Citrus Sinensis ID: 025157

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEEccccccEEEccccccccccccccccHcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqvktfanhfvsspnSRLKLLSQSLTSCSKTFLISTTLQwhssllpsrlcvfapkdhqkrFITTCLsssqefasendisdtsvslsaeKEEEEKAVEVKTEGLADQSIWNQIKEIMKftgpatglwicgplmslidtavigqgsslelaalgpgtvlcdnMSYIFMFLSIATSNLVAtsltnrdkneVQHQISVLLFVGLACGFSMLIFTKFFGMQAlsaftgsknvhilpaaNKYVQIRGLAWPAVLTGWVAQSAR
Flexible Loop (DISEMBL)
mqvktfanhfvsspnsrLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLsssqefasendisdtsvslsaekEEEEKavevktegladqsIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Low Complexity Region (SEG)
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSaekeeeekavevkTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Disordered region (IsUnstruct)
*******************LLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCL************************************LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA****
Disordered Region (DISOPRED)
****************************************************************************************************************KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Disordered Region (DISEMBL)
********HFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSS*******************************EGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Disordered Region (DISPRO)
*QVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASE********************VEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q8W4G3	559	MATE efflux family protei	yes	no	0.797	0.366	0.610	2e-70
Q945F0	543	Enhanced disease suscepti	no	no	0.599	0.283	0.740	2e-65

>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 161/218 (73%), Gaps = 13/218 (5%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 44  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 102

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 103 KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 162

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 163 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 222

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSA
Sbjct: 223 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSA 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 132/154 (85%)

Query: 103 LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS 162
           L  QSIW Q+KEI+KFTGPA G+WICGPLMSLIDT VIGQGSS+ELAALGPGTVLCD+MS
Sbjct: 90  LVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMS 149

Query: 163 YIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
           Y+FMFLS+ATSN+VATSL  +DK E QHQISVLLF+GL CG  ML+ T+ FG  A++AFT
Sbjct: 150 YVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFT 209

Query: 223 GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
             KN+ I+PAANKY+QIRGLAWP +L G VAQSA
Sbjct: 210 RGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSA 243

Plays an essential function in the salicylic acid-dependent pathway of plant defense against pathogens. Might be part of the functional mechanism for the induction of salicylic acid biosynthesis. Might be a transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
224103339	553	predicted protein [Populus trichocarpa]	0.976	0.453	0.596	6e-76
255543829	552	DNA-damage-inducible protein f, putative	0.972	0.452	0.593	1e-75
255543827	567	DNA-damage-inducible protein f, putative	0.910	0.412	0.621	3e-75
297821327	547	hypothetical protein ARALYDRAFT_480999 [	0.863	0.405	0.612	7e-73
225427736	567	PREDICTED: MATE efflux family protein 4,	0.949	0.430	0.576	8e-72
297744747	621	unnamed protein product [Vitis vinifera]	0.949	0.392	0.576	1e-71
225427734	535	PREDICTED: MATE efflux family protein 4,	0.782	0.375	0.673	9e-71
357473485	550	Enhanced disease susceptibility [Medicag	0.910	0.425	0.584	6e-70
240254500	559	MATE efflux family protein [Arabidopsis	0.797	0.366	0.610	1e-68
20197910	555	expressed protein [Arabidopsis thaliana]	0.797	0.369	0.610	1e-68

>gi|224103339|ref|XP_002313018.1| predicted protein [Populus trichocarpa] gi|222849426|gb|EEE86973.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 183/258 (70%), Gaps = 7/258 (2%)

Query: 1   MQVKTF--ANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQ 58
           MQ +T    +H + + N   + LS+SL S  K  L   +   HSSLL     V  P    
Sbjct: 1   MQARTLLHCSHTLQNHNHP-RFLSRSLISFKKRPLSLVSPNSHSSLLHPIPLVIKPS--- 56

Query: 59  KRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKF 118
            R +  C S + E A+ +   + S + S  +  EE  +EV  EGL +QS+W Q+KEI+ F
Sbjct: 57  -RLLAPCNSPAHESANNSVTENESSTDSISEFIEETGIEVNREGLENQSMWEQMKEIVMF 115

Query: 119 TGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVAT 178
           TGPATGLWICGPLMSLIDTAVIGQGSS+ELAALGPGTVLCD MSYIFMFLSIATSN+VAT
Sbjct: 116 TGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPGTVLCDGMSYIFMFLSIATSNMVAT 175

Query: 179 SLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQ 238
           SL  +DKNEVQHQ+S+LLF+GL CG  M +FTKFFG  AL AF GS N+ I+PAAN YVQ
Sbjct: 176 SLAKQDKNEVQHQLSMLLFIGLTCGSLMFLFTKFFGPSALKAFAGSNNLDIIPAANTYVQ 235

Query: 239 IRGLAWPAVLTGWVAQSA 256
           IRGLAWPA+L GWVAQSA
Sbjct: 236 IRGLAWPAILIGWVAQSA 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543829|ref|XP_002512977.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547988|gb|EEF49480.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/258 (59%), Positives = 188/258 (72%), Gaps = 8/258 (3%)

Query: 1   MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKR 60
           M +KT  +H  SS  S      +    C  TF     L      LPS L + A K  +  
Sbjct: 1   MLIKTLNHHSFSSLISLQNPNFKKHNHCLITFNKPPPLH-----LPS-LHLSALKYQRNG 54

Query: 61  FITTCLSSSQE--FASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKF 118
            I+ C+SSS++  + S+N+    S +     + +E+ VE++ +GL +QSIW Q+KEI+ F
Sbjct: 55  LISNCISSSKDVVYDSDNNQGIESGNDGNIVQFQEQEVEIERDGLENQSIWKQMKEIVMF 114

Query: 119 TGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVAT 178
           TGPATGLW+CGPLMSLIDTAVIGQGSS+ELAALGPGTV+CD MSY+FMFLS+ATSNLVAT
Sbjct: 115 TGPATGLWLCGPLMSLIDTAVIGQGSSIELAALGPGTVVCDYMSYVFMFLSVATSNLVAT 174

Query: 179 SLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQ 238
           SL  R+KNEVQHQIS+LLFVGLACG  M +FT+FFG  AL+AFTG K+VHI+PAAN YVQ
Sbjct: 175 SLARRNKNEVQHQISILLFVGLACGVFMFLFTRFFGSWALTAFTGPKHVHIVPAANTYVQ 234

Query: 239 IRGLAWPAVLTGWVAQSA 256
           IRGLAWPAV+ GWVAQSA
Sbjct: 235 IRGLAWPAVIVGWVAQSA 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543827|ref|XP_002512976.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547987|gb|EEF49479.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/251 (62%), Positives = 184/251 (73%), Gaps = 17/251 (6%)

Query: 19  KLLSQSLTSCSKTFLISTTL---QWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFAS- 74
           + L QSL    K  L S +L    +H+S LP  L +F   +   R +T C+S S+EF S 
Sbjct: 21  RFLPQSLPHLKKPSL-SVSLAPPNFHNSFLPPDLVIF---NSSSRLVTPCISPSKEFVSD 76

Query: 75  ---ENDISDTSVSLSAEKEEEEKAVEVKT------EGLADQSIWNQIKEIMKFTGPATGL 125
              EN+ S  S  L  E+ EE++  E +T      +GL  QSIWNQIKEI+ FT PATGL
Sbjct: 77  SVSENETSVASNYLLVEEGEEKEEDEEETRMVGSRQGLESQSIWNQIKEIVMFTAPATGL 136

Query: 126 WICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185
           WI GPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY+FMFLSI+TSNLVATSL  +DK
Sbjct: 137 WITGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLSISTSNLVATSLAKQDK 196

Query: 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWP 245
           NEVQHQ+SVLLF+ L CGF M++FTKF G   L+AFTGS N+H++P AN YVQIRGLAWP
Sbjct: 197 NEVQHQLSVLLFIALTCGFLMILFTKFLGTSVLTAFTGSSNLHLVPVANTYVQIRGLAWP 256

Query: 246 AVLTGWVAQSA 256
           A+L GWVAQSA
Sbjct: 257 AILIGWVAQSA 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821327|ref|XP_002878546.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata] gi|297324385|gb|EFH54805.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata]

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/222 (61%), Positives = 164/222 (73%)

Query: 35  STTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEK 94
           S TL+  +  LPS            RF+  C S +QE  ++ +  +  +S  A      +
Sbjct: 27  SITLRSWNPPLPSFRSSSVSGAKLNRFLRNCASPNQELVADEETGNGLISEEANGSISPE 86

Query: 95  AVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPG 154
             EVK + LA+Q+IW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP 
Sbjct: 87  VEEVKVDDLANQNIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPA 146

Query: 155 TVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFG 214
           TV+CD + Y FMFLS+ATSNLVATSL  RDK+EVQHQIS+LLF+GLACG +M++FT+ FG
Sbjct: 147 TVICDYLCYTFMFLSVATSNLVATSLARRDKDEVQHQISILLFIGLACGVTMMVFTRLFG 206

Query: 215 MQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
             AL+AFTG KN  I+PAAN YVQIRGLAWPAVL GWVAQSA
Sbjct: 207 SWALTAFTGVKNAEIVPAANTYVQIRGLAWPAVLIGWVAQSA 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427736|ref|XP_002274813.1| PREDICTED: MATE efflux family protein 4, chloroplastic [Vitis vinifera]

 Score =  276 bits (705), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 181/267 (67%), Gaps = 23/267 (8%)

Query: 7   ANHF-VSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVF-APKDHQKRFITT 64
           A+HF + +P+ R        +  S +F  S   ++ +S  PS LC+  A  D + R    
Sbjct: 9   ASHFHLQNPDLR------RFSPPSTSFSNSPNTRFRNSPAPSLLCISPAANDRRHRLTAL 62

Query: 65  CLSSSQEF-------ASENDISDTSVS--------LSAEKEEEEKAVEVKTEGLADQSIW 109
           C SSSQE        ASEN  +   VS           E+  E      + E  ADQSI 
Sbjct: 63  CKSSSQEVLGETQDVASENGGNGALVSSFEEEDVGEGEEEAVEVVVGSKRKEFAADQSIL 122

Query: 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLS 169
           NQ+K+I+ F+GPAT LWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY+FMFLS
Sbjct: 123 NQMKKIVMFSGPATALWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLS 182

Query: 170 IATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHI 229
           IATSN+VAT+L  +DK EVQHQIS+LLF+GLACG  ML F KF G  AL+AFTG KN H+
Sbjct: 183 IATSNMVATALARKDKKEVQHQISILLFIGLACGVLMLFFMKFLGAWALTAFTGPKNAHL 242

Query: 230 LPAANKYVQIRGLAWPAVLTGWVAQSA 256
           +PAAN YVQIRGLAWPAVL GWVAQSA
Sbjct: 243 VPAANTYVQIRGLAWPAVLIGWVAQSA 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744747|emb|CBI38009.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 181/267 (67%), Gaps = 23/267 (8%)

Query: 7   ANHF-VSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVF-APKDHQKRFITT 64
           A+HF + +P+ R        +  S +F  S   ++ +S  PS LC+  A  D + R    
Sbjct: 63  ASHFHLQNPDLR------RFSPPSTSFSNSPNTRFRNSPAPSLLCISPAANDRRHRLTAL 116

Query: 65  CLSSSQEF-------ASENDISDTSVS--------LSAEKEEEEKAVEVKTEGLADQSIW 109
           C SSSQE        ASEN  +   VS           E+  E      + E  ADQSI 
Sbjct: 117 CKSSSQEVLGETQDVASENGGNGALVSSFEEEDVGEGEEEAVEVVVGSKRKEFAADQSIL 176

Query: 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLS 169
           NQ+K+I+ F+GPAT LWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY+FMFLS
Sbjct: 177 NQMKKIVMFSGPATALWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLS 236

Query: 170 IATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHI 229
           IATSN+VAT+L  +DK EVQHQIS+LLF+GLACG  ML F KF G  AL+AFTG KN H+
Sbjct: 237 IATSNMVATALARKDKKEVQHQISILLFIGLACGVLMLFFMKFLGAWALTAFTGPKNAHL 296

Query: 230 LPAANKYVQIRGLAWPAVLTGWVAQSA 256
           +PAAN YVQIRGLAWPAVL GWVAQSA
Sbjct: 297 VPAANTYVQIRGLAWPAVLIGWVAQSA 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427734|ref|XP_002274783.1| PREDICTED: MATE efflux family protein 4, chloroplastic-like [Vitis vinifera]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 158/208 (75%), Gaps = 7/208 (3%)

Query: 56  DHQKRFITTCLSSSQ------EFASENDISDTSVSL-SAEKEEEEKAVEVKTEGLADQSI 108
           +   RF   C+ SS+      EF + N+ +  SVSL   ++ E E     K E   +QSI
Sbjct: 2   NRGSRFAIGCIGSSEVVGDGVEFVAGNEENVGSVSLLEEDEVEVEVVGVGKQEFGVNQSI 61

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFL 168
           W Q+KEIM FTGPATGLWICGPLMSLIDTAVIGQGSS+ELAALGPGTV+CD MSY+FMFL
Sbjct: 62  WEQMKEIMMFTGPATGLWICGPLMSLIDTAVIGQGSSVELAALGPGTVVCDYMSYVFMFL 121

Query: 169 SIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVH 228
           SIATSN+VATSL  +DKNEVQHQIS LLFVG  CG  ML+FTKF G  AL+ FTG KN H
Sbjct: 122 SIATSNMVATSLARQDKNEVQHQISTLLFVGFTCGVLMLLFTKFLGAWALTVFTGPKNAH 181

Query: 229 ILPAANKYVQIRGLAWPAVLTGWVAQSA 256
           I+PAAN YVQIRGLAWPAVL GWVAQSA
Sbjct: 182 IVPAANVYVQIRGLAWPAVLVGWVAQSA 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473485|ref|XP_003607027.1| Enhanced disease susceptibility [Medicago truncatula] gi|355508082|gb|AES89224.1| Enhanced disease susceptibility [Medicago truncatula]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 146/250 (58%), Positives = 168/250 (67%), Gaps = 16/250 (6%)

Query: 8   NHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLS 67
           +HF    N  LK LS          L  T    H  L  S L + A   H  RF+T    
Sbjct: 17  HHFPPRQNPNLKSLS----------LFPTISHPHLPLHFSSLSISA--LHPTRFVTARAI 64

Query: 68  SSQEF-ASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLW 126
             +E    E  IS+ S     E E   + VE   + LA+Q IW Q+KEI+KFT PATGLW
Sbjct: 65  QPRELTGDEGRISEPSEEAKIENEAATQGVE---KELANQGIWIQLKEIVKFTAPATGLW 121

Query: 127 ICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186
           ICGPLMSLIDTAVIGQGSS+ELAALGP TV+CD MSY+FMFLS+ATSN+VAT+L  +D  
Sbjct: 122 ICGPLMSLIDTAVIGQGSSIELAALGPATVVCDYMSYVFMFLSVATSNMVATALAKQDTE 181

Query: 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPA 246
           EVQH ISVLLFVGLACGF ML+FT  FG   L+AFTG KN H++PAAN YVQIRGLAWPA
Sbjct: 182 EVQHHISVLLFVGLACGFMMLLFTWLFGAATLTAFTGIKNAHVVPAANTYVQIRGLAWPA 241

Query: 247 VLTGWVAQSA 256
           +L GWVAQSA
Sbjct: 242 LLVGWVAQSA 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254500|ref|NP_565509.4| MATE efflux family protein [Arabidopsis thaliana] gi|75162471|sp|Q8W4G3.1|MATE4_ARATH RecName: Full=MATE efflux family protein 4, chloroplastic; AltName: Full=Protein DTX46; Flags: Precursor gi|17065002|gb|AAL32655.1| Unknown protein [Arabidopsis thaliana] gi|22136238|gb|AAM91197.1| unknown protein [Arabidopsis thaliana] gi|330252070|gb|AEC07164.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 161/218 (73%), Gaps = 13/218 (5%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 44  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 102

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 103 KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 162

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 163 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 222

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSA
Sbjct: 223 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSA 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197910|gb|AAD23682.2| expressed protein [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 161/218 (73%), Gaps = 13/218 (5%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 40  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 98

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 99  KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 158

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 159 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 218

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSA
Sbjct: 219 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSA 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2050140	559	AT2G21340 [Arabidopsis thalian	0.875	0.402	0.584	1.8e-64
TAIR|locus:2120267	543	EDS5 "AT4G39030" [Arabidopsis	0.599	0.283	0.740	6.4e-60
UNIPROTKB|Q5LPD9	441	dinF "DNA-damage-inducible pro	0.536	0.312	0.273	3.9e-06
TIGR_CMR|SPO_2909	441	SPO_2909 "DNA-damage-inducible	0.536	0.312	0.273	3.9e-06
TAIR|locus:2077477	526	FRD3 "FERRIC REDUCTASE DEFECTI	0.291	0.142	0.311	7.1e-05
TAIR|locus:2008236	515	AT1G51340 [Arabidopsis thalian	0.233	0.116	0.419	0.00059
UNIPROTKB|P28303	459	dinF "DinF MATE Transporter" [	0.486	0.272	0.299	0.00064

TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 139/238 (58%), Positives = 164/238 (68%)

Query:    32 FLISTTLQ-WHSSLLPSRL-CVFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSX 87
             F  S TL+ W+ S    R   V  PK   K  RF+  C S++QE   + +  + S+S   
Sbjct:    23 FPSSLTLRSWNPSFPSFRSSAVSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSISELQ 82

Query:    88 XXXXXXXXXXXXTEG---------LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTA 138
                          E          LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTA
Sbjct:    83 GDAANGSISPVEVEAEVEEVKVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTA 142

Query:   139 VIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFV 198
             VIGQGSSLELAALGP TV+CD + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+
Sbjct:   143 VIGQGSSLELAALGPATVICDYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFI 202

Query:   199 GLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
             GLACG +M++ T+ FG  AL+AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSA
Sbjct:   203 GLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSA 260

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 114/154 (74%), Positives = 132/154 (85%)

Query:   103 LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS 162
             L  QSIW Q+KEI+KFTGPA G+WICGPLMSLIDT VIGQGSS+ELAALGPGTVLCD+MS
Sbjct:    90 LVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMS 149

Query:   163 YIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
             Y+FMFLS+ATSN+VATSL  +DK E QHQISVLLF+GL CG  ML+ T+ FG  A++AFT
Sbjct:   150 YVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFT 209

Query:   223 GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
               KN+ I+PAANKY+QIRGLAWP +L G VAQSA
Sbjct:   210 RGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSA 243

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;ISS

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0006952 "defense response" evidence=TAS

GO:0009624 "response to nematode" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006520 "cellular amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q5LPD9 dinF "DNA-damage-inducible protein F" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 40/146 (27%), Positives = 72/146 (49%)

Query:   113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
             + ++K   P     +  P++  +DTAV+GQ   +  +AA+G G ++   + +IF FL + 
Sbjct:    10 QRVLKIAVPIMLANMTVPILGAVDTAVVGQIPQAAPIAAVGVGAIILSAIYWIFGFLRMG 69

Query:   172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
             T+ L A +     + EV   ++  L +G+A G ++++        AL+    S  V  L 
Sbjct:    70 TAGLTAQAHGAGHEGEVAALLTRSLMIGVAGGVALILLQLPIYWGALAVSPASAEVETL- 128

Query:   232 AANKYVQIRGLAWPAVL-----TGWV 252
              A  Y+ IR  + PA +     TGW+
Sbjct:   129 -ARGYMSIRIWSAPAAIAIYGITGWL 153

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SPO_2909 SPO_2909 "DNA-damage-inducible protein F" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 40/146 (27%), Positives = 72/146 (49%)

Query:   113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
             + ++K   P     +  P++  +DTAV+GQ   +  +AA+G G ++   + +IF FL + 
Sbjct:    10 QRVLKIAVPIMLANMTVPILGAVDTAVVGQIPQAAPIAAVGVGAIILSAIYWIFGFLRMG 69

Query:   172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
             T+ L A +     + EV   ++  L +G+A G ++++        AL+    S  V  L 
Sbjct:    70 TAGLTAQAHGAGHEGEVAALLTRSLMIGVAGGVALILLQLPIYWGALAVSPASAEVETL- 128

Query:   232 AANKYVQIRGLAWPAVL-----TGWV 252
              A  Y+ IR  + PA +     TGW+
Sbjct:   129 -ARGYMSIRIWSAPAAIAIYGITGWL 153

GO:0003674 "molecular_function" evidence=ND

GO:0006974 "response to DNA damage stimulus" evidence=ISS

TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query:   113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF--LSI 170
             +EI+    PA       P+ SLIDTA +G+  +++LAA+G    + +  S I +F  +S+
Sbjct:    35 REILGIAFPAALALAADPIASLIDTAFVGRLGAVQLAAVGVSIAIFNQASRITIFPLVSL 94

Query:   171 ATSNLVATSLTNRDKNE 187
              TS +       + K E
Sbjct:    95 TTSFVAEEDTMEKMKEE 111

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0015137 "citrate transmembrane transporter activity" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query:   114 EIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF--LSIA 171
             EI +   PA       P+ SL+DTA IGQ   +ELAA+G    L + +S I +F  +SI 
Sbjct:    35 EIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSIT 94

Query:   172 TS 173
             TS
Sbjct:    95 TS 96

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
 Identities = 41/137 (29%), Positives = 67/137 (48%)

Query:   130 PLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188
             PL+ L+DTAVIG   S + L  +  G      +  + +FL ++T+ L A +   ++   +
Sbjct:    44 PLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQAL 103

Query:   189 QHQISVLLFVGLACGFSM-LIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPA- 246
                +   L + L  G  + L+ T    + AL    GS+ V  L  A ++++IR L+ PA 
Sbjct:   104 ARTLVQPLLLALGAGALIALLRTPIIDL-ALHIVGGSEAV--LEQARRFLEIRWLSAPAS 160

Query:   247 ----VLTGWV--AQSAR 257
                 VL GW+   Q AR
Sbjct:   161 LANLVLLGWLLGVQYAR 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      257       244   0.00098  113 3  11 22  0.39    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.81u 0.07s 18.88t   Elapsed:  00:00:02
  Total cpu time:  18.81u 0.07s 18.88t   Elapsed:  00:00:02
  Start:  Thu May  9 18:30:33 2013   End:  Thu May  9 18:30:35 2013

GO:0015297 "antiporter activity" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_IX0426	hypothetical protein (553 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.2315.1	hypothetical protein (458 aa)			•						0.417
	gw1.II.1185.1	hypothetical protein (525 aa)			•						0.416
	estExt_Genewise1_v1.C_LG_XII0217	hypothetical protein (451 aa)			•						0.412
	gw1.125.175.1	hypothetical protein (470 aa)			•						0.411

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	2e-33
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	1e-13
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	5e-10
pfam01554	161	pfam01554, MatE, MatE	2e-07
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	7e-07
PRK10367	441	PRK10367, PRK10367, DNA-damage-inducible SOS respo	8e-06
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	3e-05
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	4e-05
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	1e-04
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-04
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	3e-04
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	7e-04
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	0.001
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	0.002
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	0.002

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score =  125 bits (316), Expect = 2e-33
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
           +EI+    PA    I  PL+ L+DTAV+G  GS+  L A+  GT + + + ++F FL + 
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG 62

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
           T+ LVA +L   D+ E    +   L + LA G  +++        AL     S  V    
Sbjct: 63  TTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAV--AA 120

Query: 232 AANKYVQIRGLAWPAVLTGWVAQSA 256
            A +Y++IR L  PAVL  +VA   
Sbjct: 121 LARQYLRIRILGAPAVLLNYVATGW 145

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA 171
           +K ++K   P     +   L  L+DT ++G   +  LAA+G    +   +  IF+ L   
Sbjct: 16  LKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTG 75

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
           T+ LVA ++   D+ + +  +   L + L  G  + I   FF    L        V  L 
Sbjct: 76  TTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEV--LE 133

Query: 232 AANKYVQIRGLAWPAVL 248
            A +Y++I  L  P  L
Sbjct: 134 LAAEYLRIILLGAPFAL 150

Length = 455

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 130 PLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189
           PL+ L+DTA +G    ++LAA+  G+ +   +  I M L  AT+ LVA ++   +   + 
Sbjct: 10  PLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLG 69

Query: 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLT 249
            Q    L + L  G  +L+   FF    LS       V     A  Y++I  L  PA L 
Sbjct: 70  RQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEV--AELAQDYLRILILGIPAYLL 127

Query: 250 GWVAQSA 256
            +V +  
Sbjct: 128 NFVLRGF 134

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190
           L SLIDT  +G   ++ LAA+     +   +    + LS A + LV  +L   +      
Sbjct: 11  LYSLIDTLFVGHLGAVALAAVSIANSIASLIFMFLLGLSTALTTLVGQALGAGNFKRAGV 70

Query: 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTG 250
            +   L + L     + +    F    LS FT  +   +L  A+KY++I  L  P +   
Sbjct: 71  ALRQGLILSLLISLPIALLIILFREPILSLFTQDE--EVLELASKYLRILALGIPFLSLQ 128

Query: 251 WVAQSA 256
           +V    
Sbjct: 129 FVLSGF 134

The MatE domain. Length = 161

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 49.4 bits (119), Expect = 7e-07
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA- 171
           + I     P     +   L+ L+D  ++G+  +  +AA+G  T        +++ L +  
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLAT------QVLWLLLVLNM 54

Query: 172 -----TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKN 226
                T  LV+ S    D    +  +   L + L     + +    F    L        
Sbjct: 55  ALGTGTVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPE 114

Query: 227 VHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
           V  +  A  Y++I  L  P      V  +A
Sbjct: 115 V--IALALTYLRIVLLGIPFFFLSLVGNAA 142

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 127 ICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFM---FLSIATSNLVATSLTN 182
           I  PL+ L+DTAVIG   S + L  +  G       S++FM   FL ++T+ L A +   
Sbjct: 23  ITVPLLGLVDTAVIGHLDSPVYLGGVAVGATA---TSFLFMLLLFLRMSTTGLTAQAFGA 79

Query: 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGL 242
           ++   +   +   L + L  G  + +        AL    GS+ V  L  A ++++IR L
Sbjct: 80  KNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAV--LEQARRFLEIRWL 137

Query: 243 AWPA-----VLTGWV--AQSAR 257
           + PA     VL GW+   Q AR
Sbjct: 138 SAPASLANLVLLGWLLGVQYAR 159

Length = 441

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF- 167
              +KEI++   P     +   L  L+ T  + +  ++ LAA G    +    S+IFM  
Sbjct: 237 RKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRI---ASFIFMPP 293

Query: 168 --LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK 225
             ++ A + LV  +L   +    +    + L + L     + +    F    +S FT   
Sbjct: 294 FGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFT--T 351

Query: 226 NVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
           +  ++  A   + I  L  P     +V    
Sbjct: 352 DPEVIALAVILLLIAALFQPFDGIQFVLSGV 382

Length = 455

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 22/101 (21%), Positives = 45/101 (44%)

Query: 127 ICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186
           +   L +L+DT  +G+     LAA+G    L   +  + + LS+ TS L++ ++   D+ 
Sbjct: 9   LLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIALLIALGVGLSVGTSALISQAIGAGDEE 68

Query: 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV 227
           + +  +   + + +  G  +     FF    LS     + V
Sbjct: 69  KARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEV 109

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190
           L+  IDT ++ + S   +AA+G    +   +  IF F+S  TS L+A  L  +DK + + 
Sbjct: 21  LLGTIDTFMLSRYSDNAVAAVGVANQILFLLILIFSFISTGTSILIAQYLGAKDKKKARQ 80

Query: 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLA 243
              V L   L  G    +   FFG + L          +L   + Y++I G +
Sbjct: 81  IAGVALLFNLLLGLVFSLLLLFFGAELLRLM--GLPPELLALGSTYLRIVGGS 131

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLS---IATSNLVATSLTNRDKNE 187
            M  +DT + G+  + +LAA+  G+ L      +F F     +A + LVA +    D+  
Sbjct: 21  AMGFVDTVMAGRLGADDLAAVALGSSL---WFPVFTFGMGLLLAVTPLVAQAHGAGDRRR 77

Query: 188 VQHQISVLLFVGLACGF-SMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPA 246
           ++  +   L++ L      ML+   +     L        V  +  A  Y+       P 
Sbjct: 78  IRRAVRQGLWLALLLSLPLMLLL--WLAPPILPLMGQEPEVAAI--ARGYLLALAWGIPP 133

Query: 247 VL 248
            L
Sbjct: 134 AL 135

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA 171
            +EI+K   P     +   +M   D A +G+ S + LAA GP  VL   +  +F  LS  
Sbjct: 4   YREILKIALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPAGVLYFAILMLFFGLSSG 63

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
               VA        + +   +   L+  L     + + +             S    +  
Sbjct: 64  VQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSP--EVQA 121

Query: 232 AANKYVQIRGLAWPAVL 248
              +Y +IR L  P  L
Sbjct: 122 LEVEYFRIRILGAPFSL 138

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 5/150 (3%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMF 167
              ++ +++   P+        L  LI  A++   G +  LAA      +        + 
Sbjct: 215 LELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPALG 274

Query: 168 LSIATSNLVATSLTNRDKNEV-QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKN 226
           L+ A   +V  +L   + +   +     LL   L      L+    F    LS FT    
Sbjct: 275 LAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLIL-LFPEPILSLFTNDPE 333

Query: 227 VHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
              L  A  Y++I  + +  V  G+V Q+ 
Sbjct: 334 --FLELAVSYLRILAIYYLFVGIGYVLQAG 361

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 131 LMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189
           L +L+D  ++GQ      LAA+  G+ +   ++ I M LS+  + L++  +  +D+ + +
Sbjct: 21  LYNLVDLLIVGQFLGVAALAAVSNGSPIIFLLTAIGMGLSMGGTILISQYIGAKDEEKAK 80

Query: 190 HQISVLLFVGLACGFSMLIFTKFF 213
             +  LL + L  G  + I    F
Sbjct: 81  KAVGTLLVLFLILGIVLTILGLLF 104

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 25/114 (21%), Positives = 39/114 (34%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFL 168
           W  +K ++K   P     I   L   +   ++ +  S+ LAA      +   +       
Sbjct: 212 WEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGF 271

Query: 169 SIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
            IA S LV  +L   D    +    V L + L  G  + I    F       FT
Sbjct: 272 GIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFT 325

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDN-MSYIFMF 167
              +K+I+K   P+ G  +   L   + TA I +  +  LAA         N   ++F+F
Sbjct: 224 KKLLKKILKIGLPSAGEELSYNLSQTVITAFIARLGTAALAAR----TYASNISMFVFLF 279

Query: 168 ---LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
              +  AT  +V   +   D +E   ++   L +GL    ++ +    F    L  FT
Sbjct: 280 SLAIGQATQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFT 337

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.89
PRK00187	464	multidrug efflux protein NorA; Provisional	99.88
PRK10189	478	MATE family multidrug exporter; Provisional	99.87
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.87
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.86
PRK00187	464	multidrug efflux protein NorA; Provisional	99.85
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.84
PRK10189	478	MATE family multidrug exporter; Provisional	99.84
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.83
PRK01766	456	multidrug efflux protein; Reviewed	99.83
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.82
PRK01766	456	multidrug efflux protein; Reviewed	99.81
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.77
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.63
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.63
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.53
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.32
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.31
PRK15099	416	O-antigen translocase; Provisional	99.29
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.14
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.02
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.02
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.99
COG2244	480	RfbX Membrane protein involved in the export of O-	98.73
PRK10459	492	colanic acid exporter; Provisional	98.68
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.64
PRK15099	416	O-antigen translocase; Provisional	98.47
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	97.8
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	97.45
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.18
COG0728	518	MviN Uncharacterized membrane protein, putative vi	96.56
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.01
PRK10459	492	colanic acid exporter; Provisional	95.97
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	95.94
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	95.82
COG2244	480	RfbX Membrane protein involved in the export of O-	94.95
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	91.54

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.89  E-value=1.8e-21  Score=187.03  Aligned_cols=147  Identities=24%  Similarity=0.298  Sum_probs=141.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~  187 (257)
                      .++..|+++++++|++++++.+++++++|++|+||+|++++||+++++++.++.+.+..|++.|+++++||++|+||+++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +++...++++++++++++++++.+.+.++++.+++.  ++|+.+.+.+|+++..++.|+..+++++.+.
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~  158 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGI  158 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998  8889999999999999999999999987763

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.88  E-value=5.7e-21  Score=183.37  Aligned_cols=149  Identities=18%  Similarity=0.164  Sum_probs=140.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157          106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~  185 (257)
                      .++++.+|+++++++|.+++++++.+.+++|+.++|++|++++||++++.++.++.+.+..|++.|+++++||++|+||+
T Consensus         3 ~~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          3 VPPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      ++++++.++++.++++++++..++++ +.++++++|+.  |+|+.+.+.+|+++..+++|+..+++++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l  151 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFT  151 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877755 67899999999  99999999999999999999999999887753

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.87  E-value=6.7e-21  Score=183.85  Aligned_cols=151  Identities=19%  Similarity=0.265  Sum_probs=141.7

Q ss_pred             cccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025157          104 ADQSIWNQ--IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLT  181 (257)
Q Consensus       104 ~~~~~~~~--~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lG  181 (257)
                      .++..|+.  .|+++++++|++++++++.+++++|+.++|++|++++||++++.++.++.+.+..|+++|+++++||++|
T Consensus        18 ~~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~G   97 (478)
T PRK10189         18 AKRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLG   97 (478)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444554  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          182 NRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       182 agd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~--~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +||+|++++..++++.++++++++++++.+.++++++.+|+  .  |+|+.+++.+|+++..++.|+..+++++++.
T Consensus        98 a~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~  172 (478)
T PRK10189         98 KRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDA--TPEVKALALTYLELTVWSYPAAAITLIGSGA  172 (478)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999995  5  8999999999999999999999999887764

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.87  E-value=1.6e-20  Score=179.52  Aligned_cols=147  Identities=24%  Similarity=0.334  Sum_probs=139.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~l-G~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      .++..|+++++++|++++++++.+++++|+.++|++ |++++||++++.++.++.+.+.+|++.|+++++||++|+||+|
T Consensus         4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            356689999999999999999999999999999997 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      ++++..++++++++++++++.++...+.++++.+++.  |+|+.+.+.+|+++..++.|+..++.++++.
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~  151 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGW  151 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888899999999999  9999999999999999999999998887764

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.86  E-value=2.3e-20  Score=179.31  Aligned_cols=152  Identities=17%  Similarity=0.130  Sum_probs=147.1

Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 025157          104 ADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNR  183 (257)
Q Consensus       104 ~~~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGag  183 (257)
                      ..+.+++..|+++++|+|.+++++.+.....+.+.+++++|++++||++++.++.++.+++..|+++|+++++||++|||
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~  311 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAG  311 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       184 d~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      |+|++++..+.++.++++++++++++++++++++.++|+.  |+|+.+.+..|+++..+..++.+++.++.|+|
T Consensus       312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~l  383 (455)
T COG0534         312 NYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFDGIQFVLSGVL  383 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999  99999999999999999999999999988864

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.85  E-value=1.4e-19  Score=173.77  Aligned_cols=151  Identities=14%  Similarity=0.030  Sum_probs=141.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157          106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~  185 (257)
                      +.+++..|+++++++|.+++++.+.....+|+.+++++|++++||++++.++..+.+.+..|++.|+++++||++|+||+
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~  308 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRL  308 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---HILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~---ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      |++++..+.++.+++++++++++++++++++++++|+.+.|+   |+.+.+..|+++.++++++..++.++.++
T Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~  382 (464)
T PRK00187        309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGA  382 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            999999999999999999999999999999999999631133   79999999999999999999999988775

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.84  E-value=1.4e-19  Score=173.09  Aligned_cols=147  Identities=16%  Similarity=0.136  Sum_probs=139.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~l-G~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      +++..|+++++++|.+++++.+.+++++|+.++|++ |++++||++++.++.++.+.+..+++.|+++++||++|+||+|
T Consensus         7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   86 (453)
T PRK09575          7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE   86 (453)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence            456789999999999999999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      ++++..+++++++++++++++++.+.++++++.+|+.  |+++.+.+.+|+++..++.|+..+++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~  154 (453)
T PRK09575         87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFL  154 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998  9999999999999999999999888876653

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.84  E-value=2.6e-19  Score=172.86  Aligned_cols=149  Identities=13%  Similarity=0.060  Sum_probs=143.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      .+++.+|+++++|+|..++++...+..++.+.+++++|++++||++++.++..+.+++..|++.|+++++||++|+||++
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~  332 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIA  332 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      ++++..+.++.++++++++++++++++++++.++|++  |+|+.+.+..|+++.++..|+.+++++..|++
T Consensus       333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l  401 (478)
T PRK10189        333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQ--DPDVKHVVKILIWLNALFMPIWAASWVLPAGL  401 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            9999999999999999999999999999999999998  99999999999999999999999999988764

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.83  E-value=5.1e-19  Score=169.21  Aligned_cols=151  Identities=10%  Similarity=0.110  Sum_probs=141.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 025157          106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS-LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRD  184 (257)
Q Consensus       106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~-~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd  184 (257)
                      +.+++..|+++++|+|..+++..+.+...+.+.+++++|+ +++||++++.++.++.+.+..|++.|+++++||++|+||
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~  306 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ  306 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence            3567889999999999999999999999999999999885 689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       185 ~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      +|++++..+.++.++++.+++++++++.++++++++|+.+ |+|+.+.+..|+++..+++|+.+++++..++|
T Consensus       307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~-~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~  378 (453)
T PRK09575        307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSG-DSELIAETIVGIRLHLFAMFLDGFLVLASAYF  378 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999842 78999999999999999999999998877653

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.83  E-value=8.1e-19  Score=167.12  Aligned_cols=149  Identities=16%  Similarity=0.130  Sum_probs=143.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      .+++..|+++++++|.+++++.+.+...+++.+++++|++++||++++.++.++.+.+..|++.|+++++||++|+||++
T Consensus       233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~  312 (456)
T PRK01766        233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTL  312 (456)
T ss_pred             CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      ++++..+.++.++++++++++++++.+++++.++|+.  |+++.+.+..|+++..+..++.+++.+++|++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l  381 (456)
T PRK01766        313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD--DPEVVALASHLLLFAALFQFSDAIQVIGSGAL  381 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            9999999999999999999999999999999999998  99999999999999999999999999988764

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.82  E-value=1.5e-18  Score=165.96  Aligned_cols=134  Identities=10%  Similarity=-0.018  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH
Q 025157          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ  189 (257)
Q Consensus       110 ~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~  189 (257)
                      +..|+++++|+|..++++.+.....+.+.+++++|++++||++++.++.++.+++..|+++|+++++||++|+||+|+++
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~  308 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL  308 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHH
Q 025157          190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWP  245 (257)
Q Consensus       190 ~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p  245 (257)
                      +..+.++.+++++++++++++++++++++++|++  |+|+.+.+..|+++.++..+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~--d~~v~~~~~~~l~i~~~~~~  362 (441)
T PRK10367        309 DVWRAACRQSGIVALLFSLVYALAGEHIIALLTS--LPQIQQLADRYLIWQVILPL  362 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998  99999999999999887644

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.81  E-value=2.3e-18  Score=164.03  Aligned_cols=148  Identities=18%  Similarity=0.145  Sum_probs=140.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      ..++.+|+++++++|.+++++...+.+++|+.++|++|++++||++++.++..+.+.+..|++.|+++++||++|+||++
T Consensus         6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~   85 (456)
T PRK01766          6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE   85 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence            34677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      ++++..++++.++++++++++++++.++++++.+++.  |+++.+.+.+|+++..++.|+..+..++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~  153 (456)
T PRK01766         86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSF  153 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999989999999999998  9999999999999999999999988887664

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.77  E-value=1.6e-19  Score=147.67  Aligned_cols=135  Identities=19%  Similarity=0.253  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 025157          121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL  200 (257)
Q Consensus       121 P~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lal  200 (257)
                      |.+++++++.+...+|+.+++++|++++||++++.++.++...+..|++.|+++++||++|+||++++++..+.++.+++
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       201 ii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      +++++++++.+++.++++++|+.  |+|+.+.+.+|+++..++.|+..+..+.++.+
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (162)
T PF01554_consen   81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGIL  135 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred             hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999  99999999999999999999999999887653

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.63  E-value=2e-14  Score=130.80  Aligned_cols=133  Identities=21%  Similarity=0.200  Sum_probs=126.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157          106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~  185 (257)
                      +.+++..|+++++++|.+++++...+...+|+.+++++|++++++++++.++.++...+..+++.+..+.+++++|+||+
T Consensus       209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (342)
T TIGR00797       209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDP  288 (342)
T ss_pred             CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHH
Q 025157          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIR  240 (257)
Q Consensus       186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~  240 (257)
                      +++++..++++.+.+++++++++++++++++++++|+.  |+++.+++..|+.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       289 KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998  999999999999764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.63  E-value=2.3e-14  Score=130.47  Aligned_cols=134  Identities=29%  Similarity=0.367  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 025157          121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL  200 (257)
Q Consensus       121 P~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lal  200 (257)
                      |.++++++..++..+|+.+++++|++++++++++.++.++...+..|+++|..+.++|++|++|+|++++..+.++.+.+
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       201 ii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +++++++++++++++++..+++.  |++..+.+..|+++..++.++..++.+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~  134 (342)
T TIGR00797        81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGF  134 (342)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987  8899999999999999999999988876653

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.53  E-value=1.2e-12  Score=125.47  Aligned_cols=150  Identities=13%  Similarity=-0.038  Sum_probs=134.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCH
Q 025157          107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~-i~~gls~a~s~lVsq~lGagd~  185 (257)
                      .+++..|+++++++|..++++.+.+...+|+.+.+.+|+.++++++.+.++.++... +..+++.+..|.+||++|+||+
T Consensus       217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~  296 (502)
T TIGR01695       217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW  296 (502)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            356778999999999999999999999999998667999999999999999988765 5778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~--d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +++++..++++.+..++++++++.+++++++++.++.+.+  |+|....+..++++.+++.++..++.++.++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  369 (502)
T TIGR01695       297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRA  369 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999986521  4577888999999999999999988887654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.32  E-value=1.4e-10  Score=110.52  Aligned_cols=143  Identities=15%  Similarity=0.158  Sum_probs=121.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c---C---hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 025157          107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-G---S---SLELAALG----PGTVLCDNMSYIFMFLSIATSNL  175 (257)
Q Consensus       107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-l---G---~~aLAA~g----ia~~i~~l~~~i~~gls~a~s~l  175 (257)
                      .+++.+|+++++++|.+++++.+.+...+|+.++|+ +   |   .++.+.+|    ++.++..+...+..+++.+..|.
T Consensus       219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~  298 (488)
T TIGR02900       219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPD  298 (488)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999987 3   2   22334433    44567777777788999999999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157          176 VATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS  255 (257)
Q Consensus       176 Vsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g  255 (257)
                      ++|++|+||++++++..++.+.++.++++++++.+..++++++.++..  +++    +..|+++.+++.++..++.+..+
T Consensus       299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~----~~~~l~i~~~~~~~~~~~~~~~~  372 (488)
T TIGR02900       299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD----AGNFIRVLAPSFPFLYFSAPLQS  372 (488)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999889999999999876  543    57889999999999888777654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.31  E-value=2.5e-11  Score=117.50  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDN-MSYIFMFLSIATSNLVATSLTNRDKNE  187 (257)
Q Consensus       109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l-~~~i~~gls~a~s~lVsq~lGagd~~~  187 (257)
                      +.+.|++++++.|+++..+.+....++++.++||+|+.++|+.++++...+. .+.+..|+..+..++++|++|+++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            6788999999999999999999999999999999999999999999999886 688899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA  253 (257)
Q Consensus       188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~  253 (257)
                      ...+.+++..+....+++...+ |.+.++|+..+++  |+++...+..|.+......+.......+
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l  166 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPL  166 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHH
Confidence            9999999999999988888776 5678999999999  9999999999999998888877766554

>PRK15099 O-antigen translocase; Provisional

Probab=99.29  E-value=4.9e-10  Score=105.62  Aligned_cols=136  Identities=13%  Similarity=-0.003  Sum_probs=115.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccC
Q 025157          106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIG-QGSSLELAALGPGTVLCD-NMSYIFMFLSIATSNLVATSLTNR  183 (257)
Q Consensus       106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig-~lG~~aLAA~gia~~i~~-l~~~i~~gls~a~s~lVsq~lGag  183 (257)
                      +.+++..|+++++|+|.+++++...+...+|+.+++ ++|++++++++++.++.. +...+..+++++..|.++|+   +
T Consensus       208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~  284 (416)
T PRK15099        208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T  284 (416)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            456888999999999999999999999999999997 699999999999999977 45889999999999999995   7


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 025157          184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVL  248 (257)
Q Consensus       184 d~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~  248 (257)
                      |+++.++..+..+.+...+++++++++++++++++.++.+  |+ - +.+.+++++.+++..+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g--~~-~-~~~~~~~~~l~~~~~l~~  345 (416)
T PRK15099        285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFS--NK-F-TAMRDLFAWQLVGDVLKV  345 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HH-H-HHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999998888888999999999987  33 1 113445555555444433

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.14  E-value=2.7e-09  Score=101.76  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCHHHHHHHHH
Q 025157          116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS  193 (257)
Q Consensus       116 l~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~-~gls~a~s~lVsq~lGagd~~~a~~~~~  193 (257)
                      +|-+.|.+++++...+.+++|+.++++ +|+++.++++.+.++..+...+. .|++.+.+..++|..|++|++++++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            356789999999999999999999999 79999999999999988887765 5899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157          194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS  255 (257)
Q Consensus       194 ~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g  255 (257)
                      +++++.++++++++++++++.+.+..++..  |++..    .|+++..+..|+..+..+.++
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~~----~~l~~~~~~~~~~~~~~~~~~  137 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERSL----YSLLVICPAMPFIALSSVLKG  137 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888899998887766  55542    467777778887776665544

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.02  E-value=1.4e-08  Score=98.42  Aligned_cols=145  Identities=14%  Similarity=0.001  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS--SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG--~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      .+.++.++++++|.+++-.++-....+.....|.++  ..++++.+++.++....+++..|++.|+++.|+..+|+|+.+
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~  322 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK  322 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence            556789999999999999998888888899999987  489999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS  255 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g  255 (257)
                      ++|.....++.+++++++..+..++.+++.+..+|+.  |+|+.+...+...+.+....+...+.++.|
T Consensus       323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~--~~ev~~~va~~~pll~~~~~~~~~q~v~~G  389 (473)
T KOG1347|consen  323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTN--SKEVLDLVADLTPLLALSILLNALQAVLSG  389 (473)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence            9999999999999999999999999999999999998  999999999999999999999888888776

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.02  E-value=5.2e-08  Score=93.78  Aligned_cols=148  Identities=14%  Similarity=0.004  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHH
Q 025157          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNE  187 (257)
Q Consensus       109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~  187 (257)
                      .+..|++++...|.++......+..++|..+.+.+++.++++...+.++..+...+ ...+++..-|..++..-+||.++
T Consensus       194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~  273 (451)
T PF03023_consen  194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE  273 (451)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            45689999999999999999999999999999999999999999999999998755 56899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~--~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      .++..++++...+.+.++.++.++.+++++++++-  +.-|.|-.+....+++++++++|+..++.++.-+
T Consensus       274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~  344 (451)
T PF03023_consen  274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRV  344 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999773  2226677788999999999999999998877644

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR01695 mviN integral membrane protein MviN

Probab=98.99  E-value=3.5e-08  Score=94.57  Aligned_cols=137  Identities=13%  Similarity=0.036  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCH-HHHH
Q 025157          115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLEL-AALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDK-NEVQ  189 (257)
Q Consensus       115 il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aL-AA~gia~~i~~l~~~i~~--gls~a~s~lVsq~lGagd~-~~a~  189 (257)
                      ++|-+.=.++.++...+.+++|..++++ +|++++ ++++++.++.+++..+..  |++.+   ++.+..|+++. |+++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~~~~~~   78 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKKEKEAR   78 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhhhhHHH
Confidence            3455566778889999999999999999 899999 799999999887776654  45555   45555555544 5888


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhc--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          190 HQISVLLFVGLACGF-SMLIFTKFFGMQALSAF--TGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       190 ~~~~~~l~lalii~l-l~~lll~~~~~~Il~lf--~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +...+++....+++. ++.++.+++++++..++  +.  |++..+.+..|+++..++.|+..+..+.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~  146 (502)
T TIGR01695        79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGF--ADETRSLAVSLTRIMFPYLLLISLAAVFGGI  146 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            878777776665544 45677778899999988  44  7788899999999999999999998887764

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.73  E-value=6.5e-07  Score=85.57  Aligned_cols=142  Identities=14%  Similarity=0.105  Sum_probs=124.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~  186 (257)
                      .++..|++++.++|..+..+...+.+.+|+.++|. +|+++++-++.+.++......+...++...-|.+++.+.++|.+
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~  287 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK  287 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            36789999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA  253 (257)
Q Consensus       187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~  253 (257)
                      +.++..++.+.+...++++..+.+..++++++.++-+  ++..  .+...+.+.+++.++..+....
T Consensus       288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg--~~~~--~~~~~l~il~~~~~~~~~~~~~  350 (480)
T COG2244         288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFG--EKYA--SAAPILQLLALAGLFLSLVSLT  350 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecC--Cccc--chhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887766  2221  1666667777666666555443

>PRK10459 colanic acid exporter; Provisional

Probab=98.68  E-value=1.7e-06  Score=83.20  Aligned_cols=140  Identities=16%  Similarity=0.058  Sum_probs=114.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFM-FLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~-gls~a~s~lVsq~lGagd~  185 (257)
                      +++..|++++.++|....++...+...+|..++|. +|+++++.++.+.++.++...... .++...-|..++.  ++|.
T Consensus       202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~  279 (492)
T PRK10459        202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT  279 (492)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence            46778999999999999999999999999999999 899999999999999887554433 4566677888875  6788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA  253 (257)
Q Consensus       186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~  253 (257)
                      ++.++...+.+.+...+++++.+.+.+++++++.++-+  ++  ...+...+++.++...+..+....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g--~~--~~~a~~~l~il~~~~~~~~~~~~~  343 (492)
T PRK10459        280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFG--EK--WNSAIPILQLLCIVGLLRSVGNPI  343 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--hh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888888899999887765  32  245668888888777766555443

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.64  E-value=4.6e-06  Score=81.66  Aligned_cols=147  Identities=14%  Similarity=-0.046  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCHHHH
Q 025157          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRDKNEV  188 (257)
Q Consensus       110 ~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~-~i~~gls~a~s~lVsq~lGagd~~~a  188 (257)
                      ...|++++...|..+......+..++|+.+.+.+.+.+++.+..+..+..+.. .+..++++..-|..|++...+|.++.
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            67899999999999999999999999999999999999999999999999998 45678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG--SKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       189 ~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~--~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      ++...+++.+.++++++.++.+.++++++++.+-.  .-+++-...+.+-+..++++.|++.+.-++.-+
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~  378 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRV  378 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999997732  114555677888899999999999887766543

>PRK15099 O-antigen translocase; Provisional

Probab=98.47  E-value=5.3e-06  Score=78.25  Aligned_cols=115  Identities=7%  Similarity=-0.028  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025157          120 GPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQISVLLF  197 (257)
Q Consensus       120 iP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~  197 (257)
                      .=.....+...+.+++.+.++.+ +|+++.+.++....+..+...+ ..|++.|.+..++|+  ++|++++++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~   85 (416)
T PRK15099          8 LWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSA   85 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHH
Confidence            33445566666677777778888 8999999999999888877666 778888889999998  7899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHH
Q 025157          198 VGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQI  239 (257)
Q Consensus       198 lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I  239 (257)
                      ++++.+++++++++.+.+++..++..  +++ ......|+.+
T Consensus        86 l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~  124 (416)
T PRK15099         86 MVLGFSTLLALVFLLAAAPISQGLFG--HTD-YQGVVRAVAL  124 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC--Chh-HHHHHHHHHH
Confidence            99999999999999999999998877  665 3333444443

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=97.80  E-value=0.001  Score=64.16  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=97.2

Q ss_pred             cChH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025157          143 GSSL-ELAALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALS  219 (257)
Q Consensus       143 lG~~-aLAA~gia~~i~~l~~~i~~--gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~  219 (257)
                      +|+. +..|+-++.++-++...+..  +++.+..|...+.. +++++++++..+..+.+..+++++++++.++++++++.
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4543 45688889999888876554  48999999999999 89999999999999999999999999999999999999


Q ss_pred             hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157          220 AFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS  255 (257)
Q Consensus       220 lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g  255 (257)
                      ++...-|++..+.+.+++++..+..++..+..+..+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a  119 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSA  119 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            996544889999999999999999999998887765

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=97.45  E-value=0.014  Score=54.05  Aligned_cols=139  Identities=12%  Similarity=0.045  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS---LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~---~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~  185 (257)
                      ...+++++++-+|..++.++..+.--+.|.-+++..+   +.+|++|++..+.-++..+...+-..+..++.+     ++
T Consensus         7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r   81 (345)
T PF07260_consen    7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR   81 (345)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence            3457899999999999999999999999998987443   449999999999999999998888877766544     33


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHH-HhHHH-HHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          186 NEVQHQISVLLFV-GLACGFSMLIFTK-FFGMQ-ALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       186 ~~a~~~~~~~l~l-alii~ll~~lll~-~~~~~-Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +  ++.....+.. +.+..++..++.+ .++.. +-.+++.  ++++.+.++..+.++.+.-.+.++....+|.
T Consensus        82 s--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgV--s~~va~~tr~a~l~L~llPfl~alr~~~qGI  151 (345)
T PF07260_consen   82 S--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGV--SPSVAEKTRRAFLYLTLLPFLDALRWIHQGI  151 (345)
T ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            2  2222222222 2222222232222 22333 3456787  9999999999999999999999999988874

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.18  E-value=0.0047  Score=53.40  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATS  179 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~  179 (257)
                      +++..|++++.++|..+..+...+..-+|..++++ .|+++++-++++.++......+...+.....|.+++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL  272 (273)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37789999999999999999999999999999999 8999999999999999999999999999999998875

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=96.56  E-value=0.37  Score=47.69  Aligned_cols=142  Identities=8%  Similarity=-0.046  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCHHHHH
Q 025157          114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSS-LELAALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDKNEVQ  189 (257)
Q Consensus       114 ~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~-~aLAA~gia~~i~~l~~~i~~--gls~a~s~lVsq~lGagd~~~a~  189 (257)
                      .++|-++=.....++.-+.+++--.+++. +|+ ....|+.++.++=++.--++-  .++++-.|.-.+...++..++++
T Consensus         8 sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~   87 (518)
T COG0728           8 SLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAAR   87 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHH
Confidence            34444444444444444555554444554 887 455799999999998877664  37899999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157          190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQS  255 (257)
Q Consensus       190 ~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~-d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g  255 (257)
                      +.......+...+.++++++..++.++++++...+- |++....+....+|..+..++..+..+..+
T Consensus        88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~a  154 (518)
T COG0728          88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGA  154 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777766677777888888889999995554421 233333677888998888888877766554

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.01  E-value=0.087  Score=45.15  Aligned_cols=65  Identities=17%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025157          114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVAT  178 (257)
Q Consensus       114 ~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~-~i~~gls~a~s~lVsq  178 (257)
                      +.++.++|..+.++...+..-+|..+++. +|.++++.++++.++..... .+..+++....|.++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            48999999999999999999999999999 99999999999999999888 8888999988888876

>PRK10459 colanic acid exporter; Provisional

Probab=95.97  E-value=0.17  Score=48.60  Aligned_cols=113  Identities=12%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 025157          122 ATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVG  199 (257)
Q Consensus       122 ~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~-~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~la  199 (257)
                      ..+.++...+..++...++++ +|+++...++.+..+..+...+. .|++.+.    .|.   +|  +.++.....+++.
T Consensus        14 ~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~--~~~~~~~~~~~~~   84 (492)
T PRK10459         14 TAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QD--ISHLQLSTLYWLN   84 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---cc--CCHHHHHHHHHHH
Confidence            456666777777777888888 89999999999988888766543 4566544    221   11  1123345556667


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 025157          200 LACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTG  250 (257)
Q Consensus       200 lii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~  250 (257)
                      ++.++++.++.+.+.+.+..+++.   ++.    ..++.+.++..++..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~----~~~~~~~~~~~~~~~~~  128 (492)
T PRK10459         85 VGLGIVVFVLVFLLSPLIADFYHN---PEL----APLIKTLSLAFVIIPIG  128 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC---hhh----HHHHHHHHHHHHHHHHh
Confidence            777777777777777777777664   332    23445555444444433

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=95.94  E-value=0.51  Score=40.33  Aligned_cols=72  Identities=13%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157          132 MSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLI  208 (257)
Q Consensus       132 ~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~l  208 (257)
                      .+++...+++| +|.++.+.++....+..+...+ ..|+..+..    + ..++++++.++.....+...+++++++.+
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAI   76 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888 8999999999999888877765 344444332    3 34467777777777777665555554443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=95.82  E-value=1.1  Score=38.54  Aligned_cols=84  Identities=17%  Similarity=0.068  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025157          120 GPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQISVLLF  197 (257)
Q Consensus       120 iP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~  197 (257)
                      .=..+.++...+.+++...++.+ +|+++.+-+++...+..+...+ ..|++.+..-.+++...+  .++.+......+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~   83 (273)
T PF01943_consen    6 LWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLF   83 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHH
Confidence            33456667777777888888888 8999999999999998877765 677888887777766544  3444555555544


Q ss_pred             HHHHHHHH
Q 025157          198 VGLACGFS  205 (257)
Q Consensus       198 lalii~ll  205 (257)
                      ..++.+++
T Consensus        84 ~~~~~~~i   91 (273)
T PF01943_consen   84 LLLIFSLI   91 (273)
T ss_pred             HHHHHHHH
Confidence            44444333

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=94.95  E-value=0.48  Score=45.21  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCHHHHH
Q 025157          112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQ  189 (257)
Q Consensus       112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~-~gls~a~s~lVsq~lGagd~~~a~  189 (257)
                      .+++.|-+.=..+.++...+..++....+++ +|+++.+.++.+..+..+...+. .|+..+.+-.+++....+++...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~   84 (480)
T COG2244           5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI   84 (480)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence            3556666666677777777788888888888 89999999999999998888877 789999998899888887777777


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHH
Q 025157          190 HQ-ISVLLFVGLACGFSMLIFT  210 (257)
Q Consensus       190 ~~-~~~~l~lalii~ll~~lll  210 (257)
                      .. ....+.+.++.+++...+.
T Consensus        85 ~~~~~~~l~~~~~~~~~~~~~~  106 (480)
T COG2244          85 LLSVLLLLLLALILLLLLLLIA  106 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            76 6666666555555544443

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=91.54  E-value=2.6  Score=42.03  Aligned_cols=142  Identities=12%  Similarity=0.065  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCH--
Q 025157          112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ---GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDK--  185 (257)
Q Consensus       112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~---lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~--  185 (257)
                      .++++++......+.+.-.+.+--|.+++..   ...++.+.+++++++-+++-=+ +.=+=-+.-.+-++.+..++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            4788899999999999998888889888887   4567788999999887766433 333556666677777655432  


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157          186 -------NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS  255 (257)
Q Consensus       186 -------~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g  255 (257)
                             +++.+.....+.+...+|+++.++.....+.++.++.+  +.-.-..+..-++..++-+|++++|-+..+
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g--~~w~~~~~~~~l~~yc~yi~~la~NGi~Ea  406 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGG--SRWSSTSAPSLLRAYCYYIPFLAINGITEA  406 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhh--hcccCCCchHHHHHHHHHHHHHHHccHHHH
Confidence                   45777888889999999998888888889999999876  222223346777888888999988876543

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	5e-07

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 3/143 (2%)

Query: 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF 165
                +   ++K   P     +    M  +DT + G  S++++AA+     +        
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64

Query: 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK 225
           + L +A   +VA       ++++  ++   L + L     ++    F     +      +
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVL-FQTQFIIRFMDVEE 123

Query: 226 NVHILPAANKYVQIRGLAWPAVL 248
            +        Y+     A PA L
Sbjct: 124 AMATK--TVGYMHAVIFAVPAYL 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.69
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.64

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.69  E-value=1.2e-16  Score=148.50  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=141.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157          106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK  185 (257)
Q Consensus       106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~  185 (257)
                      +.+++..|+++++++|.+++++.+.+...+|+.+++++|++++|+++++.++.++...+..+++.+..+.+++++|+||+
T Consensus       231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~  310 (460)
T 3mkt_A          231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDT  310 (460)
T ss_dssp             SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA  256 (257)
Q Consensus       186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga  256 (257)
                      +++++..+.++.+++++++++++++++++++++.+|..  |+++.+.+..++++.+++.++..++.+..++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  379 (460)
T 3mkt_A          311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGS  379 (460)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998  8999999999999999999999988877654

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.64  E-value=3.9e-16  Score=144.90  Aligned_cols=147  Identities=15%  Similarity=0.117  Sum_probs=137.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (257)
Q Consensus       108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~  187 (257)
                      .++..|++++.++|.+++++...+.+.+|+.++|++|++++++++++.++..+...+..|++.+..+.++|++|++|+++
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~   86 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHK   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR  257 (257)
Q Consensus       188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf  257 (257)
                      +++..+.++.+.++++++++++ +.+.++++.+++.  |+++.+.+..|+++..++.++..+..+..+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l  153 (460)
T 3mkt_A           87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFT  153 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987765 6788999999988  99999999999999999999999988877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00