D PYC FSC+CGPCVSYLLRKRALYNDMS
Sbjct:     1 MARSQDKLDKMQLRQSYRNLWHSDLMGTVSADTPYCFFSCLCGPCVSYLLRKRALYNDMS 60

Query:    61 RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
             RY CC GYMPCSGKCGESKCP+ CLATEV  CF NSVASTRF+LQDEFNI TT CDNCII
Sbjct:    61 RYTCCGGYMPCSGKCGESKCPQFCLATEVCLCFGNSVASTRFMLQDEFNIHTTKCDNCII 120

Query:   121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
             GFMFCL+Q+ACIFSLVACIVGSDEL EASQ+L+ LAD+VYCTVCACMQTQHK+EMDKRDG
Sbjct:   121 GFMFCLNQIACIFSLVACIVGSDELSEASQLLSCLADMVYCTVCACMQTQHKIEMDKRDG 180

Query:   181 KFGPQPMAVPPHQQMSRIDQPYP 203
                PQPM+VPP QQMSRIDQP P
Sbjct:   181 LISPQPMSVPPAQQMSRIDQPVP 203

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117934 AT4G23470 [Arabidopsis thaliana (taxid:3702)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 158/199 (79%), Positives = 177/199 (88%)

Query:     8 LQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAG 67
             ++KMELR+N++N+WHTDL H++  D PYCCF+  C PC SYLLRKRALY+DMSRYVCCAG
Sbjct:     6 MEKMELRKNFRNVWHTDLTHSIQNDTPYCCFALWCAPCASYLLRKRALYDDMSRYVCCAG 65

Query:    68 YMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLS 127
             YMPCSG+CGE+KCP++CLATEVFCCFANSVASTRFLLQDEF IQTT CDNCIIGFM CLS
Sbjct:    66 YMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTKCDNCIIGFMVCLS 125

Query:   128 QLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPM 187
             Q+ACIFS+VACIVG DEL EASQIL   +D+VYCTVCACMQTQHK+EMDKRDGKFGPQPM
Sbjct:   126 QVACIFSIVACIVGMDELSEASQILTCCSDMVYCTVCACMQTQHKMEMDKRDGKFGPQPM 185

Query:   188 AVPPHQQMSRIDQPYPATV 206
             AVPP QQMSR DQ  P  V
Sbjct:   186 AVPPAQQMSRFDQATPPAV 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       216   0.00088  112 3  11 22  0.43    32
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  202 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.72u 0.09s 19.81t   Elapsed:  00:00:01
  Total cpu time:  19.72u 0.09s 19.81t   Elapsed:  00:00:01
  Start:  Thu May  9 15:17:30 2013   End:  Thu May  9 15:17:31 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb01g048960.1 annotation not avaliable (301 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
pfam04749	99	pfam04749, PLAC8, PLAC8 family	1e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	8e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.002
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
pfam02084	239	pfam02084, Bindin, Bindin	0.004

>gnl|CDD|218240 pfam04749, PLAC8, PLAC8 family

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 20/112 (17%)

Query: 21  WHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYN-DMSRYVCCAGYMPCSGKCGESK 79
           W T L      D   CC    C PC+ +      L +   S    C  Y    G      
Sbjct: 1   WSTGLFD-CFDDIGTCCLGLFC-PCILFGRTAERLDDGSRSEDGSCCLYGLLYG------ 52

Query: 80  CPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLAC 131
                        F      TR  +++++NI+ + CD+C++   FC     C
Sbjct: 53  ----------LLGFWLYSCFTRTKIREKYNIEGSPCDDCLVHC-FCPPCALC 93

This family includes the Placenta-specific gene 8 protein. Length = 99

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 12/84 (14%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
           P P+  P    +S+  Q  P     PPQQQ     PQ  PPPQ Q  P P          
Sbjct: 240 PPPLQQPQFPGLSQ--QMPPPPP-QPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL 296

Query: 244 PPP---------AYNQGHYPPPTH 258
           PPP            QG    P  
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 19/75 (25%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
            QP    P    +    P P      PQQ     PP   P   G     P     P    
Sbjct: 214 VQPQQFLPAPSQAPAQPPLPPQ---LPQQP----PPLQQPQFPGLSQQMPPPPPQPPQQQ 266

Query: 244 PPPAYNQGHYPPPTH 258
             P   Q   PPP +
Sbjct: 267 QQPPQPQ-AQPPPQN 280

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 184  PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPP------PQGQG 237
             +  A+PP Q   R  QP       P  Q      PQ  PPP  +  PP      P G G
Sbjct: 2895 TESFALPPDQP-ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953

Query: 238  YPAGGYPPP---AYNQGHYPPP 256
             P+G  P P   A   G    P
Sbjct: 2954 EPSGAVPQPWLGALVPGRVAVP 2975

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 20/76 (26%), Positives = 22/76 (28%), Gaps = 5/76 (6%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQ--GYPPPQGQGYPA 240
           G      PP  Q  +  Q  P     PP Q      P     PQGQ    PPPQ      
Sbjct: 250 GLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPG---LPQGQNAPLPPPQQPQLLP 306

Query: 241 GGYPPPAYNQGHYPPP 256
               P    +G     
Sbjct: 307 LVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 23/94 (24%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 173 VEMDKRDGKFGPQPMAVPPHQQMSRIDQP---YPATVGYPPQQQAYGYPPQGYP----PP 225
           VE   +  +  PQ    PP Q + +   P        G P Q   Y  PPQG+P    P 
Sbjct: 159 VEAQLQQRQQAPQLPQ-PPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQ 217

Query: 226 QGQGYPPPQGQGYPAGGYPPPAYNQ-GHYPPPTH 258
           Q    P       P     P           P  
Sbjct: 218 QFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGL 251

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 23/89 (25%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 167 MQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQ 226
              Q   +      ++      V P  Q  +  QP      Y   QQ     PQ Y  PQ
Sbjct: 750 EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ-YQQPQ 808

Query: 227 GQGYPPPQGQGYPAGGYPPPAYNQGHYPP 255
               P PQ Q       P P Y Q   P 
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQPV 837

Length = 1355

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 17/80 (21%), Positives = 19/80 (23%), Gaps = 6/80 (7%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVG------YPPQQQAYGYPPQGYPPPQGQGYPPPQGQG 237
           P P   P  QQ     Q  P            PQ Q    PP   P        P   Q 
Sbjct: 257 PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQR 316

Query: 238 YPAGGYPPPAYNQGHYPPPT 257
            P         +Q      +
Sbjct: 317 GPQFREQLVQLSQQQREALS 336

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 11/81 (13%)

Query: 170 QHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQG 229
           Q    + +  G + P    V            Y            YG PP  YP P G  
Sbjct: 35  QRAQPVSRESGYYPPPGAYVHLEPL-----PAYGQ----YAAPPPYGPPPPYYPAPPGVY 85

Query: 230 YPPPQGQGYPAGGY--PPPAY 248
             PP            PPP Y
Sbjct: 86  PTPPPPNSGYMADPQEPPPPY 106

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 12/86 (13%)

Query: 183 GPQ-PMAVP--PHQQMSRIDQPYP-ATVGYPPQQQAYGYPPQGYPPPQGQGYP------P 232
             Q P A P  P  Q       +P A   Y  QQQ  G+PP+          P       
Sbjct: 136 QDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDRE 195

Query: 233 PQGQGYPAGGYPPPAYNQ--GHYPPP 256
           P   G P        Y+     +  P
Sbjct: 196 PYDAGRPEYDQRRRDYDHPRPDWDRP 221

Length = 617

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 184 PQPMAVPPHQQMSRID--------QPYPATVGYPPQQQ-AYGYPPQGYPPPQGQGYPPPQ 234
            QP    P Q+M  ++        +     +  PPQQ    G PP+    PQ      P 
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPP 201

Query: 235 GQGYPAGGYPPPAYNQGHYPPP 256
           G   P  G+P     Q   P P
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAP 223

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|216868 pfam02084, Bindin, Bindin

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 26/73 (35%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
            PQ M    + QM      YPA  G P QQ   GY  QG   P G G  P  G G P G 
Sbjct: 7   YPQAM----NPQMG--GGNYPA-PGQPAQQ---GYANQGMGGPVGGGGGPGAGGGAPGGP 56

Query: 243 YPPPAYNQGHYPP 255
                   G  P 
Sbjct: 57  VGGGGGGSGGPPG 69

Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PF04749	106	PLAC8: PLAC8 family; InterPro: IPR006461 This grou	99.32
TIGR01571	104	A_thal_Cys_rich uncharacterized Cys-rich domain. T	99.21
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.56
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.64
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	94.65
KOG2893	341	consensus Zn finger protein [General function pred	94.16

>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids

Probab=99.32  E-value=9.9e-13  Score=102.05  Aligned_cols=101  Identities=27%  Similarity=0.509  Sum_probs=70.0

Q ss_pred             ccccccccccCCCCcccccccchhHHHHHHHHHHhhcCC-Ccccc---cCCCCcccccccccCCCCchhhhhhhccccch
Q 025094           21 WHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDM-SRYVC---CAGYMPCSGKCGESKCPEICLATEVFCCFANS   96 (258)
Q Consensus        21 W~t~m~~apc~~p~~Cc~s~~C~pC~~y~~R~r~L~~dm-s~Y~C---C~G~~~C~g~Cge~~cp~~CLc~Ev~cC~~~a   96 (258)
                      |++||+++ ++|+..|++++|| ||+++...+++|+++. +++..   |.+...+.+...         ++ . + .+..
T Consensus         1 W~~gl~~C-~~d~~~c~~~~~c-Pc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~---------~~-~-l-~~~~   66 (106)
T PF04749_consen    1 WSTGLCDC-FSDPGSCCLACFC-PCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAA---------CL-G-L-GWCY   66 (106)
T ss_pred             CCCCCCCc-CCChHHHHHHHHH-HHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHH---------HH-H-H-hHhh
Confidence            99999998 9999999999998 7889998888887655 44422   222110000000         00 0 1 1224


Q ss_pred             hhhhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCcc
Q 025094           97 VASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDE  144 (258)
Q Consensus        97 v~~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~~  144 (258)
                      ...+|..||+||||+++.++|++..         ++|...|+++..+|
T Consensus        67 ~~~~R~~iR~ry~I~g~~~~D~~~~---------~~C~~Cal~Q~~rE  105 (106)
T PF04749_consen   67 GCSLRQQIRERYGIQGSCCEDCCCS---------CCCPPCALCQEARE  105 (106)
T ss_pred             hhhHHHHHHHHhCCCCCChhhhHHH---------HHHHHHHHHHHHhh
Confidence            5999999999999999999999865         58886666654444

These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain

Probab=99.21  E-value=9.6e-12  Score=99.29  Aligned_cols=101  Identities=23%  Similarity=0.452  Sum_probs=70.5

Q ss_pred             CcccccccccccCCCCcccccccchhHHHHHHHHHHhhcCCCcccccCCCCcccccccccCCCCchhhhhh-hccc-cch
Q 025094           19 NLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEV-FCCF-ANS   96 (258)
Q Consensus        19 n~W~t~m~~apc~~p~~Cc~s~~C~pC~~y~~R~r~L~~dms~Y~CC~G~~~C~g~Cge~~cp~~CLc~Ev-~cC~-~~a   96 (258)
                      ++|+|||+++ ++|++.|++++|| ||++++...+.+....       +      .|....   +.+.+-. .+.+ +..
T Consensus         1 ~~W~~gL~dC-~~d~~~C~~~~~C-Pc~~~g~~~~~~~~~~-------~------~C~~~~---~~~~~~~~~~~~~~~~   62 (104)
T TIGR01571         1 SNWSTGLFDC-CEDIRLCLCGLFC-PCCLFGQIAETLGTFA-------G------ECLCGG---LTAIAMSALCGFCGCY   62 (104)
T ss_pred             CCCCCCCccc-cCChhHHHHHHHH-HHHHHHHHHHHhCCCC-------C------chhhHH---HHHHHHHHHHhHHHHH
Confidence            5799999999 9999999999999 6889997777775111       1      111100   1111111 2222 234


Q ss_pred             hhhhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCcchH
Q 025094           97 VASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQ  146 (258)
Q Consensus        97 v~~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~~l~  146 (258)
                      ...+|.-||+||||+++.|+|+++.         |+|+..|+++..+||+
T Consensus        63 ~~~~R~~~R~ry~i~gs~~~D~~~~---------~~C~~C~lcQ~~RElk  103 (104)
T TIGR01571        63 TCFIRIKLREKYGIQGAPCDDCLTH---------LFCCFCALCQEHRELK  103 (104)
T ss_pred             HHHHHHHHHHHhCCCCCCcccchHH---------HHhhhHHHHHHHHHHh
Confidence            5789999999999999999999865         6888777776666654

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.56  E-value=0.00026  Score=74.05  Aligned_cols=7  Identities=29%  Similarity=0.662  Sum_probs=3.4

Q ss_pred             hhhhccc
Q 025094          173 VEMDKRD  179 (258)
Q Consensus       173 ~em~~rd  179 (258)
                      .||.+++
T Consensus       495 ael~k~e  501 (1102)
T KOG1924|consen  495 AELQKHE  501 (1102)
T ss_pred             HHHHHhh
Confidence            3455554

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.64  E-value=0.007  Score=63.81  Aligned_cols=8  Identities=0%  Similarity=0.439  Sum_probs=3.1

Q ss_pred             HHHHHHhh
Q 025094          148 ASQILNLL  155 (258)
Q Consensus       148 ~a~~ldci  155 (258)
                      ++.+||-+
T Consensus       456 ~~~liD~~  463 (1102)
T KOG1924|consen  456 LTELIDKM  463 (1102)
T ss_pred             HHHHHHHH
Confidence            33344433

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=94.65  E-value=0.23  Score=42.72  Aligned_cols=6  Identities=17%  Similarity=0.756  Sum_probs=2.6

Q ss_pred             Cccccc
Q 025094           19 NLWHTD   24 (258)
Q Consensus        19 n~W~t~   24 (258)
                      +.|+.+
T Consensus        13 g~~~~~   18 (179)
T PF13908_consen   13 GQWDPG   18 (179)
T ss_pred             CCCccC
Confidence            444444

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=94.16  E-value=0.29  Score=45.99  Aligned_cols=11  Identities=27%  Similarity=0.519  Sum_probs=4.9

Q ss_pred             HHhHHHhcCcc
Q 025094          134 SLVACIVGSDE  144 (258)
Q Consensus       134 ~~~A~~~g~~~  144 (258)
                      .|-|.+-|+++
T Consensus        64 ~ip~av~gr~~   74 (341)
T KOG2893|consen   64 KIPAAVHGRDN   74 (341)
T ss_pred             cccccccCCcc
Confidence            34444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	3e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	8e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 5e-07
 Identities = 9/77 (11%), Positives = 12/77 (15%)

Query: 182 FGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAG 241
                M +PP   +  + Q    T       Q                 P      Y   
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99

Query: 242 GYPPPAYNQGHYPPPTH 258
             P              
Sbjct: 100 QVPVQMGTPLQQQQQPM 116

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 6e-07
 Identities = 13/73 (17%), Positives = 15/73 (20%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
           PQ  A            P  A      QQ       Q +               +     
Sbjct: 32  PQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91

Query: 244 PPPAYNQGHYPPP 256
            P AY Q   P  
Sbjct: 92  DPNAYMQPQVPVQ 104

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 14/75 (18%), Positives = 17/75 (22%)

Query: 182 FGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAG 241
                 A P  Q    +    PA  G    Q             Q Q   P Q Q +   
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73

Query: 242 GYPPPAYNQGHYPPP 256
                + N  H    
Sbjct: 74  DQATTSMNDMHLHNV 88

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 10/78 (12%), Positives = 13/78 (16%)

Query: 180 GKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYP 239
           G+ G  P    P     +   P    +     Q                          P
Sbjct: 43  GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102

Query: 240 AGGYPPPAYNQGHYPPPT 257
                P    Q     P 
Sbjct: 103 VQMGTPLQQQQQPMAAPA 120

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 11/76 (14%), Positives = 14/76 (18%), Gaps = 3/76 (3%)

Query: 182 FGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAG 241
            G Q    P  +Q+    Q              +  P            P   G      
Sbjct: 56  MGQQQFLTPAQEQLH---QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQ 112

Query: 242 GYPPPAYNQGHYPPPT 257
             P  A   G      
Sbjct: 113 QQPMAAPAYGQPSAAM 128

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 7/75 (9%), Positives = 11/75 (14%)

Query: 182 FGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAG 241
               P+  P      +       + G          P  G              Q   A 
Sbjct: 18  QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

Query: 242 GYPPPAYNQGHYPPP 256
                 +        
Sbjct: 78  TSMNDMHLHNVPLVD 92

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 11/74 (14%), Positives = 15/74 (20%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
             Q  A     Q           +G PPQ        Q +  P  +       Q   +  
Sbjct: 22  PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81

Query: 243 YPPPAYNQGHYPPP 256
                      P  
Sbjct: 82  DMHLHNVPLVDPNA 95

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 12/73 (16%), Positives = 14/73 (19%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
            +       Q               PPQ  A      G      QG  P  GQ       
Sbjct: 6   KRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPA 65

Query: 244 PPPAYNQGHYPPP 256
               + Q      
Sbjct: 66  QEQLHQQIDQATT 78

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 15/76 (19%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
            P   AVP   Q   +            Q          +  P        Q Q     G
Sbjct: 47  MPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106

Query: 243 YPPPAYNQGHYPPPTH 258
            P     Q    P   
Sbjct: 107 TPLQQQQQPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 10/77 (12%), Positives = 12/77 (15%)

Query: 182 FGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAG 241
           F          Q            +   P      Y     P   G      Q       
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 242 GYPPPAYNQGHYPPPTH 258
              P A    +  P   
Sbjct: 121 YGQPSAAMGQNMRPMNQ 137

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 187 MAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPP 246
           M+    +   +    Y      P QQ A   PPQ    P   G    Q    P G  P  
Sbjct: 1   MSHHKKRVYPQAQLQYGQN-ATPLQQPAQFMPPQ---DPAAAGMSYGQMGMPPQGAVPSM 56

Query: 247 AYNQGHYPPPTH 258
              Q   P    
Sbjct: 57  GQQQFLTPAQEQ 68

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 3/79 (3%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPP---PQGQGYPPPQGQGYP 239
             Q +     Q   +IDQ   +             P     P    Q       Q Q   
Sbjct: 58  QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 240 AGGYPPPAYNQGHYPPPTH 258
           A  Y  P+   G    P +
Sbjct: 118 APAYGQPSAAMGQNMRPMN 136

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 8/76 (10%), Positives = 11/76 (14%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
           G  P            +Q +                      P     P    Q      
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 243 YPPPAYNQGHYPPPTH 258
                     Y  P+ 
Sbjct: 111 QQQQPMAAPAYGQPSA 126

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 7/75 (9%), Positives = 8/75 (10%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
           PQ       QQ                   +         P                G  
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

Query: 244 PPPAYNQGHYPPPTH 258
                     P    
Sbjct: 109 LQQQQQPMAAPAYGQ 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 9/74 (12%), Positives = 13/74 (17%), Gaps = 2/74 (2%)

Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
            Q +              +   +  P        P Q   P Q Q  P            
Sbjct: 70  HQQIDQATTSMNDM--HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

Query: 244 PPPAYNQGHYPPPT 257
                   +   P 
Sbjct: 128 MGQNMRPMNQLYPI 141

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 176 DKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQ--QQAYGYPPQGYPPPQGQGYPPP 233
            +   +F  Q        QMS   +  P          Q   G        P G  +P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208

Query: 234 QGQGYPAGGYPPPAYNQGHY 253
            G G P   +P    +  H+
Sbjct: 209 AGPGGPPPPFPAGQTHHHHH 228

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 21/89 (23%), Gaps = 7/89 (7%)

Query: 175 MDKRDGK-FGPQPMAV---PPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPP---PQG 227
           MD    +    Q   V             Q    T       +    PP G      PQG
Sbjct: 129 MDLLPKRELHGQNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQG 188

Query: 228 QGYPPPQGQGYPAGGYPPPAYNQGHYPPP 256
                      P G   P     G  PPP
Sbjct: 189 GRGRGRFPGAVPGGDRFPGPAGPGGPPPP 217

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 180 GKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQ--GYPPPQGQGYPPPQGQG 237
            K  P+P             Q  P    YPPQ       P   G+  P G G+  P G G
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 238 Y---PAGGYPPPAYNQGHYPPPTH 258
           +     GG+  P    G     TH
Sbjct: 62  WGQPHGGGWGQPHGGGGWGQGGTH 85

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 23/77 (29%), Positives = 27/77 (35%)

Query: 180 GKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYP 239
           G  GP    + P  + +       AT         Y     G PPP G+G PPP   G P
Sbjct: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192

Query: 240 AGGYPPPAYNQGHYPPP 256
            G  PP     G  P  
Sbjct: 193 PGMRPPMGPPMGIPPGR 209

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 167 MQTQHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQ 226
           M  Q +  +              P      R   P P   G PP       PP G  PP 
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPG--MMGPPPGMRPPM 199

Query: 227 GQGYPPPQGQGYPAGGYPPPAYNQGHYPPP 256
           G     P G+G P G  PP     G  PPP
Sbjct: 200 GPPMGIPPGRGTPMGMPPP-----GMRPPP 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
           GP      P QQ+                  +    P  YPP +G   PPP G+G P  G
Sbjct: 129 GPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP-PPPMGRGAPPPG 187

Query: 243 YPPPAYNQGHYPPP 256
              P    G  PP 
Sbjct: 188 MMGP--PPGMRPPM 199

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 29/69 (42%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
             Q        Q            GYPPQ    GYPPQGYPP QG   PP   QG P  G
Sbjct: 380 KMQQQQAAYPPQGYAPPPQGYPPQGYPPQ----GYPPQGYPP-QGYPPPP---QGAPPQG 431

Query: 243 YPPPAYNQG 251
            PP A  QG
Sbjct: 432 APPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 29/67 (43%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 192 HQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYP----PPQGQGYPAGGYPPPA 247
            Q+M +    YP     PP Q   GYPPQGYPP   QGYP    PPQG   P  G PP  
Sbjct: 378 MQKMQQQQAAYPPQGYAPPPQ---GYPPQGYPP---QGYPPQGYPPQGYPPPPQGAPPQG 431

Query: 248 YNQGHYP 254
                 P
Sbjct: 432 APPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 33/75 (44%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 183 GPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGG 242
            P   A    + M+ + +       YPPQ   Y  PPQGYPP   QGYPP   QGYP  G
Sbjct: 363 APSADAAQMKEMMAMMQKMQQQQAAYPPQ--GYAPPPQGYPP---QGYPP---QGYPPQG 414

Query: 243 YPPPAYNQGHYPPPT 257
           YPP    QG+ PPP 
Sbjct: 415 YPP----QGYPPPPQ 425

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 209 PPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYPPPT 257
                + G  P+G   PQG GY  P G+ Y  G    P Y Q      +
Sbjct: 6   HHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYS 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00