Citrus Sinensis ID: 025335

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRLIFSGISSWSHYIVL
ccEEccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccccccccccccccEEEEccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccEEEcccccccccEEEEEEEEEEEEccccccccccccEEEEEcEEEEccccccEEEEEcccccEEEEEcccccccccccEEEEccccccEEEEc
ccccccccccccHHHHHccEEEEEEccccccccccccccccccEEccccccEEEEEEccccEEEEEEcccEEEEEEcccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHccccEEEEcccccccccccccccccccEEEEcccccEEEEEEEccccEEEEEcccHHccccccEEccccccccEEEEc
memngskreenekmeECKETVVYMWgylpgtspekspilspiparlcggdswkdvcgggcgfalatsesgklitwgsaddegqsyltsgkhgetpepfplpteaSVVKAAAGWAHCVSVTeagevytwgwrecvpsakvtrdfgsagsfqkdstgkqsalpteqappsdkrageEVVKrrktssareesenpasgdefftlspclvtlnpgvkitkvaaggrHTLILSgkslesaepkrlIFSGISSWSHYIVL
memngskreenekmeECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGsfqkdstgkqsalpteqappsdkrageevvkrrktssareesenpasgdefftlsPCLVTLNPGVKITKVAAGGRHTLIlsgkslesaepkrlifsgisswshyivl
MEMNGSkreenekmeeckeTVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRLIFSGISSWSHYIVL
*****************KETVVYMWGYLPGT*****PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG***************************ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT*********************************************************FFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSL****PKRLIFSGISSWSHYIV*
*******************TVVYMWGYLPG***********IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT****************QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRLIFSGISSWSHYIVL
***************ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGS*************************************************GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRLIFSGISSWSHYIVL
*************MEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK******************************************KT*S*RE********DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRLIFSGISSWSHYIVL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRLIFSGISSWSHYIVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
Q5RCZ7 551 RCC1 and BTB domain-conta yes no 0.413 0.190 0.318 6e-06
O95199 551 RCC1 and BTB domain-conta yes no 0.413 0.190 0.318 6e-06
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.259 0.013 0.36 1e-05
Q99LJ7 551 RCC1 and BTB domain-conta yes no 0.413 0.190 0.309 2e-05
Q6P798 551 RCC1 and BTB domain-conta yes no 0.413 0.190 0.309 3e-05
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.275 0.014 0.358 5e-05
O95714 4834 E3 ubiquitin-protein liga no no 0.275 0.014 0.358 6e-05
Q4R828376 RCC1 domain-containing pr N/A no 0.551 0.372 0.254 0.0002
Q15034 1050 Probable E3 ubiquitin-pro no no 0.657 0.159 0.215 0.0002
A6NED2376 RCC1 domain-containing pr no no 0.582 0.393 0.271 0.0004
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function desciption
 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 22  VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
           V+ WGY   G     S +  PIP R+ G    K V    CG    +A  ++G++  WG  
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231

Query: 79  DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
              G   L  G  G  P P  +       V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282

Pongo abelii (taxid: 9601)
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
356566559 525 PREDICTED: probable E3 ubiquitin-protein 0.826 0.4 0.660 8e-78
255586057 478 Ran GTPase binding protein, putative [Ri 0.862 0.458 0.625 2e-77
356523185 528 PREDICTED: LOW QUALITY PROTEIN: probable 0.834 0.401 0.642 2e-77
449448608 485 PREDICTED: probable E3 ubiquitin-protein 0.897 0.470 0.595 9e-76
449519078 472 PREDICTED: probable E3 ubiquitin-protein 0.846 0.455 0.620 7e-75
255566472 476 Serine/threonine-protein kinase Nek8, pu 0.885 0.472 0.603 1e-74
359482088 514 PREDICTED: probable E3 ubiquitin-protein 0.877 0.433 0.612 4e-73
224098477253 predicted protein [Populus trichocarpa] 0.897 0.901 0.587 1e-72
356539897 480 PREDICTED: probable E3 ubiquitin-protein 0.889 0.470 0.602 1e-72
356569137 472 PREDICTED: probable E3 ubiquitin-protein 0.877 0.472 0.600 6e-72
>gi|356566559|ref|XP_003551498.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 167/227 (73%), Gaps = 17/227 (7%)

Query: 19  ETVVYMWGYLPGTSPEKSPILSPIPARL----CGGDSWKDVCGGGCGFALATSESGKLIT 74
           E +VYMWGYLPG SPEKSPILSP P  L       DSWKDVCGGGCGFA+  SE GKLIT
Sbjct: 61  EKMVYMWGYLPGASPEKSPILSPAPVTLSDPSLAVDSWKDVCGGGCGFAMVISEKGKLIT 120

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECV 134
           WGSADDEGQSYL SGKHGE P  + LPTEASVVKAAAGWAHC SVTE GEVY WGW+ECV
Sbjct: 121 WGSADDEGQSYLISGKHGEIPGLYQLPTEASVVKAAAGWAHCASVTEEGEVYAWGWKECV 180

Query: 135 PSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP-------------SDKRAGEEVVKRRK 181
           PS KV  DF + GS QKD  GKQS+   EQ  P              +K+ G+EVVKRRK
Sbjct: 181 PSGKVITDFITVGSLQKDIAGKQSSSIAEQGSPQSSNTSSGSDSHHDNKKVGDEVVKRRK 240

Query: 182 TSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
            + +R++S++ ASGDEFFT+SP LVTL  GVKIT V+ GGRHTL LS
Sbjct: 241 ITFSRQDSDSQASGDEFFTVSPSLVTLGNGVKITSVSLGGRHTLALS 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356523185|ref|XP_003530222.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC3-like [Glycine max] Back     alignment and taxonomy information
>gi|449448608|ref|XP_004142058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519078|ref|XP_004166562.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255566472|ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] gi|223536498|gb|EEF38145.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359482088|ref|XP_002271900.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224098477|ref|XP_002311187.1| predicted protein [Populus trichocarpa] gi|222851007|gb|EEE88554.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356539897|ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|356569137|ref|XP_003552762.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2099986 488 AT3G55580 [Arabidopsis thalian 0.811 0.422 0.552 1.5e-60
UNIPROTKB|O95199 551 RCBTB2 "RCC1 and BTB domain-co 0.413 0.190 0.318 6.8e-06
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.417 0.240 0.292 9.7e-06
MGI|MGI:1917200 551 Rcbtb2 "regulator of chromosom 0.413 0.190 0.309 1.2e-05
TAIR|locus:2076889393 AT3G02510 "AT3G02510" [Arabido 0.389 0.251 0.321 1.3e-05
UNIPROTKB|E1B8U7377 RCCD1 "Uncharacterized protein 0.433 0.291 0.316 3.2e-05
UNIPROTKB|E2R5W9313 RCCD1 "Uncharacterized protein 0.318 0.258 0.355 8.6e-05
FB|FBgn0031107 4912 HERC2 "HECT and RLD domain con 0.271 0.014 0.361 9e-05
TAIR|locus:2146142 396 AT5G16040 "AT5G16040" [Arabido 0.429 0.275 0.282 9.4e-05
UNIPROTKB|E1BVG2 531 RCBTB1 "Uncharacterized protei 0.393 0.188 0.280 0.0001
TAIR|locus:2099986 AT3G55580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 122/221 (55%), Positives = 151/221 (68%)

Query:    21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
             VVYMWGYLPG SP++SP++SP+  ++      SWKDV GGGCGFA+AT+ESGKLITWGS 
Sbjct:    32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
             DD GQSY+TSGKHGETPEPFPLP E  V KA AGWAHCV+VTE  +VYTWGWREC+P+ +
Sbjct:    92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151

Query:   139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
             V          R+   S       S GK+S+  T      + R G E  K+R+ S +++ 
Sbjct:   152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209

Query:   189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
             +EN +  D    +  PCLV+L PGV+I  VAAGGRHTL LS
Sbjct:   210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALS 250
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|O95199 RCBTB2 "RCC1 and BTB domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1917200 Rcbtb2 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8U7 RCCD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R5W9 RCCD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0031107 HERC2 "HECT and RLD domain containing protein 2 ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVG2 RCBTB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0049024301
hypothetical protein (253 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 0.003
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 25  WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEG 82
           +G L   S  +   L+  P       S   +C    G   +L   + G L  +G   D G
Sbjct: 313 FGQLGAGSDGEIGALTTKPNYK-QLLSGVTICSISAGESHSLILRKDGTLYAFGR-GDRG 370

Query: 83  QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
           Q  +      +   P  L     + + A G  H ++ T+ G VY+WGW E
Sbjct: 371 QLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGE 420

Length = 476
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
KOG1427 443 consensus Uncharacterized conserved protein, conta 99.95
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.94
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.94
KOG1427 443 consensus Uncharacterized conserved protein, conta 99.91
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.82
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.74
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.73
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.7
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.52
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.44
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.4
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.17
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.08
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.56
KOG3669 705 consensus Uncharacterized conserved protein, conta 90.16
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 83.13
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 80.38
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information 
Probab=99.95  E-value=3.3e-28  Score=201.64  Aligned_cols=186  Identities=18%  Similarity=0.189  Sum_probs=144.2

Q ss_pred             CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCC
Q 025335            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG   82 (254)
Q Consensus         6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~G   82 (254)
                      .||.+-|.++++-+|+.|.||.|+ ||++++...  ..|+.+.-+...+|.+.++ |.+|+++||++|+||+||.| .+|
T Consensus        63 sG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~G  140 (443)
T KOG1427|consen   63 SGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYG  140 (443)
T ss_pred             cccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-ccc
Confidence            466677789999999999999998 899887543  4666666677788888888 88999999999999999999 899


Q ss_pred             ccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCC
Q 025335           83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT  162 (254)
Q Consensus        83 qLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~  162 (254)
                      |||+++.+.....++.+--...+|+.|+||.++++.|+..+.+.+.|.-.|||||+-..                ..++.
T Consensus       141 QlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td----------------~~~~~  204 (443)
T KOG1427|consen  141 QLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTD----------------NEFNM  204 (443)
T ss_pred             cccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcc----------------hhhcc
Confidence            99999765443333222223568999999999999999999999999999999994321                00000


Q ss_pred             CCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335          163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA  235 (254)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~  235 (254)
                      +             ...-++.             .+.++.|..|..+.+..|++++||.+||+|+++++.|+.
T Consensus       205 ~-------------~~~~~~~-------------~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVys  251 (443)
T KOG1427|consen  205 K-------------DSSVRLA-------------YEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYS  251 (443)
T ss_pred             c-------------cccceee-------------eecCCCccccccccceeeEEEeccCcceeeecCCccEEE
Confidence            0             0000111             224677888989999999999999999999999986554

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-05
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-04
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 8e-04
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-04
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-04
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-04
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 4e-04
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-04
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 60  CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
           CG  F++A ++SG + TWG  D     +  S  H   P          V+  A G  HCV
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330
Query: 118 SVTEAGEVYTWG 129
             TE GEVYTWG
Sbjct: 331 CCTEDGEVYTWG 342
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-15
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-12
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-12
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-10
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-08
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 9e-07
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-05
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-15
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-15
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-14
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-12
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-11
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-05
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-15
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-12
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-12
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-09
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-06
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 8e-05
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-13
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-12
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-10
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-09
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-08
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-12
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-12
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-11
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-11
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-08
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-06
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-05
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-05
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-04
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 38/218 (17%), Positives = 58/218 (26%), Gaps = 60/218 (27%)

Query: 22  VYMWGY-----L-PGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLIT 74
           +Y +G      L   TS + S      P  +        +  G      L   E G++  
Sbjct: 96  IYSFGCNDEGALGRDTSEDGS---ESKPDLIDLPGKALCISAGDSHSACL--LEDGRVFA 150

Query: 75  WGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
           WGS  D  G   +     G    P  L         A+G  H V +T AG+V+T G  E 
Sbjct: 151 WGSFRDSHGN--MGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE- 207

Query: 134 VPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA 193
                     G  G                                R +  +        
Sbjct: 208 ---------QGQLG--------------------------------RLSERSISGEGRRG 226

Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKS 231
             D    L P  + +        + A    T +   ++
Sbjct: 227 KRD---LLRPTQLIITRAKPFEAIWATNYCTFMRESQT 261
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 99.95
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 99.95
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.86
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 91.12
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=4.7e-35  Score=262.53  Aligned_cols=172  Identities=24%  Similarity=0.332  Sum_probs=151.2

