Citrus Sinensis ID: 025324

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKAMVNSPSNKSPIEQNNRQKPLASYSPTTKSAFQQKNQNRNNKVPSGNTETPSRLKNNSFIIENDDFPPLGSSNSGNRARFTRAGSRQL
cccccEEEccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccEEEEEcccccEEEEcccccccccccccccEEEEEccccEEEEccccccEEEEEcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccccEEEEEEEccEEEEEccEEEEcccccccccEEEEccccEEEEEEccHHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccc
mqfgccynysadkdgnppgiirdeevdplppmFKQMIKRMVRwhilpptcipnscivniydegdcipphidhhdflrpfctvsfltecnilfgsslkivgpgefsgpisiplpvgsvlilngngadvakhcvpavptkrisitfrkmddsklpykfspdpelmgikamvnspsnkspieqnnrqkplasyspttksAFQQKnqnrnnkvpsgntetpsrlknnsfiienddfpplgssnsgnrarftragsrql
mqfgccynysadkdgnppgiIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGAdvakhcvpavptkrisitfrkmddsklpykfsPDPELMGIKAMVNSPSNKSPIEQNNRQKPLASYSPTTKSafqqknqnrnnkvpsgntetpsrlKNNSFIIENDdfpplgssnsgnrarftragsrql
MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKAMVNSPSNKSPIEQNNRQKPLASYSPTTKSAFQQKNQNRNNKVPSGNTETPSRLKNNSFIIENDDFPPLGSSNSGNRARFTRAGSRQL
***GCCYNYS******************LPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRK************************************************************************************************************
MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLK******FSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDD*********************************************************************************************************
MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKAMVNSPSNKSPIEQNNRQKPLASY***************************SRLKNNSFIIENDDFPPLGSSNSGNRARFTRAGSRQL
MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKA***************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKAMVNSPSNKSPIEQNNRQKPLASYSPTTKSAFQQKNQNRNNKVPSGNTETPSRLKNNSFIIENDDFPPLGSSNSGNRARFTRAGSRQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
D3ZKD3395 RNA demethylase ALKBH5 OS yes no 0.562 0.362 0.331 9e-14
Q66JG8358 RNA demethylase ALKBH5 OS yes no 0.562 0.399 0.324 1e-13
Q6P6C2394 RNA demethylase ALKBH5 OS yes no 0.562 0.362 0.331 1e-13
Q3TSG4395 RNA demethylase ALKBH5 OS yes no 0.562 0.362 0.331 1e-13
E1BH29394 RNA demethylase ALKBH5 OS yes no 0.562 0.362 0.331 1e-13
Q6GPB5360 RNA demethylase ALKBH5 OS N/A no 0.559 0.394 0.335 2e-13
Q08BA6352 RNA demethylase ALKBH5 OS yes no 0.562 0.406 0.324 7e-13
>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1 Back     alignment and function desciption
 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIRDE---EVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A      PG  R     +VD +P    Q++ + +  H + P    NS ++N 
Sbjct: 136 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVIND 195

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+ S+P+  GSV
Sbjct: 196 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVLSLPVRRGSV 254

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  I  RK
Sbjct: 255 TVLSGYAADEITHCIRPQDIKERRAVIILRK 285
Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron. Demethylation of m(6)A mRNA affects mRNA processing and export and is required for spermatogenesis.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1 Back     alignment and function description
>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2 Back     alignment and function description
>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2 Back     alignment and function description
>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1 Back     alignment and function description
>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1 Back     alignment and function description
>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
225447996 457 PREDICTED: uncharacterized protein LOC10 0.889 0.494 0.643 3e-91
298204538 439 unnamed protein product [Vitis vinifera] 0.889 0.514 0.643 3e-91
356525956 423 PREDICTED: uncharacterized protein LOC10 0.716 0.430 0.769 4e-83
343172812261 2-oxoglutarate (2OG) and Fe(II)-dependen 0.661 0.643 0.815 1e-82
148906930 496 unknown [Picea sitchensis] 0.870 0.445 0.621 3e-82
449434166 499 PREDICTED: uncharacterized protein LOC10 0.736 0.374 0.712 9e-80
297798302 490 oxidoreductase [Arabidopsis lyrata subsp 0.842 0.436 0.644 5e-79
79326344 520 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.842 0.411 0.617 4e-78
79326336 452 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.842 0.473 0.617 5e-78
357445523 497 Alkylated DNA repair protein alkB-like p 0.688 0.352 0.748 8e-78
>gi|225447996|ref|XP_002270229.1| PREDICTED: uncharacterized protein LOC100256702 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  340 bits (873), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/255 (64%), Positives = 194/255 (76%), Gaps = 29/255 (11%)

Query: 1   MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIY 60
           +QFGCCYNY+ DK+GNPPGIIR+EEVDPLPP+FKQMIKRMVRWHILPPTC+PNSCIVNIY
Sbjct: 230 IQFGCCYNYAVDKNGNPPGIIREEEVDPLPPLFKQMIKRMVRWHILPPTCVPNSCIVNIY 289

Query: 61  DEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLIL 120
           DEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKI+  GEFSGP+SI LP GSVLIL
Sbjct: 290 DEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKILDAGEFSGPVSISLPKGSVLIL 349

Query: 121 NGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKAMVNSPSNKSPIEQ 180
           NGNGADVAKHCVPAVP KRISITFRKMD+S+LPYK+SPD EL+ ++ + + P   +P++Q
Sbjct: 350 NGNGADVAKHCVPAVPAKRISITFRKMDESRLPYKYSPDRELLNVRPLAHRPLINTPLQQ 409

Query: 181 NNRQKPLASYSPTTKSAFQQKNQ--NRNNKVPSGNTETPSRLKNNSFIIENDDFPPLGSS 238
                              QKN      +++   ++ +P         ++ DDFPPLG+ 
Sbjct: 410 -------------------QKNTVIRHESRISQQSSSSPH--------LDKDDFPPLGAW 442

Query: 239 NSGNRARFTRAGSRQ 253
            S +R R  + G RQ
Sbjct: 443 KSDSRKRGNKNGLRQ 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|298204538|emb|CBI23813.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356525956|ref|XP_003531587.1| PREDICTED: uncharacterized protein LOC100306211 [Glycine max] Back     alignment and taxonomy information
>gi|343172812|gb|AEL99109.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein, partial [Silene latifolia] gi|343172814|gb|AEL99110.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|148906930|gb|ABR16610.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|449434166|ref|XP_004134867.1| PREDICTED: uncharacterized protein LOC101203292 [Cucumis sativus] gi|449531418|ref|XP_004172683.1| PREDICTED: uncharacterized protein LOC101225118 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297798302|ref|XP_002867035.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312871|gb|EFH43294.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79326344|ref|NP_001031794.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|55819794|gb|AAV66092.1| At4g36090 [Arabidopsis thaliana] gi|59958356|gb|AAX12888.1| At4g36090 [Arabidopsis thaliana] gi|332661217|gb|AEE86617.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79326336|ref|NP_001031793.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|51971445|dbj|BAD44387.1| hypothetical protein [Arabidopsis thaliana] gi|332661216|gb|AEE86616.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357445523|ref|XP_003593039.1| Alkylated DNA repair protein alkB-like protein [Medicago truncatula] gi|124360274|gb|ABN08287.1| 2OG-Fe(II) oxygenase [Medicago truncatula] gi|355482087|gb|AES63290.1| Alkylated DNA repair protein alkB-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2060964507 AT2G17970 [Arabidopsis thalian 0.661 0.331 0.75 2.9e-76
TAIR|locus:2135124520 AT4G36090 [Arabidopsis thalian 0.803 0.392 0.641 3.5e-75
TAIR|locus:2028486331 AT1G48980 [Arabidopsis thalian 0.661 0.507 0.710 2.7e-68
TAIR|locus:2066385438 AT2G48080 [Arabidopsis thalian 0.531 0.308 0.350 1.5e-19
TAIR|locus:2139345569 AT4G02940 [Arabidopsis thalian 0.610 0.272 0.295 4e-18
TAIR|locus:2006717601 AT1G14710 "AT1G14710" [Arabido 0.484 0.204 0.349 1.9e-16
UNIPROTKB|Q6P6C2394 ALKBH5 "RNA demethylase ALKBH5 0.862 0.555 0.3 2.9e-16
UNIPROTKB|E2RPR0434 ALKBH5 "Uncharacterized protei 0.862 0.504 0.3 3.1e-16
UNIPROTKB|E1BH29394 ALKBH5 "RNA demethylase ALKBH5 0.696 0.449 0.324 1.3e-15
MGI|MGI:2144489395 Alkbh5 "alkB, alkylation repai 0.850 0.546 0.296 1.7e-15
TAIR|locus:2060964 AT2G17970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 750 (269.1 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
 Identities = 126/168 (75%), Positives = 155/168 (92%)

Query:     1 MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIY 60
             +QFGCCYNY+ D+ GNPPGI++ EEVDPLP +FK +I+++++WH+LPPTC+P+SCIVNIY
Sbjct:   267 IQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKWHVLPPTCVPDSCIVNIY 326

Query:    61 DEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLIL 120
             DEGDCIPPHID+HDFLRPFCT+SFL+EC+ILFGS+LK+ GPG+FSG  SIPLPVGSVL+L
Sbjct:   327 DEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGDFSGSYSIPLPVGSVLVL 386

Query:   121 NGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPELMGIKAM 168
             NGNGADVAKHCVPAVPTKRISITFRKMD+SK P  F+P+P+L GI+ +
Sbjct:   387 NGNGADVAKHCVPAVPTKRISITFRKMDESKRPVWFTPEPDLQGIEPL 434
GO:0005634 "nucleus" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2135124 AT4G36090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028486 AT1G48980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066385 AT2G48080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139345 AT4G02940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006717 AT1G14710 "AT1G14710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6C2 ALKBH5 "RNA demethylase ALKBH5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPR0 ALKBH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH29 ALKBH5 "RNA demethylase ALKBH5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2144489 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026522001
SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (285 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 2e-28
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-07
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 6e-04
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score =  106 bits (267), Expect = 2e-28
 Identities = 42/152 (27%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 4   GCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEG 63
           G  Y YS             E   P P +  Q+ +R+      P    PN+C+VN Y  G
Sbjct: 54  GPGYRYSGTPV-------TGEPWPPFPAVLLQLAERLAAAAGPPG-FEPNACLVNFYRPG 105

Query: 64  DCIPPHIDHH--DFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILN 121
             +  H D    DF  P  +VS        FG      G       I++PL  G VL++ 
Sbjct: 106 ARMGLHQDKDELDFGAPIVSVSLGDPALFRFG------GKTRDDPTIALPLESGDVLVMG 159

Query: 122 GNGADVAKHCVPAVPTK--------RISITFR 145
           G       H VP +           RI++TFR
Sbjct: 160 GPSRLAY-HGVPRIKPGTHPLLGGGRINLTFR 190

Length = 190
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.96
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 99.96
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 99.95
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.92
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.85
KOG3200224 consensus Uncharacterized conserved protein [Funct 99.84
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 99.59
KOG2731378 consensus DNA alkylation damage repair protein [RN 98.61
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.8
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 96.97
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.5
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 95.63
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.49
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 94.55
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.13
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 93.14
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 91.68
TIGR02466201 conserved hypothetical protein. This family consis 90.13
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 82.82
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=99.96  E-value=1.3e-29  Score=236.15  Aligned_cols=150  Identities=43%  Similarity=0.872  Sum_probs=141.8

Q ss_pred             CccCceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCCCEE
Q 025324            1 MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFC   80 (254)
Q Consensus         1 ~~fG~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~f~~pIv   80 (254)
                      +|||+.|+|.++.+++.++      .++||..++.++++|+.+.++++  .||+|+||+|++|++|.+|+|+++|++||+
T Consensus       166 iq~G~~f~y~~~~~d~~~~------~~piPs~~~~ii~rlv~~~~ip~--~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~  237 (323)
T KOG4176|consen  166 IQLGYPFDYRTNNVDESKP------VDPIPSLFKSIIDRLVSWRVIPE--RPDQCTINFYEPGDGIPPHIDHSAFLDPIS  237 (323)
T ss_pred             eecCceeccCCCcccccCc------cCCCchHHHHHHHHhhhhccCCC--CCCeeEEEeeCCCCCCCCCCChHHhcCceE
Confidence            6999999999997766544      68999999999999999999998  799999999999999999999999999999


Q ss_pred             EEcCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCCCCCcEEEEEecccCCCCCCCCCC
Q 025324           81 TVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSP  158 (254)
Q Consensus        81 sLSLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r~~RISLTFR~~~~~~~p~~~~~  158 (254)
                      +|||.++|+|.|++....+..+.+.+...++|+.|++++|.|.+.+..+|+++..+++|||||||++++.+++++|.|
T Consensus       238 slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~~~~~~~~  315 (323)
T KOG4176|consen  238 SLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDPCFCEPPP  315 (323)
T ss_pred             EEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCCCCCCCCC
Confidence            999999999999999877777888888999999999999999999999999999999999999999999999999999

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 7e-22
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 1e-18
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 3e-10
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 8e-09
3lfm_A495 Protein FTO; FAT MASS and obesity associated (FTO) 4e-04
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
 Score = 89.3 bits (221), Expect = 7e-22
 Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 26/162 (16%)

Query: 4   GCCYNYSA-DKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDE 62
              Y YS  D   N P          +P  F  + +R       P    P++C++N Y  
Sbjct: 63  RQGYLYSPIDPQTNKP-------WPAMPQSFHNLCQRAATAAGYPD-FQPDACLINRYAP 114

Query: 63  GDCIPPHIDHH--DFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLIL 120
           G  +  H D    D   P  +VS        FG      G         + L  G V++ 
Sbjct: 115 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFG------GLKRNDPLKRLLLEHGDVVVW 168

Query: 121 NGNGADVAKHCVPAV--------PTKRISITFRKMDDSKLPY 154
            G  + +  H +  +           R ++TFR+    +  Y
Sbjct: 169 GGE-SRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKENLY 209
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Length = 495 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 99.97
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 99.96
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 99.95
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 99.95
3lfm_A495 Protein FTO; FAT MASS and obesity associated (FTO) 96.52
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.19
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 89.36
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.87
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 80.73
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
Probab=99.97  E-value=8.3e-31  Score=245.05  Aligned_cols=150  Identities=22%  Similarity=0.385  Sum_probs=118.5

Q ss_pred             ccCceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCC-CCCCCEE
Q 025324            2 QFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHH-DFLRPFC   80 (254)
Q Consensus         2 ~fG~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~-~f~~pIv   80 (254)
                      +||+.|+|++.....     ....+.+||+||..|++++.+.+++  +..||+|+||+|.+|++|+||+|++ .|+++|+
T Consensus       154 ~yG~~Y~Ys~~~~~~-----~~p~p~~~P~~L~~l~~r~~~~~~~--~~~~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~  226 (345)
T 3tht_A          154 HFGYEFHYENNNVDK-----DKPLSGGLPDICESFLEKWLRKGYI--KHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIV  226 (345)
T ss_dssp             CCC-----------------------CCCHHHHHHHHHHHHHTSC--SSCCSEEEEEEECTTCCEEEECCCTTTBCSCEE
T ss_pred             EECCccccccccccc-----CCCCCcCcCHHHHHHHHHHHhcccC--CCCCCEEEEEEecCCCCEeeccCCchhcCCeEE
Confidence            799999999883210     1122467999999999998876776  4589999999999999999999986 4889999


Q ss_pred             EEcCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCC-------C------------------
Q 025324           81 TVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPA-------V------------------  135 (254)
Q Consensus        81 sLSLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~-------~------------------  135 (254)
                      +||||++|+|.|+..     .+   ..++|.|++||||||+|++|+.|+|+|++       .                  
T Consensus       227 slSLG~~~~f~f~~~-----~~---~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~  298 (345)
T 3tht_A          227 SLSLGSEIVMDFKHP-----DG---IAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTL  298 (345)
T ss_dssp             EEEESSCEEEEEECT-----TS---CEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEE
T ss_pred             EEECCCceeEEEccC-----CC---ceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCcee
Confidence            999999999999985     11   26899999999999999999999999998       1                  


Q ss_pred             --CCCcEEEEEecccCCCCCCCCCCCCcccCCC
Q 025324          136 --PTKRISITFRKMDDSKLPYKFSPDPELMGIK  166 (254)
Q Consensus       136 --r~~RISLTFR~~~~~~~p~~~~~~~~~~~~~  166 (254)
                        ++.|||||||++....|.|+|.-.||.|.-.
T Consensus       299 ~~r~~RiSlT~R~v~~~~c~C~~~~~cd~~~~~  331 (345)
T 3tht_A          299 SKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKE  331 (345)
T ss_dssp             EECCCEEEEEEECBCSSCCCCSCTTTCTTTTTT
T ss_pred             ccCCCEEEEEEEecCCCCcCCCCCCcccCCCcc
Confidence              5679999999999999999999999998633
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 8e-20
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 1e-14
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 82.4 bits (203), Expect = 8e-20
 Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 26/153 (16%)

Query: 5   CCYNYSA-DKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEG 63
             Y YS  D   N P          +P  F  + +R       P    P++C++N Y  G
Sbjct: 60  QGYLYSPIDPQTNKP-------WPAMPQSFHNLCQRAATAAGYPDFQ-PDACLINRYAPG 111

Query: 64  DCIPPHIDH--HDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILN 121
             +  H D    D   P  +VS        FG      G         + L  G V++  
Sbjct: 112 AKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFG------GLKRNDPLKRLLLEHGDVVVWG 165

Query: 122 GNGADVAKHCVPAV--------PTKRISITFRK 146
           G  + +  H +  +           R ++TFR+
Sbjct: 166 GE-SRLFYHGIQPLKAGFHPLTIDCRYNLTFRQ 197
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 99.95
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 99.94
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-28  Score=211.83  Aligned_cols=128  Identities=23%  Similarity=0.352  Sum_probs=103.2

Q ss_pred             eeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCC-C-CCCCCEEEEc
Q 025324            6 CYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDH-H-DFLRPFCTVS   83 (254)
Q Consensus         6 ~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~-~-~f~~pIvsLS   83 (254)
                      .|.|+...      ......+++||++|.+|+++++....++ .+.||+|+||+|.+|+.|++|.|+ + .|+.+|+|||
T Consensus        61 ~Yry~~~~------~~~~~~wp~iP~~l~~L~~~~~~~~~~~-~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~pIvslS  133 (200)
T d2fdia1          61 GYLYSPID------PQTNKPWPAMPQSFHNLCQRAATAAGYP-DFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVS  133 (200)
T ss_dssp             EEEEESBC------TTTSSBCCCCCHHHHHHHHHHHHHHTCT-TCCCSEEEEEEECTTCCEEEECCCCSSCTTSCEEEEE
T ss_pred             Cccccccc------CCCCCCCCCccHHHHHHHHHHHHHcCCC-ccCCCeeEEEEecCCCCccccccCCccccCCCceEEE
Confidence            56666551      1234567899999999999988754443 458999999999999999887775 3 4889999999


Q ss_pred             CCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCC--------CCCcEEEEEecc
Q 025324           84 FLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAV--------PTKRISITFRKM  147 (254)
Q Consensus        84 LGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~--------r~~RISLTFR~~  147 (254)
                      ||++|+|.|+...    ..  ...+.+.|++||||||+|++|+ |+|+|++.        ++.|||||||+.
T Consensus       134 LG~~~~f~f~~~~----~~--~~~~~~~L~~Gdllvm~G~~r~-~~H~V~~~~~~~~~~~~~~RislTfR~~  198 (200)
T d2fdia1         134 LGLPAIFQFGGLK----RN--DPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPLTIDCRYNLTFRQA  198 (200)
T ss_dssp             EESCEEEEECCSS----TT--SCCEEEEECTTCEEEECGGGGG-CCEEECCCCCCCBTTTBTCEEEEEEECC
T ss_pred             EeCCeeEEecccc----cC--CceEEEEcCCCCEEEeCcchhh-eEecCCcccCCCCCCCCCCeEEEEEEec
Confidence            9999999998752    11  2378999999999999999997 77999983        457999999985
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure