Citrus Sinensis ID: 025215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccHccccccccccccccccc
Coil and Loop (DISEMBL)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVnqlrslpegtsalglpvatgaYLYTLIFVTVPSLASVFNeyalksqydtsiyhqnlfLYGYGAIFNFLGIVITAmfkgpssfdilqgHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMhqffsplskvkdepknislesvdspknkrskdtsfigmaaganedashravneekapllpi
Flexible Loop (DISEMBL)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNIslesvdspknkrskdTSFIGMAAganedashravneekapllpi
Low Complexity Region (SEG)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI
Disordered region (IsUnstruct)
****LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP*******************************************************
Disordered Region (DISOPRED)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF**********************************************************
Disordered Region (DISEMBL)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLES*********KDTSFIGMAAGA*******************
Disordered Region (DISPRO)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP******GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS*****************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q8GY97	406	CMP-sialic acid transport	yes	no	0.992	0.625	0.796	1e-115
Q9C5H6	405	CMP-sialic acid transport	no	no	0.996	0.629	0.772	1e-113
Q8LGE9	340	CMP-sialic acid transport	no	no	0.812	0.611	0.323	2e-27
F4JN00	352	CMP-sialic acid transport	no	no	0.746	0.542	0.352	3e-22
A4IHW3	321	Probable UDP-sugar transp	yes	no	0.753	0.601	0.262	4e-11
A0JMG9	314	Probable UDP-sugar transp	no	no	0.757	0.617	0.258	5e-11
Q9R0M8	390	UDP-galactose translocato	yes	no	0.781	0.512	0.284	2e-10
P78382	337	CMP-sialic acid transport	yes	no	0.730	0.554	0.281	5e-10
Q93890	368	UDP-galactose/UDP-N-acety	yes	no	0.781	0.543	0.266	1e-09
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.945	0.585	0.239	2e-09

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/255 (79%), Positives = 228/255 (89%), Gaps = 1/255 (0%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLK+IMKRRFSIIQWEALALLLIGIS+NQLRSLPEG + + +P+ATGA
Sbjct: 152 MLSNLKVLVIAVLLKMIMKRRFSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGA 211

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           Y+ T IFVTVPSLASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP S
Sbjct: 212 YICTFIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGS 271

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           FDILQGHS+ATM LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH L
Sbjct: 272 FDILQGHSRATMFLILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHIL 331

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNF+LGISIVFISMHQFFSPLSK KDE +N ++E VD+    R+KD SFI MAAGA E+
Sbjct: 332 TMNFLLGISIVFISMHQFFSPLSKAKDEQQNGNIELVDAKDGHRAKD-SFINMAAGATEE 390

Query: 241 ASHRAVNEEKAPLLP 255
           ASHR  ++++ PLLP
Sbjct: 391 ASHRIESDDRVPLLP 405

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/255 (77%), Positives = 226/255 (88%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLK++MKRRFSIIQWEALALLLIGISVNQLRSLPEG +A+G+P+ATGA
Sbjct: 150 MLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGA 209

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           Y+ T+IFVTVPS+ASVFNEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP S
Sbjct: 210 YVCTVIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGS 269

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           FDILQGHS+ATM LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH +
Sbjct: 270 FDILQGHSRATMFLILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVI 329

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNF+LGISIVFISMHQFFSPL+K +DE +      + + K+    + SFI MAAGANE+
Sbjct: 330 TMNFLLGISIVFISMHQFFSPLAKARDEQQQNGNLELGNTKDTHRANESFINMAAGANEE 389

Query: 241 ASHRAVNEEKAPLLP 255
           ASHR  ++++ PLLP
Sbjct: 390 ASHRGESDDRTPLLP 404

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           ++ NLK+    +L ++ +KR+ S +QW A+ LL +G + +Q++   E +           
Sbjct: 108 IMGNLKIVTTGILFRLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQG 167

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT----AMFK 116
           YL  ++   + +LA ++ E+ +K   DT +Y QNL LY +G++FN   ++         K
Sbjct: 168 YLLGILSAGLSALAGIYTEFLMKRNNDT-LYWQNLQLYTFGSLFNVARLIADDFRHGFEK 226

Query: 117 GPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALF 176
           GP    I  G+S  T L++ N  + G+L S+  KYAD I+K YS+++A + T +AS  LF
Sbjct: 227 GPWWQRIFDGYSITTWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLF 286

Query: 177 GHTLTMNFILGISIVFISMHQFFSPLSKVKDEP 209
               T+   LGI I  +S+H +F+P   + D P
Sbjct: 287 SFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLP 319

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 5/196 (2%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           +L NL +    +L +II+KR+ S IQW    LL  G +  QL S  +      LP  T A
Sbjct: 154 ILKNLNIISTGVLYRIILKRKLSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMA 213

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
            +  L+       A V+ E  +K +   +I  QN +LY +G  FN + IVI   F   ++
Sbjct: 214 IVMALL----SGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVAN 268

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
                G+S  T+L+I N+A  GI  S   KYAD I+K YS++VA + T + S  LF   L
Sbjct: 269 KGFFHGYSFITLLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHL 328

Query: 181 TMNFILGISIVFISMH 196
           ++ F LG ++V +S++
Sbjct: 329 SLAFFLGSTVVSVSVY 344

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLL---IGISVNQLRSLPEGTSALGLPVA 57
           +LSNLK+   A+L  + +++R S+ +W ++ LLL   +  S   ++ L + +S   L V 
Sbjct: 123 VLSNLKIVSTAVLYSLFLRQRLSVRRWLSVFLLLAAGVFYSYGGIQDLEKVSSDTNLYVT 182

Query: 58  TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKG 117
               L  L +  +  L++V+ E  LK+Q    +  QNL+LY +G I N     +TA    
Sbjct: 183 LPGLLLMLAYCLISGLSAVYTEMTLKTQ-KIPLNMQNLYLYSFGIIIN-----LTAHLTS 236

Query: 118 PSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFG 177
             + D   G S    ++I + A  G++ S   K ++ I + +  + + +  G  S  LF 
Sbjct: 237 SKNSDFFDGFSVWVWVIILSQALNGLIMSLVMKLSNNITRLFIISFSMLANGFLSFILFQ 296

Query: 178 HTLTMNFILGISIVFISMHQFF 199
             LT  F L + ++ ++++ ++
Sbjct: 297 LQLTALFFLAVVLIGLAVYMYY 318

Xenopus tropicalis (taxid: 8364)

>sp|A0JMG9|S35A4_DANRE Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio GN=slc35a4 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 7/201 (3%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLL-IGISVNQLRSLPEGTSALGLPVATG 59
           +LSNLK+   ALL    + +R    QW A+ LL+  G+S +      EG     + + + 
Sbjct: 120 VLSNLKIASTALLYTSCLGKRLHRRQWFAMGLLVSAGVSHSCFSYDLEGKRETAVYITSW 179

Query: 60  AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS 119
             L  L++  V  LA+V+ E  LKSQ    +  QNLFLY +G + N     + +   G  
Sbjct: 180 GLLLVLVYCFVSGLAAVYTERVLKSQ-RLPLSMQNLFLYTFGVVVN-----LASHLSGGE 233

Query: 120 SFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHT 179
                +G+S    +++    A G+L S   K+   I + +  + A +   + S  + G  
Sbjct: 234 QKGFFEGYSAVVWVIVAGQVANGLLMSVVMKHGTGITRLFVISSAMLVNAVLSWGILGVQ 293

Query: 180 LTMNFILGISIVFISMHQFFS 200
           LT  F+  + ++  +++ +++
Sbjct: 294 LTGYFLFPVVLIGWAVYLYYT 314

Danio rerio (taxid: 7955)

>sp|Q9R0M8|S35A2_MOUSE UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 4/204 (1%)

Query: 4   NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLY 63
            LK+   AL   +++ R  S +QW +L LL  G+++ Q +    G+    L    GA L 
Sbjct: 146 QLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQ-AGGSGPRPLDQNPGAGLA 204

Query: 64  TLIFVTVPS-LASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
            ++   + S  A V+ E  LK     S++ +NL L  +G     +G+   A     +S  
Sbjct: 205 AVVASCLSSGFAGVYFEKILKGS-SGSVWLRNLQLGLFGTALGLVGL-WWAEGTAVASQG 262

Query: 123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
              G++ A   ++ N A  G+L +   KYAD ILK ++++++ + + +AS  LFG  L  
Sbjct: 263 FFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHLDP 322

Query: 183 NFILGISIVFISMHQFFSPLSKVK 206
            F LG  +V  +++ +  P   VK
Sbjct: 323 LFALGAGLVIGAVYLYSLPRGAVK 346

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|P78382|S35A1_HUMAN CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 19/206 (9%)

Query: 4   NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS------LPEGTSALGLPVA 57
            LK+   AL   +++ R  S +QW ++ +L  G+++ Q +       + E    LG    
Sbjct: 122 QLKIPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGF--- 178

Query: 58  TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT--AMF 115
            GA     I V     A V+ E  LKS  DTS++ +N+ +Y  G I    G+ ++  A  
Sbjct: 179 -GA---IAIAVLCSGFAGVYFEKVLKSS-DTSLWVRNIQMYLSGIIVTLAGVYLSDGAEI 233

Query: 116 KGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAAL 175
           K    F    G++     +I   +  G+ +S   KY D I+K +S+  A + + +AS  L
Sbjct: 234 KEKGFF---YGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVML 290

Query: 176 FGHTLTMNFILGISIVFISMHQFFSP 201
           FG  +T+ F LG  +V +S++ +  P
Sbjct: 291 FGLQITLTFALGTLLVCVSIYLYGLP 316

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 3   SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
           S LK+F  A+   II++R  +  QW ALA+L +G+S+ QL+      S+   P      +
Sbjct: 150 SQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFVGFVAV 209

Query: 63  YTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
                  +   A ++ E  LK     S++ +N+ +  +    +F  I +    K  + + 
Sbjct: 210 VVA--CCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYG 266

Query: 123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
           +L G      L +      G+  +   KYAD I K ++++VA I + + S  LF    + 
Sbjct: 267 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 326

Query: 183 NFILGISIVFISMHQFFSPLSKV 205
            F+LG S+V  S+  + S  S V
Sbjct: 327 TFLLGASLVIFSIFLYSSHQSMV 349

Acts as a transporter of both UDP-galactose and UDP-N-acetylglucosamine into the Golgi lumen.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 42/284 (14%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGI----SVNQ--------------L 42
           +LSN  +   A+  ++I+KR+ S +QW +L +L + I    S N                
Sbjct: 124 LLSNFVIITTAVFFRLILKRQLSCVQWASLVILFLSIMGLTSRNDTAHHEVSVDVHHHLF 183

Query: 43  RSLPEGTSA-LGLP-----------VATGAYLY-------TLIFVTVPSLASVFNEYALK 83
            S P  +   L  P           +A   +L+        L+   + +LA+++NE  LK
Sbjct: 184 HSAPSNSCTYLNKPDTEAHTVSLKAIANFQFLHLGLGHFLILLQCVISALANIYNEKILK 243

Query: 84  S--QYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQGHSKATMLLICNNAA 140
              Q   SI+ QN  LY +G  FN L +V+    F    S     GH+  ++ LI   A 
Sbjct: 244 EGEQMSESIFIQNSKLYVFGVFFNGLTLVLHDEYFSKIKSCGFFYGHNGFSVALIFTTAF 303

Query: 141 QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF-F 199
            G+  +F  K+ D +    ++ + T+   + S  +F    +++F L   +V +S+  +  
Sbjct: 304 VGLSVAFILKFRDNMFHVLTAQITTVIITIVSYFVFSFKPSLDFFLEAPVVLLSIFIYNA 363

Query: 200 SPLSKVKDEPKNISLESVDSPKNKRSK-DTSFIGMAAGANEDAS 242
           S +++     K   L+ ++    +RS  D   +     ANED+ 
Sbjct: 364 SRITESSGTTKREKLKIINGDVWERSNGDGQELEKLTAANEDSE 407

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
298205053	344	unnamed protein product [Vitis vinifera]	1.0	0.744	0.886	1e-126
359495772	388	PREDICTED: probable UDP-sugar transporte	1.0	0.659	0.886	1e-125
224109188	403	predicted protein [Populus trichocarpa]	1.0	0.635	0.855	1e-124
255547474	400	UDP-galactose/UDP-N-acetylglucosamine tr	1.0	0.64	0.859	1e-124
224101251	408	predicted protein [Populus trichocarpa]	1.0	0.627	0.843	1e-123
359478080	405	PREDICTED: probable UDP-sugar transporte	0.996	0.629	0.850	1e-120
363808016	403	uncharacterized protein LOC100815055 [Gl	0.988	0.627	0.839	1e-117
356536564	403	PREDICTED: probable UDP-sugar transporte	0.988	0.627	0.843	1e-117
357445115	432	UDP-galactose transporter [Medicago trun	0.988	0.585	0.759	1e-114
145360939	406	nucleotide-sugar transporter [Arabidopsi	0.992	0.625	0.796	1e-113

>gi|298205053|emb|CBI38349.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/256 (88%), Positives = 241/256 (94%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLKIIM+R FSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPVATGA
Sbjct: 89  MLSNLKVLVIAVLLKIIMRRHFSIIQWEALALLLIGISVNQLRSLPEGTAALGLPVATGA 148

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           YLYTLIFVTVPSLASVFNEYALKSQ++TSIY QNLFLYGYGAIFNFLGI+ TA+ KGPSS
Sbjct: 149 YLYTLIFVTVPSLASVFNEYALKSQFETSIYLQNLFLYGYGAIFNFLGIIGTAILKGPSS 208

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           F+ILQGHS+ATMLLI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGHTL
Sbjct: 209 FNILQGHSRATMLLIFNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTL 268

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           T+NFILGISIVFISMHQFFSPLSKVKDEPKN SLE +DS  N+RSKD SFI MAAGANED
Sbjct: 269 TINFILGISIVFISMHQFFSPLSKVKDEPKNGSLEMIDSQNNQRSKDASFINMAAGANED 328

Query: 241 ASHRAVNEEKAPLLPI 256
           ASHR   +EKAPLLPI
Sbjct: 329 ASHRVEPDEKAPLLPI 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495772|ref|XP_002268240.2| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/256 (88%), Positives = 241/256 (94%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLKIIM+R FSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPVATGA
Sbjct: 133 MLSNLKVLVIAVLLKIIMRRHFSIIQWEALALLLIGISVNQLRSLPEGTAALGLPVATGA 192

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           YLYTLIFVTVPSLASVFNEYALKSQ++TSIY QNLFLYGYGAIFNFLGI+ TA+ KGPSS
Sbjct: 193 YLYTLIFVTVPSLASVFNEYALKSQFETSIYLQNLFLYGYGAIFNFLGIIGTAILKGPSS 252

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           F+ILQGHS+ATMLLI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGHTL
Sbjct: 253 FNILQGHSRATMLLIFNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTL 312

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           T+NFILGISIVFISMHQFFSPLSKVKDEPKN SLE +DS  N+RSKD SFI MAAGANED
Sbjct: 313 TINFILGISIVFISMHQFFSPLSKVKDEPKNGSLEMIDSQNNQRSKDASFINMAAGANED 372

Query: 241 ASHRAVNEEKAPLLPI 256
           ASHR   +EKAPLLPI
Sbjct: 373 ASHRVEPDEKAPLLPI 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109188|ref|XP_002315116.1| predicted protein [Populus trichocarpa] gi|222864156|gb|EEF01287.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/256 (85%), Positives = 240/256 (93%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLK+IMKRRFSIIQWEALALLLIGIS+NQL+SLP G++A+GL VATGA
Sbjct: 148 MLSNLKVLVIAVLLKVIMKRRFSIIQWEALALLLIGISLNQLQSLPAGSTAMGLSVATGA 207

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           YLYTLIFVTVPS ASV+NEYALKSQ++TSIY QNLFLYGYGAIFNFL I++TA+FKGPSS
Sbjct: 208 YLYTLIFVTVPSFASVYNEYALKSQFETSIYLQNLFLYGYGAIFNFLAILVTALFKGPSS 267

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
            DIL GHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGHTL
Sbjct: 268 LDILHGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTL 327

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNFILGISIVFISMHQFFSPLSKVKDEP+N SLE+VD   N+RSKD+SFI MAAGAN+D
Sbjct: 328 TMNFILGISIVFISMHQFFSPLSKVKDEPQNGSLETVDGQNNQRSKDSSFINMAAGANDD 387

Query: 241 ASHRAVNEEKAPLLPI 256
           ASHR  ++EKAPLLPI
Sbjct: 388 ASHRVEHDEKAPLLPI 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547474|ref|XP_002514794.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis] gi|223545845|gb|EEF47348.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/256 (85%), Positives = 237/256 (92%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP GT+A+GLPVATGA
Sbjct: 145 MLSNLKVLVIAVLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPGGTTAMGLPVATGA 204

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           YLYTLIF TVPSLASV+NEYALKSQ+DTSIY QNLFLYGYGAIFNFL I++TA+FKGPSS
Sbjct: 205 YLYTLIFATVPSLASVYNEYALKSQFDTSIYLQNLFLYGYGAIFNFLAILVTAIFKGPSS 264

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
            DILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGHTL
Sbjct: 265 LDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTL 324

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNFILGISIVFISMHQFFSPLSKVKDEP N  ++ +D   N+RSKD +FI M AGANED
Sbjct: 325 TMNFILGISIVFISMHQFFSPLSKVKDEPPNGGVQMMDGKNNQRSKDAAFINMTAGANED 384

Query: 241 ASHRAVNEEKAPLLPI 256
           A+H   ++EKAPLLPI
Sbjct: 385 ANHLVEHDEKAPLLPI 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101251|ref|XP_002312202.1| predicted protein [Populus trichocarpa] gi|222852022|gb|EEE89569.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/256 (84%), Positives = 238/256 (92%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           ML NLKV VIA+LLK+IMKRRFSIIQWEALALLLIGISVNQLR+LPEG+SA+GLPVATGA
Sbjct: 153 MLGNLKVLVIAVLLKMIMKRRFSIIQWEALALLLIGISVNQLRTLPEGSSAMGLPVATGA 212

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           YLYTLIFV+VPS ASV+NEYALKSQ++TSIY QNLFLYGYGAIFNFL I++TA+FKGPSS
Sbjct: 213 YLYTLIFVSVPSFASVYNEYALKSQFETSIYLQNLFLYGYGAIFNFLAILVTAIFKGPSS 272

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
            DIL GHS+ATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGH L
Sbjct: 273 LDILHGHSRATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHAL 332

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNFILGISIVFISMHQFFSPLSKVKDEP++ SLE VDS  ++RSKD+SFI M AGAN+D
Sbjct: 333 TMNFILGISIVFISMHQFFSPLSKVKDEPRDDSLEMVDSQNSQRSKDSSFINMTAGANDD 392

Query: 241 ASHRAVNEEKAPLLPI 256
           ASH   ++EKAPLLPI
Sbjct: 393 ASHHVGHDEKAPLLPI 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478080|ref|XP_003632066.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera] gi|297745192|emb|CBI39184.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/255 (85%), Positives = 235/255 (92%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLK+IM+RRFS IQWEALALLLIGISVNQ+RSLPEGT+ALGLPVATGA
Sbjct: 150 MLSNLKVLVIAVLLKMIMRRRFSTIQWEALALLLIGISVNQMRSLPEGTTALGLPVATGA 209

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           YLYTLIFVTVPSLASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGIV TA+ KGPSS
Sbjct: 210 YLYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGIVGTAVVKGPSS 269

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           FDIL GHSKATMLLI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAA+FGHTL
Sbjct: 270 FDILHGHSKATMLLIFNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAAMFGHTL 329

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           T+NFILGISIVFISMHQFFSPLSKVKDE +N  LE +D   + R KD+SFI MAAGANE+
Sbjct: 330 TINFILGISIVFISMHQFFSPLSKVKDEEQNGKLEVMDIQGDHRLKDSSFINMAAGANEE 389

Query: 241 ASHRAVNEEKAPLLP 255
           ASHR  ++E+ PLLP
Sbjct: 390 ASHRVGSDERQPLLP 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808016|ref|NP_001242719.1| uncharacterized protein LOC100815055 [Glycine max] gi|255636089|gb|ACU18389.1| unknown [Glycine max]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/255 (83%), Positives = 232/255 (90%), Gaps = 2/255 (0%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIALLLK+IMKRRFSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPV  GA
Sbjct: 150 MLSNLKVLVIALLLKVIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGA 209

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           Y+YTLIFVTVPSLASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T + KGPSS
Sbjct: 210 YIYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVVVKGPSS 269

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           FDILQGHSKATMLLI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGHTL
Sbjct: 270 FDILQGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTL 329

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           T+NF++GISIVFISMHQFFSPLSKVKDE +N  LE  D    +RSK+ SFI MAAGANE+
Sbjct: 330 TLNFVIGISIVFISMHQFFSPLSKVKDE-QNGVLELHDVHDKQRSKE-SFINMAAGANEE 387

Query: 241 ASHRAVNEEKAPLLP 255
           A+HR  ++E+ PLLP
Sbjct: 388 ATHRVGHDERQPLLP 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536564|ref|XP_003536807.1| PREDICTED: probable UDP-sugar transporter protein SLC35A4-like [Glycine max]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/255 (84%), Positives = 231/255 (90%), Gaps = 2/255 (0%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIALLLK+IMKRRFSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPV  GA
Sbjct: 150 MLSNLKVLVIALLLKVIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGA 209

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           Y YTLIFVTVPSLASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T + KGPSS
Sbjct: 210 YAYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVVVKGPSS 269

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           FDILQGHSKATMLLI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGHTL
Sbjct: 270 FDILQGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTL 329

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNF++GISIVFISMHQFFSPLSKVKDE +N  LE  D    +RSK+ SFI MAAGANE+
Sbjct: 330 TMNFVIGISIVFISMHQFFSPLSKVKDE-QNGVLELHDVHDKQRSKE-SFINMAAGANEE 387

Query: 241 ASHRAVNEEKAPLLP 255
           A+HR  ++E+ PLLP
Sbjct: 388 ATHRVGHDERQPLLP 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445115|ref|XP_003592835.1| UDP-galactose transporter [Medicago truncatula] gi|355481883|gb|AES63086.1| UDP-galactose transporter [Medicago truncatula]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/279 (75%), Positives = 235/279 (84%), Gaps = 26/279 (9%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIALLLK++MKRRFSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPV  GA
Sbjct: 155 MLSNLKVLVIALLLKVVMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGA 214

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQ------------------------NLF 96
           Y+YT IFVTVPS+ASV+NEYALKSQYDTSIY Q                        NLF
Sbjct: 215 YVYTFIFVTVPSMASVYNEYALKSQYDTSIYLQVKYDTFNCFNIYIIDANSLFFYLQNLF 274

Query: 97  LYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTIL 156
           LYGYGA+FNFLGIV+TA+FKGPSSFDIL+GHSKATMLLI NNAAQGILSSFFFKYADTIL
Sbjct: 275 LYGYGAMFNFLGIVVTAIFKGPSSFDILEGHSKATMLLIANNAAQGILSSFFFKYADTIL 334

Query: 157 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLES 216
           KKYSSTVATIFTG+ASA LFGH LTMNF++GISIVFISMHQFFSPLSKV+DE +N +LE 
Sbjct: 335 KKYSSTVATIFTGIASAVLFGHKLTMNFLIGISIVFISMHQFFSPLSKVRDE-QNGALEL 393

Query: 217 VDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLP 255
            D  + +RSKD SF+ MAAGANE+ASHR  ++E+ PLLP
Sbjct: 394 HDVQEKQRSKD-SFLNMAAGANEEASHRVGHDERQPLLP 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360939|ref|NP_181853.3| nucleotide-sugar transporter [Arabidopsis thaliana] gi|75151390|sp|Q8GY97.1|CSTR2_ARATH RecName: Full=CMP-sialic acid transporter 2; Short=CMP-SA-Tr 2; Short=CMP-Sia-Tr 2 gi|26450627|dbj|BAC42425.1| unknown protein [Arabidopsis thaliana] gi|51971655|dbj|BAD44492.1| unnamed protein product [Arabidopsis thaliana] gi|330255141|gb|AEC10235.1| nucleotide-sugar transporter [Arabidopsis thaliana]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/255 (79%), Positives = 228/255 (89%), Gaps = 1/255 (0%)

Query: 1   MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
           MLSNLKV VIA+LLK+IMKRRFSIIQWEALALLLIGIS+NQLRSLPEG + + +P+ATGA
Sbjct: 152 MLSNLKVLVIAVLLKMIMKRRFSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGA 211

Query: 61  YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
           Y+ T IFVTVPSLASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP S
Sbjct: 212 YICTFIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGS 271

Query: 121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
           FDILQGHS+ATM LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH L
Sbjct: 272 FDILQGHSRATMFLILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHIL 331

Query: 181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
           TMNF+LGISIVFISMHQFFSPLSK KDE +N ++E VD+    R+KD SFI MAAGA E+
Sbjct: 332 TMNFLLGISIVFISMHQFFSPLSKAKDEQQNGNIELVDAKDGHRAKD-SFINMAAGATEE 390

Query: 241 ASHRAVNEEKAPLLP 255
           ASHR  ++++ PLLP
Sbjct: 391 ASHRIESDDRVPLLP 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2040976	406	AT2G43240 [Arabidopsis thalian	0.992	0.625	0.796	2.9e-103
TAIR|locus:2081292	405	UTR6 "UDP-galactose transporte	0.992	0.627	0.781	1.4e-101
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.804	0.605	0.334	1.2e-28
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.746	0.542	0.352	2e-24
UNIPROTKB|F1NDA7	299	SLC35A4 "Uncharacterized prote	0.75	0.642	0.282	1.4e-18
FB|FBgn0031676	388	CG14040 [Drosophila melanogast	0.683	0.451	0.302	1.4e-16
UNIPROTKB|G5EFB7	244	srf-3 "Protein SRF-3, isoform	0.781	0.819	0.266	9.8e-16
UNIPROTKB|G5EFD3	328	srf-3 "Protein SRF-3, isoform	0.781	0.609	0.266	1.8e-15
WB|WBGene00005153	368	srf-3 [Caenorhabditis elegans	0.781	0.543	0.266	2.9e-15
UNIPROTKB|Q93890	368	srf-3 "UDP-galactose/UDP-N-ace	0.781	0.543	0.266	2.9e-15

TAIR|locus:2040976 AT2G43240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 203/255 (79%), Positives = 228/255 (89%)

Query:     1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
             MLSNLKV VIA+LLK+IMKRRFSIIQWEALALLLIGIS+NQLRSLPEG + + +P+ATGA
Sbjct:   152 MLSNLKVLVIAVLLKMIMKRRFSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGA 211

Query:    61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
             Y+ T IFVTVPSLASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP S
Sbjct:   212 YICTFIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGS 271

Query:   121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
             FDILQGHS+ATM LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH L
Sbjct:   272 FDILQGHSRATMFLILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHIL 331

Query:   181 TMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANED 240
             TMNF+LGISIVFISMHQFFSPLSK KDE +N ++E VD+    R+KD SFI MAAGA E+
Sbjct:   332 TMNFLLGISIVFISMHQFFSPLSKAKDEQQNGNIELVDAKDGHRAKD-SFINMAAGATEE 390

Query:   241 ASHRAVNEEKAPLLP 255
             ASHR  ++++ PLLP
Sbjct:   391 ASHRIESDDRVPLLP 405

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

TAIR|locus:2081292 UTR6 "UDP-galactose transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 200/256 (78%), Positives = 230/256 (89%)

Query:     1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
             MLSNLKV VIA+LLK++MKRRFSIIQWEALALLLIGISVNQLRSLPEG +A+G+P+ATGA
Sbjct:   150 MLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGA 209

Query:    61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
             Y+ T+IFVTVPS+ASVFNEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP S
Sbjct:   210 YVCTVIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGS 269

Query:   121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
             FDILQGHS+ATM LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH +
Sbjct:   270 FDILQGHSRATMFLILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVI 329

Query:   181 TMNFILGISIVFISMHQFFSPLSKVKDEPK-NISLESVDSPKNKRSKDTSFIGMAAGANE 239
             TMNF+LGISIVFISMHQFFSPL+K +DE + N +LE + + K+    + SFI MAAGANE
Sbjct:   330 TMNFLLGISIVFISMHQFFSPLAKARDEQQQNGNLE-LGNTKDTHRANESFINMAAGANE 388

Query:   240 DASHRAVNEEKAPLLP 255
             +ASHR  ++++ PLLP
Sbjct:   389 EASHRGESDDRTPLLP 404

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 72/215 (33%), Positives = 121/215 (56%)

Query:     1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT--SALGLPVAT 58
             ++ NLK+    +L ++ +KR+ S +QW A+ LL +G + +Q++   E +  S    P+  
Sbjct:   108 IMGNLKIVTTGILFRLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQ- 166

Query:    59 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAM---F 115
               YL  ++   + +LA ++ E+ +K   DT +Y QNL LY +G++FN   ++       F
Sbjct:   167 -GYLLGILSAGLSALAGIYTEFLMKRNNDT-LYWQNLQLYTFGSLFNVARLIADDFRHGF 224

Query:   116 -KGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAA 174
              KGP    I  G+S  T L++ N  + G+L S+  KYAD I+K YS+++A + T +AS  
Sbjct:   225 EKGPWWQRIFDGYSITTWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIY 284

Query:   175 LFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP 209
             LF    T+   LGI I  +S+H +F+P   + D P
Sbjct:   285 LFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLP 319

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 69/196 (35%), Positives = 104/196 (53%)

Query:     1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGA 60
             +L NL +    +L +II+KR+ S IQW    LL  G +  QL S  +      LP  T A
Sbjct:   154 ILKNLNIISTGVLYRIILKRKLSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMA 213

Query:    61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 120
              +  L+       A V+ E  +K +   +I  QN +LY +G  FN + IVI   F   ++
Sbjct:   214 IVMALL----SGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVAN 268

Query:   121 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 180
                  G+S  T+L+I N+A  GI  S   KYAD I+K YS++VA + T + S  LF   L
Sbjct:   269 KGFFHGYSFITLLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHL 328

Query:   181 TMNFILGISIVFISMH 196
             ++ F LG ++V +S++
Sbjct:   329 SLAFFLGSTVVSVSVY 344

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|F1NDA7 SLC35A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 58/205 (28%), Positives = 110/205 (53%)

Query:     1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLI-GISVN--QLRSLPEGT---SALGL 54
             +LSNLK+   ALL  + +++R  + QW AL LL+  G+S +   LR  P G+   SA+ L
Sbjct:    99 ILSNLKIVSTALLYSLFLRQRLRVRQWLALCLLMAAGVSYSCGGLRD-PRGSGSPSAMQL 157

Query:    55 PVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAM 114
              +     L   ++  +  L++V+ E  LK+Q    +  QN+FLY +G + N +G   ++ 
Sbjct:   158 HITLVGLLLISVYCLISGLSAVYTEAILKTQA-LPLNLQNIFLYFFGVLVNLVGHFWSST 216

Query:   115 FKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAA 174
              +G      L+G S   ++++ + A  G++ S   K++  I + +  + + +   L S A
Sbjct:   217 ERG-----FLEGFSFWVLVIVVSQALNGLIMSVVMKHSSNITRLFVISCSILVNALLSVA 271

Query:   175 LFGHTLTMNFILGISIVFISMHQFF 199
             LF   LT+ F + +S + +++H ++
Sbjct:   272 LFNLQLTLLFFIAVSCIGLAVHLYY 296

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0031676 CG14040 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 56/185 (30%), Positives = 101/185 (54%)

Query:    49 TSALGLPVATGAYLYTLIFV---TVPS-LASVFNEYALKSQ-YDTSIYHQNLFLYGYGAI 103
             T A G  ++   +  + +F+   T+ S LA V+NEY LK +  D +I+ QN+F+Y    +
Sbjct:   190 THAHGKNMSGFDFSLSAVFILAQTICSCLAGVYNEYLLKDKGADVNIFVQNVFMYLDSIV 249

Query:   104 FNFLGIVITAMFKGPSSFDILQGHSK-ATMLLICNNAAQGILSSFFFKYADTILKKYSST 162
              N + +++        S   L    + + +++I NNAA GI++SFF KY ++ILK ++S 
Sbjct:   250 CNAVILLLRGELLDAFSPQNLGSIMRFSVLIIIVNNAAIGIVTSFFLKYMNSILKTFASA 309

Query:   163 VATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF-SPLSKV-KDEP-KNISLESVDS 219
             +  +FT +    LF   + MN  L I++V  +++ +  SP+  + K  P  N+S ++   
Sbjct:   310 LELLFTAVLCYFLFSIPIYMNTALAIAVVSYAIYLYTQSPVVNLGKVRPLSNLS-DATTK 368

Query:   220 PKNKR 224
               +KR
Sbjct:   369 STDKR 373

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=NAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005797 "Golgi medial cisterna" evidence=IDA

UNIPROTKB|G5EFB7 srf-3 "Protein SRF-3, isoform c" [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 54/203 (26%), Positives = 97/203 (47%)

Query:     3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
             S LK+F  A+   II++R  +  QW ALA+L +G+S+ QL+      S+   P     ++
Sbjct:    26 SQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFV 83

Query:    63 YTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
               ++   +   A ++ E  LK     S++ +N+ +  +    +F  I +    K  + + 
Sbjct:    84 AVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYG 142

Query:   123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
             +L G      L +      G+  +   KYAD I K ++++VA I + + S  LF    + 
Sbjct:   143 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 202

Query:   183 NFILGISIVFISMHQFFSPLSKV 205
              F+LG S+V  S+  + S  S V
Sbjct:   203 TFLLGASLVIFSIFLYSSHQSMV 225

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

UNIPROTKB|G5EFD3 srf-3 "Protein SRF-3, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 54/203 (26%), Positives = 97/203 (47%)

Query:     3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
             S LK+F  A+   II++R  +  QW ALA+L +G+S+ QL+      S+   P     ++
Sbjct:   110 SQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFV 167

Query:    63 YTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
               ++   +   A ++ E  LK     S++ +N+ +  +    +F  I +    K  + + 
Sbjct:   168 AVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYG 226

Query:   123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
             +L G      L +      G+  +   KYAD I K ++++VA I + + S  LF    + 
Sbjct:   227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286

Query:   183 NFILGISIVFISMHQFFSPLSKV 205
              F+LG S+V  S+  + S  S V
Sbjct:   287 TFLLGASLVIFSIFLYSSHQSMV 309

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

WB|WBGene00005153 srf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 54/203 (26%), Positives = 97/203 (47%)

Query:     3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
             S LK+F  A+   II++R  +  QW ALA+L +G+S+ QL+      S+   P     ++
Sbjct:   150 SQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFV 207

Query:    63 YTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
               ++   +   A ++ E  LK     S++ +N+ +  +    +F  I +    K  + + 
Sbjct:   208 AVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYG 266

Query:   123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
             +L G      L +      G+  +   KYAD I K ++++VA I + + S  LF    + 
Sbjct:   267 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 326

Query:   183 NFILGISIVFISMHQFFSPLSKV 205
              F+LG S+V  S+  + S  S V
Sbjct:   327 TFLLGASLVIFSIFLYSSHQSMV 349

GO:0016020 "membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IC

UNIPROTKB|Q93890 srf-3 "UDP-galactose/UDP-N-acetylglucosamine transporter srf-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 54/203 (26%), Positives = 97/203 (47%)

Query:     3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
             S LK+F  A+   II++R  +  QW ALA+L +G+S+ QL+      S+   P     ++
Sbjct:   150 SQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFV 207

Query:    63 YTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
               ++   +   A ++ E  LK     S++ +N+ +  +    +F  I +    K  + + 
Sbjct:   208 AVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYG 266

Query:   123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
             +L G      L +      G+  +   KYAD I K ++++VA I + + S  LF    + 
Sbjct:   267 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 326

Query:   183 NFILGISIVFISMHQFFSPLSKV 205
              F+LG S+V  S+  + S  S V
Sbjct:   327 TFLLGASLVIFSIFLYSSHQSMV 349

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY97	CSTR2_ARATH	No assigned EC number	0.7960	0.9921	0.6256	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	4e-24
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	4e-10

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score = 96.6 bits (241), Expect = 4e-24
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 3   SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
             LK+   AL   +++ R+ S  QW +L LL +G+++ QL      T++     A     
Sbjct: 50  YQLKILTTALFSVLMLGRKLSWYQWASLLLLFLGVAIVQLDQKSSETNSKR--GAEQNPG 107

Query: 63  YTLIFVTV----PSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP 118
             L  V         A V+ E  LK   +TSI+ +N+ LY +G  F  L   +     G 
Sbjct: 108 LGLSAVLAACFTSGFAGVYFEKILKGS-NTSIWIRNIQLYFFGIFFALLTCWLY---DGS 163

Query: 119 SSFD--ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALF 176
           +  +     G++     ++   A  G++ +   KYAD ILK +++++A I + +AS  LF
Sbjct: 164 AISEKGFFFGYTAFVWAVVLLQAVGGLVVAVVVKYADNILKGFATSLAIILSTVASVLLF 223

Query: 177 GHTLTMNFILGISIV 191
               T+ F+LG  +V
Sbjct: 224 DFRPTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 4/192 (2%)

Query: 3   SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYL 62
           + LK+   AL+    +       QW +L LL +G+++ Q+      T   G PV   + +
Sbjct: 31  TQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLSAV 90

Query: 63  YTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 122
            + +  +    A V+ E  LK   DT  + +NL L  +G    F  ++ +      S+F 
Sbjct: 91  LSALLSSG--FAGVYFEKILKD-GDTMFWSRNLQLPLFGLFSTFSVLLWSDG-TLISNFG 146

Query: 123 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 182
              G+  A  ++   N   G+      +YAD   K + + ++ I + LAS  LF   ++ 
Sbjct: 147 FFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206

Query: 183 NFILGISIVFIS 194
            F LG  +VF++
Sbjct: 207 TFYLGAILVFLA 218

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.9
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.85
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.77
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.75
PLN00411	358	nodulin MtN21 family protein; Provisional	99.71
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.71
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.69
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.68
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.66
PRK11689	295	aromatic amino acid exporter; Provisional	99.62
PRK11272	292	putative DMT superfamily transporter inner membran	99.6
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.54
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.54
PRK15430	296	putative chloramphenical resistance permease RarD;	99.48
KOG1580	337	consensus UDP-galactose transporter related protei	99.41
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.4
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.37
KOG1581	327	consensus UDP-galactose transporter related protei	99.28
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.21
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.13
KOG1582	367	consensus UDP-galactose transporter related protei	99.07
COG2962	293	RarD Predicted permeases [General function predict	98.99
KOG2766	336	consensus Predicted membrane protein [Function unk	98.96
KOG2765	416	consensus Predicted membrane protein [Function unk	98.93
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.9
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.83
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.79
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.7
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.61
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.59
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.4
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.23
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.05
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.01
COG2510	140	Predicted membrane protein [Function unknown]	97.95
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.89
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.7
PRK15430	296	putative chloramphenical resistance permease RarD;	97.64
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.6
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.36
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.35
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.28
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.21
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.19
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.14
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.04
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.0
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.99
PRK11689	295	aromatic amino acid exporter; Provisional	96.96
PRK11272	292	putative DMT superfamily transporter inner membran	96.94
PLN00411	358	nodulin MtN21 family protein; Provisional	96.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.8
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.71
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.68
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.61
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.58
COG2076	106	EmrE Membrane transporters of cations and cationic	96.46
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.34
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.29
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.18
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.16
PRK11431	105	multidrug efflux system protein; Provisional	96.14
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.08
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.89
PRK13499	345	rhamnose-proton symporter; Provisional	95.87
PRK11431	105	multidrug efflux system protein; Provisional	95.85
COG2076	106	EmrE Membrane transporters of cations and cationic	95.8
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.73
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.71
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.67
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.48
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.37
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.25
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.83
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.02
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.59
KOG4510	346	consensus Permease of the drug/metabolite transpor	92.49
COG2962	293	RarD Predicted permeases [General function predict	91.97
KOG2922	335	consensus Uncharacterized conserved protein [Funct	90.65
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	90.19
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	90.14
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	89.93
KOG1581	327	consensus UDP-galactose transporter related protei	88.77
PRK13499	345	rhamnose-proton symporter; Provisional	88.43
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	88.34
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	87.41
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	87.09
KOG2765	416	consensus Predicted membrane protein [Function unk	87.09
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	84.02
KOG1580	337	consensus UDP-galactose transporter related protei	81.85

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.6e-40  Score=291.97  Aligned_cols=202  Identities=32%  Similarity=0.487  Sum_probs=176.0

Q ss_pred             CCcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCC-C-CCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 025215            1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT-S-ALGLPVATGAYLYTLIFVTVPSLASVFN   78 (256)
Q Consensus         1 ~l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~-~-~~~~~~~~~G~l~~l~a~~~sala~V~~   78 (256)
                      +++|+||++||++++++|+||++++||.+++++++|+.++|.+..+..+ . .........|...++.+|++|++++||+
T Consensus       123 Vt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYf  202 (345)
T KOG2234|consen  123 VTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYF  202 (345)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999944322211 1 1111234579999999999999999999


Q ss_pred             HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025215           79 EYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKK  158 (256)
Q Consensus        79 e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~ky~~~i~k~  158 (256)
                      ||++|+. +.+.|+||+++|++|.++++..++....-.+. ..++|+||++.+|.+++.+++||+++++++||+|||+|.
T Consensus       203 EkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~-~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~  280 (345)
T KOG2234|consen  203 EKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQDGEAIN-EYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKG  280 (345)
T ss_pred             HHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhccccccc-cCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Confidence            9999996 68999999999999999999777643222222 468999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCC
Q 025215          159 YSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSK  204 (256)
Q Consensus       159 ~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~  204 (256)
                      ++++++++++.++|+++||.++|..+++|..+|+.++++|+..+++
T Consensus       281 f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  281 FSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence            9999999999999999999999999999999999999999966544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=2.6e-36  Score=262.90  Aligned_cols=187  Identities=32%  Similarity=0.510  Sum_probs=164.8

Q ss_pred             CCcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCC--CCC------CChhhhHHHHHHHHHHHHH
Q 025215            1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS--ALG------LPVATGAYLYTLIFVTVPS   72 (256)
Q Consensus         1 ~l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~--~~~------~~~~~~G~l~~l~a~~~sa   72 (256)
                      |++|+|+++||++++++||||++++||.|++++++|+++++.++....+.  ..+      ......|++++++++++||
T Consensus        48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~  127 (244)
T PF04142_consen   48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSG  127 (244)
T ss_pred             HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHhHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999887554211  111      1234579999999999999


Q ss_pred             HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcchhhcCCchhHHHHHHHHhhhhHHHHHHHH
Q 025215           73 LASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDILQGHSKATMLLICNNAAQGILSSFFFK  150 (256)
Q Consensus        73 la~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~--~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~k  150 (256)
                      +++||+||++|++ +.|+|.||+|+|++|++++++....   .++.  ...++|+||++++|..++.++++|+++++++|
T Consensus       128 ~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~---~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~K  203 (244)
T PF04142_consen  128 FAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLL---SDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLK  203 (244)
T ss_pred             HHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhc---ccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999996 5899999999999999998876542   2332  34679999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 025215          151 YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV  191 (256)
Q Consensus       151 y~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lV  191 (256)
                      |+|||+|.++++++++++.++|+.+||.+++..+++|..+|
T Consensus       204 yadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  204 YADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            99999999999999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=99.90  E-value=5e-23  Score=176.86  Aligned_cols=190  Identities=25%  Similarity=0.359  Sum_probs=161.7

Q ss_pred             cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 025215            3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL   82 (256)
Q Consensus         3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~l   82 (256)
                      .|.|++.++++.+..++++++..||.++..+..|+..++.++..++....|  ....|..+++.++++++++++|.|+..
T Consensus        31 ~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g--~~~~g~~~~l~a~~~~~~~~~y~e~~~  108 (222)
T TIGR00803        31 TQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG--NPVVGLSAVLSALLSSGFAGVYFEKIL  108 (222)
T ss_pred             ehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc--cHHHHHHHHHHHHHHHhhhHHHHHHcc
Confidence            399999999999999999999999999999999999888766432111112  344688899999999999999999997


Q ss_pred             hccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcchhhcCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 025215           83 KSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYS  160 (256)
Q Consensus        83 k~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~--~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~ky~~~i~k~~a  160 (256)
                      |++ +.+++.+|+++++++.+.+......   .+++  ...++++|++...|..++.++++++++++++||.|+++|+++
T Consensus       109 k~~-~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~  184 (222)
T TIGR00803       109 KDG-DTMFWSRNLQLPLFGLFSTFSVLLW---SDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFV  184 (222)
T ss_pred             cCC-CCchHHHHHHHHHHHHHHHHHHHhh---cccchhhccCcccCCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHH
Confidence            775 5789999999999998865543321   1221  134567889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 025215          161 STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  198 (256)
Q Consensus       161 ~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly  198 (256)
                      ++.+++++.++|+++||++++..+++|..+|+.|+++|
T Consensus       185 ~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       185 TALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            99999999999999999999999999999999999887

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.85  E-value=7.9e-20  Score=165.32  Aligned_cols=197  Identities=13%  Similarity=0.174  Sum_probs=149.9

Q ss_pred             CCcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 025215            1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEY   80 (256)
Q Consensus         1 ~l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~   80 (256)
                      +|.++.+++++++++++||+|+++.||.|+++.++|+.++...|...++...+.+....|++++++++++.|+++|++|+
T Consensus       110 lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~  189 (334)
T PF06027_consen  110 LLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEK  189 (334)
T ss_pred             hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999988877543322222234457999999999999999999999


Q ss_pred             HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHH----HHHhhhhHHHHHHHHHHHHHH
Q 025215           81 ALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI----CNNAAQGILSSFFFKYADTIL  156 (256)
Q Consensus        81 ~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i----~~~a~~g~~v~~v~ky~~~i~  156 (256)
                      ..|+.   +......+++++|.+++.+.+.   ++|... .+.+ .+++..+...    +.....-.++..++|+.++..
T Consensus       190 ~v~~~---~~~~~lg~~Glfg~ii~~iq~~---ile~~~-i~~~-~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~  261 (334)
T PF06027_consen  190 LVKKA---PRVEFLGMLGLFGFIISGIQLA---ILERSG-IESI-HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF  261 (334)
T ss_pred             hcccC---CHHHHHHHHHHHHHHHHHHHHH---heehhh-hhcc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence            99874   5566677888999988776543   234321 1111 1233222221    122223445567788888887


Q ss_pred             HHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCCC
Q 025215          157 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV  205 (256)
Q Consensus       157 k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~~  205 (256)
                      -+.....+.+.+.+.++++||+++++.+++|.++|++|..+|+..+++.
T Consensus       262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            7777777889999999999999999999999999999999999875443

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.77  E-value=2.8e-17  Score=147.63  Aligned_cols=200  Identities=17%  Similarity=0.266  Sum_probs=149.0

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGL-PVATGAYLYTLIFVTVPSLASVFNEY   80 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~-~~~~~G~l~~l~a~~~sala~V~~e~   80 (256)
                      +...|++.+++++++++|||++++||.+++++++|+.+....+..++...... .....|+.+++++.++.|+.++++||
T Consensus        96 ~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~  175 (303)
T PF08449_consen   96 FKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEK  175 (303)
T ss_pred             HhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999887765432211111 11123999999999999999999999


Q ss_pred             HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhhcCCchh---HHHHHHHHhhhhHHHHHHHHHHHHH
Q 025215           81 ALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGHSKA---TMLLICNNAAQGILSSFFFKYADTI  155 (256)
Q Consensus        81 ~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~--~~~~~~g~~~~---~~~~i~~~a~~g~~v~~v~ky~~~i  155 (256)
                      +++++ +.+.+..-....+++.++.++....-  ..++.  ...+...++..   .....+.++++...+....|..++.
T Consensus       176 ~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~l--~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al  252 (303)
T PF08449_consen  176 LFKKY-GKSPWELMFYTNLFSLPFLLILLFLL--PTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSAL  252 (303)
T ss_pred             HHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHH--HhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            99886 45555555556677777655444320  02221  11222222222   2222345566777777778899999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCC
Q 025215          156 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSK  204 (256)
Q Consensus       156 ~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~  204 (256)
                      +.+..++++.++++++|+++||+++++.+++|..+|+.|..+|+...+|
T Consensus       253 ~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k  301 (303)
T PF08449_consen  253 TTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK  301 (303)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999987433

; GO: 0055085 transmembrane transport

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.75  E-value=3.4e-16  Score=140.21  Aligned_cols=192  Identities=17%  Similarity=0.119  Sum_probs=133.5

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      +.++.++++.+++++++|||++++||.++++.++|+.++..++.+.      .+....|+++.++++++++.++++.||.
T Consensus        92 l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------~~~~~~G~~l~l~aal~~a~~~v~~~~~  165 (299)
T PRK11453         92 VLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------QHVAMLGFMLTLAAAFSWACGNIFNKKI  165 (299)
T ss_pred             HHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999998877543211      1122359999999999999999999997


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhhcCCchhHHHHHHHHhhhhHHHHHHH-----HHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-FDILQGHSKATMLLICNNAAQGILSSFFF-----KYADTI  155 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~i~~~a~~g~~v~~v~-----ky~~~i  155 (256)
                      .++.+.......+.+....+.+   +........+++.. ...+..+++..|..+++.++.+..+++.+     |+.++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~  242 (299)
T PRK11453        166 MSHSTRPAVMSLVVWSALIPII---PFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETW  242 (299)
T ss_pred             hcccCccchhHHHHHHHHHHHH---HHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            6553212222222222222222   22222222333211 11223445566777777777666666554     445555


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          156 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       156 ~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      ..+....+.++++.+++++++||+++..+++|+++++.|+++-..+.
T Consensus       243 ~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        243 RVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            66666778889999999999999999999999999999998876653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.71  E-value=1.6e-15  Score=139.18  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=128.4

Q ss_pred             CcchHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHhHhccCCCCCC----------------CCCCCCChhhh
Q 025215            2 LSNLKVFVIALLLKII------MKRRFSIIQWEALALLLIGISVNQLRSLPEG----------------TSALGLPVATG   59 (256)
Q Consensus         2 l~q~kil~talls~l~------Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~----------------~~~~~~~~~~~   59 (256)
                      +.++.+++++++++++      +|||++++||.|+++.++|+.++...+....                ....+......
T Consensus       110 l~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (358)
T PLN00411        110 ISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLI  189 (358)
T ss_pred             HHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHH
Confidence            4678899999999999      6999999999999999999988765332110                00001112245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHh
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA  139 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a  139 (256)
                      |.+++++++++||++.++.++..++++  +....+.+...++.+   +........++.........++... ..+++.+
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~  263 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSI---VTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMA  263 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHH---HHHHHHHHHccCCcccceeccchHH-HHHHHHH
Confidence            999999999999999999999887752  222333333333322   2222222233221111122233322 2344554


Q ss_pred             hhh----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          140 AQG----ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       140 ~~g----~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +..    .+..+..|+.++...+....+.++++.+++++++||++++.+++|+++|+.|+++..+.
T Consensus       264 i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        264 IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            432    22223455666666666667888999999999999999999999999999999998764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.71  E-value=1.4e-15  Score=139.28  Aligned_cols=186  Identities=13%  Similarity=0.234  Sum_probs=132.9

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK   83 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk   83 (256)
                      -+.++++++++++++|||+++++|.++++.++|+.+...++.         +.+..|+++.+++++++++++++.||.++
T Consensus       148 a~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~  218 (350)
T PTZ00343        148 AAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------HFTWLAFWCAMLSNLGSSLRSIFAKKTMK  218 (350)
T ss_pred             HhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            367899999999999999999999999999999999875332         12346999999999999999999999987


Q ss_pred             ccCCC--ChhHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcchh-------hcCCch-hHHHHHHHHhhhhHHHH----H
Q 025215           84 SQYDT--SIYHQNLFL--YGYGAIFNFLGIVITAMFKGPSSFDI-------LQGHSK-ATMLLICNNAAQGILSS----F  147 (256)
Q Consensus        84 ~~~~~--s~~~~~~~l--~~~g~i~~~~~~~~~~~~~g~~~~~~-------~~g~~~-~~~~~i~~~a~~g~~v~----~  147 (256)
                      +++..  +....|.+.  ..+|.++.+|..+.   .|+......       +..+.+ ..+..++..++...+..    .
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~  295 (350)
T PTZ00343        219 NKSEIGENLTASNIYMLLTLIASLISLPLVLF---FEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFY  295 (350)
T ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64211  122233332  45666666665432   232110111       111111 11112223333333333    3


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          148 FFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       148 v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      .+++.++++.+.+..+.+++++++|++++||+++..+++|.++++.|+++|+..
T Consensus       296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            677788999999999999999999999999999999999999999999999864

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.69  E-value=4.4e-16  Score=139.49  Aligned_cols=187  Identities=11%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      +..+.++++++++++++|||+++++|.++++.++|+.+...++.         +....|+++.++++++++++.++.||.
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~---------~~~~~G~~~~l~a~~~~a~~~v~~k~~  167 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL---------SFNWAGFLSAMISNITFVSRNIFSKKA  167 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc---------cccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34578999999999999999999999999999999987642221         123469999999999999999999998


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhhcC---Cch-hHHHHHHHHhh-----hhHHHHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQG---HSK-ATMLLICNNAA-----QGILSSFFFK  150 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~--~~~~~~g---~~~-~~~~~i~~~a~-----~g~~v~~v~k  150 (256)
                      .+++ +.+......+....+.++.+|...   ..++..  ..+..+.   ... ..|..++..++     .+.......|
T Consensus       168 ~~~~-~~~~~~~~~~~~~~~~~~l~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  243 (302)
T TIGR00817       168 MTIK-SLDKTNLYAYISIMSLFLLSPPAF---ITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLG  243 (302)
T ss_pred             hccC-CCCcccHHHHHHHHHHHHHHHHHH---HHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7732 123344444445556555444432   233321  0011110   111 12221222221     1122224577


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          151 YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       151 y~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +.++.+.+....+.++++++++++++||+++..+++|.++++.|+++|++.
T Consensus       244 ~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       244 RVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             cCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999875

specificities overlap.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=131.99  Aligned_cols=200  Identities=16%  Similarity=0.170  Sum_probs=146.8

Q ss_pred             CCcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCC-CCChhhhHHHHHHHHHHHHHHHHHHHH
Q 025215            1 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL-GLPVATGAYLYTLIFVTVPSLASVFNE   79 (256)
Q Consensus         1 ~l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~-~~~~~~~G~l~~l~a~~~sala~V~~e   79 (256)
                      |+....++|+++|+..+|+|+++.+||+++....+|++++...+....+... +.+....|+++++.+.++-|++-|++|
T Consensus       117 MlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Ee  196 (372)
T KOG3912|consen  117 MLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEE  196 (372)
T ss_pred             HhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999876532211111 122344699999999999999999999


Q ss_pred             HHhhccCCCChhHHHHHHHHHH-HHHHHHHHHHHHHhcCCC----cchhhcCC----------chhHH-H--HHHHHhhh
Q 025215           80 YALKSQYDTSIYHQNLFLYGYG-AIFNFLGIVITAMFKGPS----SFDILQGH----------SKATM-L--LICNNAAQ  141 (256)
Q Consensus        80 ~~lk~~~~~s~~~~~~~l~~~g-~i~~~~~~~~~~~~~g~~----~~~~~~g~----------~~~~~-~--~i~~~a~~  141 (256)
                      |.+|+. ++++..---+-++|| .++++.+.....+..|..    +.+.++.|          +.... +  .+...|+.
T Consensus       197 k~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAff  275 (372)
T KOG3912|consen  197 KQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFF  275 (372)
T ss_pred             hhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeee
Confidence            999986 566665555668888 455554444333334421    11222211          11111 1  11223333


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          142 GILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       142 g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +..--.+.|+.++.++.....+++.+.++++..+++|.+...|+.|+.+.+.|+.+|+..
T Consensus       276 NfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  276 NFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             eehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444446789999999999999999999999999999999999999999999999999874

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.66  E-value=9.6e-15  Score=127.38  Aligned_cols=176  Identities=16%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      +.++.++++++++.+++|||++++||.++++.++|+.++..++..        .....|+.+.++++++++.++++.||.
T Consensus        79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~--------~~~~~G~~~~l~a~~~~a~~~~~~k~~  150 (260)
T TIGR00950        79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL--------SINPAGLLLGLGSGISFALGTVLYKRL  150 (260)
T ss_pred             HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc--------cccHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            356889999999999999999999999999999999988654311        122359999999999999999999998


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHH-----HHHHhhhhHHHHHHHHHHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL-----ICNNAAQGILSSFFFKYADTIL  156 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~-----i~~~a~~g~~v~~v~ky~~~i~  156 (256)
                      .++. +.+....+.+.+.++.++..+...    ..++..  ..   +...|..     ++...++..+.....|+.+...
T Consensus       151 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  220 (260)
T TIGR00950       151 VKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP--QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA  220 (260)
T ss_pred             hhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC--Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence            7653 222222332334455444333322    222211  11   2223322     3334445555556678888877


Q ss_pred             HHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 025215          157 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM  195 (256)
Q Consensus       157 k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv  195 (256)
                      ......+.++++.+++++++||+++..+++|..+++.|+
T Consensus       221 ~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       221 ASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            888888999999999999999999999999999999986

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.62  E-value=3.5e-14  Score=127.00  Aligned_cols=184  Identities=13%  Similarity=0.060  Sum_probs=124.1

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCC-CC-CCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG-TS-ALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~-~~-~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      .+.++++++++++++|||++++||.++++.++|+.++..++.+.+ .+ ..+......|+++.+++++++|+++++.||.
T Consensus        99 ~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~  178 (295)
T PRK11689         99 YLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKY  178 (295)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhc
Confidence            466999999999999999999999999999999988775542110 00 0011112359999999999999999999998


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhh----hhHHHHHHHHHHHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAA----QGILSSFFFKYADTILK  157 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~----~g~~v~~v~ky~~~i~k  157 (256)
                      .++.  .+. .  ... ..+.++..+.    ...++..    ....++..|..+++.++    +..+....+|+.++...
T Consensus       179 ~~~~--~~~-~--~~~-~~~~~~l~~~----~~~~~~~----~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~  244 (295)
T PRK11689        179 ARGK--NGI-T--LFF-ILTALALWIK----YFLSPQP----AMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLL  244 (295)
T ss_pred             cCCC--Cch-h--HHH-HHHHHHHHHH----HHHhcCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            5553  122 1  111 1222211111    1122221    11233344444444443    23334455777777777


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +....+.|+++.+++++++||+++..+++|.++++.|+++....
T Consensus       245 s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        245 ATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            77788899999999999999999999999999999999776553

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.60  E-value=9.6e-14  Score=123.96  Aligned_cols=179  Identities=12%  Similarity=0.065  Sum_probs=123.5

Q ss_pred             cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 025215            3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL   82 (256)
Q Consensus         3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~l   82 (256)
                      ..+.++++++++++ +|||++++||.|+++.++|+.++..++..        +....|+++.+++++++|+++++.||..
T Consensus       103 ~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~~~~G~l~~l~a~~~~a~~~~~~~~~~  173 (292)
T PRK11272        103 VATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SGNPWGAILILIASASWAFGSVWSSRLP  173 (292)
T ss_pred             HHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------ccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45789999999985 79999999999999999999888644211        1223599999999999999999998864


Q ss_pred             hccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhhhH-----HHHHHHHHHHHHHH
Q 025215           83 KSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGI-----LSSFFFKYADTILK  157 (256)
Q Consensus        83 k~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~-----~v~~v~ky~~~i~k  157 (256)
                      ++   .+......+ ...+.+...+..   ...++.    .....+...|..+++.++.+.     +.....|+.+....
T Consensus       174 ~~---~~~~~~~~~-~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~  242 (292)
T PRK11272        174 LP---VGMMAGAAE-MLAAGVVLLIAS---LLSGER----LTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALA  242 (292)
T ss_pred             CC---cchHHHHHH-HHHHHHHHHHHH---HHcCCc----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            33   133322222 333333222221   111211    001113344555555555444     44444566666666


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +......++++.+++++++||+++..+++|+++++.|+++.+..
T Consensus       243 s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        243 TSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            66677889999999999999999999999999999999887664

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.54  E-value=1.5e-13  Score=122.03  Aligned_cols=179  Identities=12%  Similarity=0.154  Sum_probs=110.5

Q ss_pred             cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 025215            3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL   82 (256)
Q Consensus         3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~l   82 (256)
                      ..+.++++++++++++|||++++||.|+++.++|+.++..++...        ....|+.+.++++++++++.++.|+..
T Consensus        96 ~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~--------~~~~g~~~~l~aal~~a~~~i~~k~~~  167 (281)
T TIGR03340        96 ARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ--------HRRKAYAWALAAALGTAIYSLSDKAAA  167 (281)
T ss_pred             HhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc--------cchhHHHHHHHHHHHHHHhhhhccccc
Confidence            456799999999999999999999999999999998876543211        112377788999999999999887764


Q ss_pred             hccCCCChhHHHHHHHHHHHHHH-HHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHh-----hhhHHHHHHHHHHHHHH
Q 025215           83 KSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSFDILQGHSKATMLLICNNA-----AQGILSSFFFKYADTIL  156 (256)
Q Consensus        83 k~~~~~s~~~~~~~l~~~g~i~~-~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a-----~~g~~v~~v~ky~~~i~  156 (256)
                      ++.   +......+...++.++. .+........++. ...    .....+..+.+.+     ++..+....+|+.+...
T Consensus       168 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~  239 (281)
T TIGR03340       168 LGV---PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMF----PYARQILPSATLGGLMIGGAYALVLWAMTRLPVAT  239 (281)
T ss_pred             cch---hcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceE
Confidence            332   11111111112222221 2222211111211 100    0111122222222     23333333344444333


Q ss_pred             HHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHh
Q 025215          157 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ  197 (256)
Q Consensus       157 k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~l  197 (256)
                      ......+.++++.+++++++||+++..+++|.++++.|+++
T Consensus       240 ~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       240 VVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             EEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33334567899999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.1e-13  Score=119.90  Aligned_cols=199  Identities=17%  Similarity=0.209  Sum_probs=132.6

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCC----------CCCCChhhhHHHHHHHHHHHHHHH
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS----------ALGLPVATGAYLYTLIFVTVPSLA   74 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~----------~~~~~~~~~G~l~~l~a~~~sala   74 (256)
                      -.++.+++++++++|||++.+|+.+++++++|+++..+....+...          ......-.+|+.++..+.+.+|..
T Consensus       100 gsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  100 GSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             CcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999987655433211          111223347999999999999999


Q ss_pred             HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHH--H-------hcCCCcchhhcCC-chhHHHHHHHH-hhhhH
Q 025215           75 SVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITA--M-------FKGPSSFDILQGH-SKATMLLICNN-AAQGI  143 (256)
Q Consensus        75 ~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~--~-------~~g~~~~~~~~g~-~~~~~~~i~~~-a~~g~  143 (256)
                      ++|+|..+|++.+.  |..+++   +...+++|+++...  +       +..++-.-...|. -+..|..++.+ ..+..
T Consensus       180 giyqE~~Y~kyGKh--~~EalF---ytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~  254 (330)
T KOG1583|consen  180 GIYQETTYQKYGKH--WKEALF---YTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYF  254 (330)
T ss_pred             HHHHHHHHHHhcCC--hHHHHH---HHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHH
Confidence            99999999997433  344444   55666777765311  0       0010000001111 13344444444 44566


Q ss_pred             HHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 025215          144 LSSFFFKYA---DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDE  208 (256)
Q Consensus       144 ~v~~v~ky~---~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~~~~~  208 (256)
                      |+..|+-..   ++.+.+...+++-.++.++|+.+|.++++++..+|+++|++|+.+|.....++|+.
T Consensus       255 CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~~~  322 (330)
T KOG1583|consen  255 CIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPKAT  322 (330)
T ss_pred             HHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            666653211   11222222345557899999999999999999999999999999998866666643

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.48  E-value=2.8e-12  Score=114.75  Aligned_cols=178  Identities=12%  Similarity=0.125  Sum_probs=118.8

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      +..+.++++++++++++|||++++||.++++.++|+.++..++.   +    .      .+..+++++++|++.++.||.
T Consensus       105 l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~---~----~------~~~~l~aa~~~a~~~i~~r~~  171 (296)
T PRK15430        105 GYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG---S----L------PIIALGLAFSFAFYGLVRKKI  171 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC---C----c------cHHHHHHHHHHHHHHHHHHhc
Confidence            34678999999999999999999999999999999988764321   0    1      134677889999999998886


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHH----HHHHhhhhHHHHHHHHHHHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL----ICNNAAQGILSSFFFKYADTILK  157 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~----i~~~a~~g~~v~~v~ky~~~i~k  157 (256)
                      .++. .......+.+...++.+    ..+.  .....  .......++..+..    .+..+++..+....+|+.++...
T Consensus       172 ~~~~-~~~~~~~~~~~~~~~~~----~~~~--~~~~~--~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~  242 (296)
T PRK15430        172 AVEA-QTGMLIETMWLLPVAAI----YLFA--IADSS--TSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTL  242 (296)
T ss_pred             CCCC-chhHHHHHHHHHHHHHH----HHHH--HccCC--cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            3321 11222333333223222    1110  01111  00111111111111    12344556677777888888888


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +....+.++++.+.+++++||+++..+++|+++++.|+.++...
T Consensus       243 s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        243 GFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999998887666543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.41  E-value=1.9e-12  Score=110.13  Aligned_cols=190  Identities=14%  Similarity=0.152  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKS   84 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~   84 (256)
                      .|++-..++.+++.+++++|+++++++++++||++.-.++...++.+  ......|-++++++-..-++.++..|++.+.
T Consensus       120 cKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e--~~t~g~GElLL~lSL~mDGlTg~~Qdrira~  197 (337)
T KOG1580|consen  120 CKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE--DKTFGFGELLLILSLAMDGLTGSIQDRIRAS  197 (337)
T ss_pred             CCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc--ccccchHHHHHHHHHHhcccchhHHHHHHHh
Confidence            57788899999999999999999999999999999988764332110  0112258899999999999999999998766


Q ss_pred             cCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---cCCch--hHH-HHHHHHhhhhHHHHHHHHHHHHHHH
Q 025215           85 QYDTS-IYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDIL---QGHSK--ATM-LLICNNAAQGILSSFFFKYADTILK  157 (256)
Q Consensus        85 ~~~~s-~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~---~g~~~--~~~-~~i~~~a~~g~~v~~v~ky~~~i~k  157 (256)
                      +...+ -++.+.  -+|+.+.....++    +.|+ .++++   +.++.  +.. +..+..+.|++++....-+.+..++
T Consensus       198 yq~~g~~MM~~~--NlwStL~Lg~g~l----fTGE-lweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtC  270 (337)
T KOG1580|consen  198 YQRTGTSMMFYT--NLWSTLYLGAGLL----FTGE-LWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTC  270 (337)
T ss_pred             hccCchhhHHHH--HHHHHHHhhhhhe----ehhh-HHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeE
Confidence            42211 222222  2456554333333    4454 22222   23332  222 2235566688888877778888888


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCC
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS  203 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~  203 (256)
                      +..++.+-.+|++.|+++|++|++..|++|..+|+.+...-....+
T Consensus       271 SivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK  316 (337)
T KOG1580|consen  271 SIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK  316 (337)
T ss_pred             EEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence            9999999999999999999999999999999999999977655433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.40  E-value=3.9e-11  Score=107.27  Aligned_cols=172  Identities=12%  Similarity=-0.007  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKS   84 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~   84 (256)
                      +.++++++++    +||.++.+|  +.+.++|+.++...+.+.+    +  ....|+++.+++++++|++.++.||..++
T Consensus       106 t~Pi~~~ll~----~~~~~~~~~--~~i~~~Gv~li~~~~~~~~----~--~~~~G~ll~l~aa~~~a~~~v~~r~~~~~  173 (293)
T PRK10532        106 TGPLAVALFS----SRRPVDFVW--VVLAVLGLWFLLPLGQDVS----H--VDLTGAALALGAGACWAIYILSGQRAGAE  173 (293)
T ss_pred             HHHHHHHHHh----cCChHHHHH--HHHHHHHHheeeecCCCcc----c--CChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3455555544    366555554  5667899887654332111    1  12359999999999999999999998665


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHH-----HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025215           85 QYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM-----LLICNNAAQGILSSFFFKYADTILKKY  159 (256)
Q Consensus        85 ~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~-----~~i~~~a~~g~~v~~v~ky~~~i~k~~  159 (256)
                      .   +......+ ..++.++..+...    ..+..     ..+++..|     +.++...++..+..+.+|+.++...+.
T Consensus       174 ~---~~~~~~~~-~~~~~~~l~~~~~----~~~~~-----~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~  240 (293)
T PRK10532        174 H---GPATVAIG-SLIAALIFVPIGA----LQAGE-----ALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGT  240 (293)
T ss_pred             C---CchHHHHH-HHHHHHHHHHHHH----HccCc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence            3   22223222 3444443333221    22210     01223233     333334444445555677777777777


Q ss_pred             HhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          160 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       160 a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ...+.++++.+++++++||+++..+++|.++++.|+..+...
T Consensus       241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            888899999999999999999999999999999999888765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.37  E-value=1e-10  Score=102.44  Aligned_cols=180  Identities=18%  Similarity=0.157  Sum_probs=119.8

Q ss_pred             cchHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            3 SNLKVFVIALLLK-IIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         3 ~q~kil~talls~-l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      ..+.+++++++++ +++|||+++++|.++++.++|+.++..++.....     . ...|+++.++++++++++.++.|+.
T Consensus       103 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-----~-~~~g~~~~l~a~~~~a~~~~~~~~~  176 (292)
T COG0697         103 IGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-----L-SLLGLLLALAAALLWALYTALVKRL  176 (292)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-----H-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577899999997 7779999999999999999999999887753311     0 3469999999999999999999988


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhh-----hhHHHHHHHHHHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAA-----QGILSSFFFKYADTIL  156 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~-----~g~~v~~v~ky~~~i~  156 (256)
                      . +.  .+......+... +.    ............   +  ...+...|..+.+.++     +..+....+++.+...
T Consensus       177 ~-~~--~~~~~~~~~~~~-~~----~~~~~~~~~~~~---~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~  243 (292)
T COG0697         177 S-RL--GPVTLALLLQLL-LA----LLLLLLFFLSGF---G--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASL  243 (292)
T ss_pred             c-CC--ChHHHHHHHHHH-HH----HHHHHHHHhccc---c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            7 32  121111101111 11    111111111111   0  1112233333333333     3444444455555555


Q ss_pred             HHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          157 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       157 k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ........++++.+.+++++||+++..+++|.++++.|+.+.+..
T Consensus       244 ~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         244 VALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            555556788888889999999999999999999999999888765

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.3e-10  Score=102.24  Aligned_cols=191  Identities=17%  Similarity=0.230  Sum_probs=148.8

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKS   84 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~   84 (256)
                      .|++-++++..++.|+|+++..+++..+...|+.+..+.+..++.+..|-+....|+.++...-+.-|+.+...++++|+
T Consensus       118 cKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~  197 (327)
T KOG1581|consen  118 CKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKK  197 (327)
T ss_pred             hhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc
Confidence            58899999999999999999999999999999999877655443333344455689999999999999999999999996


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhhcCCchhHH---HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025215           85 QYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGHSKATM---LLICNNAAQGILSSFFFKYADTILKKY  159 (256)
Q Consensus        85 ~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~--~~~~~~g~~~~~~---~~i~~~a~~g~~v~~v~ky~~~i~k~~  159 (256)
                      . +.+.+.+-..+-+|+.+++...+.    .+|..  ...+...++...+   +.-...++|+..+.+.+..-.+++-..
T Consensus       198 ~-k~s~~~mM~~vNLf~~i~~~~~li----~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~  272 (327)
T KOG1581|consen  198 Y-KVSSLHMMFGVNLFSAILNGTYLI----LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTT  272 (327)
T ss_pred             C-CccHhHHHHHHHHHHHHHHHHhhh----cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHH
Confidence            4 667666666666788887775533    34432  2223333333223   333556778888888888888998888


Q ss_pred             HhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 025215          160 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       160 a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      .++.+-++++++|.++||++++..|.+|..+|+.|.++=..
T Consensus       273 I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  273 IMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence            88889999999999999999999999999999999865443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.21  E-value=3.3e-12  Score=114.73  Aligned_cols=188  Identities=15%  Similarity=0.224  Sum_probs=132.6

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKS   84 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~   84 (256)
                      +.+++|.++++++.+|+.++.-|++++..+.||.+....+.         ..+..|....+++.+..++++++.|+++++
T Consensus       118 ~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~  188 (316)
T KOG1441|consen  118 LMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---------SFNLFGFISAMISNLAFALRNILSKKLLTS  188 (316)
T ss_pred             hcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---------cccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            45889999999999999999999999999999999887553         234579999999999999999999999964


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHH--HhcCCCcch-hhcCCchhHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 025215           85 QYDTSIYHQNLFLYGYGAIFNFLGIVITA--MFKGPSSFD-ILQGHSKATMLLICNNAA---QGILSSFFFKYADTILKK  158 (256)
Q Consensus        85 ~~~~s~~~~~~~l~~~g~i~~~~~~~~~~--~~~g~~~~~-~~~g~~~~~~~~i~~~a~---~g~~v~~v~ky~~~i~k~  158 (256)
                      + +.+  ..++++..+-.++++..++...  ..++..-.+ ...+++...+..++++.+   .++....++...++++-.
T Consensus       189 ~-~~~--~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~  265 (316)
T KOG1441|consen  189 K-GES--LNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYS  265 (316)
T ss_pred             c-ccc--cCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhh
Confidence            3 123  2333433343444443333111  122221100 112333333333333322   345555666677777777


Q ss_pred             HHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCC
Q 025215          159 YSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSK  204 (256)
Q Consensus       159 ~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~  204 (256)
                      .+..+..++..+.|+++|++|+|+.+++|.++.+.|+++|++...+
T Consensus       266 V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~  311 (316)
T KOG1441|consen  266 VAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK  311 (316)
T ss_pred             hhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence            8887888888899999999999999999999999999999986433

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.13  E-value=2.8e-09  Score=85.66  Aligned_cols=138  Identities=16%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc----CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhc-CC--c
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQ----YDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD----ILQ-GH--S  128 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~----~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~----~~~-g~--~  128 (256)
                      |.++.++++++.|+..++.|+.+++.    .+.+.+....+....+.++.+|..+   ..|+.....    ... ..  +
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~---~~e~~~~~~~~~~~~~~~~~~~   77 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF---LLEGPQLSSFFSEIFGEELSSD   77 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHHHHhhhhhhcch
Confidence            67889999999999999999999883    2344455545555666665554443   234432111    111 11  2


Q ss_pred             hhHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 025215          129 KATMLLICNNA----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       129 ~~~~~~i~~~a----~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      ...+..++..+    ..++....+.|+.++++......++.+++.++|+++|||++|..+++|..+.+.|+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            22333333333    3456666778999999999999999999999999999999999999999999999999974

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.07  E-value=5.1e-09  Score=91.02  Aligned_cols=187  Identities=14%  Similarity=0.141  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKS   84 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~   84 (256)
                      +|++-..+.+.++-++|+.+..+.+-.++.+|+++..+.|..-++     +.+.+|+.++..|-++-|+-+-.+||.+|.
T Consensus       141 cKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP-----NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~  215 (367)
T KOG1582|consen  141 CKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP-----NFNLIGVMMISGALLADAVIGNVQEKAMKM  215 (367)
T ss_pred             hhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC-----CcceeeHHHHHHHHHHHHHhhHHHHHHHhh
Confidence            578888999999999999999999999999999999988854321     244579999999999999999999999998


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhhcCCchhHHHHHHHHhh-hhHHHH---HHHHHHHHHHHH
Q 025215           85 QYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGHSKATMLLICNNAA-QGILSS---FFFKYADTILKK  158 (256)
Q Consensus        85 ~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~--~~~~~~g~~~~~~~~i~~~a~-~g~~v~---~v~ky~~~i~k~  158 (256)
                      .+..+ .+.-+..|..|..+    +++.....|+-  .+.+...+++.++...+..+. +-+.+.   ...|-..+.+..
T Consensus       216 ~~~ss-~EmvfySy~iG~vf----lf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aa  290 (367)
T KOG1582|consen  216 NPASS-SEMVFYSYGIGFVF----LFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAA  290 (367)
T ss_pred             CCCCc-ceEEEeeecccHHH----HHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHH
Confidence            64333 33333334444443    33322334431  122333334445544433333 222222   234555666666


Q ss_pred             HHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          159 YSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       159 ~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ..++.+-.+|+++|+++|..|+|....-|..+|+.|+++-..+
T Consensus       291 tvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys  333 (367)
T KOG1582|consen  291 TVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS  333 (367)
T ss_pred             HHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence            6777788899999999999999999999999999999886554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.99  E-value=4.2e-08  Score=86.22  Aligned_cols=175  Identities=17%  Similarity=0.232  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKS   84 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~   84 (256)
                      .++++..+++.+++|||+++.||.|+++..+||..-.+...       ++|+.      .+.-|+..++++..-|++ |-
T Consensus       107 InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------~lpwv------al~la~sf~~Ygl~RK~~-~v  172 (293)
T COG2962         107 INPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------SLPWV------ALALALSFGLYGLLRKKL-KV  172 (293)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------CCcHH------HHHHHHHHHHHHHHHHhc-CC
Confidence            46899999999999999999999999999999988766543       23442      234456777777765543 44


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchh-HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHH
Q 025215           85 QYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA-TMLLICNNAAQG---ILSSFFFKYADTILKKYS  160 (256)
Q Consensus        85 ~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~-~~~~i~~~a~~g---~~v~~v~ky~~~i~k~~a  160 (256)
                      +...+.....+.+.-.+.+    .+   ...++. .+ +....+.. .+++++.-.+..   .+.+..-|...=.+-++.
T Consensus       173 ~a~~g~~lE~l~l~p~al~----yl---~~l~~~-~~-~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~l  243 (293)
T COG2962         173 DALTGLTLETLLLLPVALI----YL---LFLADS-GQ-FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFL  243 (293)
T ss_pred             chHHhHHHHHHHHhHHHHH----HH---HHHhcC-ch-hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3223444444333222221    11   112222 11 22212222 222222222222   222223444444556777


Q ss_pred             hHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          161 STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       161 ~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      +.+.+.+-.+++++++||+++..+++..+.+-.|+.+|....
T Consensus       244 qYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         244 QYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999998754

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.96  E-value=1.2e-10  Score=100.17  Aligned_cols=184  Identities=14%  Similarity=0.223  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 025215            7 VFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQY   86 (256)
Q Consensus         7 il~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~~~   86 (256)
                      ++...+++|++||-|+.+.|..|++.+..|+.++..+|...++...|. ....|+.++++++.+.|..++.+|.+.|+- 
T Consensus       115 ip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggs-np~~GD~lvi~GATlYaVSNv~EEflvkn~-  192 (336)
T KOG2766|consen  115 IPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGS-NPVKGDFLVIAGATLYAVSNVSEEFLVKNA-  192 (336)
T ss_pred             hHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCC-CCccCcEEEEecceeeeeccccHHHHHhcC-
Confidence            566788999999999999999999999999999887775444322222 233699999999999999999999999884 


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHH
Q 025215           87 DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFF-------FKYADTILKKY  159 (256)
Q Consensus        87 ~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v-------~ky~~~i~k~~  159 (256)
                        +....--++++||.+++.+-+.    ++.... .. -.|++   -...+.. ..++....       +|-.++..-+.
T Consensus       193 --d~~elm~~lgLfGaIIsaIQ~i----~~~~~~-~t-l~w~~---~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nl  260 (336)
T KOG2766|consen  193 --DRVELMGFLGLFGAIISAIQFI----FERHHV-ST-LHWDS---AIFLYLR-FALTMFLLYSLAPILIKTNSATMFNL  260 (336)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHh----hhccce-ee-EeehH---HHHHHHH-HHHHHHHHHHhhHHheecCCceEEEh
Confidence              4445555678999987765422    332100 00 11222   2112222 11111111       22111111111


Q ss_pred             HhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 025215          160 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP  209 (256)
Q Consensus       160 a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~~~~~~  209 (256)
                      ....+=..+.+.  ..||-+++|..++.++.+..|.++|..   |+|+++
T Consensus       261 slLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~---re~~~~  305 (336)
T KOG2766|consen  261 SLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST---REKDEE  305 (336)
T ss_pred             hHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec---cccCcH
Confidence            111122333333  678999999999999999999999943   555554

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.93  E-value=5.7e-08  Score=87.92  Aligned_cols=193  Identities=17%  Similarity=0.226  Sum_probs=125.5

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      ++.+.=+||-.++..+..||+++.+.+++++.+.|++++..++...++.. ......+|.++.+++++..|.+.+..+|-
T Consensus       191 lSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~-~a~~~llG~llaL~sA~~YavY~vllk~~  269 (416)
T KOG2765|consen  191 LSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL-PASRPLLGNLLALLSALLYAVYTVLLKRK  269 (416)
T ss_pred             hhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccC-CccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45556688999999999999999999999999999999998876442211 11123579999999999999999998876


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHH----HHHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHHHH-----HHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIV----ITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFF-----KYA  152 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~----~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~-----ky~  152 (256)
                      ..++. .-+-++. +.++.|. +++.++.    +-..+ +.+..+.-  .+...-.+++.+ +.|.+++=.+     -..
T Consensus       270 ~~~eg-~rvdi~l-ffGfvGL-fnllllwP~l~iL~~~-~~e~F~lP--~~~q~~~vv~~~-ligtvvSDylW~~a~~lT  342 (416)
T KOG2765|consen  270 IGDEG-ERVDIQL-FFGFVGL-FNLLLLWPPLIILDFF-GEERFELP--SSTQFSLVVFNN-LIGTVVSDYLWAKAVLLT  342 (416)
T ss_pred             ccccc-ccccHHH-HHHHHHH-HHHHHHhHHHHHHHHh-ccCcccCC--CCceeEeeeHhh-HHHHHHHHHHHHHHHHhc
Confidence            55541 1222333 3344443 4443332    21222 32211111  111222223333 4444444222     123


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          153 DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       153 ~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      +..+.+.+.++++.+++++..++=|.++++.+++|.+.|+.|-++.|.++
T Consensus       343 s~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  343 SPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             cchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            34445555566778899999999999999999999999999998888764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.90  E-value=7.2e-08  Score=85.19  Aligned_cols=195  Identities=16%  Similarity=0.235  Sum_probs=125.4

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      .-...++|.-+|+..|-=||.++.-..-+.++.+|+.+...++.+         .+..|.++++++++++|+.-.+.+++
T Consensus       116 ~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq---------f~i~Gf~lv~~aS~~sGlRW~~tQ~l  186 (349)
T KOG1443|consen  116 TKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ---------FNIEGFFLVLAASLLSGLRWAFTQML  186 (349)
T ss_pred             ccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc---------eeehhHHHHHHHHHhhhhhHHHHHHH
Confidence            345678999999998766999999999999999999998888753         23369999999999999999999999


Q ss_pred             hhccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---chhhcCCch-hHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025215           82 LKSQY--DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS---FDILQGHSK-ATMLLICNNAAQGILSSFFFKYADTI  155 (256)
Q Consensus        82 lk~~~--~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~---~~~~~g~~~-~~~~~i~~~a~~g~~v~~v~ky~~~i  155 (256)
                      +++++  ..++...-.++.-+   .....+++...+||...   ...|..++. ..+.++...+.+|... +.+-...-+
T Consensus       187 l~~~~~~~~~P~~ti~~l~p~---M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~~sEfl  262 (349)
T KOG1443|consen  187 LRNQPSAKRNPIDTIFHLQPW---MSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLEFSEFL  262 (349)
T ss_pred             HhcCccccCCCeeeHHHhhhH---HHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            98852  11221111111111   11222344456788631   122322222 2333334444455433 333333333


Q ss_pred             HHHHHh--------HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 025215          156 LKKYSS--------TVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP  209 (256)
Q Consensus       156 ~k~~a~--------~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~~~~~~  209 (256)
                      ++.-.+        -..-+.+.++++.+.+++++..-.+|..+++.|+.+|.+.++..|+++
T Consensus       263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~~~~~~~~~  324 (349)
T KOG1443|consen  263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNEPQNFKRKP  324 (349)
T ss_pred             eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccCccccccCC
Confidence            322222        223367889999999999999999999999999999955433444443

>TIGR00688 rarD rarD protein

Probab=98.83  E-value=2.3e-07  Score=81.11  Aligned_cols=150  Identities=10%  Similarity=0.013  Sum_probs=91.9

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      +.++.++++++++++++|||++++||.++++.++|+.++..++. +        ..    .+.++++++++.+.++.|+.
T Consensus       102 l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-~--------~~----~~~l~aa~~~a~~~i~~~~~  168 (256)
T TIGR00688       102 GYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-S--------LP----WEALVLAFSFTAYGLIRKAL  168 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-C--------ch----HHHHHHHHHHHHHHHHHhhc
Confidence            35678999999999999999999999999999999988754321 0        11    24677899999999999886


Q ss_pred             hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHH----HhhhhHHHHHHHHHHHHHHH
Q 025215           82 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICN----NAAQGILSSFFFKYADTILK  157 (256)
Q Consensus        82 lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~----~a~~g~~v~~v~ky~~~i~k  157 (256)
                      .+++   .  .+..    .+.+...|.........+.........  ...|..++.    ..++..+....+|+.++-.-
T Consensus       169 ~~~~---~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~  237 (256)
T TIGR00688       169 KNTD---L--AGFC----LETLSLMPVAIYYLLQTDFATVQQTNP--FPIWLLLVLAGLITGTPLLAFVIAANRLPLNLL  237 (256)
T ss_pred             CCCC---c--chHH----HHHHHHHHHHHHHHHHhccCcccccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            4321   1  1111    111111222211111111111000111  112222222    34455666666888888888


Q ss_pred             HHHhHHHHHHHHHHHHHH
Q 025215          158 KYSSTVATIFTGLASAAL  175 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~l  175 (256)
                      +....+.|+++.++++++
T Consensus       238 s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       238 GLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888888999999888764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.79  E-value=2.9e-07  Score=82.35  Aligned_cols=179  Identities=15%  Similarity=0.072  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQ----WEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEY   80 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~q----w~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~   80 (256)
                      +.+++.++++.+++||+.++++    +.|+++.++|+.++...+.++. +..+......|+.+.+++.++.+++.+..|+
T Consensus        95 ~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~  173 (290)
T TIGR00776        95 FQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA-GIKSEFNFKKGILLLLMSTIGYLVYVVVAKA  173 (290)
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6677889999999999999999    9999999999988766542211 0000011235999999999999999999986


Q ss_pred             HhhccCCCChhH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchh--HHHHHHHHhhhhHHHHHHHH-HHHH
Q 025215           81 ALKSQYDTSIYH---QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA--TMLLICNNAAQGILSSFFFK-YADT  154 (256)
Q Consensus        81 ~lk~~~~~s~~~---~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~--~~~~i~~~a~~g~~v~~v~k-y~~~  154 (256)
                      . + .  .+...   +..-+.+.+.+++.+.      .+ .+   .+.....+  ....++ ..++..+...-.+ +...
T Consensus       174 ~-~-~--~~~~~~~~~~~g~~~~~~~~~~~~------~~-~~---~~~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~  238 (290)
T TIGR00776       174 F-G-V--DGLSVLLPQAIGMVIGGIIFNLGH------IL-AK---PLKKYAILLNILPGLM-WGIGNFFYLFSAQPKVGV  238 (290)
T ss_pred             c-C-C--CcceehhHHHHHHHHHHHHHHHHH------hc-cc---chHHHHHHHHHHHHHH-HHHHHHHHHHHcccccch
Confidence            5 2 2  12222   2222222333332211      01 00   11110111  111222 2333444333345 6666


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhCCcchHHHH----HHHHHHHHHHHhhc
Q 025215          155 ILKKYSSTVATIFTGLASAALFGHTLTMNFI----LGISIVFISMHQFF  199 (256)
Q Consensus       155 i~k~~a~~~s~v~t~lls~~lfge~lt~~~~----iG~~lVi~gv~ly~  199 (256)
                      ......++..++.+.+.+++++||+.+..++    +|.++++.|+.+-.
T Consensus       239 ~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       239 ATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            6666777788999999999999999999999    99999999997653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=6.7e-09  Score=90.38  Aligned_cols=189  Identities=10%  Similarity=0.141  Sum_probs=141.5

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK   83 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk   83 (256)
                      .+..+||.++++++||+|-+..-..+..+++.|--+=.-.+..      .-+....|.++-+.++++-|+-++|.+|.+.
T Consensus       136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~------~~~ls~~GvifGVlaSl~vAlnaiytkk~l~  209 (347)
T KOG1442|consen  136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS------TGTLSWIGVIFGVLASLAVALNAIYTKKVLP  209 (347)
T ss_pred             chhhhHHHHhHHhhcccccccccceeehhheehheeccccccc------cCccchhhhHHHHHHHHHHHHHHHhhheecc
Confidence            3567899999999999999998888888777775332111110      1123457999999999999999999997664


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhhcCCchhHHHHHHHHhhhhHHHHHH----HHHHHHHHH
Q 025215           84 SQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS--FDILQGHSKATMLLICNNAAQGILSSFF----FKYADTILK  157 (256)
Q Consensus        84 ~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~--~~~~~g~~~~~~~~i~~~a~~g~~v~~v----~ky~~~i~k  157 (256)
                      .- +..+|.-.+..-.++.++.+|.+.    ..|+-+  .++-+-++++.|.+....++.|..+.++    .|-.+.++.
T Consensus       210 ~v-~~~iw~lt~ynnv~a~lLflpll~----lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplTh  284 (347)
T KOG1442|consen  210 PV-GDCIWRLTAYNNVNALLLFLPLLI----LNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTH  284 (347)
T ss_pred             cc-cCeehhhHHHHHHHHHHHHHHHHH----HcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEeccccee
Confidence            43 457888888888888887777765    344311  1111233677888888888888877777    566667777


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCC
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS  203 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~  203 (256)
                      +...+..-+.-.++++.+++|..+..-+.|-.+|+.|...|++..+
T Consensus       285 nISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~  330 (347)
T KOG1442|consen  285 NISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKE  330 (347)
T ss_pred             eecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHH
Confidence            7777777788889999999999999999999999999999998543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=7.2e-07  Score=79.45  Aligned_cols=188  Identities=12%  Similarity=0.180  Sum_probs=123.5

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA   81 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~   81 (256)
                      +.+..++.||+.-.+++|+|.++.-|.++....+|......++..         .+..|+.+++..++..+...++.||.
T Consensus       109 ~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s---------f~~~gY~w~~~n~~~~a~~~v~~kk~  179 (314)
T KOG1444|consen  109 FKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS---------FNLRGYSWALANCLTTAAFVVYVKKS  179 (314)
T ss_pred             HhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce---------ecchhHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999999999998877766532         22249999999999999999999998


Q ss_pred             hhccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-hhhcCC-chhHHHHHHHHhhhhHHHHHHHHHH----
Q 025215           82 LKSQY--DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-F-DILQGH-SKATMLLICNNAAQGILSSFFFKYA----  152 (256)
Q Consensus        82 lk~~~--~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~-~-~~~~g~-~~~~~~~i~~~a~~g~~v~~v~ky~----  152 (256)
                      .+...  +......|       .++++|.+.+....-|+.. . ..+..+ +..+|..+....+.|..+++..-+.    
T Consensus       180 vd~~~l~~~~lv~yN-------nl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~  252 (314)
T KOG1444|consen  180 VDSANLNKFGLVFYN-------NLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVN  252 (314)
T ss_pred             hccccccceeEEeeh-------hHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            76631  11111111       2222222222222223211 0 011111 2345666667777777666654332    


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCCC
Q 025215          153 DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV  205 (256)
Q Consensus       153 ~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~~  205 (256)
                      ++.+-...-......+.+....++|.++++.-++|..+-++|-.+|+....++
T Consensus       253 SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~  305 (314)
T KOG1444|consen  253 SATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK  305 (314)
T ss_pred             cccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence            33222222223335666777778899999999999999999999998864333

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.59  E-value=7.4e-08  Score=83.76  Aligned_cols=185  Identities=12%  Similarity=0.052  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCC-----CCChhhhHHHHHHHHHHHHHHHHHHHH
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL-----GLPVATGAYLYTLIFVTVPSLASVFNE   79 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~-----~~~~~~~G~l~~l~a~~~sala~V~~e   79 (256)
                      ..+++|+++++.+|||++|+..-++..+.+.||+++.-++.-.++.+.     +..-...|.+..+.+++..|---++.+
T Consensus       132 ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR  211 (346)
T KOG4510|consen  132 SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILR  211 (346)
T ss_pred             cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHH
Confidence            357899999999999999999999999999999999877643322111     111112365555655555554445556


Q ss_pred             HHhhccC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 025215           80 YALKSQY-DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI-CNNAAQGILSSFFFKYADTILK  157 (256)
Q Consensus        80 ~~lk~~~-~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i-~~~a~~g~~v~~v~ky~~~i~k  157 (256)
                      ++=|+-+ ..+.+..    ...+.+.+++....    -|..+. ..-|-+++....+ +...+++++...-++.-.+=-.
T Consensus       212 ~iGk~~h~~msvsyf----~~i~lV~s~I~~~~----ig~~~l-P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpv  282 (346)
T KOG4510|consen  212 YIGKNAHAIMSVSYF----SLITLVVSLIGCAS----IGAVQL-PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPV  282 (346)
T ss_pred             HhhccccEEEEehHH----HHHHHHHHHHHHhh----ccceec-CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCe
Confidence            6645521 1222222    23333333333211    121100 1112222211111 2223345555544433333233


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  198 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly  198 (256)
                      +..++.-++++.+-.+++|||-+|++.+.|+.+|+.++..-
T Consensus       283 aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  283 AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            45556677889999999999999999999999999887543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.40  E-value=4.4e-06  Score=63.87  Aligned_cols=123  Identities=17%  Similarity=0.206  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcC--CchhHHHHHHHHhhhhHHHH
Q 025215           69 TVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQG--HSKATMLLICNNAAQGILSS  146 (256)
Q Consensus        69 ~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g--~~~~~~~~i~~~a~~g~~v~  146 (256)
                      ++||...++.|+..|+.   ++...+.+-+..+.+ .++....   .+.. .......  .-......++..+++..+..
T Consensus         1 ~~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLI---LGRK-PFKNLSPRQWLWLLFLGLLGTALAYLLYF   72 (126)
T ss_pred             ceeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHh---hccc-cccCCChhhhhhhhHhhccceehHHHHHH
Confidence            36788899999988873   455555555555554 2222221   1211 1001111  11122223344556667777


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          147 FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       147 ~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                      ..+|+.+...........++++.++++++++|+++..+++|..+++.|+++.+
T Consensus        73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   73 YALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            77888888888888889999999999999999999999999999999997653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.23  E-value=0.00011  Score=58.00  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHH
Q 025215           59 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN  138 (256)
Q Consensus        59 ~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~  138 (256)
                      .|+++++.++++.+.+.+..|+-+++..+.+....        .+..+. ..    .+.          ..+.++.+...
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~--------~~~~~~-~~----~~p----------~~~i~lgl~~~   58 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD--------FIAALL-AF----GLA----------LRAVLLGLAGY   58 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH--------HHHHHH-HH----hcc----------HHHHHHHHHHH
Confidence            37889999999999999999988776422221110        010000 00    010          01344444444


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HhCCcchHHHHHHHHHHHHHHHhhcCCCC
Q 025215          139 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAA--LFGHTLTMNFILGISIVFISMHQFFSPLS  203 (256)
Q Consensus       139 a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~--lfge~lt~~~~iG~~lVi~gv~ly~~~~~  203 (256)
                      ++...+..+.+|+.+.-...-..+...+++.++++.  +|||++|+.+++|.++++.|+++.+++++
T Consensus        59 ~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         59 ALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            555555555566655333222223344556666664  89999999999999999999999877543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.05  E-value=3.7e-05  Score=65.61  Aligned_cols=192  Identities=11%  Similarity=0.142  Sum_probs=120.6

Q ss_pred             cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 025215            3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL   82 (256)
Q Consensus         3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~l   82 (256)
                      -|+.|+..|..-++++|.|.+.....+.++.+.......++|....+  ........|++++..-|+.++..-...|+..
T Consensus       101 KNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~--~~~~~lN~GY~Wm~~NclssaafVL~mrkri  178 (309)
T COG5070         101 KNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA--FKAQILNPGYLWMFTNCLSSAAFVLIMRKRI  178 (309)
T ss_pred             ccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH--HHhcccCCceEEEehhhHhHHHHHHHHHHhh
Confidence            46788999999999999999999999999999988887777653321  1111112599999999988887777777665


Q ss_pred             hccCCCChhHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHH----HHHHHHHHHHH
Q 025215           83 KSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQGHSKATMLLICNNAAQGILSS----FFFKYADTILK  157 (256)
Q Consensus        83 k~~~~~s~~~~~~~l~~~g~i~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~----~v~ky~~~i~k  157 (256)
                      |-.....     ...-.+.-++++|.++. +.++|+..+.+.-.+.+.-....++-.++....++    +..|-.++.+-
T Consensus       179 ~ltNf~d-----~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTty  253 (309)
T COG5070         179 KLTNFKD-----FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTY  253 (309)
T ss_pred             cccccch-----hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHH
Confidence            5421111     11123445555665533 33456543433445554433222233333333333    33333333333


Q ss_pred             HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          158 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       158 ~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ...-++.-.-..+.+..+||+|.+...+....+=.++-.+|...
T Consensus       254 SMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava  297 (309)
T COG5070         254 SMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA  297 (309)
T ss_pred             HHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            33334444567789999999999999999988888777788764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.01  E-value=0.00049  Score=60.78  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWE----ALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNE   79 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~----al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e   79 (256)
                      .++++.+++.++++++|--+..+|.    |++++++|+.+...++.+++....+ ....-|+..++++.+.+..+.+..+
T Consensus        80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~-~~~~kgi~~Ll~stigy~~Y~~~~~  158 (269)
T PF06800_consen   80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSK-SNMKKGILALLISTIGYWIYSVIPK  158 (269)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccc-cchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999988888876    8999999999988877654321111 1122488899999999988888865


Q ss_pred             HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025215           80 YALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKY  159 (256)
Q Consensus        80 ~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~ky~~~i~k~~  159 (256)
                      .. +-++..-+.-|.+-+.+.+.+++.        ...   ...++..++..++.=+.-+++++..-...+. ..+..+|
T Consensus       159 ~~-~~~~~~~~lPqaiGm~i~a~i~~~--------~~~---~~~~~k~~~~nil~G~~w~ignl~~~is~~~-~G~a~af  225 (269)
T PF06800_consen  159 AF-HVSGWSAFLPQAIGMLIGAFIFNL--------FSK---KPFFEKKSWKNILTGLIWGIGNLFYLISAQK-NGVATAF  225 (269)
T ss_pred             hc-CCChhHhHHHHHHHHHHHHHHHhh--------ccc---ccccccchHHhhHHHHHHHHHHHHHHHhHHh-ccchhhh
Confidence            42 222111122222222222222111        111   1123322222222112223333332222221 1222222


Q ss_pred             H-hHHHHHHHHHHHHHHhCCcchH----HHHHHHHHHHHHHHh
Q 025215          160 S-STVATIFTGLASAALFGHTLTM----NFILGISIVFISMHQ  197 (256)
Q Consensus       160 a-~~~s~v~t~lls~~lfge~lt~----~~~iG~~lVi~gv~l  197 (256)
                      . +-++++++.+-++++++|+=+.    ..++|.++++.|..+
T Consensus       226 ~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  226 TLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            2 3467899999999999998664    467888888887643

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.95  E-value=8.9e-05  Score=57.91  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhh
Q 025215           61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAA  140 (256)
Q Consensus        61 ~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~  140 (256)
                      ..+.+++++.+++..++.|--+++.   ++...+.--.....++.....    ...|..+..  ...+...|+.+..+++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~----~~~g~~~~~--~~~~~k~~lflilSGl   75 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVL----LVTGNWQAG--GEIGPKSWLFLILSGL   75 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHH----HhcCceecc--cccCcceehhhhHHHH
Confidence            4577889999999999888777753   222222221222222211111    234432211  1123444444444443


Q ss_pred             hhHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 025215          141 QGILSSFFFKYADTILKKY------SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  198 (256)
Q Consensus       141 ~g~~v~~v~ky~~~i~k~~------a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly  198 (256)
                      .+-.....  |..++.+.-      ....+++++.++|++++||++|..+.+|..++.+|..+-
T Consensus        76 a~glswl~--Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          76 AGGLSWLL--YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHHHHH--HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            22211111  223333333      346788999999999999999999999999999998654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.95  E-value=0.00013  Score=61.17  Aligned_cols=183  Identities=15%  Similarity=0.148  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025215            6 KVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQ   85 (256)
Q Consensus         6 kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~~   85 (256)
                      +-.|.-++++..||.|+...+..+.++...|++++.+.+..-       ....+|+.+.+.+++.+|++-|..|+...+-
T Consensus        89 NaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen   89 NAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------ADEIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             hHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            346777899999999999999999999999999888665311       1345799999999999999999999887652


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHH---HhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHHHHH----HHHHHHHH
Q 025215           86 YDTSIYHQNLFLYGYGAIFNFLGIVITA---MFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFK----YADTILKK  158 (256)
Q Consensus        86 ~~~s~~~~~~~l~~~g~i~~~~~~~~~~---~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~k----y~~~i~k~  158 (256)
                         ++-...-+++..|. +|+.....+.   -+.|.+....|..   ..|.-....+.-.+...+..+    ..+.++-+
T Consensus       162 ---n~Gdaa~FmS~LGF-~NL~~~~~~~lIL~~T~VE~~qsFA~---~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilIS  234 (290)
T KOG4314|consen  162 ---NFGDAAHFMSCLGF-FNLCFISFPALILAFTGVEHLQSFAA---APWGCLCGAAGLSLAFNFLINFGIALLNPILIS  234 (290)
T ss_pred             ---cchhHHHHHHHHHH-HHHHHHhhhHHHHHHhchHHHHHHhh---CCchhhhhHHHHHHHHhhheeehhhhhchhhhe
Confidence               22222222222221 2222211111   1333322222221   122222111111111111111    12233333


Q ss_pred             HHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          159 YSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       159 ~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      .....++........++-+-.++..++.|.+++.+|-.+.-.|+
T Consensus       235 iG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  235 IGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             ehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            33333444556667666677899999999999999998877664

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.89  E-value=0.00057  Score=60.57  Aligned_cols=130  Identities=10%  Similarity=-0.026  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHH----HH
Q 025215           61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL----IC  136 (256)
Q Consensus        61 ~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~----i~  136 (256)
                      +++.+++++++|...+..|+..+++   +.. + .+.+..+.++.+|...    ....+  ..+...+...|..    .+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~   71 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGL----WYLAQ--VGWSRLPATFWLLLAISAV   71 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHH----Hhccc--CCCCCcchhhHHHHHHHHH
Confidence            4677889999999999998776663   221 2 2222333333333222    11100  0011111111211    22


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          137 NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       137 ~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ..+.+..+....+++.+.-.........++++.+++.++++|+++..+++|.++++.|+.+-..+
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            33344455555567766665555566789999999999999999999999999999999876543

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.70  E-value=5.2e-05  Score=58.16  Aligned_cols=45  Identities=31%  Similarity=0.471  Sum_probs=41.3

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCC
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP   46 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~   46 (256)
                      +.++.++++++++++++|||+++++|.++++.++|++++..++..
T Consensus        66 i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   66 IFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            457899999999999999999999999999999999999887753

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.64  E-value=0.0031  Score=56.38  Aligned_cols=134  Identities=8%  Similarity=0.009  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--hhhcCCchhHH--HH
Q 025215           59 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF--DILQGHSKATM--LL  134 (256)
Q Consensus        59 ~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~--~~~~g~~~~~~--~~  134 (256)
                      .|++++++++++|+...++.|.. .+   .++.....+-.+++.++.++...    ..++...  ..+.......+  ..
T Consensus         8 ~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   79 (296)
T PRK15430          8 QGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMS----ICRQWSYLKTLIQTPQKIFMLAVS   79 (296)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHcCHHHHHHHHHH
Confidence            59999999999999999999654 22   34444444434555543333222    1121100  01111111111  22


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 025215          135 ICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       135 i~~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      .+..+....+..+..+|.............++++.+++.++++|+++..+++|.++.+.|+.+...
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            233444555566667777777777778889999999999999999999999999999999987653

>TIGR00688 rarD rarD protein

Probab=97.60  E-value=0.0043  Score=54.06  Aligned_cols=132  Identities=7%  Similarity=0.008  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhhcCCchh-HHHHH-
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS--FDILQGHSKA-TMLLI-  135 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~--~~~~~g~~~~-~~~~i-  135 (256)
                      |++++++++++|+..++..|.+ .+   .++.....+=.+++.++.++...    ..+...  ...+...+.. .+..+ 
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   74 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVT----LFRQWAALIERLKRIQKRPLILSLL   74 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHH----HHcchHHHHHHHhCcccchHHHHHH
Confidence            7889999999999999999863 22   34443333334444443222221    111100  0011111111 11111 


Q ss_pred             ---HHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          136 ---CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       136 ---~~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                         +..+....+.....+|.+...........++++.+++.++++|+++..+++|.++.+.|+.+-.
T Consensus        75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence               1123334445555677666666677778999999999999999999999999999999987543

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.36  E-value=0.00048  Score=62.03  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=35.4

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccC
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR   43 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~   43 (256)
                      -+.++++++++..++|||++++.|.|.++.++|+.++..-
T Consensus        84 ~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   84 ALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             hhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            3568899999999999999999999999999998876543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.35  E-value=0.029  Score=49.01  Aligned_cols=164  Identities=15%  Similarity=0.084  Sum_probs=89.1

Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHH
Q 025215           15 KIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQN   94 (256)
Q Consensus        15 ~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~   94 (256)
                      ..+.-||..-.-|.++.+  .|+.+..-.+..      ..+....|..+.+.+..||+.+=+..+|.-+..+  .  .+.
T Consensus       112 A~~~sRr~~d~vwvaLAv--lGi~lL~p~~~~------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~--g--~~g  179 (292)
T COG5006         112 ALLSSRRLRDFVWVALAV--LGIWLLLPLGQS------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH--G--TAG  179 (292)
T ss_pred             HHHhccchhhHHHHHHHH--HHHHhheeccCC------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC--C--chH
Confidence            344557776666776655  454444322211      1123447999999999999999998888754321  1  122


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHH-----HHHHHHHHHHHHHhHHHHHHH
Q 025215           95 LFL-YGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----FFKYADTILKKYSSTVATIFT  168 (256)
Q Consensus        95 ~~l-~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~-----v~ky~~~i~k~~a~~~s~v~t  168 (256)
                      .-. ..++.++.+|.-.   ...|   ..++   ++.....-+..++-+..+-|     .++....-.-..-.++.+.+.
T Consensus       180 ~a~gm~vAaviv~Pig~---~~ag---~~l~---~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~a  250 (292)
T COG5006         180 VAVGMLVAALIVLPIGA---AQAG---PALF---SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALA  250 (292)
T ss_pred             HHHHHHHHHHHHhhhhh---hhcc---hhhc---ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHH
Confidence            211 1222232222211   1111   1122   22222111222222222222     233333333333345677899


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          169 GLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       169 ~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                      .+.+.+++||.+|..|++|...|+.++-=..
T Consensus       251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         251 ALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999998884333

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.28  E-value=0.013  Score=52.46  Aligned_cols=122  Identities=15%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHH-HHHHHHhhhhHHHHHHHHH
Q 025215           74 ASVFNEYALKSQYDT-SIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM-LLICNNAAQGILSSFFFKY  151 (256)
Q Consensus        74 a~V~~e~~lk~~~~~-s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~-~~i~~~a~~g~~v~~v~ky  151 (256)
                      .+++.|++.++++.. ..+.-+....++..+++.+....   .....    ...-+...+ ...+...+...+....++|
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~   87 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSL---FKFPK----SRKIPLKKYAILSFLFFLASVLSNAALKY   87 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHh---ccccC----CCcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            458899999886444 23333333344444443332221   11010    011112222 2234455556666677888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          152 ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       152 ~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      .+--+....-+.+++.+++++.++++++.+..+.++.+++.+|+.++...+
T Consensus        88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~  138 (303)
T PF08449_consen   88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD  138 (303)
T ss_pred             CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence            887777777888999999999999999999999999999999999998764

; GO: 0055085 transmembrane transport

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.21  E-value=0.0055  Score=46.82  Aligned_cols=65  Identities=22%  Similarity=0.212  Sum_probs=51.4

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          136 CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       136 ~~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +.......+..+..+|... .-.....+.++++.+++.++|+|+++..+++|.++++.|+.+-..+
T Consensus        43 ~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   43 LGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            3333455566666778875 4445556899999999999999999999999999999999877664

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.19  E-value=0.0056  Score=47.70  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=47.0

Q ss_pred             HHHhhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          136 CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       136 ~~~a~~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ...++.-.+.+..+|+.+ ++.-+.-+.+..+.+.+.++++|||++|+.+++|.++++.|+..-+..
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            333334444455555533 222233345788899999999999999999999999999999887654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.14  E-value=0.0077  Score=46.20  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          161 STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       161 ~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +....+.+.+.+.++|+|++++.+++|.++++.|+..-+..
T Consensus        64 ~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34678899999999999999999999999999999887664

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.04  E-value=0.0067  Score=46.53  Aligned_cols=57  Identities=11%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          142 GILSSFFFKYADT-ILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       142 g~~v~~v~ky~~~-i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                      ..+....+|+.+- +.-... +..++.+.++|.++|||+++..+++|.++++.|+.+-.
T Consensus        51 ~~~~~~al~~iplg~Ay~~~-~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         51 MVLWLLVLQNVPVGIAYPML-SLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHhhCChHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3334444554432 222233 37889999999999999999999999999999997653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.00  E-value=0.017  Score=49.96  Aligned_cols=120  Identities=11%  Similarity=-0.002  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhhhHHHHHHHH
Q 025215           71 PSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFK  150 (256)
Q Consensus        71 sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~g~~v~~v~k  150 (256)
                      ||...+..|..++..  .+.+...+.-.+.+.++..+...    .. . ..   ..+........+.......+....++
T Consensus         1 Wg~~~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~----~~-~-~~---~~~~~~~~~~~~~~~l~~~~~~~a~~   69 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLR----RR-P-PL---KRLLRLLLLGALQIGVFYVLYFVAVK   69 (260)
T ss_pred             CcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHH----hc-c-CH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666665552  45555555545555544332211    11 1 00   11111222223444455555666677


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          151 YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       151 y~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      |.+.-.........++++.+++.++++|+++..+++|..+.++|+.+...+
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            877666677778899999999999999999999999999999999887654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.99  E-value=0.0012  Score=50.67  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=35.7

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhcc
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL   42 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~   42 (256)
                      ++.++.+++++++++|||++++||.++.+.++|++++..
T Consensus        71 ~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         71 SLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            477899999999999999999999999999999987753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.96  E-value=0.036  Score=49.43  Aligned_cols=129  Identities=15%  Similarity=0.061  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchh-HHHHHHHH
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA-TMLLICNN  138 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~-~~~~i~~~  138 (256)
                      ++++.++++++|+..-+..|..++.   .++......=+..+.++.++.      ...+.    .....+. .....+..
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~---~~P~~~~~~R~~~a~l~l~~~------~~~~~----~~~~~~~~~~~~~l~~   71 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSES---LGPVGGAAMIYSVSGLLLLLT------VGFPR----LRQFPKRYLLAGGLLF   71 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHHHH------ccccc----cccccHHHHHHHhHHH
Confidence            5778899999999998888877655   344444443344444432211      11110    0111111 11111112


Q ss_pred             hhhhHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          139 AAQGILSSFFFKY----ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       139 a~~g~~v~~v~ky----~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      .....+...-.+|    .++..........++++.+++.++++|+++..+++|.++.+.|+.+-..+
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            2222222222333    34444556677889999999999999999999999999999999877654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.94  E-value=0.041  Score=48.98  Aligned_cols=130  Identities=11%  Similarity=-0.017  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchh--HHHHHHHH
Q 025215           61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA--TMLLICNN  138 (256)
Q Consensus        61 ~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~--~~~~i~~~  138 (256)
                      .+..+..+++||...+..|..+..   .++..-...=+.++.++.++...    .++....   ...++.  ....++..
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~---~~p~~~~~~R~~~a~l~ll~~~~----~~~~~~~---~~~~~~~~~~~g~~~~   79 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVES---WPPLMMAGVRFLIAGILLLAFLL----LRGHPLP---TLRQWLNAALIGLLLL   79 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHH----HhCCCCC---cHHHHHHHHHHHHHHH
Confidence            456777889999999999876553   34444433334444443333221    2221110   000111  11112222


Q ss_pred             hhhhHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          139 AAQGILSSFFF-KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       139 a~~g~~v~~v~-ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +.+..+..+.. ++.++-.........++++.+++.+ ++|+++..+++|..+.+.|+++-..+
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            22223333333 4444444555667789999999975 79999999999999999999877543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.86  E-value=0.066  Score=49.43  Aligned_cols=132  Identities=14%  Similarity=0.077  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHh
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA  139 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a  139 (256)
                      -+..+++..++++-..+..+..+|..  .++......=...+.++.++...   ..+..+.   ....++..|..++..+
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~---~~~~~~~---~~~~~~~~~~~l~l~g   85 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLF---FTNRSRS---LPPLSVSILSKIGLLG   85 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHH---HHHHhcc---cCcchHHHHHHHHHHH
Confidence            35667778888888889999998774  33333222223333333222222   1121110   0111122222222222


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------hCCcchHHHHHHHHHHHHHHHhhc
Q 025215          140 ----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAAL------FGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       140 ----~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~l------fge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                          ....+...-++|.++...+...+..|+++.+++.++      ++|+++..+++|.++.+.|+.+-.
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~  155 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI  155 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence                223344555788888888888999999999999999      699999999999999999997644

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.80  E-value=0.076  Score=47.41  Aligned_cols=126  Identities=14%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhhh
Q 025215           62 LYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQ  141 (256)
Q Consensus        62 l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~~  141 (256)
                      ++.++++++|+...+..|..+.+   .++......=+..+.+..++  +    ....+. .    ........++.....
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~--~----~~~~~~-~----~~~~~~~g~~~~~~~   72 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIF--F----VARPKV-P----LNLLLGYGLTISFGQ   72 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHH--H----hcCCCC-c----hHHHHHHHHHHHHHH
Confidence            45788899999999999877654   34444333323333322111  1    111110 0    001111111111111


Q ss_pred             hHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          142 GILSSFFFKYA-DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       142 g~~v~~v~ky~-~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      ..+.....+|. .+-......+..++++.+++.++++|+++..+++|.++.+.|+.+-..+
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            11222233452 3333344566788999999999999999999999999999999776643

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.71  E-value=0.0026  Score=48.24  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=36.8

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhc
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ   41 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~   41 (256)
                      +.++.++++.+++++++||+++++||.|+++.+.|+.++.
T Consensus        86 ~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   86 LQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.68  E-value=0.03  Score=50.48  Aligned_cols=118  Identities=11%  Similarity=0.028  Sum_probs=74.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHH
Q 025215           57 ATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLIC  136 (256)
Q Consensus        57 ~~~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~  136 (256)
                      ..+|..+.++++++.+.+.++.||-.++.++.+.... -.      .                 .+.+.  ++..|..++
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-~~------~-----------------~~~l~--~~~W~~G~~   58 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-SG------G-----------------RSYLR--RPLWWIGLL   58 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ch------h-----------------hHHHh--hHHHHHHHH
Confidence            3479999999999999999999987766422111100 00      0                 00000  122233333


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 025215          137 NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       137 ~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      ..++|.++-...+.++...+-.-..+++++++.+++..+++|+++....+|.++++.|..+...
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            3344433322333355544444445689999999999999999999999999999999966543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.61  E-value=0.12  Score=46.19  Aligned_cols=61  Identities=10%  Similarity=0.095  Sum_probs=50.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          139 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       139 a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                      +....+....++|.+.-......+..++++.+++.++++|+++..+++|.++++.|+.+..
T Consensus        76 ~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        76 TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            3444455556778887777788888999999999999999999999999999999997654

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.58  E-value=0.16  Score=46.54  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          140 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       140 ~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      .++.++...++|.+-.......+.++++++++|++++++++++.+++|..+++.|+.+-...+
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            466666677788876666677788999999999999999999999999999999997766553

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.46  E-value=0.038  Score=41.99  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          140 AQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       140 ~~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +.-.+.+..+|+.+ ++.-+.=+.+.++.+.+.++++|+|+++..+++|..+++.|+..-+..
T Consensus        42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            33444445555533 232333356778899999999999999999999999999999776543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.34  E-value=0.41  Score=41.43  Aligned_cols=138  Identities=16%  Similarity=0.155  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHH
Q 025215           59 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN  138 (256)
Q Consensus        59 ~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~  138 (256)
                      .+....+...+.++......+...+..  .+.......-...+.++..   ... ..+..........+-+......+..
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVESL--DPFLFAAALRFLIAALLLL---PLL-LLEPRGLRPALRPWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHH---HHH-HhhcccccccccchHHHHHHHHHHH
Confidence            466777778888888888877665441  3333333322333333211   111 0111000000111001222223333


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          139 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASA-ALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       139 a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~-~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      +....+.....+|...-.........++++.+++. ++++|+++..+++|..+.+.|+.+...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~  145 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG  145 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence            44444444445556655556666788899999996 77799999999999999999999988864

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.29  E-value=0.18  Score=44.96  Aligned_cols=127  Identities=17%  Similarity=0.055  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHH-HH---
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML-LI---  135 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~-~i---  135 (256)
                      |+++.++++++|+..++..|++. +.  .+.+..  . ...+.++.....   ..+..+.    ++  .+..+. .+   
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~--~~~~~~--~-~~~g~l~~~~~~---~~~~~~~----~~--~~~~~~~g~l~G   66 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GG--PYSQTL--G-TTFGALILSIAI---AIFVLPE----FW--ALSIFLVGLLSG   66 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CC--HHHHHH--H-HHHHHHHHHHHH---HHHhCCc----cc--ccHHHHHHHHHH
Confidence            67888999999999999998764 21  122221  1 122222211111   1122211    11  111111 12   


Q ss_pred             HHHhhhhHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhCCcchHHH----HHHHHHHHHHHHhhcCC
Q 025215          136 CNNAAQGILSSFFFKYADTIL-KKYSSTVATIFTGLASAALFGHTLTMNF----ILGISIVFISMHQFFSP  201 (256)
Q Consensus       136 ~~~a~~g~~v~~v~ky~~~i~-k~~a~~~s~v~t~lls~~lfge~lt~~~----~iG~~lVi~gv~ly~~~  201 (256)
                      +.-+++++......||...-+ -...+...++++.+.+.++|+|+.+..+    ++|.++++.|+++....
T Consensus        67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            224455565556666654222 2233446778888999999999999999    99999999999887554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.18  E-value=0.07  Score=40.83  Aligned_cols=57  Identities=19%  Similarity=0.085  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 025215          142 GILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  198 (256)
Q Consensus       142 g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly  198 (256)
                      ..+.+..+|+.+ ++.-+.=+....+.+.+.+.++|+|++++.+++|.++++.|+..-
T Consensus        49 f~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         49 FSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            334444444432 222233345677889999999999999999999999999999764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.16  E-value=0.27  Score=45.16  Aligned_cols=54  Identities=11%  Similarity=0.092  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 025215          147 FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       147 ~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      ..+++.+.-......+.+|+++.+++.++++|+++..+++|.+++++|+.+-..
T Consensus       133 ~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        133 ISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            335566666666667789999999999999999999999999999999987653

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.14  E-value=0.078  Score=40.29  Aligned_cols=42  Identities=7%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             HHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 025215          159 YSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       159 ~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      .=+.+.++.+.+.++++|+|++++.+++|..+++.|+..-+.
T Consensus        61 vW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         61 VWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            334567788999999999999999999999999999977543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.08  E-value=0.55  Score=37.37  Aligned_cols=127  Identities=19%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHHhh
Q 025215           61 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAA  140 (256)
Q Consensus        61 ~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~a~  140 (256)
                      +++.+++-.+-++++.+|-++-|+.  .+++......+..|.++.....+.   .++. ....+.+.+|+.|..   -.+
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lG---G~l   73 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLG---GLL   73 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhcc---HHH
Confidence            4566777788888999998887763  356777777777777765544332   2322 222334445555442   111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHH-Hh---CCcchHHHHHHHHHHHHHHHh
Q 025215          141 QGILSSFFFKYADTILKKYSSTV-----ATIFTGLASAA-LF---GHTLTMNFILGISIVFISMHQ  197 (256)
Q Consensus       141 ~g~~v~~v~ky~~~i~k~~a~~~-----s~v~t~lls~~-lf---ge~lt~~~~iG~~lVi~gv~l  197 (256)
                      |...+.... +.-.......+..     .++.+.++..+ +|   .+++++..++|.++++.|+++
T Consensus        74 G~~~V~~~~-~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   74 GVFFVLSNI-ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            211111111 1111111111111     12233344443 33   368999999999999999864

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.89  E-value=0.16  Score=44.74  Aligned_cols=63  Identities=19%  Similarity=0.101  Sum_probs=37.4

Q ss_pred             hhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH-HhCCc-----chHHHHHHHHHHHHHHHhhcCC
Q 025215          139 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAA-LFGHT-----LTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       139 a~~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~-lfge~-----lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      +.|++++-.++|... ++--..-++...+..+..+-+ +||.+     -.+.-.+|.+++++|..+|...
T Consensus        66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi  135 (254)
T PF07857_consen   66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI  135 (254)
T ss_pred             hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence            445554444444332 222223334555666666644 77654     3456789999999999999764

The region concerned is approximately 280 residues long.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.87  E-value=0.22  Score=45.76  Aligned_cols=136  Identities=13%  Similarity=0.079  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcchhhcCCchhHHHHH-
Q 025215           58 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQGHSKATMLLI-  135 (256)
Q Consensus        58 ~~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~i-  135 (256)
                      .+|+++.+++++|++.-.+-.|| .|+-    -| +++|. ..++...+...+. ..+..+ .-.+.++..+...+... 
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~w-E~~W~-v~gi~~wl~~~~~~g~~~~~-~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKKW----SW-ETMWS-VGGIFSWLILPWLIAALLLP-DFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCCC----ch-hHHHH-HHHHHHHHHHHHHHHHHHhh-hHHHHHHhcCHHHHHHHH
Confidence            36999999999999987777765 3432    12 33354 4443222211111 111111 11123333444333222 


Q ss_pred             ---HHHhhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCc-------chHHHHHHHHHHHHHHHhhcCC
Q 025215          136 ---CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHT-------LTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       136 ---~~~a~~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~-------lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                         +.-++|++.....+||.. +...+.++....+.+.+...+++||=       -...-++|.+++++|+.+-...
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence               334457777777777765 45556667778899999999999852       2245788999999999887774

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.85  E-value=0.021  Score=43.47  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccC
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR   43 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~   43 (256)
                      .-++.+++.+++++||++++.|+.++.++++|++.....
T Consensus        65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            456789999999999999999999999999999887644

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.80  E-value=0.021  Score=43.36  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccC
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR   43 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~   43 (256)
                      .-++.|++.+++++||+++..|+.++.++++|++.....
T Consensus        66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            457889999999999999999999999999999887654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.73  E-value=0.026  Score=43.24  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS   44 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~   44 (256)
                      +..+.+++.+++++||++++.|+.++.++++|++.+...+
T Consensus        66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4577889999999999999999999999999999987644

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.71  E-value=0.026  Score=43.98  Aligned_cols=40  Identities=18%  Similarity=0.402  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS   44 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~   44 (256)
                      .-++.+++.+++++||++++.||.++.++++|++.+...+
T Consensus        66 iG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         66 IGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            4577889999999999999999999999999999887655

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.67  E-value=0.026  Score=43.48  Aligned_cols=67  Identities=16%  Similarity=0.252  Sum_probs=52.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHh
Q 025215          131 TMLLICNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ  197 (256)
Q Consensus       131 ~~~~i~~~a~~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~l  197 (256)
                      .+...+.+..|.+...+.+...| ++.-+.+++++-++|.+.+.++.+|..+...++|+.+++.|+.+
T Consensus        44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            33444556667776666666555 66677888999999999999888888899999999999999854

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.48  E-value=0.081  Score=39.14  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 025215          142 GILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV  191 (256)
Q Consensus       142 g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lV  191 (256)
                      -.+.+..+|+.+ ++.-+.-+...++.+.+++.++|||++|..+++|.+++
T Consensus        43 ~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   43 FYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            344444455543 22233345677889999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.37  E-value=0.036  Score=42.42  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhc
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ   41 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~   41 (256)
                      .-.+.+++.+++++||++++.||.++.++++|++...
T Consensus        71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4567889999999999999999999999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=95.25  E-value=0.049  Score=42.94  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             HHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHhHhccCCC
Q 025215            8 FVIALLLKI--IMKRRFSIIQWEALALLLIGISVNQLRSL   45 (256)
Q Consensus         8 l~talls~l--~Lk~rls~~qw~al~l~~~Gv~iv~~~~~   45 (256)
                      ..++++++.  ++||++++.||.|+++.++|+.++..++.
T Consensus        86 ~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         86 ALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            345555553  89999999999999999999999886543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.83  E-value=0.29  Score=42.77  Aligned_cols=66  Identities=20%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          137 NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       137 ~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      .-++++.+....++|.|+.+-.......+++|++++.++++.+++..|+++..+...|+.+....+
T Consensus        26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            345566666677889998888888889999999999999999999999999999999998877653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.02  E-value=0.2  Score=45.26  Aligned_cols=45  Identities=18%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCCCC
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP   46 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~~~   46 (256)
                      |+-+.++++|+++..+||||++..-.+|.++.++|..++......
T Consensus        96 LGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~  140 (335)
T KOG2922|consen   96 LGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK  140 (335)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence            456789999999999999999999999999999998776655433

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.59  E-value=3.3  Score=33.52  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHHHHH
Q 025215           59 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN  138 (256)
Q Consensus        59 ~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i~~~  138 (256)
                      +.++..+++-.+..+++..|-++.|..  .++..-....+..|+.+.+....   +.++........+.+||.|..   -
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~G---G   76 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIG---G   76 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHc---c
Confidence            356677788888899999999987664  24555555556666654333222   234332222223345555542   1


Q ss_pred             hhhhHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHH-HhC---CcchHHHHHHHHHHHHHHHhhcC
Q 025215          139 AAQGILSSFFF----KYADTILKKYSSTVATIFTGLASAA-LFG---HTLTMNFILGISIVFISMHQFFS  200 (256)
Q Consensus       139 a~~g~~v~~v~----ky~~~i~k~~a~~~s~v~t~lls~~-lfg---e~lt~~~~iG~~lVi~gv~ly~~  200 (256)
                      .+|.+.+..-.    |...+.+.....+-.++...++..+ +||   .+++...++|.++++.|+++...
T Consensus        77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            22222111111    1111111111111122333344333 343   56999999999999999776654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=92.49  E-value=0.13  Score=45.44  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=39.8

Q ss_pred             HHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          159 YSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       159 ~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      ..+-.+++++++++.++++|++|..-.+|..+-+.|+.+..+|+
T Consensus       128 vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  128 VITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             EEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            34456899999999999999999999999999999999998875

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=91.97  E-value=4.8  Score=35.99  Aligned_cols=131  Identities=8%  Similarity=0.010  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhc-CCchhHHHHHHHH
Q 025215           60 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQ-GHSKATMLLICNN  138 (256)
Q Consensus        60 G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l~~~g~i~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~i~~~  138 (256)
                      |+++.+.|-++|++.-.|.+-+-+.    +....-.+=-+++.++.+.....   .+..+  +..+ .-++..+......
T Consensus         8 Gil~~l~Ay~lwG~lp~y~kll~~~----~~~eIlahRviwS~~~~l~ll~~---~r~~~--~~~~~~~~p~~~~~~~l~   78 (293)
T COG2962           8 GILLALLAYLLWGLLPLYFKLLEPL----PATEILAHRVIWSFPFMLALLFL---LRQWR--ELKQLLKQPKTLLMLALT   78 (293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHH---HhhhH--HHHHHHhCcHHHHHHHHH
Confidence            8999999999999999988766333    32222222234555543332221   22111  1111 1133333332222


Q ss_pred             hh---hhHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          139 AA---QGILSS-FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       139 a~---~g~~v~-~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                      +.   .++.+. +..+....+-.+..=.+.+.+..+++.++++|+++..|.+..++...|+..-.
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~  143 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT  143 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            21   122111 11111122223344456789999999999999999999999999999985433

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.65  E-value=0.16  Score=45.81  Aligned_cols=74  Identities=11%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             chhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          128 SKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       128 ~~~~~~~i~~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      .+..|..++..++|-+.-...+-++..++-+--.+++++.+++++..+++|.+++.-++|+.+++.|.++-..+
T Consensus        64 ~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   64 EPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             hHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            35567777888888776666666778887777778999999999999999999999999999999999776554

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=90.19  E-value=0.65  Score=35.12  Aligned_cols=47  Identities=13%  Similarity=0.150  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 025215          152 ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  198 (256)
Q Consensus       152 ~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly  198 (256)
                      .-.-+|..-..++.++-...|+++++|+++++++.|+++++.+++.-
T Consensus        60 s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   60 SLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             CHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            33455667777777777788899999999999999999999998653

>TIGR00803 nst UDP-galactose transporter

Probab=90.14  E-value=4.2  Score=34.45  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             CcchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215            2 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS   44 (256)
Q Consensus         2 l~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~   44 (256)
                      .-|.+++++++..+.+.+||++..|+.+.++++.|++...+.+
T Consensus        10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~   52 (222)
T TIGR00803        10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGD   52 (222)
T ss_pred             HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhH
Confidence            3578999999999999999999999999999999998776654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=89.93  E-value=8.6  Score=35.27  Aligned_cols=135  Identities=11%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcchhhcCCchhHHHHH
Q 025215           58 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFL--YGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI  135 (256)
Q Consensus        58 ~~G~l~~l~a~~~sala~V~~e~~lk~~~~~s~~~~~~~l--~~~g~i~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~i  135 (256)
                      .+|+++..++.++++...+=.||+ |+     --.++.|+  ++++.++ +|........++  ..+.+...+..++...
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkv-k~-----WsWEs~Wlv~gi~swli-~P~~~a~l~ip~--~~~i~~~~~~~~l~~~   76 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKV-KG-----WSWESYWLVQGIFSWLI-VPWLWALLAIPD--FFSIYSATPASTLFWT   76 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhc-CC-----ccHHHHHHHHHHHHHHH-HHHHHHHHhCCc--HHHHHHhCChhHHHHH
Confidence            469999999999999877777665 33     23455553  2333221 233221111111  1223333332222221


Q ss_pred             ----HHHhhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhC-------CcchHHHHHHHHHHHHHHHhhcCC
Q 025215          136 ----CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFG-------HTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       136 ----~~~a~~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfg-------e~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                          +.-.+||+..+..+||.. +.-.+.+.....++..++--++.|       .+-....++|.+++++|+.+-.+.
T Consensus        77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence                344568898888899877 222233333333444444333322       333457899999999999888776

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=88.77  E-value=10  Score=34.30  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=61.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          132 MLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       132 ~~~i~~~a~~g~~v~~v~ky~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      +..-+.+.+...+-.-.+||.+--+...+-+..++-+++.+.++.+.+.+....+-+++|-.|+-++...+
T Consensus        87 ~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~  157 (327)
T KOG1581|consen   87 SLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFP  157 (327)
T ss_pred             hHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEec
Confidence            33346677777777788999999899999999999999999999999999999999999999998887653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=88.43  E-value=20  Score=32.98  Aligned_cols=71  Identities=13%  Similarity=0.071  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHhCCCC---C----HHHHHHHHHHHHHHhHhcc----CCCCCCCCCCCCChhhhHHHHHHHHHHHHHH
Q 025215            5 LKVFVIALLLKIIMKRRF---S----IIQWEALALLLIGISVNQL----RSLPEGTSALGLPVATGAYLYTLIFVTVPSL   73 (256)
Q Consensus         5 ~kil~talls~l~Lk~rl---s----~~qw~al~l~~~Gv~iv~~----~~~~~~~~~~~~~~~~~G~l~~l~a~~~sal   73 (256)
                      +.++.++++..++++|--   +    ..-..|++++++|+.+...    ++..++....+-....-|+...+++.+.+++
T Consensus       109 l~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~  188 (345)
T PRK13499        109 ITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSAC  188 (345)
T ss_pred             HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHH
Confidence            456778888888888532   3    3347788999999999887    4432211000111122489999999999988


Q ss_pred             HH
Q 025215           74 AS   75 (256)
Q Consensus        74 a~   75 (256)
                      .+
T Consensus       189 f~  190 (345)
T PRK13499        189 FS  190 (345)
T ss_pred             HH
Confidence            88

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=88.34  E-value=0.61  Score=34.39  Aligned_cols=29  Identities=17%  Similarity=0.433  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 025215            5 LKVFVIALLLKIIMKRRFSIIQWEALALL   33 (256)
Q Consensus         5 ~kil~talls~l~Lk~rls~~qw~al~l~   33 (256)
                      +-.+.+++.+.+++||+++..||.++.++
T Consensus        65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            45678999999999999999999998864

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.41  E-value=3  Score=31.20  Aligned_cols=49  Identities=14%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Q 025215          151 YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  199 (256)
Q Consensus       151 y~~~i~k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~  199 (256)
                      |..+-+|..-.-++..+-..+|+++++||+.+.++.|+.++..|++...
T Consensus        66 ~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF  114 (116)
T COG3169          66 YSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF  114 (116)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence            3344556666666666777899999999999999999999999997654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=87.09  E-value=0.68  Score=35.65  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHh
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN   40 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv   40 (256)
                      -+..++|++.++++.+|..+++.|+|+.+.++|+.+.
T Consensus        76 sl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   76 SLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            4567899999988888888988999999999998754

Many members are annotated as potential transmembrane proteins.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=87.09  E-value=1.6  Score=40.37  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=43.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 025215          157 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP  209 (256)
Q Consensus       157 k~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~~~~~~~~  209 (256)
                      .+..++.+-++|..++.++-+|++|+.++++.++.+.|+.+.+....++++..
T Consensus       188 ~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~  240 (416)
T KOG2765|consen  188 TTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL  240 (416)
T ss_pred             hhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence            33445566689999999999999999999999999999999988766665544

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=84.02  E-value=11  Score=33.42  Aligned_cols=62  Identities=18%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCcchHHH----HHHHHHHHHHHHhhcCCC
Q 025215          141 QGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNF----ILGISIVFISMHQFFSPL  202 (256)
Q Consensus       141 ~g~~v~~v~ky~~-~i~k~~a~~~s~v~t~lls~~lfge~lt~~~----~iG~~lVi~gv~ly~~~~  202 (256)
                      |++.-...+|+.. +.+.+..+....+.+.+.++++|||--+..+    +++.+++++|+++-+..+
T Consensus        58 Gq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~  124 (269)
T PF06800_consen   58 GQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD  124 (269)
T ss_pred             HHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            4333333333333 4455666778889999999999999665443    446677889998877653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=81.85  E-value=2.6  Score=36.75  Aligned_cols=39  Identities=15%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             chHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhcc
Q 025215            4 NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL   42 (256)
Q Consensus         4 q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~   42 (256)
                      -++=.||.+.|+++++..++.+||++-++.+.|...=..
T Consensus       275 TTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  275 TTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             ehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            356689999999999999999999999999998765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.07
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.74
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.99
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.62

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.07  E-value=4.1e-06  Score=65.73  Aligned_cols=67  Identities=19%  Similarity=0.170  Sum_probs=42.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215          136 CNNAAQGILSSFFFKYADTILK-KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  202 (256)
Q Consensus       136 ~~~a~~g~~v~~v~ky~~~i~k-~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~  202 (256)
                      +..++...+....+|+.+.-.. .+-+.+.++++.++++++|||++++.+++|.++++.|+++.+..+
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3444445555566666554433 333678999999999999999999999999999999999987653

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.74  E-value=0.00023  Score=53.41  Aligned_cols=63  Identities=21%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             hhhhHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215          139 AAQGILSSFFFKYADTILK-KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  201 (256)
Q Consensus       139 a~~g~~v~~v~ky~~~i~k-~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~  201 (256)
                      .+...+....+|+.+.-.. +.-+.+.++++.+++.++|||+++..+++|.++++.|+++.+..
T Consensus        41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3344445556666553333 33357899999999999999999999999999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.99  E-value=0.0013  Score=49.27  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215            3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS   44 (256)
Q Consensus         3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~   44 (256)
                      ..+.++.+++++++++||++++.||.++.++++|+..+...+
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            356789999999999999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.62  E-value=0.0014  Score=51.08  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215            3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS   44 (256)
Q Consensus         3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~   44 (256)
                      ..+.++++++++++++||++++.||+|++++++|+.++...+
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            356789999999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00