Q ss_pred             CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCC
Q 025335            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG   82 (254)
Q Consensus         6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~G   82 (254)
                      -.|+..|.++|+++|+||+||.|. |+++.....  ..|.++..+...+|++|++ |..|++||+++|+||+||.| .+|
T Consensus       126 ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~-G~~hs~alt~~G~v~~wG~n-~~G  203 (406)
T 4d9s_A          126 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA-GAEHTAAVTEDGDLYGWGWG-RYG  203 (406)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE-CSSEEEEEETTSCEEEEECC-TTS
T ss_pred             EEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec-CCCeEEEEeCCCCEEEeeCC-CCC
Confidence            356788899999999999999987 788765443  4566666666779999999 78999999999999999999 899


Q ss_pred             ccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCC
Q 025335           83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT  162 (254)
Q Consensus        83 qLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~  162 (254)
                      |||++.......|+++..+...+|++|+||.+|++||+++|+||+||+|.+||||                         
T Consensus       204 qlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG-------------------------  258 (406)
T 4d9s_A          204 NLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG-------------------------  258 (406)
T ss_dssp             TTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC-------------------------
T ss_pred             CCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCC-------------------------
Confidence            9999988888889999888888999999999999999999999999999999999                         


Q ss_pred             CCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335          163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA  235 (254)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~  235 (254)
                                                     .++......|+++..+.+.+|++|+||.+|++||+++|+|+.
T Consensus       259 -------------------------------~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~  300 (406)
T 4d9s_A          259 -------------------------------HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYG  300 (406)
T ss_dssp             -------------------------------SSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             -------------------------------CCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEE
Confidence                                           333445778999998888899999999999999999997764
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-09
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-05
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-04
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-05
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 63  ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
              ++E G ++T G   D GQ  L      E  +P  +     VV+A AG  H V ++++
Sbjct: 8   RSHSTEPGLVLTLGQ-GDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 123 GEVYTWGW 130
           G+VY++G 
Sbjct: 66  GQVYSFGC 73
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 99.97
d1a12a_ 401 Regulator of chromosome condensation RCC1 {Human ( 99.96
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.9
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.85
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 91.92
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 90.38
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 82.11
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-30  Score=226.24  Aligned_cols=167  Identities=21%  Similarity=0.260  Sum_probs=132.8

Q ss_pred             CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCcc--cceeeeecC--CCCceEEEecCCCeEEEEeCCCcEEEEecCCC
Q 025335            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPIL--SPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADD   80 (254)
Q Consensus         6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~~--~p~~v~~~~--~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~   80 (254)
                      -.|+..+.++++++|+||.||.|. ++++......  .+.++....  ...++.+++ |..|+++|+++|+||+||.| .
T Consensus       225 v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~-g~~~~~~l~~~g~v~~wG~n-~  302 (401)
T d1a12a_         225 AFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG-GQHHTVCMDSEGKAYSLGRA-E  302 (401)
T ss_dssp             EEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE-CSSEEEEEETTSCEEEEECC-G
T ss_pred             EEecCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEee-eccceeeeccCCCEEEeccc-c
Confidence            345677899999999999999886 6666544332  333333222  355778888 77899999999999999999 7


Q ss_pred             CCccccCCC-CCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCC
Q 025335           81 EGQSYLTSG-KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSA  159 (254)
Q Consensus        81 ~GqLG~g~~-~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~  159 (254)
                      +||||.+.. .....|++++.+  .+|++|+||.+|++||+++|+||+||+|.+||||                      
T Consensus       303 ~gqlG~g~~~~~~~~P~~i~~~--~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG----------------------  358 (401)
T d1a12a_         303 YGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLG----------------------  358 (401)
T ss_dssp             GGTTCSCTTCCCEEEEEECCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTC----------------------
T ss_pred             cCccCCCcccccccCCEEcCCC--CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCC----------------------
Confidence            999999853 344456666654  5799999999999999999999999999999999                      


Q ss_pred             CCCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEee--CCCCcEEEEEecCCeEEEEecCCc
Q 025335          160 LPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTL--NPGVKITKVAAGGRHTLILSGKSL  232 (254)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~--~~~~~I~~Ia~G~~hs~~Lt~~G~  232 (254)
                                                        +|+...+..|++|..  +.+.+|++|+||.+||++|++||+
T Consensus       359 ----------------------------------~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         359 ----------------------------------TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             ----------------------------------SSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             ----------------------------------CCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEECCc
Confidence                                              444556778888764  456789999999999999999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure