Citrus Sinensis ID: 025306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MGLLSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVLEPQISATPVQ
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEccccccEEEEEEEcccEEEEEEccccccccccEEEEEEEEccccccccccccccccccccEEEEccHHHHcccccEEEEEccccHHHHHccccccEEEEcccccHHHHHHHHHHHHHcccccEEcccccccccEEEEEcccEEEccccEEccccHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHcEEEEcccccccEEEEEHHHHHHHHcccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccEcHHHcccccEEEEHHHHHHHHccEEEcccEEEEEEcccccccccccHcEEEEccccccccccccccccccccccEEEEHHHHHHccccEEEEEEcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHcccccEEEEccccccEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHccccHEccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHccccEEEEcccHcccccc
Coil and Loop (DISEMBL)
mgllsnridkeslkpgdhiysWRAYVYAHHgiyigddkvihftrqgqevgtGTVIDVLLVssgttrlptpcptcasnevghgVVLSCLNCflsggnlyrfeygvspalflgkarggtctlavadpddVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLlvvdqgtmgqsgqavsiIGGPlaavlstplrlvttnvYGMAATAVTVYCASRyaadigmrrdvVKISAEDLTRRLATGLLQvlepqisatpvq
Flexible Loop (DISEMBL)
mgllsnridkeslkpgdHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRyaadigmrrdVVKISAEDLTRRLATgllqvlepqisatpvq
Low Complexity Region (SEG)
MGLLSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVLEPQISATPVQ
Disordered region (IsUnstruct)
****************DHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVL**********
Disordered Region (DISOPRED)
*GLLSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQ*********************TPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVL**********
Disordered Region (DISEMBL)
MGLLSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVLEPQISATPVQ
Disordered Region (DISPRO)
*GLLSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVLEPQ*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLATGLLQVLEPQISATPVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
224091437	260	predicted protein [Populus trichocarpa]	1.0	0.980	0.847	1e-127
449437468	264	PREDICTED: uncharacterized protein LOC10	0.996	0.962	0.815	1e-118
255586523	256	conserved hypothetical protein [Ricinus	0.992	0.988	0.819	1e-118
449515400	264	PREDICTED: uncharacterized LOC101207958	0.976	0.943	0.828	1e-117
449437470	264	PREDICTED: uncharacterized protein LOC10	0.976	0.943	0.824	1e-117
225439440	262	PREDICTED: uncharacterized protein LOC10	0.968	0.942	0.811	1e-116
297810739	259	NC domain-containing protein [Arabidopsi	0.980	0.965	0.772	1e-113
18415178	259	NC domain-containing protein-like protei	0.984	0.969	0.773	1e-113
359807101	259	uncharacterized protein LOC100791242 [Gl	0.956	0.942	0.772	1e-111
255646636	259	unknown [Glycine max]	0.956	0.942	0.776	1e-110

>gi|224091437|ref|XP_002309251.1| predicted protein [Populus trichocarpa] gi|222855227|gb|EEE92774.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/256 (84%), Positives = 235/256 (91%), Gaps = 1/256 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNRI KESLKPGDHIYSWR AY+YAHHGIYIGDDKV+HFTR+GQEVGTGTV+DVLL
Sbjct: 1   MGLLSNRISKESLKPGDHIYSWRTAYIYAHHGIYIGDDKVVHFTRRGQEVGTGTVLDVLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           +SSG  R   PC  C   + GHGV+LSCLNCFL+GG LYRFEY VSPALFL K RGGTCT
Sbjct: 61  LSSGPARSTVPCSNCTMQQDGHGVILSCLNCFLAGGILYRFEYTVSPALFLAKVRGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LAV+D +D+V+HRAKYLLENGFGCYNVFKNNCEDFAIYCKT LL+VDQGTMGQSGQAVSI
Sbjct: 121 LAVSDSNDIVVHRAKYLLENGFGCYNVFKNNCEDFAIYCKTSLLIVDQGTMGQSGQAVSI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAAVLSTP+RLVTTN+YGMAATAV VYCASRYAADIGMRRDVVK+SAEDLTRRLAT
Sbjct: 181 IGGPLAAVLSTPMRLVTTNIYGMAATAVGVYCASRYAADIGMRRDVVKVSAEDLTRRLAT 240

Query: 240 GLLQVLEPQISATPVQ 255
           GLLQV+EPQISA P+Q
Sbjct: 241 GLLQVIEPQISAAPIQ 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437468|ref|XP_004136514.1| PREDICTED: uncharacterized protein LOC101207710 [Cucumis sativus] gi|449515402|ref|XP_004164738.1| PREDICTED: uncharacterized LOC101207710 [Cucumis sativus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/255 (81%), Positives = 231/255 (90%), Gaps = 1/255 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWRA-YVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNR+++ESLKPGDHIYSWRA Y+YAHHGIY+GD +VIHFTR+GQEVGTGTV+DVLL
Sbjct: 1   MGLLSNRVNRESLKPGDHIYSWRAAYIYAHHGIYVGDGRVIHFTRRGQEVGTGTVLDVLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           VSSG  R   PC TC   E G+GVV SCLNCFL+GG LYRF+YGVSPALFL KARGGTCT
Sbjct: 61  VSSGPARSFVPCATCVPLEEGNGVVSSCLNCFLAGGVLYRFKYGVSPALFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LA +D DD+V+HRAKYLL+NGFGCYNVFKNNCEDFAIYCKTGLLVVD+ TMGQSGQAVSI
Sbjct: 121 LASSDSDDLVVHRAKYLLDNGFGCYNVFKNNCEDFAIYCKTGLLVVDERTMGQSGQAVSI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAAVLSTPLRLVTTN+YGMAATAV VYCASRYAADIGMR+DV+KI  EDLT+RLAT
Sbjct: 181 IGGPLAAVLSTPLRLVTTNIYGMAATAVGVYCASRYAADIGMRKDVMKIPVEDLTQRLAT 240

Query: 240 GLLQVLEPQISATPV 254
           GL+QV+EPQI +  V
Sbjct: 241 GLIQVVEPQILSATV 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586523|ref|XP_002533900.1| conserved hypothetical protein [Ricinus communis] gi|223526142|gb|EEF28482.1| conserved hypothetical protein [Ricinus communis]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 226/255 (88%), Gaps = 2/255 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWRA-YVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNRI +ESLKPGDHIYSWRA YVYAHHGIYIGDDKVIHFTR+GQEVGTGTV+D LL
Sbjct: 1   MGLLSNRISRESLKPGDHIYSWRAAYVYAHHGIYIGDDKVIHFTRRGQEVGTGTVLDFLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           VSSG  +   PCP C   E GHGVVLSCLNCFL+GG LYRFEY V+PALFL KARGGTCT
Sbjct: 61  VSSGPAKSHVPCPECTMQEGGHGVVLSCLNCFLAGGVLYRFEYDVNPALFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LAV+D +DVV+HRAKYLLENGFGCYN+FKNNCEDFAIYCKTGLLVVDQGTMGQSGQA SI
Sbjct: 121 LAVSDRNDVVVHRAKYLLENGFGCYNLFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAASI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAAVLSTPLRL+TTNVYGMA TAV VYC SRYA DIGMR+DVVK+S E+LTRRLA+
Sbjct: 181 IGGPLAAVLSTPLRLITTNVYGMALTAVGVYCVSRYATDIGMRKDVVKVSVENLTRRLAS 240

Query: 240 GLLQVLEPQISATPV 254
             LQV+E Q  A P+
Sbjct: 241 S-LQVVEAQTLAAPM 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515400|ref|XP_004164737.1| PREDICTED: uncharacterized LOC101207958 [Cucumis sativus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/250 (82%), Positives = 226/250 (90%), Gaps = 1/250 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWRA-YVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNR+D+ESLK GDHIYSWRA Y+YAHHGIY+GD +VIHFTR+GQEVGTGTV+DVLL
Sbjct: 1   MGLLSNRVDRESLKQGDHIYSWRAAYIYAHHGIYVGDGRVIHFTRRGQEVGTGTVLDVLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           VSSG  +   PCPTC   E G+GVV SCLNCFL+GG LYRFEYGV+PALFL KARGGTCT
Sbjct: 61  VSSGPAQSFVPCPTCIPLEEGNGVVSSCLNCFLAGGVLYRFEYGVNPALFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LA +D DD+V+HRAKYLL+NGFGCYNVFKNNCEDFAIYCKTGLLVVDQ TMGQSGQAVSI
Sbjct: 121 LASSDLDDLVVHRAKYLLDNGFGCYNVFKNNCEDFAIYCKTGLLVVDQSTMGQSGQAVSI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAAVLSTPLRLVTTNVYGMA TAV VYCASRYAADIGMR+DV+KI  EDLT RLAT
Sbjct: 181 IGGPLAAVLSTPLRLVTTNVYGMAVTAVGVYCASRYAADIGMRKDVMKIPVEDLTHRLAT 240

Query: 240 GLLQVLEPQI 249
            L+QV+EPQI
Sbjct: 241 NLIQVVEPQI 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437470|ref|XP_004136515.1| PREDICTED: uncharacterized protein LOC101207958 [Cucumis sativus]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/250 (82%), Positives = 226/250 (90%), Gaps = 1/250 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWRA-YVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNR+D+ESLK GDHIYSWRA Y+YAHHGIY+GD +VIHFTR+GQEVGTGTV+DVLL
Sbjct: 1   MGLLSNRVDRESLKQGDHIYSWRAAYIYAHHGIYVGDGRVIHFTRRGQEVGTGTVLDVLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           VSSG  +   PCPTC   E G+GVV SCLNCFL+GG LYRFEYGV+PALFL KARGGTCT
Sbjct: 61  VSSGPAQSFVPCPTCIPLEEGNGVVSSCLNCFLAGGVLYRFEYGVNPALFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LA +D DD+V+HRAKYLL+NGFGCYNVFKNNCEDFAIYCKTGLLVVD+ TMGQSGQAVSI
Sbjct: 121 LASSDSDDLVVHRAKYLLDNGFGCYNVFKNNCEDFAIYCKTGLLVVDERTMGQSGQAVSI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAAVLSTPLRLVTTNVYGMA TAV VYCASRYAADIGMR+DV+KI  EDLT RLAT
Sbjct: 181 IGGPLAAVLSTPLRLVTTNVYGMAVTAVGVYCASRYAADIGMRKDVMKIPVEDLTHRLAT 240

Query: 240 GLLQVLEPQI 249
            L+QV+EPQI
Sbjct: 241 NLIQVVEPQI 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439440|ref|XP_002266364.1| PREDICTED: uncharacterized protein LOC100260806 [Vitis vinifera] gi|296083153|emb|CBI22789.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/249 (81%), Positives = 226/249 (90%), Gaps = 2/249 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNR+DKESLKPGDHIYSWR AY+Y+HHGIY+G+++VIHFTR GQEVGTGTV+D+LL
Sbjct: 1   MGLLSNRVDKESLKPGDHIYSWRTAYIYSHHGIYVGNNEVIHFTRHGQEVGTGTVLDLLL 60

Query: 60  VSSGTTRL-PTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTC 118
           VSSG  R    PCPTC   E GHGVV SCLNCFL+GG LYRFEY VS ALFL KARGGTC
Sbjct: 61  VSSGPARRHQVPCPTCTPPEGGHGVVSSCLNCFLAGGILYRFEYSVSSALFLAKARGGTC 120

Query: 119 TLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVS 178
           TLAV+DP+++V+HRA YLL NGFGCYNVFKNNCEDFAIYCKTGLLV+DQGT+G+SGQAVS
Sbjct: 121 TLAVSDPNEIVVHRATYLLNNGFGCYNVFKNNCEDFAIYCKTGLLVIDQGTIGRSGQAVS 180

Query: 179 IIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLA 238
           IIGGPLAAVLSTPLRLVTTN+YGMAATAV VYCASR+AADIGMR+DV K+  EDLTRRLA
Sbjct: 181 IIGGPLAAVLSTPLRLVTTNIYGMAATAVGVYCASRFAADIGMRKDVAKVEVEDLTRRLA 240

Query: 239 TGLLQVLEP 247
           TGL+QV+EP
Sbjct: 241 TGLIQVIEP 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810739|ref|XP_002873253.1| NC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319090|gb|EFH49512.1| NC domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 224/251 (89%), Gaps = 1/251 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNRID+  LKPGDHIYSWR AY+YAHHGI++GDD+V+HFTR+GQEVGTGTV+D++L
Sbjct: 1   MGLLSNRIDRSGLKPGDHIYSWRTAYIYAHHGIFVGDDRVVHFTRRGQEVGTGTVLDLIL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           VSSG +R  T CPTC     GHGVV SCLNCFL+GG LYRFEY V+ A FL KARGGTCT
Sbjct: 61  VSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LAVADP+++V+HRAK+LL+NGFGCY+VFKNNCEDFAIYCKTGLLV++  TMGQSGQAVSI
Sbjct: 121 LAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTGLLVLEGRTMGQSGQAVSI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGP+AAVLSTP+RLVTTNVYGMAATA+ VYCASRYA DIGMR DV K+ AEDLTRRL++
Sbjct: 181 IGGPIAAVLSTPMRLVTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTRRLSS 240

Query: 240 GLLQVLEPQIS 250
           GL QVLEP ++
Sbjct: 241 GLFQVLEPPLA 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415178|ref|NP_568167.1| NC domain-containing protein-like protein [Arabidopsis thaliana] gi|14190475|gb|AAK55718.1|AF380637_1 AT5g06370/MHF15_11 [Arabidopsis thaliana] gi|15809734|gb|AAL06795.1| AT5g06370/MHF15_11 [Arabidopsis thaliana] gi|110741026|dbj|BAE98607.1| hypothetical protein [Arabidopsis thaliana] gi|332003624|gb|AED91007.1| NC domain-containing protein-like protein [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/252 (77%), Positives = 225/252 (89%), Gaps = 1/252 (0%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNRID+ SLKPGDHIYSWR AY+YAHHGIY+GDD+VIHFTR+GQEVGTGTV+D++L
Sbjct: 1   MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQEVGTGTVLDLIL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           VSSG +R  T CPTC     GHGVV SCLNCFL+GG LYRFEY V+ A FL KARGGTCT
Sbjct: 61  VSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LAVADP+++V+HRAK+LL+NGFGCY+VFKNNCEDFAIYCKT LLV++  TMGQSGQAVSI
Sbjct: 121 LAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVSI 180

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGP+AAVLSTP+RL+TTNVYGMAATA+ VYCASRYA DIGMR DV K+ AEDLTRRL++
Sbjct: 181 IGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTRRLSS 240

Query: 240 GLLQVLEPQISA 251
           GL QVL+P ++A
Sbjct: 241 GLFQVLDPPLAA 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807101|ref|NP_001241346.1| uncharacterized protein LOC100791242 [Glycine max] gi|255641622|gb|ACU21083.1| unknown [Glycine max]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/250 (77%), Positives = 217/250 (86%), Gaps = 6/250 (2%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNR+ +ESLKPGDHIYSWR AY+YAHHGIY+GDDKVIHFTR GQEVGTGT +D+LL
Sbjct: 1   MGLLSNRVTRESLKPGDHIYSWRTAYIYAHHGIYVGDDKVIHFTRHGQEVGTGTALDLLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           +SSG  +    CPTC + +  HGV+ SC+NCFL+GG LYRFEY V+PALFL KARGGTCT
Sbjct: 61  ISSGPAKPRESCPTCTAPQEEHGVISSCMNCFLAGGVLYRFEYAVTPALFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LAV+D DD+V+HRAKYLLENGFGCYNVFK NCEDFAIYCKTGLL      +GQSGQAVSI
Sbjct: 121 LAVSDDDDIVVHRAKYLLENGFGCYNVFKKNCEDFAIYCKTGLL-----EIGQSGQAVSI 175

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAA LS+PLR+VTTNVYGMAATAV VYCASRY ADIGMR +VVK+  E+LT RLAT
Sbjct: 176 IGGPLAAALSSPLRMVTTNVYGMAATAVGVYCASRYMADIGMRPNVVKVPVEELTSRLAT 235

Query: 240 GLLQVLEPQI 249
           GLLQV+EPQI
Sbjct: 236 GLLQVVEPQI 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646636|gb|ACU23792.1| unknown [Glycine max]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 215/250 (86%), Gaps = 6/250 (2%)

Query: 1   MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
           MGLLSNR+ +ESLKPGDHIYSWR AY+YAHHGIY+ DDKVIHFTR+GQEVGTGT +D+LL
Sbjct: 1   MGLLSNRVTRESLKPGDHIYSWRTAYIYAHHGIYVSDDKVIHFTRRGQEVGTGTALDLLL 60

Query: 60  VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
           +SSG  +    CPTC + +  HGV+ SCLNCFL+GG LYRFEY V+PALFL KARGGTCT
Sbjct: 61  ISSGPAKSRESCPTCMAPQEEHGVISSCLNCFLAGGVLYRFEYAVTPALFLAKARGGTCT 120

Query: 120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
           LAV+D DDVVIHRAKYLLENGFGCYNVFK NCEDFAIYCKTGLL      +GQSGQAVSI
Sbjct: 121 LAVSDSDDVVIHRAKYLLENGFGCYNVFKKNCEDFAIYCKTGLL-----EIGQSGQAVSI 175

Query: 180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
           IGGPLAA LS+PLR+VTTNVYGMAATAV VYCASRY ADIGMR + VK+  E LT RLAT
Sbjct: 176 IGGPLAAALSSPLRMVTTNVYGMAATAVGVYCASRYMADIGMRPNAVKVPVEQLTTRLAT 235

Query: 240 GLLQVLEPQI 249
           GLLQV+EPQI
Sbjct: 236 GLLQVVEPQI 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2164260	259	AT5G06370 "AT5G06370" [Arabido	0.984	0.969	0.773	1.2e-106
TAIR|locus:2076964	252	AT3G02700 "AT3G02700" [Arabido	0.921	0.932	0.570	7e-70
TAIR|locus:505006091	260	AT1G01225 [Arabidopsis thalian	0.917	0.9	0.546	2.1e-68
TAIR|locus:504955372	263	AT4G00905 "AT4G00905" [Arabido	0.929	0.901	0.522	1.7e-66
TAIR|locus:2171347	242	AT5G16330 "AT5G16330" [Arabido	0.874	0.921	0.518	5.9e-57
TAIR|locus:2171387	283	AT5G16360 "AT5G16360" [Arabido	0.733	0.660	0.576	3e-53

TAIR|locus:2164260 AT5G06370 "AT5G06370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 195/252 (77%), Positives = 225/252 (89%)

Query:     1 MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
             MGLLSNRID+ SLKPGDHIYSWR AY+YAHHGIY+GDD+VIHFTR+GQEVGTGTV+D++L
Sbjct:     1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQEVGTGTVLDLIL 60

Query:    60 VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
             VSSG +R  T CPTC     GHGVV SCLNCFL+GG LYRFEY V+ A FL KARGGTCT
Sbjct:    61 VSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTCT 120

Query:   120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
             LAVADP+++V+HRAK+LL+NGFGCY+VFKNNCEDFAIYCKT LLV++  TMGQSGQAVSI
Sbjct:   121 LAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVSI 180

Query:   180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLAT 239
             IGGP+AAVLSTP+RL+TTNVYGMAATA+ VYCASRYA DIGMR DV K+ AEDLTRRL++
Sbjct:   181 IGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTRRLSS 240

Query:   240 GLLQVLEPQISA 251
             GL QVL+P ++A
Sbjct:   241 GLFQVLDPPLAA 252

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2076964 AT3G02700 "AT3G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 137/240 (57%), Positives = 170/240 (70%)

Query:     1 MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTR-QGQEVGTGTVIDVL 58
             MG LSN+I ++ +KPGDHIYSWR AY+YAHHGIY+G+ +V HFTR  GQE GTGT +D +
Sbjct:     1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60

Query:    59 LVSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTC 118
             +VSS       PCP C       GV+ SCL CFL+GG+LY FEY VSPA+FL K RGG C
Sbjct:    61 IVSSSHNHGDNPCPDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGVC 120

Query:   119 TLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVS 178
             T+A +DP + VI+RA +LL+NGFG YNVFKNNCEDFAIYCKTGLLV +   +G+SGQA S
Sbjct:   121 TIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVANTD-VGRSGQAAS 179

Query:   179 IIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRLA 238
             I+    + +LS+PLR V     G+A     +YC SR  +DIGMR DV K+  E L   +A
Sbjct:   180 IVAAA-SVLLSSPLRFVA-GFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVERLVADVA 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006091 AT1G01225 [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 130/238 (54%), Positives = 174/238 (73%)

Query:     1 MGLLSNRIDKESLKPGDHIYSWRA-YVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
             MGLL+N+I++E LKPGDHIY++RA + Y+HHGI++G  KV+HF  +   + + T     +
Sbjct:     1 MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPMDSSTSS---I 57

Query:    60 VSSGTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCT 119
              SS +  + +  P C   +   GVVLSCL+CFL  G+LY FEYGVSP++FL K RGGTCT
Sbjct:    58 SSSSSEDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCT 117

Query:   120 LAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQAVSI 179
              A +D  D VIHRA YLL+NGFG Y++FKNNCEDFA+YCKTGLL++D+  +G+SGQA SI
Sbjct:   118 TAQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQASSI 177

Query:   180 IGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLTRRL 237
             +G PLAA+LS+P +L+  +  G+A     +YC SRYA DIG+R DV+K+S EDL   L
Sbjct:   178 VGAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLALNL 235

GO:0005634 "nucleus" evidence=ISM

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:504955372 AT4G00905 "AT4G00905" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/245 (52%), Positives = 171/245 (69%)

Query:     1 MGLLSNRIDKESLKPGDHIYSWRA-YVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLL 59
             MG+L+N+++++ LKPGDHIY++RA + Y+HHG+++G  KV+HF  +   +          
Sbjct:     1 MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASSSSS 60

Query:    60 VSSGTTRL----PTPCPT---CASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGK 112
              SS  + +      PCPT   C       GVVLSCL+CFL  G+LYRF+YGVS ++FL +
Sbjct:    61 SSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120

Query:   113 ARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQ 172
              RGGTCT A +DP   VIHRA +LL+NGFG YNVF+NNCEDFA+YCKTGLL++D+  +G+
Sbjct:   121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNGVGR 180

Query:   173 SGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAED 232
             SGQA SIIG PLAA+LS+PL L+  N  G+A     +YC SRYA DIG+R DV+K+  ED
Sbjct:   181 SGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIKVPVED 240

Query:   233 LTRRL 237
             L   L
Sbjct:   241 LALNL 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171347 AT5G16330 "AT5G16330" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 127/245 (51%), Positives = 159/245 (64%)

Query:     1 MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFT-RQGQEVGTGTVIDVL 58
             +G +SN+I ++ LKPGDHIYSWR AY+Y+HHGIYIGD+KVIHFT   G E GTGT +D +
Sbjct:     9 IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68

Query:    59 LVSS-GTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGT 117
             +VS     +   PC  C       GV+ SCL+CFL+GGN+Y FEY VSPA F+ K R GT
Sbjct:    69 VVSVIPNHKGDNPCSNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPRRGT 128

Query:   118 CTLAVADPDDVVIHRAKYLL-ENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGTMGQSGQA 176
             CT+A +DP D VI RAKYLL  NGFG Y+  +NNCEDFAIYCKT LLV     +G+ GQA
Sbjct:   129 CTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLVGKDYVLGRGGQA 188

Query:   177 VSIIGGPLAAVLSTPLRLVTTNVYGMAATAVTVYCASRYAADIGMRRDVVKISAEDLT-R 235
              S+      A LS P        +G  + A+ ++      ADIGMR+D +K+  E L  R
Sbjct:   189 SSVSAAAWLAQLS-P--------FG--SKAIQLF------ADIGMRKDAIKVPVESLVPR 231

Query:   236 RLATG 240
               ATG
Sbjct:   232 AYATG 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171387 AT5G16360 "AT5G16360" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 113/196 (57%), Positives = 139/196 (70%)

Query:     1 MGLLSNRIDKESLKPGDHIYSWR-AYVYAHHGIYIGDDKVIHFTRQGQ-EVGTGTVIDVL 58
             MGL S++I ++ LKPGDHIYSWR AY+Y+HHG+Y+GD+KVIHFTR G  E GTGTV+D +
Sbjct:     1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60

Query:    59 LVSS--GTTRLPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGG 116
             +  S     R    C  C       GV+ SCL+CFL+GGNL+ FEY  SP++FL K RGG
Sbjct:    61 IDISIPNHGRRDKKCIDCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK-RGG 119

Query:   117 TCTLAVADPDDVVIHRAKYLL-ENGFGCYNVFKNNCEDFAIYCKTGLLVVDQGT-MGQSG 174
             TCT+A +DP D VI RAK+LL +NGFG Y++  NNCEDFAIYCKTGL V+   T  G SG
Sbjct:   120 TCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVLSVATKFGCSG 179

Query:   175 QA--VSIIGGPLAAVL 188
             QA  VS  GG +A  L
Sbjct:   180 QANSVSAAGGVVALTL 195


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      255       255   0.00085  114 3  11 22  0.43    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  187 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.03u 0.10s 21.13t   Elapsed:  00:00:01
  Total cpu time:  21.03u 0.10s 21.13t   Elapsed:  00:00:01
  Start:  Fri May 10 03:10:33 2013   End:  Fri May 10 03:10:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VI0448 hypothetical protein (261 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam04970	125	pfam04970, LRAT, Lecithin retinol acyltransferase	2e-31

>gnl|CDD|203136 pfam04970, LRAT, Lecithin retinol acyltransferase

 Score =  112 bits (282), Expect = 2e-31
 Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 33/155 (21%)

Query: 9   DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLP 68
           D    + GD I  +R  +Y HHGIY+GD  V+H     ++  + +      +    +   
Sbjct: 4   DSPKPRRGDLIEIFRT-LYTHHGIYVGDGYVVHLAPDSEKSVSNSR----SILGVLSNKA 58

Query: 69  TPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDV 128
                        GV  SCL  F  G N                            P D 
Sbjct: 59  -------------GVKKSCLEDFAGGDNYRVNNKLD--------------DKYQPLPPDE 91

Query: 129 VIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLL 163
           VI RA+ L+      Y++  NNCE F  YC+ GL 
Sbjct: 92  VIQRAEELVGQEV-PYSLLSNNCEHFVTYCRYGLS 125

The full-length members of this family are representatives of a novel class II tumour-suppressor family, designated as H-REV107-like. This domain is the catalytic N-terminal proline-rich region of the protein. The downstream region is a putative C-terminal transmembrane domain which is found to be crucial for cellular localisation, but not necessary for the enzyme activity. H-REV107-like proteins are homologous to lecithin retinol acyltransferase (LRAT), an enzyme that catalyzes the transfer of the sn-1 acyl group of phosphatidylcholine to all-trans-retinol and forming a retinyl ester. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF04970	125	LRAT: Lecithin retinol acyltransferase; InterPro:	99.98
PF08405	358	Calici_PP_N: Viral polyprotein N-terminal; InterPr	98.47
TIGR02219	134	phage_NlpC_fam putative phage cell wall peptidase,	98.4
PRK10838	190	spr outer membrane lipoprotein; Provisional	98.37
PRK11479	274	hypothetical protein; Provisional	98.23
PF00877	105	NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The	98.0
PRK13914	481	invasion associated secreted endopeptidase; Provis	97.95
COG0791	197	Spr Cell wall-associated hydrolases (invasion-asso	97.83
PF05708	158	DUF830: Orthopoxvirus protein of unknown function	97.66
PRK10030	197	hypothetical protein; Provisional	97.01
TIGR02594	129	conserved hypothetical protein TIGR02594. Members	96.3
PRK11470	200	hypothetical protein; Provisional	96.2
PF05608	136	DUF778: Protein of unknown function (DUF778); Inte	96.16
PF05903	151	Peptidase_C97: PPPDE putative peptidase domain; In	95.53
PF05382	145	Amidase_5: Bacteriophage peptidoglycan hydrolase ;	92.84
KOG0324	214	consensus Uncharacterized conserved protein [Funct	92.47
PF06672	216	DUF1175: Protein of unknown function (DUF1175); In	87.68
COG3863	231	Uncharacterized distant relative of cell wall-asso	86.46
PF06940	164	DUF1287: Domain of unknown function (DUF1287); Int	82.25

>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes

Probab=99.98  E-value=5.7e-33  Score=225.15  Aligned_cols=122  Identities=37%  Similarity=0.602  Sum_probs=80.3

Q ss_pred             CCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEeec
Q 025306            9 DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCL   88 (255)
Q Consensus         9 ~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~L   88 (255)
                      +..+++|||||+++|. .|+|||||+|+++|||+.++++.....                 ....+++......|+.++|
T Consensus         3 ~~~~~~~GD~I~~~r~-~y~H~gIYvG~~~ViH~~~~~~~~~~~-----------------~~~~~~~~~~~~~V~~~~l   64 (125)
T PF04970_consen    3 DKKRLKPGDHIEVPRG-LYEHWGIYVGDGEVIHFSGPGEISVSN-----------------RSSICGFSKKKAEVKKDSL   64 (125)
T ss_dssp             ---S--TT-EEEEEET-TEEEEEEEEETTEEEEEE-S-SSS-SS-----------------SSGGGGT--S-EEEEEEEH
T ss_pred             cccCCCCCCEEEEecC-CccEEEEEecCCeEEEecccccccccc-----------------cccccceecCCCEEEEEEh
Confidence            4578999999999995 899999999999999999866422110                 1123344445568889999


Q ss_pred             eeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCCe
Q 025306           89 NCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLL  163 (255)
Q Consensus        89 ~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl~  163 (255)
                      ++|+.|..+.+.+|     ++         ...+|+++++|++||+++|++++ +|||++|||||||+||+||..
T Consensus        65 ~~~~~~~~~~v~~~-----~~---------~~~~~~~~~~iv~rA~~~lg~~~-~Y~l~~nNCEhFa~~c~tG~~  124 (125)
T PF04970_consen   65 EEFAQGRKVRVNNY-----LD---------HRYKPFPPEEIVERAESRLGKEF-EYNLLFNNCEHFATWCRTGKS  124 (125)
T ss_dssp             HHHHTTSEEEE--G-----GG---------GTS--S-HHHHHHHHHHTTT-EE-SS---HHHHHHHHHHHHHS--
T ss_pred             HHhcCCCEEEEEec-----CC---------ccCCCCCHHHHHHHHHHHHcCCC-ccCCCcCCHHHHHHHHHcCCC
Confidence            99999888766544     11         23578999999999999998644 999999999999999999974

It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.

>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily

Probab=98.47  E-value=6.2e-07  Score=83.59  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=33.0

Q ss_pred             cCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceee
Q 025306            8 IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVG   50 (255)
Q Consensus         8 v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~   50 (255)
                      .+..++.+|++|+++.+ .+.|+|||+|+|+++-...++..++
T Consensus         4 ~~a~EP~~GsilE~~eG-~~yHYaIYi~~G~~lgvh~p~aai~   45 (358)
T PF08405_consen    4 MPAREPLIGSILEMDEG-DIYHYAIYIGKGLVLGVHSPGAAIS   45 (358)
T ss_pred             CCCCCCCCCceEEEecC-eeEEEEEEecCCeEEeecCcchhce
Confidence            46679999999999995 5789999999999975554444333

; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms

>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family

Probab=98.40  E-value=5.2e-07  Score=74.48  Aligned_cols=40  Identities=18%  Similarity=0.191  Sum_probs=33.2

Q ss_pred             cccCCCCCCCCCEEEEec--CCCCceEEEEEcCCeEEEeeCC
Q 025306            6 NRIDKESLKPGDHIYSWR--AYVYAHHGIYIGDDKVIHFTRQ   45 (255)
Q Consensus         6 ~~v~~~~lkpGD~I~~~r--~~~y~H~GIYvGdg~VIH~~~~   45 (255)
                      .+|+.+++||||+|+|.-  +....|.|||+|++++||.+..
T Consensus        70 ~~v~~~~~qpGDlvff~~~~~~~~~HvGIy~G~g~~iHa~~~  111 (134)
T TIGR02219        70 VPVPCDAAQPGDVLVFRWRPGAAAKHAAIAASPTRFIHAYDG  111 (134)
T ss_pred             cccchhcCCCCCEEEEeeCCCCCCcEEEEEeCCCcEEEECCC
Confidence            467888999999999963  2236899999999999999863

Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.

>PRK10838 spr outer membrane lipoprotein; Provisional

Probab=98.37  E-value=6.8e-07  Score=78.47  Aligned_cols=42  Identities=24%  Similarity=0.525  Sum_probs=35.4

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCC
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQ   45 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~   45 (255)
                      .+..|+.++++|||+|+|..+....|+|||+|++++||.+..
T Consensus       120 ~g~~V~~~~lqpGDLVfF~~~~~~~HVGIyiGng~~IHAs~~  161 (190)
T PRK10838        120 MGKSVSRSKLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTS  161 (190)
T ss_pred             cCcCcccCCCCCCcEEEECCCCCCCEEEEEecCCEEEEeCCC
Confidence            457889999999999999753335799999999999999864

>PRK11479 hypothetical protein; Provisional

Probab=98.23  E-value=6.3e-06  Score=76.12  Aligned_cols=40  Identities=33%  Similarity=0.543  Sum_probs=33.8

Q ss_pred             CcccCCCCCCCCCEEEEec------------CCCCceEEEEEcCCeEEEeeC
Q 025306            5 SNRIDKESLKPGDHIYSWR------------AYVYAHHGIYIGDDKVIHFTR   44 (255)
Q Consensus         5 ~~~v~~~~lkpGD~I~~~r------------~~~y~H~GIYvGdg~VIH~~~   44 (255)
                      +++|+..++||||+|++..            ...++|.|||+|++.|||+++
T Consensus        57 g~~Vs~~~LqpGDLVFfst~t~~S~~Ik~~T~s~~SHVgIylGdg~vIEA~g  108 (274)
T PRK11479         57 IKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIYLGENNVAEATG  108 (274)
T ss_pred             CcccChhhCCCCCEEEEecCCccccceecccCCCCcEEEEEecCCeEEEcCC
Confidence            5689999999999999852            124789999999999999864

>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins

Probab=98.00  E-value=6.3e-06  Score=64.27  Aligned_cols=38  Identities=39%  Similarity=0.627  Sum_probs=33.0

Q ss_pred             ccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeC
Q 025306            7 RIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTR   44 (255)
Q Consensus         7 ~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~   44 (255)
                      .++..+++|||+|++.......|.|||+|++++||...
T Consensus        46 ~~~~~~~~pGDlif~~~~~~~~Hvgiy~g~~~~iha~~   83 (105)
T PF00877_consen   46 RVPISELQPGDLIFFKGGGGISHVGIYLGDGKFIHASG   83 (105)
T ss_dssp             HEEGGG-TTTEEEEEEGTGGEEEEEEEEETTEEEEEET
T ss_pred             ccchhcCCcccEEEEeCCccCCEeEEEEeCCeEEEeCC
Confidence            47889999999999988446789999999999999993

The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=97.95  E-value=1e-05  Score=79.70  Aligned_cols=42  Identities=29%  Similarity=0.513  Sum_probs=35.1

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCC
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQ   45 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~   45 (255)
                      .+.+|+..+++|||+|||..+....|+|||+|+|++||....
T Consensus       418 ~G~~Vs~selqpGDLVFF~~~~~~~HVGIYiGnG~~IHA~~~  459 (481)
T PRK13914        418 STTRISESQAKPGDLVFFDYGSGISHVGIYVGNGQMINAQDN  459 (481)
T ss_pred             cCcccccccCCCCCEEEeCCCCCCCEEEEEeCCCEEEEcCCC
Confidence            356788999999999999753346799999999999997653

>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]

Probab=97.83  E-value=2.4e-05  Score=67.56  Aligned_cols=42  Identities=31%  Similarity=0.622  Sum_probs=36.1

Q ss_pred             CcccCCCCCCCCCEEEEec--CCCCceEEEEEcCCeEEEeeCCC
Q 025306            5 SNRIDKESLKPGDHIYSWR--AYVYAHHGIYIGDDKVIHFTRQG   46 (255)
Q Consensus         5 ~~~v~~~~lkpGD~I~~~r--~~~y~H~GIYvGdg~VIH~~~~g   46 (255)
                      +.+++..+++|||+|+|..  .....|.|||+|+|++||.+..+
T Consensus       131 g~~v~~~~~~~GDlvff~~~~~~~~~Hvgiy~g~g~~iha~~~g  174 (197)
T COG0791         131 GTAVDDSDLQPGDLVFFNTGGGSSANHVGIYLGNGQFIHAAGSG  174 (197)
T ss_pred             cCccChhhCCCCCEEEEecCCCCCCCeEEEEecCCeEEecCCCC
Confidence            5678888899999999975  34578999999999999998765

>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C

Probab=97.66  E-value=0.00014  Score=60.19  Aligned_cols=95  Identities=27%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEecC------------CCCceEEEEEcCC----eEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCC
Q 025306           12 SLKPGDHIYSWRA------------YVYAHHGIYIGDD----KVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCA   75 (255)
Q Consensus        12 ~lkpGD~I~~~r~------------~~y~H~GIYvGdg----~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~   75 (255)
                      +||+||+|++...            ..|.|.|||++++    .|+|++..                              
T Consensus         1 ~l~~GDIil~~~~~~~s~~i~~~t~~~~~HvgI~~~~~~~~~~viea~~~------------------------------   50 (158)
T PF05708_consen    1 KLQTGDIILTRGKSSLSKAIRPVTSSPYSHVGIVIGDEGQEPYVIEATPG------------------------------   50 (158)
T ss_dssp             ---TT-EEEEEE-SCCHHHHHHHHTSS--EEEEEEEETTE-EEEEEEETT------------------------------
T ss_pred             CCCCeeEEEEECCchHHHHHHHHhCCCCCEEEEEEecCCCceEEEEeccC------------------------------
Confidence            5899999999541            3689999999987    68888531                              


Q ss_pred             CCCcccceEEeeceeeeeC-CeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhccccccccc------c
Q 025306           76 SNEVGHGVVLSCLNCFLSG-GNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVF------K  148 (255)
Q Consensus        76 ~~~~~~gVv~~~L~~Fl~G-~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~------~  148 (255)
                           .||....|+.|+.. +...++.+..  ..             ...-.+.+++.|++++  | .+|++.      .
T Consensus        51 -----~Gv~~~~l~~~~~~~~~~~V~r~~~--~~-------------~~~~~~~~~~~a~~~~--g-~~Y~~~~~~~~~~  107 (158)
T PF05708_consen   51 -----DGVRLEPLSDFLKRNEKIAVYRLKD--PL-------------SEEQRQKAAEFAKSYI--G-KPYDFNFSLDDDR  107 (158)
T ss_dssp             -----TCEEEEECHHHHHCCCEEEEEEECC--GT-------------TCHHHHHHHHHHHCCT--T-S-B-CC-HCCSSS
T ss_pred             -----CCeEEeeHHHHhcCCceEEEEEECC--CC-------------CHHHHHHHHHHHHHHc--C-CCccccccCCCCC
Confidence                 24566677778774 3333322211  10             1224566778888887  4 478877      3


Q ss_pred             cchHHHHHHHh
Q 025306          149 NNCEDFAIYCK  159 (255)
Q Consensus       149 NNCEHFA~~Ck  159 (255)
                      -.|=.|+..|-
T Consensus       108 ~yCSelV~~~y  118 (158)
T PF05708_consen  108 FYCSELVAEAY  118 (158)
T ss_dssp             B-HHHHHHHHH
T ss_pred             EEcHHHHHHHH
Confidence            46888888773

>PRK10030 hypothetical protein; Provisional

Probab=97.01  E-value=0.0023  Score=56.44  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             ccCCCCCCCCCEEEEec------------CCCCceEEEEEcC---CeEEEee
Q 025306            7 RIDKESLKPGDHIYSWR------------AYVYAHHGIYIGD---DKVIHFT   43 (255)
Q Consensus         7 ~v~~~~lkpGD~I~~~r------------~~~y~H~GIYvGd---g~VIH~~   43 (255)
                      .....++++||+|+..-            ...|+|.||+++.   -.|+|+.
T Consensus        15 ~~~~~~l~~GDlif~~g~~~~s~aI~~~T~s~~SHVGIi~~~~~~~~ViEAv   66 (197)
T PRK10030         15 PAFAWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMIVKRNKKPYVFEAV   66 (197)
T ss_pred             hhhhcCCCCCCEEEEeCCCcHhHHHhHhhCCCCceEEEEEEECCcEEEEEec
Confidence            34456899999999843            1368999998863   2478875

>TIGR02594 conserved hypothetical protein TIGR02594

Probab=96.30  E-value=0.012  Score=48.67  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=26.1

Q ss_pred             CCCCCCCCEEEEecCCCCceEEEEEcCC-e--EEEeeC
Q 025306           10 KESLKPGDHIYSWRAYVYAHHGIYIGDD-K--VIHFTR   44 (255)
Q Consensus        10 ~~~lkpGD~I~~~r~~~y~H~GIYvGdg-~--VIH~~~   44 (255)
                      .++++|||+|+|.++ ...|+|||+|++ .  .|+.-+
T Consensus        71 v~~p~~GDiv~f~~~-~~~HVGi~~g~~~~~g~i~~lg  107 (129)
T TIGR02594        71 LSKPAYGCIAVKRRG-GGGHVGFVVGKDKQTGTIIVLG  107 (129)
T ss_pred             CCCCCccEEEEEECC-CCCEEEEEEeEcCCCCEEEEee
Confidence            347899999999884 367999999854 2  566665

Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.

>PRK11470 hypothetical protein; Provisional

Probab=96.20  E-value=0.014  Score=51.87  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=24.3

Q ss_pred             CCCCCCCEEEEec------------CCCCceEEEEEc---CC-eEEEeeC
Q 025306           11 ESLKPGDHIYSWR------------AYVYAHHGIYIG---DD-KVIHFTR   44 (255)
Q Consensus        11 ~~lkpGD~I~~~r------------~~~y~H~GIYvG---dg-~VIH~~~   44 (255)
                      .+++.||+||..-            +..++|.||.++   ++ .|+|+..
T Consensus         7 ~~l~~GDLvF~~~~~~~~~aI~~aT~s~~sHvGII~~~~~~~~~VlEA~~   56 (200)
T PRK11470          7 AEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRV   56 (200)
T ss_pred             CCCCCCCEEEEeCCcchhHHHHhccCCccceEEEEEEEcCCceEEEEecC
Confidence            5899999999952            134579999984   33 4667654

>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function

Probab=96.16  E-value=0.036  Score=46.54  Aligned_cols=38  Identities=24%  Similarity=0.450  Sum_probs=31.2

Q ss_pred             CCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCC
Q 025306          123 ADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGL  162 (255)
Q Consensus       123 ~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl  162 (255)
                      ...=|+.|++|...-++  ..||||.+||.+||-.|..-.
T Consensus        76 ~~~wD~Av~~a~~~y~~--r~yNlf~~NCHSfVA~aLN~m  113 (136)
T PF05608_consen   76 AESWDDAVQKASEEYKH--RMYNLFTDNCHSFVANALNRM  113 (136)
T ss_pred             HHHHHHHHHHHHHHHhh--CceeeeccCcHHHHHHHHHhc
Confidence            34567788888887744  699999999999999997766

>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences

Probab=95.53  E-value=0.013  Score=49.40  Aligned_cols=30  Identities=20%  Similarity=0.381  Sum_probs=19.5

Q ss_pred             HHHHHHhhhccc--ccccccccchHHHHHHHh
Q 025306          130 IHRAKYLLENGF--GCYNVFKNNCEDFAIYCK  159 (255)
Q Consensus       130 V~RA~~~L~~G~--~~Ynl~~NNCEHFA~~Ck  159 (255)
                      +++....|+..+  ..|||+.+||-||+....
T Consensus        87 ~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~  118 (151)
T PF05903_consen   87 FEEILRSLSREFTGDSYHLLNRNCNHFSDALC  118 (151)
T ss_dssp             HHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcchhhhhhhhHHHHHHH
Confidence            344444444422  599999999999997663

The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.

>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3

Probab=92.84  E-value=0.19  Score=42.64  Aligned_cols=33  Identities=33%  Similarity=0.499  Sum_probs=28.4

Q ss_pred             CCCCCCEEEEec----CCCCceEEEEEcCCeEEEeeC
Q 025306           12 SLKPGDHIYSWR----AYVYAHHGIYIGDDKVIHFTR   44 (255)
Q Consensus        12 ~lkpGD~I~~~r----~~~y~H~GIYvGdg~VIH~~~   44 (255)
                      ++|+||++.+.+    ...+-|.||+++..++||..-
T Consensus        75 ~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y  111 (145)
T PF05382_consen   75 NLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNY  111 (145)
T ss_pred             cccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecC
Confidence            899999999854    235779999999999999985

5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].

>KOG0324 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=0.087  Score=47.27  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=26.2

Q ss_pred             CChHHHHHHHHHhhhccc--ccccccccchHHHHHHH
Q 025306          124 DPDDVVIHRAKYLLENGF--GCYNVFKNNCEDFAIYC  158 (255)
Q Consensus       124 ~p~eeVV~RA~~~L~~G~--~~Ynl~~NNCEHFA~~C  158 (255)
                      +-+++.|++-...|++.+  ..|||+.+||-||..-.
T Consensus        84 d~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~l  120 (214)
T KOG0324|consen   84 DLTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNEL  120 (214)
T ss_pred             CCCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHH
Confidence            345666777777776533  48999999999998754

>PF06672 DUF1175: Protein of unknown function (DUF1175); InterPro: IPR009558 This family consists of several hypothetical bacterial proteins of around 210 residues in length

Probab=87.68  E-value=0.95  Score=40.78  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=27.9

Q ss_pred             CCCCCCCCCEEEEecC--CCCceEEEEEcC----CeEEEeeCCC
Q 025306            9 DKESLKPGDHIYSWRA--YVYAHHGIYIGD----DKVIHFTRQG   46 (255)
Q Consensus         9 ~~~~lkpGD~I~~~r~--~~y~H~GIYvGd----g~VIH~~~~g   46 (255)
                      +.++.+|||+||+..+  ....|.-||+|+    .-|-|-.+.+
T Consensus       132 dl~~A~pGDL~Ff~~~d~~~pfHlMI~~g~~~~~~ivYHTG~~g  175 (216)
T PF06672_consen  132 DLEQARPGDLLFFHQGDDQMPFHLMIWVGRDAPPWIVYHTGPEG  175 (216)
T ss_pred             hhhhcCCCcEEEecCCCCCcceEEEEEEcCCcceEEEEecCCCC
Confidence            3578899999998762  224499999999    6667765543

The function of this family is unknown.

>COG3863 Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]

Probab=86.46  E-value=1.7  Score=38.84  Aligned_cols=42  Identities=29%  Similarity=0.564  Sum_probs=30.7

Q ss_pred             cccCCCCCCCCCEEEE-----------ec-----CCCCceEEEEEcCCeEEEeeCCCc
Q 025306            6 NRIDKESLKPGDHIYS-----------WR-----AYVYAHHGIYIGDDKVIHFTRQGQ   47 (255)
Q Consensus         6 ~~v~~~~lkpGD~I~~-----------~r-----~~~y~H~GIYvGdg~VIH~~~~g~   47 (255)
                      +..++.-++|||.++.           .+     ...|.|.|||.|.++++...++|-
T Consensus        72 ~~~dr~v~~~gd~~~gdyPTr~g~i~~t~~~~~~~~H~gHagmy~~a~~~VEs~psGV  129 (231)
T COG3863          72 NNLDRSVLQPGDILLGDYPTRGGAIWLTDTFGNIVGHWGHAGMYIGAGQMVESWPSGV  129 (231)
T ss_pred             hhhhhhhcCCcchhhccCCCCcceEEEEcccccccccccceEEEEcCCcEEeeccCce
Confidence            3456777888888776           12     134568899999999999988753

>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=82.25  E-value=3.1  Score=36.01  Aligned_cols=40  Identities=33%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             CCCCCCCCCEEEEecCCCCceEEEEEc----CC--eEEEeeCCCce
Q 025306            9 DKESLKPGDHIYSWRAYVYAHHGIYIG----DD--KVIHFTRQGQE   48 (255)
Q Consensus         9 ~~~~lkpGD~I~~~r~~~y~H~GIYvG----dg--~VIH~~~~g~~   48 (255)
                      ..++-+|||+|.+..+....|.||...    +|  .|||..+++..
T Consensus       103 ~~~~~q~GDIVtw~l~~~~~HIgIVSd~r~~~G~p~viHNiG~g~~  148 (164)
T PF06940_consen  103 NPEDWQPGDIVTWRLPGGLPHIGIVSDRRSKDGVPLVIHNIGPGQR  148 (164)
T ss_pred             ChhhcCCCCEEEEeCCCCCCeEEEEeCCcCCCCCEEEEEecCCCcc
Confidence            447899999999865445689999875    34  79999987653

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
4dpz_X	137	HRAS-like suppressor 2; alpha/beta fold, enzyme ph	5e-31
4dot_A	140	Group XVI phospholipase A2; alpha/beta fold, phosp	5e-27
2hbw_A	235	NLP/P60 protein; NLP/P60 family protein, structura	5e-06
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	1e-04
3ne0_A	214	Resuscitation promoting factor interacting protei;	6e-04
3pbi_A	214	Invasion protein; peptidoglycan hydrolase, extrace	7e-04
4fdy_A	313	Similar to lipoprotein, NLP/P60 family; SLT/lysozy	7e-04

>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 2kyt_A Length = 137

 Score =  111 bits (278), Expect = 5e-31
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 33/161 (20%)

Query: 7   RIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTR 66
            + +   + GD I   R + YAH  IY+GD  V+H     +  G G              
Sbjct: 2   ALARPRPRLGDLIEISR-FGYAHWAIYVGDGYVVHLAPASEIAGAGA------------- 47

Query: 67  LPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPD 126
                 +  S      +V   L   ++GG+ YR                         P 
Sbjct: 48  -----ASVLSALTNKAIVKKELLSVVAGGDNYRV-------------NNKHDDRYTPLPS 89

Query: 127 DVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQ 167
           + ++ RA+ L+      Y++  +NCE F  + + G+   DQ
Sbjct: 90  NKIVKRAEELV-GQELPYSLTSDNCEHFVNHLRYGVSRSDQ 129

>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} Length = 140

 Score =  100 bits (251), Expect = 5e-27
 Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 33/161 (20%)

Query: 7   RIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTR 66
           R      KPGD I  +R   Y H  IY+GD  V+H     +  G G    +  ++     
Sbjct: 2   RAPIPEPKPGDLIEIFRP-FYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDK--- 57

Query: 67  LPTPCPTCASNEVGHGVVLSCLNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPD 126
                           +V   L   ++G + Y+                         P 
Sbjct: 58  ---------------AIVKKELLYDVAGSDKYQ-------------VNNKHDDKYSPLPC 89

Query: 127 DVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQ 167
             +I RA+ L+      Y +   NCE F    + G+   DQ
Sbjct: 90  SKIIQRAEELV-GQEVLYKLTSENCEHFVNELRYGVARSDQ 129

>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A Length = 235

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 7   RIDKESLKPGDHIYSWRAYVYAHH-GIYIGDDKVIHFTRQGQEVGTGTVIDVL 58
            I  + L PGD ++ +   V A H G+Y+GD   IH + + Q    G  ID+L
Sbjct: 155 AITIDELAPGDLVF-FGTPVKATHVGLYLGDGCYIHSSGKAQGR-DGIGIDIL 205

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} Length = 311

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 7   RIDKESLKPGD----HIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEV 49
            +DKE L+ GD         +  V+ H  +YIGD  +IH  R  + V
Sbjct: 244 AVDKEHLQKGDLIFFAHDQGKGSVH-HVAMYIGDGNMIHSPRAERSV 289

>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A* Length = 214

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   RIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTV 54
           +I    ++ GD I+ +      H  IY+G+ +++     G +V    V
Sbjct: 153 KIPSSQMRRGDVIF-YGPNGSQHVTIYLGNGQMLEAPDVGLKVRVAPV 199

>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A Length = 214

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 7   RIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTV 54
            +     K GD I+ +      H  +Y+G+ +++  +    +V    V
Sbjct: 153 HVPPAEAKRGDLIF-YGPGGGQHVTLYLGNGQMLEASGSAGKVTVSPV 199

>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp} Length = 313

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 7   RIDKESLKPGDHIY---SWRAYVYAHH-GIYIGDDKVIH 41
            I  E  + GD I+   ++ A  Y  H  IY+  ++  H
Sbjct: 247 EISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYH 285

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
2lkt_A	125	Retinoic acid receptor responder protein 3; TIG3,	100.0
4dot_A	140	Group XVI phospholipase A2; alpha/beta fold, phosp	100.0
4dpz_X	137	HRAS-like suppressor 2; alpha/beta fold, enzyme ph	99.98
2k1g_A	135	Lipoprotein SPR; solution structure, bacterial lip	98.62
2jyx_A	136	Lipoprotein SPR; solution structure, construct opt	98.44
3pbi_A	214	Invasion protein; peptidoglycan hydrolase, extrace	98.33
3ne0_A	214	Resuscitation promoting factor interacting protei;	98.27
2hbw_A	235	NLP/P60 protein; NLP/P60 family protein, structura	98.2
3gt2_A	142	Putative uncharacterized protein; P60 domain, anti	98.18
2if6_A	186	Hypothetical protein YIIX; structural genomics, me	98.18
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	98.06
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	97.94
3kw0_A	214	Cysteine peptidase; structural genomics, joint cen	97.86
4hpe_A	308	Putative cell WALL hydrolase TN916-like,CTN1-ORF1;	97.78
4fdy_A	313	Similar to lipoprotein, NLP/P60 family; SLT/lysozy	97.77
2wp7_A	168	PPPDE peptidase domain-containing protein 2; hydro	95.68
3m1u_A	434	Putative gamma-D-glutamyl-L-diamino acid endopept;	93.04
2p1g_A	249	Putative xylanase; structural genomics, unknown fu	82.03

>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}

Probab=100.00  E-value=6.8e-36  Score=241.59  Aligned_cols=122  Identities=26%  Similarity=0.353  Sum_probs=91.0

Q ss_pred             cCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEee
Q 025306            8 IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSC   87 (255)
Q Consensus         8 v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~   87 (255)
                      .+..+|||||||+++|. .|+|||||+|||+|||++++.+....+..+                 ..+.......|.+++
T Consensus         3 ~~~~ep~pGDlI~~~r~-~Y~H~gIYvGdg~ViH~~~~~~~~~~~~~~-----------------~~~~~~~~~~V~~~~   64 (125)
T 2lkt_A            3 SPHQEPKPGDLIEIFRL-GYEHWALYIGDGYVIHLAPPSEYPGAGSSS-----------------VFSVLSNSAEVKRER   64 (125)
T ss_dssp             SSSCCCCTTCEEEEECS-SSCEEEEEEETTEEEEEECSBCCSCCCBTT-----------------BSSCCBCCEEEEEEE
T ss_pred             CCCCCCCCCCEEEEeCC-CccEEEEEeCCCeEEEEccccccccccccc-----------------eeccccCCceEEEEE
Confidence            35689999999999994 799999999999999999865433322111                 011111224566778


Q ss_pred             ceeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCC
Q 025306           88 LNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGL  162 (255)
Q Consensus        88 L~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl  162 (255)
                      |++|+.|+..++     ++..+         ..++|+|+++||+||+++|+++ .+|||++|||||||+|||||.
T Consensus        65 l~~~~~g~~~~v-----~~~~d---------~~~~p~~~~~iv~rA~~~lg~~-~~Y~l~~nNCEHFa~~cryG~  124 (125)
T 2lkt_A           65 LEDVVGGCCYRV-----NNSLD---------HEYQPRPVEVIISSAKEMVGQK-MKYSIVSRNCEHFVTQLRYGK  124 (125)
T ss_dssp             HHHHHTTCEEEE-----CCHHH---------HHTCCCCHHHHHHHHHHHTTCE-ECSSCHHHHHHHHHHHHHCSC
T ss_pred             HHHhcCCCeEEE-----EEccC---------CCcCCCCHHHHHHHHHHHcCCC-CCcCCCccCHHHHHhhhhccC
Confidence            888876665444     33332         4568999999999999999764 489999999999999999985

>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}

Probab=100.00  E-value=7.9e-34  Score=235.68  Aligned_cols=131  Identities=27%  Similarity=0.350  Sum_probs=83.8

Q ss_pred             cCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEee
Q 025306            8 IDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSC   87 (255)
Q Consensus         8 v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~   87 (255)
                      .++.+++|||+|+++++ .|.|||||+|+|+|||++++++....++.+    ..+....             ...|..+.
T Consensus         3 ~~~~~~~pGDlv~~~~~-~~~H~gIYvG~g~viH~~~~~~~~~~~~~~----~~s~~~~-------------~a~V~~~~   64 (140)
T 4dot_A            3 APIPEPKPGDLIEIFRP-FYRHWAIYVGDGYVVHLAPPSEVAGAGAAS----VMSALTD-------------KAIVKKEL   64 (140)
T ss_dssp             ---CCCCTTCEEEEEET-TEEEEEEEEETTEEEEEECC-----------------------------------CEEEEEE
T ss_pred             ccccCCCCCCEEEEeCC-CCCEEEEEeCCCeEEecCCCcccccccccc----ceecccC-------------CceEEEEE
Confidence            46789999999999984 699999999999999999976543322211    0111111             12344556


Q ss_pred             ceeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCCeeccC
Q 025306           88 LNCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQ  167 (255)
Q Consensus        88 L~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl~~~~~  167 (255)
                      |++|+.| ..|++    +|.++         ..++|+|+++||+||+++|++ +.+|||++|||||||+||+||.     
T Consensus        65 L~d~~~g-~~~~V----nn~~D---------~~y~p~~~~~iv~rA~~~lG~-e~~Y~ll~nNCEHFvt~cr~G~-----  124 (140)
T 4dot_A           65 LYDVAGS-DKYQV----NNKHD---------DKYSPLPCSKIIQRAEELVGQ-EVLYKLTSENCEHFVNELRYGV-----  124 (140)
T ss_dssp             HHHHHTT-SEEEE----CCGGG---------GTSCCCCHHHHHHHHHHTTTC-BCSSCCCHHHHHHHHHHHHHCC-----
T ss_pred             HHHhcCC-CeEEE----EeccC---------CCcCCCCHHHHHHHHHHHcCC-cccccccccChHHHHHHHhcCC-----
Confidence            6666544 45553    55554         246799999999999999965 4799999999999999998776     


Q ss_pred             CCccchhhhHHH
Q 025306          168 GTMGQSGQAVSI  179 (255)
Q Consensus       168 ~g~~~SgQa~~~  179 (255)
                         .+|.|+..+
T Consensus       125 ---~~S~Qv~~~  133 (140)
T 4dot_A          125 ---ARSDQVRDL  133 (140)
T ss_dssp             ---C--------
T ss_pred             ---cccchhhhh
Confidence               589998764

>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A

Probab=99.98  E-value=8.6e-33  Score=228.71  Aligned_cols=128  Identities=28%  Similarity=0.368  Sum_probs=82.1

Q ss_pred             CCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceeeeeeeeeeeeeecCCCCCCCCCCCCCCCCcccceEEeec
Q 025306            9 DKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVGTGTVIDVLLVSSGTTRLPTPCPTCASNEVGHGVVLSCL   88 (255)
Q Consensus         9 ~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~~~s~~d~~~~ss~~~~~~~~c~~c~~~~~~~gVv~~~L   88 (255)
                      .+.+++|||+|+++++ .|.|||||+|||+|||++++++....++.+    ..+..+.             ...|..+.|
T Consensus         4 ~~~~~~pGDlv~~~~~-~~~H~gIYvG~g~viH~~~~~~~~~~~~~~----~~s~~~~-------------~a~V~~~~L   65 (137)
T 4dpz_X            4 ARPRPRLGDLIEISRF-GYAHWAIYVGDGYVVHLAPASEIAGAGAAS----VLSALTN-------------KAIVKKELL   65 (137)
T ss_dssp             CCCCCCTTCEEEEECS-SSEEEEEEEETTEEEEEEECC----------------TTCC-------------CEEEEEEEH
T ss_pred             ccccCCCCCEEEEeCC-CCCEEEEEeCCCeEEeccCccccccccccc----ceecccC-------------CceEEEEEH
Confidence            4689999999999984 789999999999999999876544322211    1111111             123445566


Q ss_pred             eeeeeCCeEEEEecCCChhhhhcccCCCceecccCCChHHHHHHHHHhhhcccccccccccchHHHHHHHhhCCeeccCC
Q 025306           89 NCFLSGGNLYRFEYGVSPALFLGKARGGTCTLAVADPDDVVIHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVVDQG  168 (255)
Q Consensus        89 ~~Fl~G~~l~~~~Y~v~~~~flak~r~gtc~~~~~~p~eeVV~RA~~~L~~G~~~Ynl~~NNCEHFA~~CkTGl~~~~~~  168 (255)
                      ++|+ ++..|++    +|.++         ..++|+|+++|++||+++|++ +.+|||++|||||||+||+||.      
T Consensus        66 ~df~-~g~~~~V----nN~~D---------~~~~p~~~~~iv~rA~~~lG~-~~~Y~ll~nNCEHFvt~cryG~------  124 (137)
T 4dpz_X           66 SVVA-GGDNYRV----NNKHD---------DRYTPLPSNKIVKRAEELVGQ-ELPYSLTSDNCEHFVNHLRYGV------  124 (137)
T ss_dssp             HHHH-TTSCEEE----CCTTT---------TTSCCCCHHHHHHHHHHHTTC-EEC-----CHHHHHHHHHHHSC------
T ss_pred             HHhc-CCCeEEE----EecCC---------CccCCCCHHHHHHHHHHHcCC-CcccCcCccChHHHHHHHhcCC------
Confidence            6665 4456554    45443         235799999999999999965 3699999999999999998876      


Q ss_pred             CccchhhhH
Q 025306          169 TMGQSGQAV  177 (255)
Q Consensus       169 g~~~SgQa~  177 (255)
                        .+|.|.+
T Consensus       125 --~~S~~~~  131 (137)
T 4dpz_X          125 --SRSDQLE  131 (137)
T ss_dssp             --CCC----
T ss_pred             --chhcchh
Confidence              5777765

>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}

Probab=98.62  E-value=2.7e-08  Score=81.58  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=37.1

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCC
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQG   46 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g   46 (255)
                      .+++|+.++++|||+|+|..+....|+|||+|+|++||++.++
T Consensus        59 ~g~~V~~~~l~pGDLvFf~~~~~~~HVGIyiG~g~~IHA~~~~  101 (135)
T 2k1g_A           59 MGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSS  101 (135)
T ss_dssp             GSEEECGGGCCTTEEEEEEETTTEEEEEEEEETTEEEEEETTT
T ss_pred             CCcEecHHHccCCcEEEECCCCCCeEEEEEecCCEEEEECCCC
Confidence            4678999999999999997644568999999999999998744

>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A

Probab=98.33  E-value=4.8e-07  Score=79.41  Aligned_cols=46  Identities=17%  Similarity=0.297  Sum_probs=38.5

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceee
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVG   50 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~   50 (255)
                      .+++|+.++++|||+|+|..+ ...|+|||+|+|++||....+..+.
T Consensus       150 ~g~~V~~~~lqpGDLVff~~g-~~~HVgIYlG~g~~IHA~~~~~~V~  195 (214)
T 3pbi_A          150 AGRHVPPAEAKRGDLIFYGPG-GGQHVTLYLGNGQMLEASGSAGKVT  195 (214)
T ss_dssp             SSEEECGGGCCTTCEEEESGG-GCSEEEEEEETTEEEEEETTTTEEE
T ss_pred             cCeeechhhCCCCCEEEecCC-CCCEEEEEecCCEEEEECCCCCcEE
Confidence            457889999999999998653 4689999999999999998765444

>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*

Probab=98.27  E-value=5.4e-07  Score=79.13  Aligned_cols=46  Identities=24%  Similarity=0.429  Sum_probs=38.0

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCceee
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQEVG   50 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~~~~   50 (255)
                      .+++|+.++++|||+|+|..+ ...|+|||+|+|++||.+.++..+.
T Consensus       150 ~g~~V~~~~lqpGDLvFf~~g-~~~HVgIYlG~g~~IHA~~~g~~V~  195 (214)
T 3ne0_A          150 LGRKIPSSQMRRGDVIFYGPN-GSQHVTIYLGNGQMLEAPDVGLKVR  195 (214)
T ss_dssp             SSEEEEGGGCCTTCEEEESGG-GCSEEEEEEETTEEEECCSTTCBSE
T ss_pred             cCceechhhCCCCCEEEecCC-CCCEEEEEeCCCEEEEeCCCCCcEE
Confidence            356788899999999998653 4689999999999999987665443

>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A

Probab=98.20  E-value=1.4e-06  Score=77.25  Aligned_cols=42  Identities=29%  Similarity=0.531  Sum_probs=36.3

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCC
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQ   45 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~   45 (255)
                      .+++|+.++++|||+|+|.......|+|||+|+|++||.+.+
T Consensus       152 ~g~~v~~~~l~pGDLvff~~~~~~~HVgIy~G~g~~IHa~~~  193 (235)
T 2hbw_A          152 FTQAITIDELAPGDLVFFGTPVKATHVGLYLGDGCYIHSSGK  193 (235)
T ss_dssp             HSEEECGGGCCTTCEEEEECSSCEEEEEEEEETTEEEEEECT
T ss_pred             hCccccHhhCCCCCEEEECCCCCCCEEEEEeCCCEEEEECCC
Confidence            356788899999999999864457899999999999999975

>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}

Probab=98.18  E-value=1e-06  Score=72.10  Aligned_cols=38  Identities=16%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEe
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHF   42 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~   42 (255)
                      .+.+|+.++++|||+|+|... ...|+|||+|++++||.
T Consensus        81 ~g~~v~~~~~~pGDlvff~~~-~~~HVgIy~G~g~~iha  118 (142)
T 3gt2_A           81 VGQKILPQQARKGDLIFYGPE-GTQSVAMYLGNNQMLEV  118 (142)
T ss_dssp             SSEEECGGGCCTTCEEEESGG-GCSEEEEEEETTEEEEE
T ss_pred             hCceechhhCCCCCEEEeCCC-CCCEEEEEecCCEEEeC
Confidence            456788999999999998653 36899999999999994

>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21

Probab=98.18  E-value=6.6e-06  Score=69.58  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             CCCCCCCCCEEEEecC------------CCCceEEEEEc-CCe--EEEeeC
Q 025306            9 DKESLKPGDHIYSWRA------------YVYAHHGIYIG-DDK--VIHFTR   44 (255)
Q Consensus         9 ~~~~lkpGD~I~~~r~------------~~y~H~GIYvG-dg~--VIH~~~   44 (255)
                      +..+++|||+|++...            ..|.|.|||+| +++  |+|+.+
T Consensus         1 ~~~~l~~GDlvf~~~~~~~s~~I~~~t~~~~sHvgI~~~~~~~~~viea~~   51 (186)
T 2if6_A            1 SLWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVG   51 (186)
T ss_dssp             --CCCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEESS
T ss_pred             CcccCCCCCEEEEEcCCchHHHHHHHcCCCCceEEEEEEeCCcEEEEEeCC
Confidence            3578999999999642            25899999999 555  999984

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=98.06  E-value=2.9e-06  Score=77.49  Aligned_cols=46  Identities=35%  Similarity=0.494  Sum_probs=37.6

Q ss_pred             CCcccCCCCCCCCCEEEEec---CCCCceEEEEEcCCeEEEeeCCCcee
Q 025306            4 LSNRIDKESLKPGDHIYSWR---AYVYAHHGIYIGDDKVIHFTRQGQEV   49 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r---~~~y~H~GIYvGdg~VIH~~~~g~~~   49 (255)
                      .+.+|+..+++|||+|+|..   .....|+|||+|+|++||.+.++..+
T Consensus       241 ~g~~v~~~~~~pGDlvff~~~~~~~~~~HVgiy~G~g~~iha~~~~~~V  289 (311)
T 3h41_A          241 NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAERSV  289 (311)
T ss_dssp             SSEEECGGGCCTTCEEEEEHHHHTSCEEEEEEEEETTEEEECCCTTSBS
T ss_pred             CCEEEcHHHCCCCCEEEEecCCCCCCCcEEEEEEeCCEEEEECCCCCCE
Confidence            46788899999999999974   12467999999999999998755444

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=97.94  E-value=7.1e-06  Score=74.29  Aligned_cols=41  Identities=32%  Similarity=0.541  Sum_probs=33.3

Q ss_pred             CCcccCC----CCCCCCCEEEEec------CCCCceEEEEEcCCeEEEeeC
Q 025306            4 LSNRIDK----ESLKPGDHIYSWR------AYVYAHHGIYIGDDKVIHFTR   44 (255)
Q Consensus         4 ~~~~v~~----~~lkpGD~I~~~r------~~~y~H~GIYvGdg~VIH~~~   44 (255)
                      .+..++.    ++++|||+|+|..      +....|+|||+|+|++||++.
T Consensus       208 ~g~~v~~~~~~~~~~pGDLvff~~~~~~~~~~~~~Hvgiy~g~~~~iha~~  258 (306)
T 3npf_A          208 VGEHIDIAPDFSNVKRGDLVFFGRKATAERKEGISHVGIYLGNKQFIHALG  258 (306)
T ss_dssp             SSEEECCCTTCTTCCTTCEEEEEECCCSSSCCEEEEEEEEEETTEEEEESS
T ss_pred             CCcEecccCccccCCCccEEEECCCCccCCCCCCeEEEEEECCCEEEEcCC
Confidence            3455654    8999999999975      234679999999999999985

>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}

Probab=97.86  E-value=4.8e-05  Score=66.27  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             CCCCCCCCEEEEecC------------CCCceEEEEEcCCe---EEEeeC
Q 025306           10 KESLKPGDHIYSWRA------------YVYAHHGIYIGDDK---VIHFTR   44 (255)
Q Consensus        10 ~~~lkpGD~I~~~r~------------~~y~H~GIYvGdg~---VIH~~~   44 (255)
                      +.+++|||+|++...            ..|+|.|||+|++.   |||+..
T Consensus        37 ~~~l~~GDlif~~~~~~~s~~I~~~T~s~~sHvgI~~~~~~~~~vieA~~   86 (214)
T 3kw0_A           37 INVLKTGDIFLCSGNYLVSKLIKKVSESMFSHTGIIVKWGEHTLIMESVE   86 (214)
T ss_dssp             TTTCCTTCEEEEEECSHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEET
T ss_pred             HhhCCCCCEEEEeCCCcHHHHHHHhcCCCCcEEEEEEecCCceEEEEecC
Confidence            578999999999631            36899999999886   899975

>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}

Probab=97.78  E-value=1.3e-05  Score=73.50  Aligned_cols=38  Identities=24%  Similarity=0.517  Sum_probs=32.7

Q ss_pred             CcccCCCCCCCCCEEEEec----CCCCceEEEEEcCCeEEEe
Q 025306            5 SNRIDKESLKPGDHIYSWR----AYVYAHHGIYIGDDKVIHF   42 (255)
Q Consensus         5 ~~~v~~~~lkpGD~I~~~r----~~~y~H~GIYvGdg~VIH~   42 (255)
                      +.+|+.++++|||+|+|..    +....|+|||+|+|++||.
T Consensus       241 g~~v~~~~l~pGDLvff~~~~~~~~~~~HVgIy~G~g~~iha  282 (308)
T 4hpe_A          241 TQHLPLSQAKAGDLVFFHSTYNAGSYVTHVGIYVGNNQMYHA  282 (308)
T ss_dssp             SEEECGGGCCTTCEEEEECSSSCSSSEEEEEEECSTTEEEEC
T ss_pred             CeeechhhCCCCCEEEEcCCCCCCCCccEEEEEEcCCEEEEe
Confidence            5678899999999999964    2236799999999999999

>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}

Probab=97.77  E-value=1.8e-05  Score=72.89  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CcccCCCCCCCCCEEEEec----CCCCceEEEEEcCCeEEEe
Q 025306            5 SNRIDKESLKPGDHIYSWR----AYVYAHHGIYIGDDKVIHF   42 (255)
Q Consensus         5 ~~~v~~~~lkpGD~I~~~r----~~~y~H~GIYvGdg~VIH~   42 (255)
                      +.+|+..+++|||+|+|..    +....|+|||+|+|++||.
T Consensus       245 g~~V~~~~lqpGDLvff~~~~~~g~~~~HVGIYlG~g~~IHA  286 (313)
T 4fdy_A          245 TQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHA  286 (313)
T ss_dssp             SEEECTTTCCTTCEEEESSSSCCSSSCCEEEEEEETTEEEES
T ss_pred             CceechhhCCCCCEEEEecCCCCCCCCcEEEEEecCCEEEEe
Confidence            5678899999999999963    2236799999999999999

>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A

Probab=95.68  E-value=0.0072  Score=51.11  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=22.9

Q ss_pred             CChHHHHHHHHHhhhcc-c--ccccccccchHHHHHHHh
Q 025306          124 DPDDVVIHRAKYLLENG-F--GCYNVFKNNCEDFAIYCK  159 (255)
Q Consensus       124 ~p~eeVV~RA~~~L~~G-~--~~Ynl~~NNCEHFA~~Ck  159 (255)
                      .+.+++ ++....|+.. |  ..|||+.+||-||+...-
T Consensus        79 ~~~~~~-~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~  116 (168)
T 2wp7_A           79 VTEEIF-LEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA  116 (168)
T ss_dssp             CCHHHH-HHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHH
T ss_pred             CCHHHH-HHHHHHhhhccCCcccCchhhhccchhHHHHH
Confidence            355554 3333333332 3  599999999999998764

>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}

Probab=93.04  E-value=0.0087  Score=57.29  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             CCcccCCCCCCCCC--------EEEEec-CCCCceEEEEEcCC----eEEEeeC
Q 025306            4 LSNRIDKESLKPGD--------HIYSWR-AYVYAHHGIYIGDD----KVIHFTR   44 (255)
Q Consensus         4 ~~~~v~~~~lkpGD--------~I~~~r-~~~y~H~GIYvGdg----~VIH~~~   44 (255)
                      .|..|+.++++|||        +++|.. .+...|+|||+|++    .+||...
T Consensus       328 ~g~~v~~~~l~pGD~~~~i~~~lvfF~~~~~~~gHVgIYiG~~~g~~~~ih~~~  381 (434)
T 3m1u_A          328 AGRYVDIAKLDADDKEARIVAEGVPFMTLLWLRGHITLYLGLHEGQAAMFHNMW  381 (434)
T ss_dssp             TSEEEECTTSCHHHHHHHHHHHCCTTSEEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred             cCeecCHHHCCCCcccccccccccccccCCCCCCeEEEEecCCCCcEEEEEeCC
Confidence            46788999999999        666533 12235999999975    5788864

>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}

Probab=82.03  E-value=1.9  Score=38.42  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             CCCCCCCEEEEec---CCCCceEEEEEc-CC--eEEEeeCCC
Q 025306           11 ESLKPGDHIYSWR---AYVYAHHGIYIG-DD--KVIHFTRQG   46 (255)
Q Consensus        11 ~~lkpGD~I~~~r---~~~y~H~GIYvG-dg--~VIH~~~~g   46 (255)
                      .+++.||+|.+-.   +.-.+|.||++- +|  .++|++...
T Consensus       170 ~~l~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~f~hASs~~  211 (249)
T 2p1g_A          170 PWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKE  211 (249)
T ss_dssp             TTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTT
T ss_pred             hcCCCCCEEEEEeCCCCCceeEEEEEEEECCeEEEEEcCCCC
Confidence            6799999999976   444689999994 33  568888744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d2evra2	148	Cell wall-associated hydrolase Spr C-terminal doma	98.45
d2if6a1	182	Hypothetical protein YiiX {Escherichia coli [TaxId	96.99

>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: NlpC/P60
domain: Cell wall-associated hydrolase Spr C-terminal domain
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.45  E-value=6.6e-08  Score=78.34  Aligned_cols=44  Identities=25%  Similarity=0.401  Sum_probs=37.4

Q ss_pred             CCcccCCCCCCCCCEEEEecCCCCceEEEEEcCCeEEEeeCCCc
Q 025306            4 LSNRIDKESLKPGDHIYSWRAYVYAHHGIYIGDDKVIHFTRQGQ   47 (255)
Q Consensus         4 ~~~~v~~~~lkpGD~I~~~r~~~y~H~GIYvGdg~VIH~~~~g~   47 (255)
                      .+++|+.++++|||+|||.......|+|||+|||++||+++++.
T Consensus        65 ~g~~V~~~~l~pGDLvFf~~~~~~~HVgIyiG~g~~iha~~~~~  108 (148)
T d2evra2          65 FTQPITIAELVAGDLVFFGTSQKATHVGLYLADGYYIHSSGKDQ  108 (148)
T ss_dssp             HSEEECGGGCCTTCEEEEECSSCEEEEEEECSTTEEEEEECTTT
T ss_pred             hcCcccccccCcceeEEecCCCCCCEeEEEecCCEEEEeCCCCC
Confidence            46789999999999999976334679999999999999998553

>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: YiiX-like
domain: Hypothetical protein YiiX
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00068  Score=54.44  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             CCCCCCEEEEecC------------CCCceEEEEEcC
Q 025306           12 SLKPGDHIYSWRA------------YVYAHHGIYIGD   36 (255)
Q Consensus        12 ~lkpGD~I~~~r~------------~~y~H~GIYvGd   36 (255)
                      ++|+||+|++...            ..|+|.||+++.
T Consensus         2 q~q~GDIlf~~~~s~~s~aI~~~T~s~~sHvgIv~~~   38 (182)
T d2if6a1           2 QPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMR   38 (182)
T ss_dssp             CCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEE
T ss_pred             CCCCccEEEEeCCCcHHHHHHHHhCCCCceEEEEEEe
Confidence            7899999999542            258999999984