Citrus Sinensis ID: 025253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MAASANPVGNNNNQEGSSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANSFLPRPSHQMNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHcccccccccccHHcccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccHHHHHHccccccccccc
Coil and Loop (DISEMBL)
maasanpvgnnnnqegssaaqkstangvsvnssnnggnspavidtsqtasalrhnsgistewtpeEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTkkengkrrkedhnsarknkdrkekatdssakssshlaarpngpsyappmipmdtddgisyraiggitGDILEQNAQMFNQISAnfgtfqirDNIDLLCKARENILSIMNdlndmpeimkqmpplpvkvnddlansflprpshqmns
Flexible Loop (DISEMBL)
maasanpvgnnnnqegssaAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNsgistewtpEEQSILEDLLAKYASDSAVNRYAKiakqlkdktvrdvalrcrwmtkkengkrrkedhnsarknkdrkekatdssakssshlaarpngpsyappMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANSflprpshqmns
Low Complexity Region (SEG)
MAASANPVGNNNNQEGSSAAQKSTAngvsvnssnnggnsPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANSFLPRPSHQMNS
Disordered region (IsUnstruct)
********************************************************************ILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM********************************************************DGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLN**********************************
Disordered Region (DISOPRED)
********************************************************GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC*********************************************************************ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANS***********
Disordered Region (DISEMBL)
********************************SNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK*************************************PNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANSFLPRPSHQMNS
Disordered Region (DISPRO)
***************************************************LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN*************************************GPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANSFLP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASANPVGNNNNQEGSSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLANSFLPRPSHQMNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
15229471	258	uncharacterized protein [Arabidopsis tha	0.988	0.976	0.712	1e-105
297829308	251	hypothetical protein ARALYDRAFT_478080 [	0.956	0.972	0.713	1e-104
79313157	259	uncharacterized protein [Arabidopsis tha	0.988	0.972	0.709	1e-103
334185162	268	uncharacterized protein [Arabidopsis tha	0.988	0.940	0.686	1e-101
6466939	197	unknown protein, 5' partial [Arabidopsis	0.772	1.0	0.772	2e-90
224131978	198	predicted protein [Populus trichocarpa]	0.776	1.0	0.745	2e-85
225434010	254	PREDICTED: uncharacterized protein LOC10	0.941	0.944	0.624	3e-83
255567192	221	conserved hypothetical protein [Ricinus	0.8	0.923	0.716	4e-81
449468874	245	PREDICTED: uncharacterized protein LOC10	0.952	0.991	0.611	5e-81
296081339	206	unnamed protein product [Vitis vinifera]	0.780	0.966	0.705	1e-80

>gi|15229471|ref|NP_187413.1| uncharacterized protein [Arabidopsis thaliana] gi|27754217|gb|AAO22562.1| unknown protein [Arabidopsis thaliana] gi|332641041|gb|AEE74562.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/261 (71%), Positives = 222/261 (85%), Gaps = 9/261 (3%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGG 174
           KRRKEDH S+RK+KD+KEKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIGG
Sbjct: 119 KRRKEDH-SSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGG 177

Query: 175 ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLP 234
           ++GD+LEQNAQMFNQ+S NF  FQ+ +N+++LCKAR+NIL+I+NDLNDMPE+MKQMPPLP
Sbjct: 178 VSGDLLEQNAQMFNQLSTNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLP 237

Query: 235 VKVNDDLANSFLPRPSHQMNS 255
           VK+N++LANS LPRPSHQ  S
Sbjct: 238 VKLNEELANSILPRPSHQRKS 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829308|ref|XP_002882536.1| hypothetical protein ARALYDRAFT_478080 [Arabidopsis lyrata subsp. lyrata] gi|297328376|gb|EFH58795.1| hypothetical protein ARALYDRAFT_478080 [Arabidopsis lyrata subsp. lyrata]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/262 (71%), Positives = 220/262 (83%), Gaps = 18/262 (6%)

Query: 1   MAASANPVGNNNNQEGSSAAQK------STANGVSVNSSNNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK      +  NG +VNS +NGGN+           ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAATNGAAVNSVDNGGNA--------GVGALRH 50

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 51  NPGISTDWTHEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 110

Query: 115 KRRKEDHNSARKNKDRK-EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIG 173
           KRRKEDH S+RK+KD+K EKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIG
Sbjct: 111 KRRKEDH-SSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIG 169

Query: 174 GITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPL 233
           G++GD+LEQNAQMFNQ+S+NF  FQ+ +N+++LCKAR+NIL+I+NDLNDMPE+MKQMPPL
Sbjct: 170 GVSGDLLEQNAQMFNQVSSNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPL 229

Query: 234 PVKVNDDLANSFLPRPSHQMNS 255
           PVKVN++LANS LPRPSHQ  S
Sbjct: 230 PVKVNEELANSILPRPSHQRKS 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313157|ref|NP_001030658.1| uncharacterized protein [Arabidopsis thaliana] gi|332641043|gb|AEE74564.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/262 (70%), Positives = 222/262 (84%), Gaps = 10/262 (3%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRK-EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIG 173
           KRRKEDH S+RK+KD+K EKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIG
Sbjct: 119 KRRKEDH-SSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIG 177

Query: 174 GITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPL 233
           G++GD+LEQNAQMFNQ+S NF  FQ+ +N+++LCKAR+NIL+I+NDLNDMPE+MKQMPPL
Sbjct: 178 GVSGDLLEQNAQMFNQLSTNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPL 237

Query: 234 PVKVNDDLANSFLPRPSHQMNS 255
           PVK+N++LANS LPRPSHQ  S
Sbjct: 238 PVKLNEELANSILPRPSHQRKS 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185162|ref|NP_001189835.1| uncharacterized protein [Arabidopsis thaliana] gi|332641044|gb|AEE74565.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/271 (68%), Positives = 222/271 (81%), Gaps = 19/271 (7%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRK-EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIG 173
           KRRKEDH S+RK+KD+K EKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIG
Sbjct: 119 KRRKEDH-SSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIG 177

Query: 174 GITGDILEQNAQMFNQISANFGTFQI---------RDNIDLLCKARENILSIMNDLNDMP 224
           G++GD+LEQNAQMFNQ+S NF  FQ+          +N+++LCKAR+NIL+I+NDLNDMP
Sbjct: 178 GVSGDLLEQNAQMFNQLSTNFSAFQVNSTSTFHLLHENVNILCKARDNILAILNDLNDMP 237

Query: 225 EIMKQMPPLPVKVNDDLANSFLPRPSHQMNS 255
           E+MKQMPPLPVK+N++LANS LPRPSHQ  S
Sbjct: 238 EVMKQMPPLPVKLNEELANSILPRPSHQRKS 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6466939|gb|AAF13074.1|AC009176_1 unknown protein, 5' partial [Arabidopsis thaliana]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 153/198 (77%), Positives = 182/198 (91%), Gaps = 1/198 (0%)

Query: 58  ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRR 117
           IST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENGKRR
Sbjct: 1   ISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRR 60

Query: 118 KEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITG 177
           KEDH S+RK+KD+KEKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIGG++G
Sbjct: 61  KEDH-SSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGGVSG 119

Query: 178 DILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKV 237
           D+LEQNAQMFNQ+S NF  FQ+ +N+++LCKAR+NIL+I+NDLNDMPE+MKQMPPLPVK+
Sbjct: 120 DLLEQNAQMFNQLSTNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLPVKL 179

Query: 238 NDDLANSFLPRPSHQMNS 255
           N++LANS LPRPSHQ  S
Sbjct: 180 NEELANSILPRPSHQRKS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131978|ref|XP_002321225.1| predicted protein [Populus trichocarpa] gi|222861998|gb|EEE99540.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/200 (74%), Positives = 180/200 (90%), Gaps = 2/200 (1%)

Query: 48  TASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107
           T S+LRH+ GIS EW+P+EQSIL+DLL+KYAS+S + RYAKIA +LKDKTVRDVALRCRW
Sbjct: 1   TLSSLRHDPGISVEWSPDEQSILDDLLSKYASESNLVRYAKIAMKLKDKTVRDVALRCRW 60

Query: 108 MTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGI 167
           MTKKENGKRRKEDH SARKNKDRKEKATDSS KSSSHL  RPNGPSYAP +IP+D DDG+
Sbjct: 61  MTKKENGKRRKEDH-SARKNKDRKEKATDSSTKSSSHLTTRPNGPSYAP-VIPIDIDDGV 118

Query: 168 SYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIM 227
           SY+ IGG TG++LE+NAQ+ +QIS+NF + Q+ DNI+LLCK+RENIL+++NDLNDMPE M
Sbjct: 119 SYKDIGGATGELLEKNAQILSQISSNFSSIQVHDNINLLCKSRENILALLNDLNDMPETM 178

Query: 228 KQMPPLPVKVNDDLANSFLP 247
           KQMPPLPVK+N++LA++ LP
Sbjct: 179 KQMPPLPVKLNEELASNILP 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434010|ref|XP_002272798.1| PREDICTED: uncharacterized protein LOC100257710 [Vitis vinifera]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 193/253 (76%), Gaps = 13/253 (5%)

Query: 5   ANPVGNNNNQEGSSAAQKSTANG------VSVNSSNNGGNSPAVIDTSQTASALRHNSGI 58
           ANP G +  QE   A+      G      V+  S N+G  + AV     TA+A++HN GI
Sbjct: 2   ANPSGTH--QEPGHASSSFNGGGNPSNGSVAPASENSGPPAGAVA----TATAMKHNPGI 55

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRK 118
           + +WTPEEQS+LE+ L  Y+SDS + RYAKIA QL++KTVRDVALRCRWM+KKEN KRRK
Sbjct: 56  AMDWTPEEQSVLEEGLNAYSSDSNIIRYAKIAMQLQNKTVRDVALRCRWMSKKENSKRRK 115

Query: 119 EDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGD 178
           EDHN +RK+KD+KEK T+ SAKSS HLA+R N P YA PMIPMD DDGISY+AIGG TG 
Sbjct: 116 EDHNLSRKSKDKKEKVTEPSAKSS-HLASRTNVPPYAMPMIPMDNDDGISYKAIGGSTGQ 174

Query: 179 ILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVN 238
           +LEQNAQ FNQISAN  + QI+DNI L C+AR+NI +I+NDLNDMPE+M+QMPPLPVK+N
Sbjct: 175 LLEQNAQAFNQISANLASLQIQDNISLFCQARDNIQAILNDLNDMPEVMRQMPPLPVKIN 234

Query: 239 DDLANSFLPRPSH 251
           +DL NS LPR +H
Sbjct: 235 EDLVNSILPRAAH 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567192|ref|XP_002524577.1| conserved hypothetical protein [Ricinus communis] gi|223536130|gb|EEF37785.1| conserved hypothetical protein [Ricinus communis]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 149/208 (71%), Positives = 177/208 (85%), Gaps = 4/208 (1%)

Query: 14  QEGSSAAQK--STANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILE 71
           +EG ++AQK  S+ANG  VN+  NGG++    + SQT +ALRH+ GIS EWTP+EQS+LE
Sbjct: 15  EEGGASAQKVASSANGGGVNAVKNGGSNSGA-ENSQTEAALRHSPGISVEWTPDEQSLLE 73

Query: 72  DLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRK 131
           +LL+KYAS+S V RYAKIA QLKDKTVRDVALRCRWMTKKENGKRRKEDH SARKNKDRK
Sbjct: 74  ELLSKYASESIVQRYAKIALQLKDKTVRDVALRCRWMTKKENGKRRKEDH-SARKNKDRK 132

Query: 132 EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQIS 191
           EKA D S KSSSHL  RPNGPSYAPPMIP+D+DDGISY+AIGG TG++LEQNAQ+ +QIS
Sbjct: 133 EKAADPSVKSSSHLTPRPNGPSYAPPMIPVDSDDGISYKAIGGATGELLEQNAQILSQIS 192

Query: 192 ANFGTFQIRDNIDLLCKARENILSIMND 219
           ANF +FQI DN++LL K R+NI SI+N+
Sbjct: 193 ANFASFQIHDNLNLLSKTRDNIFSILNE 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468874|ref|XP_004152146.1| PREDICTED: uncharacterized protein LOC101222201 [Cucumis sativus] gi|449524858|ref|XP_004169438.1| PREDICTED: uncharacterized LOC101222201 [Cucumis sativus]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/252 (61%), Positives = 192/252 (76%), Gaps = 9/252 (3%)

Query: 5   ANPVGNNNNQEGSSAAQKSTANGVSVNSSNNGGNSPA-VIDTSQTASALRHNSGISTEWT 63
           ANP GN+  QE   A Q S++      + +NG ++P    D S +A A++HN GIST+WT
Sbjct: 2   ANPSGNH--QE---AGQPSSS--FDGGNPSNGNSTPVPAADNSSSALAMKHNPGISTDWT 54

Query: 64  PEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNS 123
            +EQ  LE+ L KYA++S+V RYAKIA QL +KTVRDVALRCRWM KKEN KRRKE+HN 
Sbjct: 55  SDEQVTLEEGLKKYAAESSVIRYAKIAMQLPNKTVRDVALRCRWMNKKENSKRRKEEHNL 114

Query: 124 ARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQN 183
            RKNKD+KE+ +DSS KS+  +AARPN P Y  PMIPMD DDG+SY+AIGG TG++LEQN
Sbjct: 115 TRKNKDKKERVSDSSMKSA-QVAARPNVPPYGMPMIPMDNDDGVSYKAIGGTTGELLEQN 173

Query: 184 AQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDLAN 243
           A   NQIS+N  +FQI+DNI L C+ R+NIL IMNDLN+MPE+MKQMPPLPVKVN++LAN
Sbjct: 174 AHAMNQISSNLASFQIQDNISLFCQTRDNILKIMNDLNEMPEVMKQMPPLPVKVNEELAN 233

Query: 244 SFLPRPSHQMNS 255
           + LP  SH + S
Sbjct: 234 TILPPTSHSLQS 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081339|emb|CBI17685.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/200 (70%), Positives = 170/200 (85%), Gaps = 1/200 (0%)

Query: 52  LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111
           ++HN GI+ +WTPEEQS+LE+ L  Y+SDS + RYAKIA QL++KTVRDVALRCRWM+KK
Sbjct: 1   MKHNPGIAMDWTPEEQSVLEEGLNAYSSDSNIIRYAKIAMQLQNKTVRDVALRCRWMSKK 60

Query: 112 ENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRA 171
           EN KRRKEDHN +RK+KD+KEK T+ SAKSS HLA+R N P YA PMIPMD DDGISY+A
Sbjct: 61  ENSKRRKEDHNLSRKSKDKKEKVTEPSAKSS-HLASRTNVPPYAMPMIPMDNDDGISYKA 119

Query: 172 IGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQMP 231
           IGG TG +LEQNAQ FNQISAN  + QI+DNI L C+AR+NI +I+NDLNDMPE+M+QMP
Sbjct: 120 IGGSTGQLLEQNAQAFNQISANLASLQIQDNISLFCQARDNIQAILNDLNDMPEVMRQMP 179

Query: 232 PLPVKVNDDLANSFLPRPSH 251
           PLPVK+N+DL NS LPR +H
Sbjct: 180 PLPVKINEDLVNSILPRAAH 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2196480	258	AT1G10820 "AT1G10820" [Arabido	0.784	0.775	0.396	1.3e-34
TAIR|locus:2199302	273	AT1G68160 [Arabidopsis thalian	0.760	0.710	0.375	1.2e-33
TAIR|locus:2036556	254	AT1G60670 [Arabidopsis thalian	0.772	0.775	0.372	5.2e-33
TAIR|locus:2058188	210	AT2G43470 "AT2G43470" [Arabido	0.705	0.857	0.323	7.7e-16
DICTYBASE|DDB_G0286135	412	DDB_G0286135 "ZZ-type zinc fin	0.333	0.206	0.301	0.00069

TAIR|locus:2196480 AT1G10820 "AT1G10820" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 82/207 (39%), Positives = 124/207 (59%)

Query:    40 PAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVR 99
             PAV  +   A+ ++  + +  +W+ EEQ +LE+ LAK   +  +++Y KIA  L DKTVR
Sbjct:    36 PAVDASGSVAAGVKQEAALVMDWSVEEQYVLENGLAKLKDEPKISKYVKIAATLPDKTVR 95

Query:   100 DVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMI 159
             DVALRCRWMT+K   +R++ED+N+A+    RK   T       S++  + N   Y   + 
Sbjct:    96 DVALRCRWMTRK---RRKREDNNAAKNISTRKVVDTSPELNMLSNVPQQ-NA-LYV--LN 148

Query:   160 PMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMND 219
              M       +  +     D+L+QNAQ F+QIS N    +++DNI L  +AR NI +I+ D
Sbjct:   149 NMCHSTRTPFEGLSDAVMDLLQQNAQAFSQISYNLSACKLQDNISLFHQARNNISAILTD 208

Query:   220 LNDMPEIMKQMPPLPVKVNDDLANSFL 246
             + +MP IM +MP LPV +NDDLA++ L
Sbjct:   209 MKEMPGIMSRMPALPVSINDDLASNLL 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199302 AT1G68160 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 74/197 (37%), Positives = 119/197 (60%)

Query:    46 SQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105
             S + S L+ ++ + +EW+ EEQ IL+  L KY    +++ Y +I   L DK++RD+ALRC
Sbjct:    64 SDSGSGLKLDTSMVSEWSNEEQYILDAGLEKYKDMPSIDMYIQIGNTLPDKSIRDIALRC 123

Query:   106 RWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDD 165
             RW+ +K   +R+ E+ N  R+    K K  +SS+KSS       N  SY        T  
Sbjct:   124 RWLRRK---RRKSEELNCGRRASSSKGKQVESSSKSSIPSVLPHNMASYPFSGPSTSTSK 180

Query:   166 GISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPE 225
              I+   +     +++EQN + F+QI AN  +++  DN+DL  +AR N+++I N++N+MP 
Sbjct:   181 QITSEDLSSYATNLIEQNVRAFSQIRANLSSYKAGDNLDLFRQARNNLITIQNEINNMPG 240

Query:   226 IMKQMPPLPVKVNDDLA 242
             +M +MPPLPV +NDDL+
Sbjct:   241 LMNKMPPLPVTINDDLS 257

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036556 AT1G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 76/204 (37%), Positives = 121/204 (59%)

Query:    43 IDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102
             +++  + + L+H + ++ +W+ EEQ ILE  L+K+  +  V +Y KIA  L DK+VRDVA
Sbjct:    35 VNSPTSVTGLKHEASLAVDWSVEEQYILEKGLSKFKDEPQVTKYVKIAATLPDKSVRDVA 94

Query:   103 LRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMD 162
             +RC+WMT+K   +R+ E+H++  K   RK    D   K +          +YA  M  M 
Sbjct:    95 MRCKWMTQK---RRKGEEHSTGTKVSYRK--VVDLPPKLNMFSTEPQQNATYA--MNHMC 147

Query:   163 TDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLND 222
                 + +  +     + L QNAQ F+QIS+N    + +DN+ L   AR NI +I+ND+ +
Sbjct:   148 QSARMPFEGLSDAVMERLRQNAQAFSQISSNLSVCKPQDNVSLFYMARNNISAILNDMKE 207

Query:   223 MPEIMKQMPPLPVKVNDDLANSFL 246
             MP I+ +MPPLPV +N+DLA+S +
Sbjct:   208 MPGIISRMPPLPVSINNDLASSLV 231

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2058188 AT2G43470 "AT2G43470" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 66/204 (32%), Positives = 97/204 (47%)

Query:    43 IDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDS--AVNRYAKIAKQLKDKTVRD 100
             + T   +S L   SGI+  WT  E  IL  LL  Y+SDS  AV RY +I + L+DKT+RD
Sbjct:    11 LTTPSESSLLISRSGIALNWTTAEDDILIQLLDSYSSDSRSAVTRYLQILEFLQDKTIRD 70

Query:   101 VALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIP 160
             VA R RW+  K+  K++KEDHN     +   E+  +        LA++     Y P  + 
Sbjct:    71 VAARSRWIYNKKIAKKKKEDHNGLGTTRVDNEEIVNMV------LASQV----YQPSQVF 120

Query:   161 MDTDDGISYRAIGGITGDILEQNAQM-FNQISANFGTFQ-IRDNIDLLCK-ARENILSIM 217
               +  G+    +        +  A + F  ++ N   F+ IR+NI  L K   EN+    
Sbjct:   121 QPSQHGVHNELLNHNKQWFNQIYANLTFLNLTDNLDLFRKIRENIKSLLKDLNENVSETW 180

Query:   218 NDLNDMPEIMKQMPPLPVKVNDDL 241
              +   MP        LP K+ND+L
Sbjct:   181 KN---MPS------SLPEKLNDEL 195

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0286135 DDB_G0286135 "ZZ-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
 Identities = 28/93 (30%), Positives = 52/93 (55%)

Query:    60 TEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCRWMTKK-EN---- 113
             T WT EEQ +LE LL KY  +  A +R+ KIA  +K +T + VA R +   KK E     
Sbjct:   197 TYWTEEEQKLLEQLLVKYPEEEVASHRWTKIATHIKGRTPQQVASRTQKFFKKLEKAGLR 256

Query:   114 --GKRRKEDHNSARKNKDRKEKATDSSAKSSSH 144
               G R+K+     ++ + ++++  +++  ++++
Sbjct:   257 IPGSRKKKQSQQQQQQQQQQQQQNNNNNNNNNN 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.125   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      255       241   0.00094  113 3  11 23  0.37    34
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  26.13u 0.10s 26.23t   Elapsed:  00:00:01
  Total cpu time:  26.13u 0.10s 26.23t   Elapsed:  00:00:02
  Start:  Fri May 10 00:09:02 2013   End:  Fri May 10 00:09:04 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam12579	35	pfam12579, DUF3755, Protein of unknown function (D	1e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	7e-07
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-07
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-04

>gnl|CDD|221648 pfam12579, DUF3755, Protein of unknown function (DUF3755)

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 20/34 (58%), Positives = 29/34 (85%)

Query: 196 TFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQ 229
           TFQ+++NIDL C+ R+NIL+I+ND+ +MP IM Q
Sbjct: 2   TFQLQENIDLFCRTRDNILAILNDMREMPGIMSQ 35

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important. Length = 35

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 44.5 bits (106), Expect = 7e-07
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106
            WT EE  +L + + KY      N + KIAK+L  +T +    R R
Sbjct: 1   PWTEEEDELLLEAVKKY----GKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106
            EWT EE  +L +L+ KY      N + KIAK+L  +T      R R
Sbjct: 2   GEWTEEEDELLIELVKKY----GKNNWEKIAKELPGRTAEQCRERWR 44

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
            WTPEE  +L + + K+ +      ++KIAK L  +T        RW  
Sbjct: 3   PWTPEEDELLIEAVKKHGN----GNWSKIAKHLPGRTDNQCKN--RWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF12579	35	DUF3755: Protein of unknown function (DUF3755); In	99.69
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.51
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.34
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.22
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.8
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	96.2
PLN03212	249	Transcription repressor MYB5; Provisional	96.16
PLN03091	459	hypothetical protein; Provisional	95.86
PLN03212	249	Transcription repressor MYB5; Provisional	95.24
PLN03091	459	hypothetical protein; Provisional	95.09
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	94.62
KOG0048	238	consensus Transcription factor, Myb superfamily [T	93.39
KOG4167	907	consensus Predicted DNA-binding protein, contains	93.24
KOG0048	238	consensus Transcription factor, Myb superfamily [T	92.48
KOG1279	506	consensus Chromatin remodeling factor subunit and	89.24
KOG0724	335	consensus Zuotin and related molecular chaperones	87.0
PF05030	65	SSXT: SSXT protein (N-terminal region); InterPro:	80.58
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	80.52

>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length

Probab=99.69  E-value=1.3e-17  Score=110.97  Aligned_cols=35  Identities=63%  Similarity=1.149  Sum_probs=33.9

Q ss_pred             hhcccccchHHHHHHHHHHHHHHHHhccchhhhhc
Q 025253          195 GTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQ  229 (255)
Q Consensus       195 ~t~q~qeNidLf~~~RdNI~~ILn~m~~mpgiM~q  229 (255)
                      ++||++||||||||+||||.+||++|++|||||+|
T Consensus         1 st~q~~eNidLf~~~R~NI~~il~~m~~mpgim~q   35 (35)
T PF12579_consen    1 STFQLQENIDLFCQTRDNILAILNDMNDMPGIMSQ   35 (35)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHcchhhhcC
Confidence            58999999999999999999999999999999997

There is a single completely conserved residue N that may be functionally important.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.51  E-value=2.9e-07  Score=63.26  Aligned_cols=45  Identities=31%  Similarity=0.541  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhh
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWM  108 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm  108 (255)
                      ..||.||..+|.+++.+|+..    +|.+||..+| +||..+|-.|++-+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~----~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD----NWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT----HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc----HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            479999999999999999987    8999999999 99999999998754

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.34  E-value=1.4e-06  Score=57.01  Aligned_cols=46  Identities=37%  Similarity=0.596  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~  109 (255)
                      ..||.+|..+|..++..|..    .+|.+||..+|+||..||..|++-+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~----~~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK----NNWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            47999999999999999986    47999999999999999999987654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.22  E-value=3.6e-06  Score=54.46  Aligned_cols=43  Identities=37%  Similarity=0.598  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHh
Q 025253           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW  107 (255)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rw  107 (255)
                      .||.||...|..++.+|+.    .+|.+||..+|+||..||..|+.-
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~----~~w~~Ia~~~~~rs~~~~~~~~~~   43 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK----NNWEKIAKELPGRTPKQCRERWRN   43 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc----CCHHHHHhHcCCCCHHHHHHHHHH
Confidence            5999999999999999985    579999999999999999888754

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.80  E-value=6.3e-05  Score=53.27  Aligned_cols=41  Identities=37%  Similarity=0.631  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHh
Q 025253           62 WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW  107 (255)
Q Consensus        62 WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rw  107 (255)
                      ||.||..+|.++...|..     .|.+||..||+||..+|-.|++.
T Consensus         1 WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-----DWKKIAEHLGNRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS------HHHHHHHSTTS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-----CHHHHHHHHCcCCHHHHHHHHHH
Confidence            999999999999999964     69999999988999999999999

...

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=96.20  E-value=0.017  Score=42.05  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHH---HHHHHHcC-CC-CHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRY---AKIAKQLK-DK-TVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry---~KIA~~Lp-~K-TvrDVAlR~rwm~~k  111 (255)
                      ...||.||...|.+|+..|....    |   .+|+..+. .+ |..+|+.+.+.+.-|
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~----~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPD----WATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc----ccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            46799999999999999998632    5   77877653 55 999999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.16  E-value=0.025  Score=52.43  Aligned_cols=43  Identities=23%  Similarity=0.368  Sum_probs=35.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~  109 (255)
                      ..||.||..+|.+.-..|.     .||.+||..||++|-  ++.|=||..
T Consensus        79 gpWT~EED~lLlel~~~~G-----nKWs~IAk~LpGRTD--nqIKNRWns  121 (249)
T PLN03212         79 GGITSDEEDLILRLHRLLG-----NRWSLIAGRIPGRTD--NEIKNYWNT  121 (249)
T ss_pred             CCCChHHHHHHHHHHHhcc-----ccHHHHHhhcCCCCH--HHHHHHHHH
Confidence            5799999999988877765     489999999999995  555666654

>PLN03091 hypothetical protein; Provisional

Probab=95.86  E-value=0.011  Score=58.59  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||..+|-+.-.+|.     .||.+||..||++|--+|--|+..+.+|
T Consensus        68 gpWT~EED~lLLeL~k~~G-----nKWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         68 GTFSQQEENLIIELHAVLG-----NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             CCCCHHHHHHHHHHHHHhC-----cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            5799999999999999886     3999999999999977776666555555

>PLN03212 Transcription repressor MYB5; Provisional

Probab=95.24  E-value=0.03  Score=51.85  Aligned_cols=49  Identities=22%  Similarity=0.323  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-CCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-KDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L-p~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||..+|-++..+|..    .+|.+||..+ +++|.++|-.|+.-+..-
T Consensus        25 Rg~WT~EEDe~L~~lV~kyG~----~nW~~IAk~~g~gRT~KQCReRW~N~L~P   74 (249)
T PLN03212         25 RGPWTVEEDEILVSFIKKEGE----GRWRSLPKRAGLLRCGKSCRLRWMNYLRP   74 (249)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc----ccHHHHHHhhhcCCCcchHHHHHHHhhch
Confidence            357999999999999999964    4799999988 699999997776544433

>PLN03091 hypothetical protein; Provisional

Probab=95.09  E-value=0.029  Score=55.73  Aligned_cols=49  Identities=22%  Similarity=0.390  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm~~kE  112 (255)
                      ..||.||.++|.+++.+|..    ..|.+||..++ +||.++|-.|+.-+....
T Consensus        15 g~WTpEEDe~L~~~V~kyG~----~nWs~IAk~~g~gRT~KQCRERW~NyLdP~   64 (459)
T PLN03091         15 GLWSPEEDEKLLRHITKYGH----GCWSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (459)
T ss_pred             CCCCHHHHHHHHHHHHHhCc----CCHHHHhhhhccCcCcchHhHHHHhccCCc
Confidence            47999999999999999975    37999999875 999999977755444433

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=94.62  E-value=0.051  Score=54.46  Aligned_cols=55  Identities=24%  Similarity=0.391  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccccccccccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKED  120 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn~KRRKed  120 (255)
                      -.||.+|.-.|-+|...|.++     |.|||..+++||+.||++|.-.+---++. ++|-|
T Consensus       280 k~WS~qE~~LLLEGIe~ygDd-----W~kVA~HVgtKt~EqCIl~FL~LPieD~~-l~k~~  334 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDD-----WDKVARHVGTKTKEQCILHFLQLPIEDNY-LSKGD  334 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhh-----HHHHHHHhCCCCHHHHHHHHHcCCcchhh-hhccc
Confidence            379999999999999999754     99999999999999999999888765553 44444

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=93.39  E-value=0.12  Score=46.63  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhhcc-ccccccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWMTK-KENGKRR  117 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm~~-kEn~KRR  117 (255)
                      .-.||.||..+|-+...+|...    +|.-||..++ +++=+.|  |.||+.. +-.-||.
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~----~W~~i~k~~gl~R~GKSC--RlRW~NyLrP~ikrg   63 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH----NGTALPKLAGLRRCGKSC--RLRWTNYLRPDLKRG   63 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC----CcchhhhhcCCCccchHH--HHHhhcccCCCccCC
Confidence            4689999999999999999877    7999999999 7777665  8889884 3333444

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=93.24  E-value=0.11  Score=54.70  Aligned_cols=41  Identities=32%  Similarity=0.525  Sum_probs=36.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHH
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL  103 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAl  103 (255)
                      -+..||..|.+.|.++|..|.+|     |++|+.||++|||.+|.-
T Consensus       618 gSd~WTp~E~~lF~kA~y~~~KD-----F~~v~km~~~KtVaqCVe  658 (907)
T KOG4167|consen  618 GSDKWTPLERKLFNKALYTYSKD-----FIFVQKMVKSKTVAQCVE  658 (907)
T ss_pred             CcccccHHHHHHHHHHHHHhccc-----HHHHHHHhccccHHHHHH
Confidence            35679999999999999888765     789999999999999754

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=92.48  E-value=0.18  Score=45.37  Aligned_cols=41  Identities=27%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHH
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC  105 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~  105 (255)
                      .-.||.||..++-++=++|.     .||.+||..||++|--+| ..+
T Consensus        62 rg~fT~eEe~~Ii~lH~~~G-----NrWs~IA~~LPGRTDNeI-KN~  102 (238)
T KOG0048|consen   62 RGNFSDEEEDLIIKLHALLG-----NRWSLIAGRLPGRTDNEV-KNH  102 (238)
T ss_pred             CCCCCHHHHHHHHHHHHHHC-----cHHHHHHhhCCCcCHHHH-HHH
Confidence            46799999999999988885     479999999999999998 444

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=89.24  E-value=0.78  Score=46.47  Aligned_cols=54  Identities=19%  Similarity=0.377  Sum_probs=47.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccccc
Q 025253           56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG  114 (255)
Q Consensus        56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn~  114 (255)
                      ....-.||..|--.|-+++.+|.++     |.|||..++.||..||.+++..+--++.-
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~dd-----W~kVa~hVg~ks~eqCI~kFL~LPieD~~  303 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGDD-----WNKVADHVGTKSQEQCILKFLRLPIEDPY  303 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhccc-----HHHHHhccCCCCHHHHHHHHHhcCccchh
Confidence            3455689999999999999999765     89999999999999999999998877654

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=87.00  E-value=0.7  Score=43.04  Aligned_cols=51  Identities=25%  Similarity=0.276  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHhhhcCC-c--hhhHHHHHHHHcCC-CCHHHHHHHHHhhcc
Q 025253           60 TEWTPEEQSILEDLLAKYASD-S--AVNRYAKIAKQLKD-KTVRDVALRCRWMTK  110 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e-~--~~~Ry~KIA~~Lp~-KTvrDVAlR~rwm~~  110 (255)
                      ..|+.++.+.++.+|..|..+ +  ..++|.+++++||. +++.|+.-++.-...
T Consensus        32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   86 (335)
T KOG0724|consen   32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVF   86 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHH
Confidence            459999999999999999975 3  78999999999999 999999888776653

>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []

Probab=80.58  E-value=3.3  Score=31.37  Aligned_cols=42  Identities=12%  Similarity=0.175  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHH
Q 025253          175 ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSI  216 (255)
Q Consensus       175 ~~~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~I  216 (255)
                      .++.+|++|.+|+--|-.+....+.+|=+..+...-+|+.-+
T Consensus        10 ~IQk~LdEN~~LI~~I~e~qn~Gr~~Ec~qyq~~LhrNL~yL   51 (65)
T PF05030_consen   10 QIQKMLDENDQLIQCIQEYQNKGRAQECVQYQQILHRNLVYL   51 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999998643

The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=80.52  E-value=3.7  Score=41.03  Aligned_cols=48  Identities=19%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~  109 (255)
                      ...+||.+|--.|-+|+..|.=.    =|.-||..++.||.+||---+..+.
T Consensus        71 ~~~~WtadEEilLLea~~t~G~G----NW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFG----NWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCC----cHHHHHHHHcccchHHHHHHHHHHH
Confidence            45689999999999999999755    4999999999999999999887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-09
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	2e-07
2cjj_A	93	Radialis; plant development, DNA-binding protein,	2e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	5e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	2e-04
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	2e-04
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	7e-04
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	8e-04

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 62  WTPEEQSILEDLLAKY-ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111
           WT EEQ  LE LL KY   +    R+ KIA +L ++T + VA + +    K
Sbjct: 11  WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 8e-11
 Identities = 44/214 (20%), Positives = 65/214 (30%), Gaps = 47/214 (21%)

Query: 52  LRHNSGISTE-----WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVR--DVALR 104
              ++ I T      W    +S +  ++ K    S V       KQ K+ T+    + L 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE------KQPKESTISIPSIYLE 434

Query: 105 CRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTD 164
            +   K EN       H S   +     K  DS                  PP       
Sbjct: 435 LK--VKLEN---EYALHRSIV-DHYNIPKTFDSDDLI--------------PP-----YL 469

Query: 165 DGISYRAIG-GITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDM 223
           D   Y  IG  +      +   +F  +  +F  F +   I     A     SI+N L  +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-F-LEQKIRHDSTAWNASGSILNTLQQL 527

Query: 224 ----PEIMKQMPPLPVKVNDDLANSFLPRPSHQM 253
               P I    P     VN  L   FLP+    +
Sbjct: 528 KFYKPYICDNDPKYERLVNAIL--DFLPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 34/204 (16%), Positives = 63/204 (30%), Gaps = 49/204 (24%)

Query: 62  WT----PEE--QSILEDLLAK-YASDSAVNRYAKIAKQLKDKTVRDVALRCR-WMTKKEN 113
           WT     EE  Q  +E++L   Y     ++      +Q    T   +  R R +   +  
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 114 GKR---RKEDHNSARKN--KDRKEKAT-----DSSAKSSSHLAA---RPNGPSYAPPMIP 160
            K    R + +   R+   + R  K         S K+   +A                 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMD--- 181

Query: 161 MDTDDGISYRAIG--GITGDILEQNAQMFNQISANF-----GTFQIRDNID--------L 205
                 I +  +        +LE   ++  QI  N+      +  I+  I         L
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 206 LC-KARENILSIMNDLNDMPEIMK 228
           L  K  EN L ++ ++ +  +   
Sbjct: 238 LKSKPYENCLLVLLNVQN-AKAWN 260

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 44  DTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL 103
             S  +            WT  +Q +LE  L +Y   S+ + + KIA+ +  K+  D   
Sbjct: 3   SGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSS-DCWDKIARCVPSKSKEDCIA 61

Query: 104 RCRWMTK 110
           R + +  
Sbjct: 62  RYKLLVS 68

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 44  DTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDV 101
           D     S +    G    W   E    E  L+    D+  +R+ K+A+ +K +T  +V
Sbjct: 5   DDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTP-DRWKKVAQYVKGRTPEEV 61

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM----TK 110
             G    W+ +E    E  LA Y  D+  +R+A +A+ ++ +T  +V      +      
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKDTP-DRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 111 KENGK 115
            E+GK
Sbjct: 63  IESGK 67

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 43  IDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102
           +      S+ R N      WT EE    +  L ++  +     ++ IA+ +  KTV    
Sbjct: 1   MHHHHHHSSGRENLY-FQGWTEEEMGTAKKGLLEHGRN-----WSAIARMVGSKTVSQCK 54

Query: 103 LRCRWMTKKENGKRRKEDHNSARKNKDRKEKATD 136
                  K++N     + H    + +    +   
Sbjct: 55  NFYFNYKKRQNLDEILQQHKLKMEKERNARRKKK 88

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 8/31 (25%)

Query: 65 EEQSI--LEDLLAKYASDS----AVNRYAKI 89
          E+Q++  L+  L  YA DS    A+   A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK--ATM 46

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 56  SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ-LKDKTVRDVALRCRWMTKKENG 114
           SGI   WT +E       L +Y  +     + +I K+ L +K   ++ +   +  KK +G
Sbjct: 6   SGIEKCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGEL-ITFYYYWKKTSG 59

Query: 115 K 115
            
Sbjct: 60  P 60

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN 113
            WT  E+ I +D   ++  +     +  IA  L+ K+V D  L      K EN
Sbjct: 14  VWTDHEKEIFKDKFIQHPKN-----FGLIASYLERKSVPDCVLYYYLTKKNEN 61

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT--KKENGKRR 117
           T WT EE ++L   + +Y       ++A IAK    +T  D+ ++ RW+T   K    + 
Sbjct: 63  TPWTAEEDALLVQKIQEYG-----RQWAIIAKFFPGRT--DIHIKNRWVTISNKLGIPQT 115

Query: 118 KEDHNSARKN 127
           ++       +
Sbjct: 116 QQMLEHHHHH 125

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRK 118
           + EWT E+ S L   + K+       R+ KIA +L  ++V DV  + + +  K++     
Sbjct: 8   APEWTEEDLSQLTRSMVKFPG-GTPGRWEKIAHELG-RSVTDVTTKAKQL--KDSVTCSP 63

Query: 119 EDHNSARK 126
              +    
Sbjct: 64  GMVSGPSS 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.33
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.26
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.16
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.14
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.13
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.97
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.68
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.58
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.56
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.5
2crg_A	70	Metastasis associated protein MTA3; transcription	98.39
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.38
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.19
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.16
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.15
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.07
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.0
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	97.96
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.19
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.9
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.85
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	97.83
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.78
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.76
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.75
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.74
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	97.71
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.68
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.57
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.57
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.56
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.52
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.29
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.2
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.19
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.17
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.01
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	96.74
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	96.69
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.59
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	96.27
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.13
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.01
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	95.68
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.07
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.05
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.35
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	86.99
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	83.54

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.33  E-value=2.3e-12  Score=97.10  Aligned_cols=51  Identities=12%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||+++||++|+.|+.+. .+||.+||+.+|+||+.||..||..+...
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~t-p~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHK-PGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSS-SSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCC-ccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            4699999999999999999986 68999999999999999999999998554

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.26  E-value=3e-13  Score=102.30  Aligned_cols=47  Identities=23%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHH
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~r  106 (255)
                      +..||.||+++||.+|++||.++ .+||.|||+.||+||+.||..+|+
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~t-pdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDT-PDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSC-CSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCC-CcHHHHHHHHcCCCCHHHHHHHHH
Confidence            55799999999999999999997 699999999999999999988775

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.16  E-value=5.5e-11  Score=88.83  Aligned_cols=51  Identities=29%  Similarity=0.562  Sum_probs=46.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||+++||.+|++||.++ ..||.+||+.| +||+.||..|++-|.+.
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t-~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGT-PGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTC-TTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCC-CcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45799999999999999999987 68999999998 79999999999988544

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.14  E-value=1.2e-10  Score=87.34  Aligned_cols=53  Identities=26%  Similarity=0.441  Sum_probs=47.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ....||.||+++|+++|.+|+.+. ..||.+||.+||+||+.+|-.||..+...
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~-~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGS-SDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSS-HHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            346799999999999999999875 68999999999999999999999987654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.13  E-value=6.8e-11  Score=92.39  Aligned_cols=52  Identities=23%  Similarity=0.496  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||+++|+++|++|+.+. ..||.+||+.||+||+.||..||+-+.++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~-~~rW~~IA~~vpGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDT-PDRWANVARAVEGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTC-TTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999885 58999999999999999999999988654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=9.6e-10  Score=81.06  Aligned_cols=53  Identities=38%  Similarity=0.547  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~-~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||+.+|++++.+|..+. ...+|.+||..||+||.+||..|++++..+
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999874 568999999999999999999999777765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=4.1e-08  Score=70.36  Aligned_cols=49  Identities=27%  Similarity=0.401  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ....||.||.++|+++|.+|+.     +|.+||..||+||+.||..+|--..+.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk-----~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~   59 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPK-----NFGLIASYLERKSVPDCVLYYYLTKKN   59 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTT-----CHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence            4468999999999999999973     699999999999999998776443333

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.58  E-value=9.3e-08  Score=72.24  Aligned_cols=51  Identities=20%  Similarity=0.428  Sum_probs=44.4

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253           54 HNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (255)
Q Consensus        54 ~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~  109 (255)
                      ........||.||..+|.+++.+|.     .+|.+||..||+||.++|..|+.-+.
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-----DDWNKVSEHVGSRTQDECILHFLRLP   63 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-----SCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-----CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            3334567899999999999999999     48999999999999999999887663

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.56  E-value=8.7e-08  Score=70.31  Aligned_cols=48  Identities=35%  Similarity=0.538  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      ..||.||..+|.+++.+|..     +|.+||..||+||..+|-.|++.+.++.
T Consensus        10 ~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A           10 VKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            47999999999999999986     8999999999999999999999887663

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=2.6e-07  Score=66.82  Aligned_cols=47  Identities=23%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~-~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||.++||++|.+|+.+     |.+||. +||+||+.||..-| .+-+|
T Consensus         9 ~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fY-Y~wKk   56 (63)
T 2yqk_A            9 EKCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGELITFY-YYWKK   56 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHTCSC-----HHHHHHHSCTTSCHHHHHHHH-HHHHC
T ss_pred             CCCcCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCcHHHHHHHH-hcccC
Confidence            3689999999999999999997     899998 69999999996443 44444

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.39  E-value=5.7e-07  Score=66.41  Aligned_cols=50  Identities=22%  Similarity=0.378  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCCCHHHHHHHHHhhcccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~-~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      ....||.||.++||++|.+|+.+     |.+||. +||+||+.||..=|=-..+.+
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fYY~wKkt~   57 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTD   57 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCCHHHHHHHHHhhcCCc
Confidence            34579999999999999999997     899999 699999999997765333333

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.38  E-value=6.2e-07  Score=63.70  Aligned_cols=49  Identities=16%  Similarity=0.238  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||..+|.+++.+|..    .+|.+||..||+||.++|..|+..+...
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            357999999999999999974    4799999999999999999998877654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.24  E-value=1.9e-06  Score=60.94  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhh
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWM  108 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm  108 (255)
                      ...||.||..+|.+++.+|..    .+|.+||..+| +||.++|..|+..+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~----~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGL----GNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTT----TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            457999999999999999963    57999999999 99999999988754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.19  E-value=2.2e-06  Score=58.72  Aligned_cols=47  Identities=26%  Similarity=0.394  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ..||.||..+|.++..+|..    .+|.+||..||++|..+|-.|++.+..
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            4 TRWTREEDEKLKKLVEQNGT----DDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS----SCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999975    379999999999999999998876543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.16  E-value=3.4e-06  Score=59.45  Aligned_cols=48  Identities=19%  Similarity=0.379  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||..+|.++..+|..    .+|.+||..||++|..+|-.|++.+...
T Consensus         9 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p   56 (60)
T 2d9a_A            9 VKWTHEEDEQLRALVRQFGQ----QDWKFLASHFPNRTDQQCQYRWLRVLSG   56 (60)
T ss_dssp             SCCCHHHHHHHHHHHHHTCT----TCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence            57999999999999999973    4799999999999999999998877654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=4.3e-06  Score=60.72  Aligned_cols=49  Identities=24%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      -.||.||..+|.++..+|..    .+|.+||..||++|.++|-.|++.+....
T Consensus        10 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~   58 (70)
T 2dim_A           10 GVWRNTEDEILKAAVMKYGK----NQWSRIASLLHRKSAKQCKARWYEWLDPS   58 (70)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS----SCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence            47999999999999999973    47999999999999999999988877654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.08  E-value=4.6e-06  Score=57.17  Aligned_cols=46  Identities=33%  Similarity=0.464  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~  109 (255)
                      ..||.||..+|.++..+|..    .+|.+||..||++|..+|-.|+..+.
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCc----ChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            47999999999999999974    46999999999999999988877554

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=2.5e-06  Score=61.27  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      ..||.||..+|.++...|..     +|.+||. +|+||.++|-.|++.+..+.
T Consensus        10 ~~WT~eED~~L~~~~~~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~   56 (66)
T 2din_A           10 TEWSREEEEKLLHLAKLMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLDKA   56 (66)
T ss_dssp             CCCCHHHHHHHHHHHHHCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence            57999999999999888874     8999999 88999999999999887664

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.00  E-value=9.5e-06  Score=72.71  Aligned_cols=50  Identities=24%  Similarity=0.380  Sum_probs=44.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      .....||.||.++|+++|.+|..+     |.+||..|++||+.+|-..+.+..++
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKD-----W~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            356689999999999999999875     99999999999999999888766654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=97.96  E-value=1.3e-05  Score=55.28  Aligned_cols=48  Identities=29%  Similarity=0.349  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||..+|.++..+|..    .+|.+||..+|  ++|..||-.|++-+.+.
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            47999999999999999963    47999999999  99999999988877653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.19  E-value=1.1e-06  Score=67.30  Aligned_cols=48  Identities=23%  Similarity=0.261  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      ..||.||..+|.+++..|..     +|.+||..||++|..+|-.|+..+.++.
T Consensus        17 ~~WT~eEd~~l~~~~~~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           17 QGWTEEEMGTAKKGLLEHGR-----NWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            47999999999999999964     6999999999999999999988776654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.90  E-value=1.2e-05  Score=61.82  Aligned_cols=48  Identities=27%  Similarity=0.412  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||..+|.+++.+|..     +|.+||..||++|..+|.-|++-+.++
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             ccCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            358999999999999999973     799999999999999999998876654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.85  E-value=1.6e-05  Score=61.88  Aligned_cols=47  Identities=28%  Similarity=0.608  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||..+|.+++.+|..     +|.+||..||++|..+|..|++.+.++
T Consensus        54 ~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           54 DPWSPEEDMLLDQKYAEYGP-----KWNKISKFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            58999999999999999974     799999999999999999998887765

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=97.83  E-value=4.5e-05  Score=55.19  Aligned_cols=51  Identities=27%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhcccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~~kE  112 (255)
                      ....||.||..+|.++..+|..    .+|.+||..||  ++|..+|-.|++-+.+..
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~   61 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   61 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence            4568999999999999999963    47999999999  999999999988887664

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.78  E-value=2.2e-05  Score=62.68  Aligned_cols=48  Identities=29%  Similarity=0.414  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||..+|.+++.+|..     +|.+||..||++|..+|.-|++-+.++
T Consensus        79 ~~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             cccCCHHHHHHHHHHHHHHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            357999999999999999974     799999999999999999998877654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.76  E-value=2.3e-05  Score=62.68  Aligned_cols=47  Identities=30%  Similarity=0.458  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||..+|.+++.+|..     +|.+||..||++|..+|--|++.+.+|
T Consensus        63 ~~WT~eEd~~L~~~v~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           63 TPWTAEEDALLVQKIQEYGR-----QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             SCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999973     699999999999999999988887765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.75  E-value=6.9e-05  Score=54.22  Aligned_cols=48  Identities=27%  Similarity=0.430  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhcc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTK  110 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~~  110 (255)
                      ...||.||..+|.++..+|...    .|.+||..+|  ++|..||--|++-|.+
T Consensus        11 k~~WT~eED~~L~~~V~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           11 KQKWTVEESEWVKAGVQKYGEG----NWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCCC----chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            3579999999999999999643    6999999977  9999998888876654

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.74  E-value=5e-05  Score=58.90  Aligned_cols=43  Identities=21%  Similarity=0.414  Sum_probs=38.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHH
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC  105 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~  105 (255)
                      ....||.||..+|+++|..|+++     |-+||..||+||+.||..=|
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK~-----F~~Ia~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYY   84 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTTC-----HHHHHHTCTTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCC-----HHHHHHHcCCCCHHHHHHHH
Confidence            45679999999999999999864     78999999999999998655

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.71  E-value=3.4e-05  Score=59.36  Aligned_cols=47  Identities=30%  Similarity=0.444  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ..||.||..+|.++..+|..    .+|.+||..||++|.++|..|++-+..
T Consensus         5 ~~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   51 (105)
T 1gv2_A            5 GPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLN   51 (105)
T ss_dssp             SCCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence            57999999999999999975    369999999999999999888776544

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=97.71  E-value=7.8e-05  Score=55.66  Aligned_cols=50  Identities=30%  Similarity=0.460  Sum_probs=42.0

Q ss_pred             cCCCC-CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           55 NSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        55 ~~~~~-~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ++.+. ..||.||..+|.++..+|..     +|.+||..| ++|..+|--|++.+.+
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-----kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-----DWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-----CHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-----CHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            44433 58999999999999999984     499999999 9999999988887654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.68  E-value=4.7e-05  Score=59.15  Aligned_cols=47  Identities=19%  Similarity=0.361  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ..||.||..+|.++..+|..    .+|.+||..||++|.++|-.|+.-+..
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA----KDWIRISQLMITRNPRQCRERWNNYIN   48 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS----SCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence            36999999999999999974    479999999999999999888765443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.58  E-value=7.5e-05  Score=59.96  Aligned_cols=49  Identities=27%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN  113 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn  113 (255)
                      ..||.||..+|.++..+|..     +|.+||..||++|..+|--|++-+.++..
T Consensus        55 ~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~  103 (131)
T 3zqc_A           55 HAWTPEEDETIFRNYLKLGS-----KWSVIAKLIPGRTDNAIKNRWNSSISKRI  103 (131)
T ss_dssp             SCCCHHHHHHHHHHHHHSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            57999999999999999984     69999999999999999988887776654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.57  E-value=6.6e-05  Score=61.79  Aligned_cols=48  Identities=27%  Similarity=0.412  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||..+|.+++.+|..     +|.+||..||++|.-+|--|++.+.++
T Consensus       110 ~~~WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             ccCCChHHHHHHHHHHHHHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            368999999999999999974     899999999999999999998877655

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.57  E-value=7.6e-05  Score=59.65  Aligned_cols=47  Identities=23%  Similarity=0.374  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ...||.||..+|.++..+|..     +|.+||..||++|.++|..|++-+..
T Consensus        11 k~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A           11 KQKFTPEEDEMLKRAVAQHGS-----DWKMIAATFPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTT-----CHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence            457999999999999999964     69999999999999999888876553

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.56  E-value=0.00048  Score=54.12  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=46.7

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      +++.......||.||.+++-....+-...  .++|..||..|.||+.-+|-.|++.+-+
T Consensus        26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s--~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           26 VSSTGEKVVLWTREADRVILTMCQEQGAQ--PHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTTSC--TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             ecCCCCEEEEeccccCHHHHHHHHhcCCC--hhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            45555678899999999887776665443  4789999999999999999999998753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.52  E-value=0.00014  Score=57.91  Aligned_cols=49  Identities=27%  Similarity=0.413  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||..+|.+++.+|..    .+|.+||..||++|.++|-.|+.-+...
T Consensus        27 k~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   75 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQKYGP----KRWSDIAKHLKGRIGKQCRERWHNHLNP   75 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCS----CCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence            357999999999999999975    3699999999999999998888766544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.29  E-value=0.00041  Score=50.74  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH---HcCCCCHHHHHHHHHhhccccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK---QLKDKTVRDVALRCRWMTKKEN  113 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~---~Lp~KTvrDVAlR~rwm~~kEn  113 (255)
                      ....||.||...|.++..+|..     .|.+|+.   .++++|-=|+.-|+|-|.+++.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~   60 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS   60 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence            5578999999999999999974     6999994   7889999999999999988764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.20  E-value=0.00017  Score=57.80  Aligned_cols=48  Identities=10%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      -.||.||..+|.+++.+|..    ..|.+||..||++|.++|..|++-+...
T Consensus         3 g~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p   50 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGP----QNWPRITSFLPNRSPKQCRERWFNHLDP   50 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCS----CCGGGGTTSCTTSCHHHHHHHHHHHTST
T ss_pred             CCCCHHHHHHHHHHHHHhCc----CCHHHHHHHHCCCCHHHHHHHHhhccCc
Confidence            46999999999999999964    3699999999999999998888665543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.19  E-value=0.00053  Score=66.92  Aligned_cols=50  Identities=24%  Similarity=0.380  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      .+...||.||...|.++|.+|..+     |.+||..|++||+.+|-.-+.|+.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGkd-----w~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            356789999999999999999875     99999999999999999988765543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.17  E-value=0.00051  Score=56.47  Aligned_cols=50  Identities=30%  Similarity=0.438  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      ...||.||..+|.++..+|..    .+|.+||..||++|..+|..|++-+....
T Consensus        58 ~~~Wt~eEd~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           58 KGPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             CCCCChHHHHHHHHHHHHhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            468999999999999999975    46999999999999999998887665543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.01  E-value=0.00096  Score=50.79  Aligned_cols=47  Identities=11%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH----cCCCCHHHHHHHHHhhccc
Q 025253           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ----LKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~----Lp~KTvrDVAlR~rwm~~k  111 (255)
                      .||.||..+|-++..+|...    +|.+||..    |+++|..||-.|.+=|.++
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g----~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC----CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            69999999999999999753    79999997    9999999998888877754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=96.74  E-value=0.0043  Score=50.54  Aligned_cols=51  Identities=14%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCCCHHHHHHHHHhhccc
Q 025253           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L----p~KTvrDVAlR~rwm~~k  111 (255)
                      .....||.||..+|-++..+|..    -+|.+||..+    +++|-.|+--|.|=|.++
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            35578999999999999999975    3799999985    899999988888777754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=96.69  E-value=0.0024  Score=50.75  Aligned_cols=53  Identities=13%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCCCHHHHHHHHHhhccc
Q 025253           55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L----p~KTvrDVAlR~rwm~~k  111 (255)
                      .......||.||..+|-++..+|...    +|.+|+..+    +++|..||--|.|=|.++
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g----~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTG----RWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSS----SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC----ChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34456789999999999999999753    799999976    899998888888877765

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.59  E-value=0.00034  Score=68.27  Aligned_cols=48  Identities=23%  Similarity=0.438  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ....||.+|.++||++|.+|+++     |.+|+..||+||+.||.. +-++-+|
T Consensus       188 ~~d~WT~eE~~lFe~al~~yGKd-----F~~I~~~lp~Ksv~e~V~-yYY~WKK  235 (482)
T 2xag_B          188 FPDEWTVEDKVLFEQAFSFHGKT-----FHRIQQMLPDKSIASLVK-FYYSWKK  235 (482)
T ss_dssp             ------------------------------------------------------
T ss_pred             cccccCHHHHHHHHHHHHHcCcc-----HHHHHHHcCCCCHHHHHH-Hhccccc
Confidence            34579999999999999999987     688999999999999984 3333444

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=96.27  E-value=0.0037  Score=56.40  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhH-HHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNR-YAKIAKQLKDKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~R-y~KIA~~Lp~KTvrDVAlR~rwm~~kE  112 (255)
                      ..||.||..+|-++..+|+..-.-.+ |.+||..||++|.++|=-|++...++.
T Consensus         9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~   62 (246)
T 1ign_A            9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR   62 (246)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence            48999999999999999987521223 999999999999999999999877664

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.13  E-value=0.00089  Score=50.04  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      +++...+-..||.||.+++-....+-..  +...|..||..| |||+-+|-.|++.+-+
T Consensus         7 ~~~~ge~vvlWTReeDR~IL~~cq~~G~--s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A            7 IKKKGEIIILWTRNDDRVILLECQKRGP--SSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5666667889999999987666554433  347999999999 9999999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.01  E-value=0.0069  Score=47.30  Aligned_cols=54  Identities=26%  Similarity=0.380  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-----CCCCHHHHHHHHHhhcccccccccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-----KDKTVRDVALRCRWMTKKENGKRRK  118 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L-----p~KTvrDVAlR~rwm~~kEn~KRRK  118 (255)
                      .+||.||-..|-++..+|.     .||+.||..+     +++|+.|+--|+--+.++-...|.+
T Consensus        31 ~~WTkEETd~Lf~L~~~fd-----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~   89 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV   89 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHHHHhC-----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999996     5999999999     5899999999998888776555554

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=95.68  E-value=0.011  Score=48.09  Aligned_cols=49  Identities=12%  Similarity=0.247  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCCCHHHHHHHHHhhcc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTK  110 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L----p~KTvrDVAlR~rwm~~  110 (255)
                      ....||.||..+|-++..+|..    -+|.+||..+    +++|-.||--|.|=|.+
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~G~----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk   68 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   68 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHGG----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            4468999999999999999963    4899999995    89999998888887776

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.07  E-value=0.048  Score=50.39  Aligned_cols=39  Identities=31%  Similarity=0.456  Sum_probs=35.9

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHH
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA  102 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVA  102 (255)
                      .+||..|-..|..|+.+|..+.    |.+||+.+++||+.+|.
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~----~~~IA~ev~~Kt~eEV~  149 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDD----IDNIAKDVEGKTPEEVI  149 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTC----HHHHTTSSTTCCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHH----HHHHHHHhcCCCHHHHH
Confidence            4799999999999999998754    89999999999999994

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.05  E-value=0.49  Score=34.50  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=40.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCCCHHHHHHHHHhhccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~--~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ....||.|....|.+++..+..+..  ...+|..  .+++.|...|+.+.|.+.-+
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~A--tPk~Il~~M~v~gLT~~~VkSHLQKYR~~   59 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERA--VPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTC--CHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCC--CcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999986631  2333433  36789999999999987643

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.35  E-value=0.26  Score=41.52  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCCCHHHHHH
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRDVAL  103 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~--~Lp~KTvrDVAl  103 (255)
                      ...||..|...|..++.+|..-.  .||..|+.  .|.+||..||--
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~--~r~~~I~~da~L~~Ks~~~v~~   51 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPL--ERLDAIARDAELVDKSETDLRR   51 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGG--GCHHHHHHHTTCTTSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCch--hHHHHHHHHhccCCCCHHHHHH
Confidence            36799999999999999998532  69999996  499999998864

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=86.99  E-value=0.9  Score=35.39  Aligned_cols=48  Identities=25%  Similarity=0.403  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-----CCCHHHHHHHHHhhcccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-----DKTVRDVALRCRWMTKKE  112 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-----~KTvrDVAlR~rwm~~kE  112 (255)
                      .+||.||-.-|=++..+|.     .||+-|++...     ++||.|+--|+--+.++-
T Consensus        31 ~~WT~eETd~LfdLc~~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l   83 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            4799999999999999996     59999999874     799999999987666553

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=83.54  E-value=1.2  Score=42.19  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHH
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVA  102 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVA  102 (255)
                      .+||.-|-..|-.|+.+|..+.    |.+||+.+. +||+.||.
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d----~~~IA~ev~~~Kt~eEV~  163 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNS----IQAIARELAPGKTLEEVR  163 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTC----HHHHHSSCCCSSSHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhH----HHHHHHHHccCCCHHHHH
Confidence            4799999999999999999754    789999998 99999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-08
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	7e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-06
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-05
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	3e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-05
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-04
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.001
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	0.001
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.002

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.5 bits (110), Expect = 5e-08
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDH 121
           W+ +E    E  LA Y  D+  +R+A +A+ ++ +T  +V  +  +    E+ K  +   
Sbjct: 4   WSAKENKAFERALAVYDKDT-PDRWANVARAVEGRTPEEV--KKHYEILVEDIKYIESGK 60

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 7e-08
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108
           + EWT E+ S L   + K+   +   R+ KIA +L  ++V DV  + + +
Sbjct: 1   APEWTEEDLSQLTRSMVKFPGGT-PGRWEKIAHELG-RSVTDVTTKAKQL 48

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 6e-07
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 58  ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRR 117
            +  WT EEQ +    + KY  D     +  I+  + +K+V  V        ++ N    
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58

Query: 118 KEDH 121
            ++ 
Sbjct: 59  LQEW 62

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 8e-06
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGK 115
           W+ +E+    +   ++  +     +  IA  L+ KTV +  L      K EN K
Sbjct: 20  WSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108
           WT  +Q +LE  L +Y   S  + + KIA+ +  K+  D   R + +
Sbjct: 15  WTQNQQKLLELALQQYPRGS-SDCWDKIARCVPSKSKEDCIARYKLL 60

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKENGKRRK 118
           EW+  E  + E+ L KY  D     +  I +  L  K++  +     +M K  +   ++
Sbjct: 3   EWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSII-EYYYMWKTTDRYVQQ 55

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRK 118
           S +WT EE+ + E  LAK+       R+ KI+K +  +TV  V  +       +N  +  
Sbjct: 2   SVKWTIEEKELFEQGLAKF-----GRRWTKISKLIGSRTVLQV--KSYARQYFKNKVKCG 54

Query: 119 EDHNSARK 126
            D  +  +
Sbjct: 55  LDKETPNQ 62

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           T WT EE  I+     +       NR+A+IAK L  +T  D A++  W +
Sbjct: 2   TSWTEEEDRIIYQAHKRL-----GNRWAEIAKLLPGRT--DNAIKNHWNS 44

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           WT EE   L  L+ KY       R++ IAK LK +  +    R RW  
Sbjct: 6   WTKEEDQRLIKLVQKY----GPKRWSVIAKHLKGRIGKQC--RERWHN 47

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.001
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
            WT +E+  L + +           +  +A Q+  KT  +    
Sbjct: 3   SWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKH 42

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           T WT EE   L+ L+ +       + +  IA  L ++T  DV  + RW  
Sbjct: 2   TRWTREEDEKLKKLVEQN----GTDDWKVIANYLPNRT--DVQCQHRWQK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.42
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.19
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.0
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.5
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.4
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.3
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.29
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.19
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.05
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.04
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.99
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.98
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.74
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.47
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.83
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.26
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.11
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	94.13

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=98.86  Aligned_cols=51  Identities=29%  Similarity=0.562  Sum_probs=47.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      +.+||.|||+.||.+|.+||.++ ++||.+||..| +||+.||..||+.|...
T Consensus         1 a~eWT~ee~~~le~Al~~~P~gt-~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKFPGGT-PGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTC-TTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            46899999999999999999997 69999999999 79999999999988754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=86.09  Aligned_cols=50  Identities=28%  Similarity=0.474  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm  108 (255)
                      ....||.||+.+|++++.+|+.+. ..||.+||..||+||..||..||++|
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~-~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGS-SDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSS-HHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCcc-chHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            345799999999999999999886 68999999999999999999999986

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.00  E-value=3e-10  Score=80.32  Aligned_cols=50  Identities=24%  Similarity=0.510  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ..||.||+++|++++.+|+.+. ..||.+||..||+||+.||..|++.+..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~-~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDT-PDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTC-TTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCC-chHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999875 5799999999999999999999987753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.2e-07  Score=66.60  Aligned_cols=49  Identities=22%  Similarity=0.361  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ....||.||..+|.++|.+|..     +|.+||..||+||+.||-.|+..+.++
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~-----~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGR-----DFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-----CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-----hHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            4578999999999999999995     499999999999999999999766543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.8e-07  Score=65.45  Aligned_cols=48  Identities=38%  Similarity=0.544  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ++.||.||..+|.+++.+|..     .|.+||..||+||..+|-.|++-+.++
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-----hHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999974     699999999999999999999766543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.3e-07  Score=59.82  Aligned_cols=44  Identities=18%  Similarity=0.287  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHh
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW  107 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rw  107 (255)
                      .+||.||..+|.+++.+|..    ..|.+||..||+||.++|-.|+..
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~----~nW~~Ia~~~~~Rt~~Qcr~r~~~   45 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMK   45 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCC----ccHHHHHHHcCCCCHHHHHHHHHH
Confidence            36999999999999999963    369999999999999999998864

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=7.2e-07  Score=61.82  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCCCHHHHHHHHHhhccccc
Q 025253           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKEN  113 (255)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~-~Lp~KTvrDVAlR~rwm~~kEn  113 (255)
                      .||.||.++|++||..|..+     |.+||. ++|+||+.||..-+=...+.+.
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd-----f~~I~~~~v~~Ks~~~~v~fYY~~Kkt~~   51 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTDR   51 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCCS
T ss_pred             CCCHHHHHHHHHHHHHHccc-----HHHHHHHHcCCCCHHHHHHHHHHHhCCch
Confidence            69999999999999999985     678997 6899999999998754444443

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5e-07  Score=64.03  Aligned_cols=47  Identities=19%  Similarity=0.337  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (255)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm  108 (255)
                      .....||.||..+|.+++..|..     .|.+||..||+||+.||..|+.-.
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~-----~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPK-----NFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTS-----CSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCC-----cHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34567999999999999999985     389999999999999999998543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1e-05  Score=61.84  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=46.4

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253           55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~  110 (255)
                      ...+...||.||.++|-+...+|...  ..-|.+||..|++||.-+|-.|++.+.+
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~--~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQ--PHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSC--TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCc--HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            33467889999999999999988853  3569999999999999999999998764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=5e-06  Score=56.36  Aligned_cols=46  Identities=33%  Similarity=0.474  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm  108 (255)
                      ...||.||..+|.++..+|..    .+|..||..||++|..+|-.|++-+
T Consensus         3 rg~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHCCCCHHHHHHHHHhh
Confidence            357999999999999999964    3599999999999999999998754

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=7.1e-06  Score=54.96  Aligned_cols=45  Identities=29%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm  108 (255)
                      ..||.||..+|.++..+|...    .|.+||..||+||..+|-.|++-+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~----~W~~Ia~~~~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD----DWKVIANYLPNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS----CHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHCCCCHHHHHHHHHhh
Confidence            479999999999999999754    499999999999999999888654

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=4.6e-06  Score=55.62  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm  108 (255)
                      ..||.||..+|-++..+|..     +|.+||..||++|..+|-.|+.-+
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhh-----HHHHHHhHcCCCCHHHHHHHHHHH
Confidence            57999999999999999983     799999999999999999888754

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=2.3e-05  Score=58.31  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCC-chhhHHHHHHHHcCCCCHHHHHHHHHhhccccc
Q 025253           60 TEWTPEEQSILEDLLAKYASD-SAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN  113 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e-~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn  113 (255)
                      ..||.||.++|.+...+|+.. .....|.+||..||++|.++|--|++-....+-
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l   56 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL   56 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccc
Confidence            469999999999999999864 345689999999999999999999887776654

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=8e-05  Score=50.14  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMT  109 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~  109 (255)
                      ..||.||...|-+++.+|...    .|.+||..++  ++|..||.-|.+=|.
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~----~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----CHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            479999999999999999654    6999999866  899999888877654

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=7.9e-05  Score=50.64  Aligned_cols=48  Identities=27%  Similarity=0.423  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH--cCCCCHHHHHHHHHhhccc
Q 025253           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ--LKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~--Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ..||.||...|.++..+|..    ..|.+||..  ++++|..||.-|++=|.+.
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~----~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~   52 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGE----GNWAAISKNYPFVNRTAVMIKDRWRTMKRL   52 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCC----ChHHHHHhhcCCCCcCHHHHHHHHHHHhcC
Confidence            47999999999999999953    369999998  5699999999998877654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.83  E-value=0.00094  Score=48.51  Aligned_cols=46  Identities=11%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH----cCCCCHHHHHHHHHhhcc
Q 025253           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ----LKDKTVRDVALRCRWMTK  110 (255)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~----Lp~KTvrDVAlR~rwm~~  110 (255)
                      .||.||..+|.++..+|...    +|.+||..    ++++|..||--|.+=|.+
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~----~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc----cHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            59999999999999999643    69999975    799999999999887764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.26  E-value=0.0041  Score=43.74  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHH--HHcCCCCHHHHHHHHHhhccc
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIA--KQLKDKTVRDVALRCRWMTKK  111 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA--~~Lp~KTvrDVAlR~rwm~~k  111 (255)
                      ...||.||...|.+|+..|..+...-  .+|.  ..+|+.|..+|+.+.|.+.-+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atp--k~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVP--KKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCH--HHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccch--HHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            46799999999999999998763111  3343  348999999999999988643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0065  Score=43.77  Aligned_cols=47  Identities=13%  Similarity=0.261  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHH
Q 025253           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (255)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~r  106 (255)
                      ..+|+.+|..+|+.+|+.+|+.. .-=|.+||+.++.+|..+|-..|.
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~-~gfW~~VA~~VGtRSaeECQ~ky~   54 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHK-PGFWSEVAAAVGSRSPEECQRKYM   54 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSS-SSHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhcCCCC-CccHHHHHHHHccCCHHHHHHHHH
Confidence            46899999999999999999996 357999999999999999877664

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.13  E-value=0.025  Score=38.25  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHH
Q 025253           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL  103 (255)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAl  103 (255)
                      .|+.-|-..|-.|+.+|..+.    |.+||..+.+||..||..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d----~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDD----IDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTC----HHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhh----HHHHHHHhcCCCHHHHHH
Confidence            499999999999999999875    689999999999999863