Citrus Sinensis ID: 025409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccHHEEEEHEEHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mlptsvskgrssssasrtnpmfPQYLRRIIKWQQMDIEYTFWQMLHlctspkvvyqHTKYHkqtknqwarddpAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLtnsylredspnshvVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNflgydvlpflerttfflypigvcivlspililsgfnpsryFMNMYFSWRL
Flexible Loop (DISEMBL)
mlptsvskgrssssasrtnpmfPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKqtknqwardDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Low Complexity Region (SEG)
MLPTsvskgrssssasRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Disordered region (IsUnstruct)
*********************FPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSW**
Disordered Region (DISOPRED)
***********************QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSY***************EWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Disordered Region (DISEMBL)
******************NPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Disordered Region (DISPRO)
*******************PMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q54DD7	261	Protein unc-50 homolog OS	yes	no	0.996	0.965	0.450	4e-62
Q53HI1	259	Protein unc-50 homolog OS	yes	no	0.897	0.876	0.400	2e-44
O55227	259	Protein unc-50 homolog OS	yes	no	0.897	0.876	0.396	7e-44
Q3ZBG6	259	Protein unc-50 homolog OS	yes	no	0.897	0.876	0.392	9e-44
Q9CQ61	259	Protein unc-50 homolog OS	yes	no	0.897	0.876	0.392	2e-43
Q7ZUU1	259	Protein unc-50 homolog OS	yes	no	0.940	0.918	0.369	4e-41
Q6DKM1	259	Protein unc-50 homolog A	N/A	no	0.885	0.864	0.371	8e-41
Q5U520	259	Protein unc-50 homolog B	N/A	no	0.928	0.907	0.373	2e-40
Q9VHN5	275	Protein unc-50 homolog OS	yes	no	0.944	0.869	0.358	8e-36
Q10045	301	Protein unc-50 OS=Caenorh	yes	no	0.873	0.734	0.390	7e-35

>sp|Q54DD7|UNC50_DICDI Protein unc-50 homolog OS=Dictyostelium discoideum GN=DDB_G0292320 PE=3 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/262 (45%), Positives = 173/262 (66%), Gaps = 10/262 (3%)

Query: 1   MLPTS--------VSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPK 52
           MLP S        +++  ++SSASR   + P+Y RRI  + QMDIEYTFW M +LC +P 
Sbjct: 1   MLPISYTNLNSSRITRDGTASSASRYRRLIPEYFRRIFHYPQMDIEYTFWIMFYLCFNPS 60

Query: 53  VVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDH-SATHAIFVVISVLLF 111
            VY+ T +HKQTKNQWARDDPAF VI    +++A+++Y   +   S  + I V+   +  
Sbjct: 61  RVYRVTSWHKQTKNQWARDDPAFAVILVFFMAIASMSYAITFHFLSFLNVIKVMFWAVFV 120

Query: 112 HFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHY 171
            F+  G ++AT  W++TN +LR  S ++H V+Q VEWLYAFD+HCNSFFP+F++LYV+ +
Sbjct: 121 DFITVGLLIATIGWWVTNKFLRV-SVHNHSVDQSVEWLYAFDIHCNSFFPLFIILYVVQF 179

Query: 172 FLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSP 231
           FL P+L+ +     +LSN L++   SYY+Y+ FLGY+ LPFL+ T  FLYPIG+   L  
Sbjct: 180 FLLPILLSNSLFAAILSNTLYIIGFSYYYYVTFLGYNALPFLQHTVVFLYPIGILFALYI 239

Query: 232 ILILSGFNPSRYFMNMYFSWRL 253
           + ++ G N +   +N YF ++L
Sbjct: 240 VSVVMGKNLTVSIINFYFGFQL 261

Dictyostelium discoideum (taxid: 44689)

>sp|Q53HI1|UNC50_HUMAN Protein unc-50 homolog OS=Homo sapiens GN=UNC50 PE=1 SV=2

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 144/237 (60%), Gaps = 10/237 (4%)

Query: 4   TSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQ 63
            S    R ++ A R      +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQ
Sbjct: 18  NSRDAARHTAGAKRY-----KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQ 72

Query: 64  TKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATF 123
           TK+QWARDDPAF+V+ S+ L V+TI +    D      I +++ V+L   +  G ++AT 
Sbjct: 73  TKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVLIDCVGVGLLIATL 132

Query: 124 CWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGF 182
            WF++N YL +     +     VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   F
Sbjct: 133 MWFISNKYLVKRQSRDY----DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTF 188

Query: 183 IPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFN 239
           I  L+ N L++ A  YY Y+ FLGY  LPFL+ T   LYP    I+L  + +  G+N
Sbjct: 189 IGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSLALGWN 245

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Homo sapiens (taxid: 9606)

>sp|O55227|UNC50_RAT Protein unc-50 homolog OS=Rattus norvegicus GN=Unc50 PE=1 SV=1

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 143/237 (60%), Gaps = 10/237 (4%)

Query: 4   TSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQ 63
            S    R ++ A R      +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQ
Sbjct: 18  NSRDAARHTAGAKRY-----KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQ 72

Query: 64  TKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATF 123
           TK+QWARDDPAF+V+ S+ L V+TI +    D      I +++ V+    +  G +++T 
Sbjct: 73  TKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTL 132

Query: 124 CWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGF 182
            WF++N YL +     +     VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   F
Sbjct: 133 MWFISNKYLVKRQSRDY----DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTF 188

Query: 183 IPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFN 239
           I  L+ N L++ A  YY Y+ FLGY  LPFL+ T   LYP    IVL  + +  G+N
Sbjct: 189 IGYLVGNTLWLIAVGYYIYVTFLGYSALPFLKNTVVLLYPFAPLIVLYGLSLALGWN 245

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBG6|UNC50_BOVIN Protein unc-50 homolog OS=Bos taurus GN=UNC50 PE=2 SV=1

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 144/237 (60%), Gaps = 10/237 (4%)

Query: 4   TSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQ 63
           +S    R ++ A R      +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQ
Sbjct: 18  SSRDAARHTAGAKRY-----KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQ 72

Query: 64  TKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATF 123
           TK+QWARDDPAF+V+ S+ L V+TI +    D      I +++ V+    +  G +++T 
Sbjct: 73  TKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTL 132

Query: 124 CWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGF 182
            WF++N YL +     +     VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   F
Sbjct: 133 MWFISNKYLVKRQSRDY----DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTF 188

Query: 183 IPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFN 239
           I  L+ N L++ A  YY Y+ FLGY  LPFL+ T   LYP    I+L  + +  G+N
Sbjct: 189 IGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSLALGWN 245

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Bos taurus (taxid: 9913)

>sp|Q9CQ61|UNC50_MOUSE Protein unc-50 homolog OS=Mus musculus GN=Unc50 PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 10/237 (4%)

Query: 4   TSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQ 63
            S    R ++ A R      +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQ
Sbjct: 18  NSRDAARHTAGAKRY-----KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQ 72

Query: 64  TKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATF 123
           TK+QWARDDPAF+V+ S+ L V+TI +    D      I +++ V+    +  G +++T 
Sbjct: 73  TKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTL 132

Query: 124 CWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGF 182
            WF++N YL +     +     VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   F
Sbjct: 133 MWFVSNKYLVKRQSRDY----DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTF 188

Query: 183 IPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFN 239
           I  L+ N L++ A  YY Y+ FLGY  LPFL+ T   LYP    +VL  + +  G+N
Sbjct: 189 IGYLVGNTLWLIAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLMVLYGLSLALGWN 245

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Mus musculus (taxid: 10090)

>sp|Q7ZUU1|UNC50_DANRE Protein unc-50 homolog OS=Danio rerio GN=unc50 PE=2 SV=1

 Score =  168 bits (425), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 151/252 (59%), Gaps = 14/252 (5%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFP-------QYLRRIIKWQQMDIEYTFWQMLHLCTSPKV 53
           MLPTS  +   + S S  +           +YLRR++ ++QMD E+  WQML+L TSP+ 
Sbjct: 1   MLPTSSPQIHRNGSLSERDAARHTAGAKRYKYLRRLLHFRQMDFEFAVWQMLYLFTSPQK 60

Query: 54  VYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHF 113
           VY++  Y KQTK+QWARDDPAF+V+ S+ L V+T+ +    D      + +++ V+    
Sbjct: 61  VYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTVGFGLVLDMGFVETLTLLLWVVFIDC 120

Query: 114 LITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YF 172
           +  G +++T  WF+TN YL +  PN    +  VEW YAFDVH N+F+P+ V+L+ +  +F
Sbjct: 121 IGVGLLISTLMWFVTNKYLMK-HPNR---DYDVEWGYAFDVHLNAFYPLLVILHFLQLFF 176

Query: 173 LSPLLMVHG--FIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLS 230
           ++ ++++    F+   + N +++ A  YY Y+ FLGY  LPFL+ T   LYP  +  +L 
Sbjct: 177 INHVVVISSDWFLGYFVGNTMWLIAIGYYVYITFLGYSALPFLKNTVVLLYPFALLGLLY 236

Query: 231 PILILSGFNPSR 242
            + I  G+N ++
Sbjct: 237 VLSISLGWNFTK 248

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Danio rerio (taxid: 7955)

>sp|Q6DKM1|UN50A_XENLA Protein unc-50 homolog A OS=Xenopus laevis GN=unc50-a PE=2 SV=1

 Score =  167 bits (422), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 138/234 (58%), Gaps = 10/234 (4%)

Query: 7   SKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKN 66
              R ++ A R      +YLRR+  ++QMD E+  WQML+L TSP+ VY++  Y KQTK+
Sbjct: 21  EAARHTAGAKRY-----KYLRRLFHFKQMDFEFALWQMLYLFTSPQKVYRNFHYRKQTKD 75

Query: 67  QWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWF 126
           QWARDDPAF+V+ S+ L V+T+ +    D S      +++ V+    +  G ++AT  WF
Sbjct: 76  QWARDDPAFLVLLSIWLCVSTVGFGFVLDMSFFETFKLLLWVVFIDCVGVGLLIATLMWF 135

Query: 127 LTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPV 185
           ++N Y+ +     +     VEW Y FDVH N+F+P+ V+L+ I  +F++ +++   FI  
Sbjct: 136 VSNKYMVKRQGKDY----DVEWGYTFDVHLNAFYPLLVILHFIQLFFINHVILSGWFIGY 191

Query: 186 LLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFN 239
            + N +++ A  YY Y+ FLGY  LPFL+ T   LYP     +L  + +  G+N
Sbjct: 192 FVGNTIWLIAIGYYIYITFLGYSALPFLKNTVILLYPFAALALLYVLSLALGWN 245

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Xenopus laevis (taxid: 8355)

>sp|Q5U520|UN50B_XENLA Protein unc-50 homolog B OS=Xenopus laevis GN=unc50-b PE=2 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 143/249 (57%), Gaps = 14/249 (5%)

Query: 1   MLPTSVSKGRSSSS-------ASR--TNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSP 51
           MLPT+    RS  +       A+R        +YLRR+  ++QMD E+  WQML+L TSP
Sbjct: 1   MLPTTSVSPRSPDNGILSPRDATRHTAGAKRYKYLRRLFHFKQMDFEFALWQMLYLFTSP 60

Query: 52  KVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLF 111
           + VY++  Y KQTK+QWARDDPAF+V+  + L V+T+ +    D S      +++ V+  
Sbjct: 61  QKVYRNFHYRKQTKDQWARDDPAFLVLLGIWLCVSTVGFGFVLDMSFFETFTLLLWVVFI 120

Query: 112 HFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH- 170
             +  G ++AT  WF++N Y+     N    +  VEW Y FDVH N+F+P+ V+L+ I  
Sbjct: 121 DCVGVGLLIATSMWFVSNKYM----VNRQGKDYDVEWGYTFDVHLNAFYPLLVILHFIQL 176

Query: 171 YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLS 230
           +F++ +++   FI   + N L++ A  YY Y+ FLGY  LPFL+ T   LYP     +L 
Sbjct: 177 FFINHVILTGWFIGCFVGNTLWLIAIGYYIYITFLGYSALPFLKNTVVLLYPFAALALLY 236

Query: 231 PILILSGFN 239
            + +  G+N
Sbjct: 237 ILSLALGWN 245

May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA.

Xenopus laevis (taxid: 8355)

>sp|Q9VHN5|UNC50_DROME Protein unc-50 homolog OS=Drosophila melanogaster GN=CG9773 PE=1 SV=1

 Score =  150 bits (379), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 143/248 (57%), Gaps = 9/248 (3%)

Query: 2   LPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYH 61
           LP   +  R   SA+  +    +YLRR++K+ QMD E+  WQML+L  +P+ VY++  Y 
Sbjct: 31  LPPPANHRRDCLSATTKSY---KYLRRLLKFNQMDFEFALWQMLYLFVAPQKVYRNFNYR 87

Query: 62  KQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLA 121
           KQTK+Q+ARDDPAF+V+  + L V ++ +      S   +I  +  V+    +  G ++A
Sbjct: 88  KQTKSQFARDDPAFLVLLVVCLCVTSLGFAYVLGLSFWQSISFIFYVVFVDCIFVGIIIA 147

Query: 122 TFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVH 180
           +F W +TN YLR +S     +E  +EW YAFDVH N+FFP  ++L+ I  +F + L+   
Sbjct: 148 SFFWAVTNRYLRTNS-----LEPDIEWGYAFDVHLNAFFPPLMLLHFIQLFFYNWLISQT 202

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
            FI   L N  ++    YY Y+ FLGY+ +P L+ T   L  + +  +L  ++ + G+N 
Sbjct: 203 WFISRFLGNTFWLMGMGYYVYITFLGYNCIPHLKNTRIILIALPIIFLLFLVVTIIGWNA 262

Query: 241 SRYFMNMY 248
           +  F+N Y
Sbjct: 263 TISFVNFY 270

May be required for cell surface expression of acetylcholine receptors.

Drosophila melanogaster (taxid: 7227)

>sp|Q10045|UNC50_CAEEL Protein unc-50 OS=Caenorhabditis elegans GN=unc-50 PE=2 SV=2

 Score =  147 bits (371), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 7/228 (3%)

Query: 24  QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
           ++ RR++  +QMD E+  WQML+L   P  VY++  Y K+TK+Q+ARDDPAF+V+ +L L
Sbjct: 66  RFTRRLVHIRQMDFEFALWQMLYLLIQPSKVYKNFIYRKRTKDQFARDDPAFLVLLALSL 125

Query: 84  SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
             ++I Y  A            +  +    +  G ++AT  W+++N +LR+      V +
Sbjct: 126 LFSSIFYAYALGLEKIGFFTFFLWSVFVDCIGVGVVIATVLWWVSNRFLRK------VRD 179

Query: 144 QRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH-GFIPVLLSNLLFMAAASYYHYL 202
           Q VEW Y FDVH N+FFPM ++L+VI   L P L+    F+ +LL N  +  AA YY Y+
Sbjct: 180 QDVEWGYCFDVHLNAFFPMLILLHVIVPILYPTLIDSPAFLSILLGNTFWFLAACYYVYI 239

Query: 203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFS 250
            FLGY  LP L +T +FLYPI    +     +  G+N SR  +N Y S
Sbjct: 240 TFLGYTALPILHKTQYFLYPISFIFMFFVATLTGGWNISRTALNFYHS 287

Required for cell surface expression of acetylcholine receptors in body-wall muscles.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
359475413	251	PREDICTED: protein unc-50 homolog [Vitis	0.980	0.988	0.892	1e-125
296090443	258	unnamed protein product [Vitis vinifera]	0.980	0.961	0.867	1e-124
388500148	252	unknown [Lotus japonicus]	0.996	1.0	0.837	1e-123
388516421	257	unknown [Medicago truncatula]	0.996	0.980	0.848	1e-120
351722169	255	uncharacterized protein LOC100500001 [Gl	0.996	0.988	0.839	1e-120
356575672	258	PREDICTED: protein unc-50 homolog [Glyci	0.996	0.976	0.833	1e-120
449438363	252	PREDICTED: protein unc-50 homolog [Cucum	0.996	1.0	0.845	1e-119
297836138	252	hypothetical protein ARALYDRAFT_899735 [	0.996	1.0	0.849	1e-117
21537108	252	unknown [Arabidopsis thaliana]	0.996	1.0	0.849	1e-114
18397766	252	UNC-50-like protein [Arabidopsis thalian	0.996	1.0	0.845	1e-113

>gi|359475413|ref|XP_002282581.2| PREDICTED: protein unc-50 homolog [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/250 (89%), Positives = 232/250 (92%), Gaps = 2/250 (0%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT VSKGRS S+ SR NPMF QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY
Sbjct: 1   MLPT-VSKGRSPSN-SRPNPMFLQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 58

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAFVVICSLLL VAT AYCAAYDHS+ HA+FVVISVLLFHFLITG  L
Sbjct: 59  HKQTKNQWARDDPAFVVICSLLLVVATSAYCAAYDHSSAHAVFVVISVLLFHFLITGIFL 118

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
           AT CWFLTN+YLRE++PNSHVVEQRVEWLYAFDVHCNSFFPMFV+LYVIHYFLSPLL+ H
Sbjct: 119 ATCCWFLTNAYLREEAPNSHVVEQRVEWLYAFDVHCNSFFPMFVLLYVIHYFLSPLLVAH 178

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
           GFIPVLLSNLLFM A SYYHYLNFLGYDVLPFLERTTFFLYPIG  I+LSPI ILSGFNP
Sbjct: 179 GFIPVLLSNLLFMVATSYYHYLNFLGYDVLPFLERTTFFLYPIGCVIILSPIFILSGFNP 238

Query: 241 SRYFMNMYFS 250
           SRY MNMYFS
Sbjct: 239 SRYIMNMYFS 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090443|emb|CBI40262.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/257 (86%), Positives = 232/257 (90%), Gaps = 9/257 (3%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT VSKGRS S+ SR NPMF QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY
Sbjct: 1   MLPT-VSKGRSPSN-SRPNPMFLQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 58

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAFVVICSLLL VAT AYCAAYDHS+ HA+FVVISVLLFHFLITG  L
Sbjct: 59  HKQTKNQWARDDPAFVVICSLLLVVATSAYCAAYDHSSAHAVFVVISVLLFHFLITGIFL 118

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEW-------LYAFDVHCNSFFPMFVMLYVIHYFL 173
           AT CWFLTN+YLRE++PNSHVVEQRVEW       LYAFDVHCNSFFPMFV+LYVIHYFL
Sbjct: 119 ATCCWFLTNAYLREEAPNSHVVEQRVEWQDSSASVLYAFDVHCNSFFPMFVLLYVIHYFL 178

Query: 174 SPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPIL 233
           SPLL+ HGFIPVLLSNLLFM A SYYHYLNFLGYDVLPFLERTTFFLYPIG  I+LSPI 
Sbjct: 179 SPLLVAHGFIPVLLSNLLFMVATSYYHYLNFLGYDVLPFLERTTFFLYPIGCVIILSPIF 238

Query: 234 ILSGFNPSRYFMNMYFS 250
           ILSGFNPSRY MNMYFS
Sbjct: 239 ILSGFNPSRYIMNMYFS 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500148|gb|AFK38140.1| unknown [Lotus japonicus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/253 (83%), Positives = 232/253 (91%), Gaps = 1/253 (0%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT+ SKGR+SSS SR N     YLR+IIKWQQMDIEYTFWQM HLCT+PKVVYQHTKY
Sbjct: 1   MLPTA-SKGRASSSTSRPNSTLLPYLRKIIKWQQMDIEYTFWQMFHLCTAPKVVYQHTKY 59

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAFVVICSLLL+VAT+AYCAAYDHS  HA+FVV SVLLFHFL+TG  L
Sbjct: 60  HKQTKNQWARDDPAFVVICSLLLAVATLAYCAAYDHSIAHAVFVVFSVLLFHFLLTGVFL 119

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
           ATFCWFLTNSYLRE++PNS+VVEQRVEW+YAFDVHCNSFFPMFV+LYVIHYFLSPLL+ H
Sbjct: 120 ATFCWFLTNSYLREEAPNSYVVEQRVEWMYAFDVHCNSFFPMFVLLYVIHYFLSPLLVAH 179

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
           GFIP LLSN+L M  ASYYHYLNFLGYDVLPFLERTTFFLYPIGV IVLSPILILSGFNP
Sbjct: 180 GFIPTLLSNILVMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILILSGFNP 239

Query: 241 SRYFMNMYFSWRL 253
           SRYF+++YFS ++
Sbjct: 240 SRYFLSVYFSRQI 252

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516421|gb|AFK46272.1| unknown [Medicago truncatula]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 236/258 (91%), Gaps = 6/258 (2%)

Query: 1   MLPTSVSKGRSSSSAS-----RTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVY 55
           MLPT VSKGRSSSS+S     R N     YLRRIIKWQQMD+EYTFWQMLHLCTSPKVVY
Sbjct: 1   MLPT-VSKGRSSSSSSSSSSSRPNSTLLPYLRRIIKWQQMDVEYTFWQMLHLCTSPKVVY 59

Query: 56  QHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLI 115
           QHTKYHKQTKNQWARDDPAFVVICSLLL+VAT+AYCAAYDHS+ HA+FVV SVLLFHFL+
Sbjct: 60  QHTKYHKQTKNQWARDDPAFVVICSLLLAVATLAYCAAYDHSSGHALFVVFSVLLFHFLL 119

Query: 116 TGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSP 175
           TG  LATFCWFLTNSYLRE++PNS+VV+QRVEW+YAFDVHCNSFFPMFV+LYVIHYFLSP
Sbjct: 120 TGIFLATFCWFLTNSYLREEAPNSYVVKQRVEWMYAFDVHCNSFFPMFVLLYVIHYFLSP 179

Query: 176 LLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILIL 235
           LL+ HGFIP LLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIGV IVLSPILIL
Sbjct: 180 LLVAHGFIPELLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILIL 239

Query: 236 SGFNPSRYFMNMYFSWRL 253
           SGFNPSRYFMN+YFS ++
Sbjct: 240 SGFNPSRYFMNIYFSRQI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722169|ref|NP_001235443.1| uncharacterized protein LOC100500001 [Glycine max] gi|255628425|gb|ACU14557.1| unknown [Glycine max]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/256 (83%), Positives = 233/256 (91%), Gaps = 4/256 (1%)

Query: 1   MLPTSVSKGRSSSSASR---TNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQH 57
           MLPT+ SKGRSSSS+S     NPM   YLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQH
Sbjct: 1   MLPTA-SKGRSSSSSSSSRPNNPMLLPYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQH 59

Query: 58  TKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITG 117
           TKYHKQTKNQWARDDPAFVVICSLLL+VAT+AYCAAYDHS  H + V+ SVL FHF++TG
Sbjct: 60  TKYHKQTKNQWARDDPAFVVICSLLLAVATLAYCAAYDHSTAHTLLVIFSVLFFHFILTG 119

Query: 118 AMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLL 177
             LATFCWFLTNSYLRE++PNS+VVEQRVEW+YAFDVHCNSFFP+FV+LYVIHYFLSPLL
Sbjct: 120 VFLATFCWFLTNSYLREEAPNSYVVEQRVEWMYAFDVHCNSFFPLFVLLYVIHYFLSPLL 179

Query: 178 MVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSG 237
           + HGFIPVLLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIG+ IVLSPILILSG
Sbjct: 180 VAHGFIPVLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGIVIVLSPILILSG 239

Query: 238 FNPSRYFMNMYFSWRL 253
           FNPS YFMNMYFS ++
Sbjct: 240 FNPSSYFMNMYFSRQI 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575672|ref|XP_003555962.1| PREDICTED: protein unc-50 homolog [Glycine max]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/259 (83%), Positives = 232/259 (89%), Gaps = 7/259 (2%)

Query: 1   MLPTSVSKGRSSSSASR------TNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVV 54
           MLPT+ SKGRSSSS+S        NPM   YLRRIIKWQQMDIEYTFWQMLHLCTSPKVV
Sbjct: 1   MLPTA-SKGRSSSSSSSSSSSRPNNPMLLPYLRRIIKWQQMDIEYTFWQMLHLCTSPKVV 59

Query: 55  YQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFL 114
           YQHTKYHKQTKNQWARDDPAFVVIC LLL+VAT+AYCAAYDHS  H + V+ SVLLFHFL
Sbjct: 60  YQHTKYHKQTKNQWARDDPAFVVICCLLLAVATLAYCAAYDHSTAHTLLVIFSVLLFHFL 119

Query: 115 ITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLS 174
           +TG  LATFCWFLTN YLRE++PNS+VVEQRVEW+YAFDVHCNSFFP FV+LYVIHYFLS
Sbjct: 120 LTGVFLATFCWFLTNGYLREEAPNSYVVEQRVEWMYAFDVHCNSFFPFFVLLYVIHYFLS 179

Query: 175 PLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILI 234
           PLL+ HGFIPVLLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIG+ IVLSPILI
Sbjct: 180 PLLVAHGFIPVLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGIVIVLSPILI 239

Query: 235 LSGFNPSRYFMNMYFSWRL 253
           LSGFNPSRYFMNMYFS ++
Sbjct: 240 LSGFNPSRYFMNMYFSRQI 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438363|ref|XP_004136958.1| PREDICTED: protein unc-50 homolog [Cucumis sativus] gi|449519876|ref|XP_004166960.1| PREDICTED: protein unc-50 homolog [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/253 (84%), Positives = 231/253 (91%), Gaps = 1/253 (0%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT+    RSSSS SR NPM+ QYLRRI+KWQQMDIEYTFWQMLHLCTSPKVVYQHTKY
Sbjct: 1   MLPTASRG-RSSSSTSRANPMYLQYLRRIVKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 59

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAF+VICSLLL+VAT+AYCAAYDHSA HA FVVISVLLFH LITGA+L
Sbjct: 60  HKQTKNQWARDDPAFIVICSLLLAVATLAYCAAYDHSAAHASFVVISVLLFHLLITGAIL 119

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
           AT CW LTN+YLRE++P SHVVEQRVEWLYAFDVHCNSFFPMFV+LYVIHYF+SPLL+ H
Sbjct: 120 ATCCWLLTNAYLREETPGSHVVEQRVEWLYAFDVHCNSFFPMFVLLYVIHYFISPLLVAH 179

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
           GFIP+LLSNLLFM  ASYYHY+NFLGYDVLPFLE+TTFFLYPIGV  VL+PI IL GFNP
Sbjct: 180 GFIPLLLSNLLFMIGASYYHYVNFLGYDVLPFLEKTTFFLYPIGVVFVLTPIFILIGFNP 239

Query: 241 SRYFMNMYFSWRL 253
           SRYFMNMYFS  L
Sbjct: 240 SRYFMNMYFSQNL 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836138|ref|XP_002885951.1| hypothetical protein ARALYDRAFT_899735 [Arabidopsis lyrata subsp. lyrata] gi|297331791|gb|EFH62210.1| hypothetical protein ARALYDRAFT_899735 [Arabidopsis lyrata subsp. lyrata]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/253 (84%), Positives = 233/253 (92%), Gaps = 1/253 (0%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT+    RSSSS+SR NPMF QY RRI+KWQQMD+EYTFWQML+LCTSPKVVYQHTKY
Sbjct: 1   MLPTTSRS-RSSSSSSRANPMFLQYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKY 59

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAF+VICSLLL VAT+AYC  YDHS +HA+ VV+SVLL HFLITGA++
Sbjct: 60  HKQTKNQWARDDPAFIVICSLLLVVATVAYCVTYDHSGSHAVVVVVSVLLTHFLITGAVI 119

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
           AT CWFLTNSYLRE++PNSHVVEQRVEWLY FDVHCNSFFPMFV+LYV+HYFLSPLL+ H
Sbjct: 120 ATCCWFLTNSYLREETPNSHVVEQRVEWLYTFDVHCNSFFPMFVLLYVVHYFLSPLLITH 179

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
           GFIP+LLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIGV IVLSPILILSGFNP
Sbjct: 180 GFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILILSGFNP 239

Query: 241 SRYFMNMYFSWRL 253
           SRYFMNMYFS RL
Sbjct: 240 SRYFMNMYFSQRL 252

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537108|gb|AAM61449.1| unknown [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/253 (84%), Positives = 234/253 (92%), Gaps = 1/253 (0%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT+    RSSSS+SR NPMF QY RRI+KWQQMD+EYTFWQML+LCTSPKVVYQHTKY
Sbjct: 1   MLPTTSRS-RSSSSSSRANPMFLQYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKY 59

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAF+VICSLLL VAT+AYC  YDHS++HA+ VV+SVLL HFLITGA++
Sbjct: 60  HKQTKNQWARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLLTHFLITGAVI 119

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
           AT CWFLTNSYLRE++PNSHVVEQRVEWLY FDVHCNSFFPMFV+LYV+HYFLSPLL+ H
Sbjct: 120 ATCCWFLTNSYLREETPNSHVVEQRVEWLYTFDVHCNSFFPMFVLLYVVHYFLSPLLIAH 179

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
           GFIP+LLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIGV IVLSPILILSGFNP
Sbjct: 180 GFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILILSGFNP 239

Query: 241 SRYFMNMYFSWRL 253
           SRYFMNMYFS RL
Sbjct: 240 SRYFMNMYFSQRL 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397766|ref|NP_565370.1| UNC-50-like protein [Arabidopsis thaliana] gi|14190389|gb|AAK55675.1|AF378872_1 At2g15240/F15A23.2 [Arabidopsis thaliana] gi|15450545|gb|AAK96450.1| At2g15240/F15A23.2 [Arabidopsis thaliana] gi|20197743|gb|AAD25568.2| expressed protein [Arabidopsis thaliana] gi|330251284|gb|AEC06378.1| UNC-50-like protein [Arabidopsis thaliana]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/253 (84%), Positives = 233/253 (92%), Gaps = 1/253 (0%)

Query: 1   MLPTSVSKGRSSSSASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
           MLPT+    RSSSS+SR NPMF QY RRI+KWQQMD+EYTFWQML+LCTSPKVVYQHTKY
Sbjct: 1   MLPTTSRS-RSSSSSSRANPMFLQYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKY 59

Query: 61  HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
           HKQTKNQWARDDPAF+VICSLLL VAT+AYC  YDHS++HA+ VV+SVL  HFLITGA++
Sbjct: 60  HKQTKNQWARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLFTHFLITGAVI 119

Query: 121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
           AT CWFLTNSYLRE++PNSHVVEQRVEWLY FDVHCNSFFPMFV+LYV+HYFLSPLL+ H
Sbjct: 120 ATCCWFLTNSYLREETPNSHVVEQRVEWLYTFDVHCNSFFPMFVLLYVVHYFLSPLLIAH 179

Query: 181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
           GFIP+LLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIGV IVLSPILILSGFNP
Sbjct: 180 GFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILILSGFNP 239

Query: 241 SRYFMNMYFSWRL 253
           SRYFMNMYFS RL
Sbjct: 240 SRYFMNMYFSQRL 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2041829	252	AT2G15240 "AT2G15240" [Arabido	0.996	1.0	0.822	4.9e-117
DICTYBASE|DDB_G0292320	261	DDB_G0292320 "UNC-50 family pr	0.932	0.904	0.462	6.4e-60
UNIPROTKB|Q53HI1	259	UNC50 "Protein unc-50 homolog"	0.873	0.853	0.407	9.1e-45
RGD|621749	259	Unc50 "unc-50 homolog (C. eleg	0.873	0.853	0.402	3.9e-44
UNIPROTKB|Q3ZBG6	259	UNC50 "Protein unc-50 homolog"	0.873	0.853	0.398	5e-44
UNIPROTKB|I3LLY5	259	UNC50 "Uncharacterized protein	0.873	0.853	0.398	5e-44
MGI|MGI:1914637	259	Unc50 "unc-50 homolog (C. eleg	0.873	0.853	0.398	8.1e-44
UNIPROTKB|E1BW23	259	UNC50 "Uncharacterized protein	0.873	0.853	0.393	3.5e-43
ZFIN|ZDB-GENE-040426-907	259	unc50 "unc-50 homolog (C. eleg	0.837	0.818	0.392	9.3e-43
WB|WBGene00006785	301	unc-50 [Caenorhabditis elegans	0.869	0.730	0.401	3.3e-40

TAIR|locus:2041829 AT2G15240 "AT2G15240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 208/253 (82%), Positives = 225/253 (88%)

Query:     1 MLPTXXXXXXXXXXXXRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKY 60
             MLPT            R NPMF QY RRI+KWQQMD+EYTFWQML+LCTSPKVVYQHTKY
Sbjct:     1 MLPTTSRSRSSSSSS-RANPMFLQYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKY 59

Query:    61 HKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAML 120
             HKQTKNQWARDDPAF+VICSLLL VAT+AYC  YDHS++HA+ VV+SVL  HFLITGA++
Sbjct:    60 HKQTKNQWARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLFTHFLITGAVI 119

Query:   121 ATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH 180
             AT CWFLTNSYLRE++PNSHVVEQRVEWLY FDVHCNSFFPMFV+LYV+HYFLSPLL+ H
Sbjct:   120 ATCCWFLTNSYLREETPNSHVVEQRVEWLYTFDVHCNSFFPMFVLLYVVHYFLSPLLIAH 179

Query:   181 GFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNP 240
             GFIP+LLSNLLFM  ASYYHYLNFLGYDVLPFLERTTFFLYPIGV IVLSPILILSGFNP
Sbjct:   180 GFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILILSGFNP 239

Query:   241 SRYFMNMYFSWRL 253
             SRYFMNMYFS RL
Sbjct:   240 SRYFMNMYFSQRL 252

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0292320 DDB_G0292320 "UNC-50 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 110/238 (46%), Positives = 160/238 (67%)

Query:    17 RTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFV 76
             R   + P+Y RRI  + QMDIEYTFW M +LC +P  VY+ T +HKQTKNQWARDDPAF 
Sbjct:    25 RYRRLIPEYFRRIFHYPQMDIEYTFWIMFYLCFNPSRVYRVTSWHKQTKNQWARDDPAFA 84

Query:    77 VICSLLLSVATIAYCAAYDH-SATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLRED 135
             VI    +++A+++Y   +   S  + I V+   +   F+  G ++AT  W++TN +LR  
Sbjct:    85 VILVFFMAIASMSYAITFHFLSFLNVIKVMFWAVFVDFITVGLLIATIGWWVTNKFLRV- 143

Query:   136 SPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAA 195
             S ++H V+Q VEWLYAFD+HCNSFFP+F++LYV+ +FL P+L+ +     +LSN L++  
Sbjct:   144 SVHNHSVDQSVEWLYAFDIHCNSFFPLFIILYVVQFFLLPILLSNSLFAAILSNTLYIIG 203

Query:   196 ASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSWRL 253
              SYY+Y+ FLGY+ LPFL+ T  FLYPIG+   L  + ++ G N +   +N YF ++L
Sbjct:   204 FSYYYYVTFLGYNALPFLQHTVVFLYPIGILFALYIVSVVMGKNLTVSIINFYFGFQL 261

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q53HI1 UNC50 "Protein unc-50 homolog" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 92/226 (40%), Positives = 141/226 (62%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    33 KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWL 92

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+TI +    D      I +++ V+L   +  G ++AT  WF++N YL +     +   
Sbjct:    93 CVSTIGFGFVLDMGFFETIKLLLWVVLIDCVGVGLLIATLMWFISNKYLVKRQSRDY--- 149

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYL 202
               VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   FI  L+ N L++ A  YY Y+
Sbjct:   150 -DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYV 208

Query:   203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMY 248
              FLGY  LPFL+ T   LYP    I+L  + +  G+N +    + Y
Sbjct:   209 TFLGYSALPFLKNTVILLYPFAPLILLYGLSLALGWNFTHTLCSFY 254

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

RGD|621749 Unc50 "unc-50 homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 91/226 (40%), Positives = 140/226 (61%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    33 KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWL 92

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+TI +    D      I +++ V+    +  G +++T  WF++N YL +     +   
Sbjct:    93 CVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTLMWFISNKYLVKRQSRDY--- 149

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYL 202
               VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   FI  L+ N L++ A  YY Y+
Sbjct:   150 -DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLIAVGYYIYV 208

Query:   203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMY 248
              FLGY  LPFL+ T   LYP    IVL  + +  G+N +    + Y
Sbjct:   209 TFLGYSALPFLKNTVVLLYPFAPLIVLYGLSLALGWNFTHTLCSFY 254

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003723 "RNA binding" evidence=IMP;IDA

GO:0005637 "nuclear inner membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0007166 "cell surface receptor signaling pathway" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3ZBG6 UNC50 "Protein unc-50 homolog" [Bos taurus (taxid:9913)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 90/226 (39%), Positives = 140/226 (61%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    33 KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWL 92

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+TI +    D      I +++ V+    +  G +++T  WF++N YL +     +   
Sbjct:    93 CVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTLMWFISNKYLVKRQSRDY--- 149

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYL 202
               VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   FI  L+ N L++ A  YY Y+
Sbjct:   150 -DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYV 208

Query:   203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMY 248
              FLGY  LPFL+ T   LYP    I+L  + +  G+N +    + Y
Sbjct:   209 TFLGYSALPFLKNTVILLYPFAPLILLYGLSLALGWNFTHTLCSFY 254

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|I3LLY5 UNC50 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 90/226 (39%), Positives = 140/226 (61%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    33 KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSVWL 92

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+TI +    D      I +++ V+    +  G +++T  WF++N YL +     +   
Sbjct:    93 CVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTLMWFISNKYLVKRQSRDY--- 149

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYL 202
               VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   FI  L+ N L++ A  YY Y+
Sbjct:   150 -DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYV 208

Query:   203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMY 248
              FLGY  LPFL+ T   LYP    I+L  + +  G+N +    + Y
Sbjct:   209 TFLGYSALPFLKNTVILLYPFAPLILLYGLSLALGWNFTHMLCSFY 254

GO:0005794 "Golgi apparatus" evidence=IEA

MGI|MGI:1914637 Unc50 "unc-50 homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 90/226 (39%), Positives = 140/226 (61%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR+ +++QMD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    33 KYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWL 92

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+TI +    D      I +++ V+    +  G +++T  WF++N YL +     +   
Sbjct:    93 CVSTIGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLISTLMWFVSNKYLVKRQSRDY--- 149

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYL 202
               VEW YAFDVH N+F+P+ V+L+ I  +F++ +++   FI  L+ N L++ A  YY Y+
Sbjct:   150 -DVEWGYAFDVHLNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLIAVGYYIYV 208

Query:   203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMY 248
              FLGY  LPFL+ T   LYP    +VL  + +  G+N +    + Y
Sbjct:   209 TFLGYSALPFLKNTVILLYPFAPLMVLYGLSLALGWNFTHTLCSFY 254

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BW23 UNC50 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 89/226 (39%), Positives = 139/226 (61%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR++  + MD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    33 KYLRRLLHVRHMDFEFALWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSVWL 92

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+T+ +    D      I +++ V+    +  G ++AT  WF++N YL +     +   
Sbjct:    93 CVSTVGFGFVLDMGFFETIKLLLWVVFIDCVGVGLLIATLMWFISNKYLVKQQNRDY--- 149

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHGFIPVLLSNLLFMAAASYYHYL 202
               VEW YAFDVH N+F+P+ V+L+ I  +F++ +++ +  I   + N L++ A  YY Y+
Sbjct:   150 -DVEWGYAFDVHLNAFYPLLVILHFIQLFFINYVIIPNSVIGYFVGNTLWLIAIGYYIYV 208

Query:   203 NFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMY 248
              FLGY  LPFL+ T   LYP  + IVL  I +  G+N ++   + Y
Sbjct:   209 TFLGYSALPFLKNTAILLYPFALLIVLYLISLACGWNFTKMLCSFY 254

GO:0005794 "Golgi apparatus" evidence=IEA

ZFIN|ZDB-GENE-040426-907 unc50 "unc-50 homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 86/219 (39%), Positives = 139/219 (63%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             +YLRR++ ++QMD E+  WQML+L TSP+ VY++  Y KQTK+QWARDDPAF+V+ S+ L
Sbjct:    31 KYLRRLLHFRQMDFEFAVWQMLYLFTSPQKVYRNFHYRKQTKDQWARDDPAFLVLLSIWL 90

Query:    84 SVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVE 143
              V+T+ +    D      + +++ V+    +  G +++T  WF+TN YL +  PN    +
Sbjct:    91 CVSTVGFGLVLDMGFVETLTLLLWVVFIDCIGVGLLISTLMWFVTNKYLMKH-PNR---D 146

Query:   144 QRVEWLYAFDVHCNSFFPMFVMLYVIH-YFLSPLLMVHG--FIPVLLSNLLFMAAASYYH 200
               VEW YAFDVH N+F+P+ V+L+ +  +F++ ++++    F+   + N +++ A  YY 
Sbjct:   147 YDVEWGYAFDVHLNAFYPLLVILHFLQLFFINHVVVISSDWFLGYFVGNTMWLIAIGYYV 206

Query:   201 YLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFN 239
             Y+ FLGY  LPFL+ T   LYP  +  +L  + I  G+N
Sbjct:   207 YITFLGYSALPFLKNTVVLLYPFALLGLLYVLSISLGWN 245

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

WB|WBGene00006785 unc-50 [Caenorhabditis elegans (taxid:6239)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 92/229 (40%), Positives = 135/229 (58%)

Query:    24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLL 83
             ++ RR++  +QMD E+  WQML+L   P  VY++  Y K+TK+Q+ARDDPAF+V+ +L L
Sbjct:    66 RFTRRLVHIRQMDFEFALWQMLYLLIQPSKVYKNFIYRKRTKDQFARDDPAFLVLLALSL 125

Query:    84 SVATIAYCAAYD-HSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVV 142
               ++I Y  A          F + SV +   +  G ++AT  W+++N +LR+      V 
Sbjct:   126 LFSSIFYAYALGLEKIGFFTFFLWSVFV-DCIGVGVVIATVLWWVSNRFLRK------VR 178

Query:   143 EQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVH-GFIPVLLSNLLFMAAASYYHY 201
             +Q VEW Y FDVH N+FFPM ++L+VI   L P L+    F+ +LL N  +  AA YY Y
Sbjct:   179 DQDVEWGYCFDVHLNAFFPMLILLHVIVPILYPTLIDSPAFLSILLGNTFWFLAACYYVY 238

Query:   202 LNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFS 250
             + FLGY  LP L +T +FLYPI    +     +  G+N SR  +N Y S
Sbjct:   239 ITFLGYTALPILHKTQYFLYPISFIFMFFVATLTGGWNISRTALNFYHS 287

GO:0016021 "integral to membrane" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0030173 "integral to Golgi membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54DD7	UNC50_DICDI	No assigned EC number	0.4503	0.9960	0.9655	yes	no
O55227	UNC50_RAT	No assigned EC number	0.3966	0.8972	0.8764	yes	no
Q7ZUU1	UNC50_DANRE	No assigned EC number	0.3690	0.9407	0.9189	yes	no
Q9VHN5	UNC50_DROME	No assigned EC number	0.3588	0.9446	0.8690	yes	no
Q53HI1	UNC50_HUMAN	No assigned EC number	0.4008	0.8972	0.8764	yes	no
P87155	MUG16_SCHPO	No assigned EC number	0.3392	0.8774	0.9446	yes	no
P36125	GMH1_YEAST	No assigned EC number	0.3145	0.8814	0.8168	yes	no
Q3ZBG6	UNC50_BOVIN	No assigned EC number	0.3924	0.8972	0.8764	yes	no
Q9CQ61	UNC50_MOUSE	No assigned EC number	0.3924	0.8972	0.8764	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam05216	232	pfam05216, UNC-50, UNC-50 family	1e-109

>gnl|CDD|218505 pfam05216, UNC-50, UNC-50 family

 Score =  313 bits (805), Expect = e-109
 Identities = 111/232 (47%), Positives = 158/232 (68%)

Query: 19  NPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVI 78
               P+YLRR+ K +QMD E   WQM +LC +PK VY+ T Y KQTKNQWARDDPAF+V+
Sbjct: 1   TSRLPKYLRRLFKPRQMDFETALWQMFYLCVNPKKVYRSTYYRKQTKNQWARDDPAFLVL 60

Query: 79  CSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPN 138
            S+ L ++++A+  AY    +  I +++ ++   FL+ G ++AT  WF+ N YLR    +
Sbjct: 61  LSVFLVISSVAWGLAYGPGFSQIIKLILYMVFVDFLLVGLVIATVFWFVANRYLRASGGH 120

Query: 139 SHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASY 198
           SH  +QRVEW YAFDVHCN+FFP+FV+LYV+ +FL PLL+   FI + + N L++ A  Y
Sbjct: 121 SHASDQRVEWGYAFDVHCNAFFPIFVLLYVLQFFLLPLLIRDSFISLFVGNTLYLIALGY 180

Query: 199 YHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFS 250
           Y Y+ FLGY+ LPFL+ T F LYPI +  +L  + +L GFN +R+ ++ YF 
Sbjct: 181 YFYITFLGYNALPFLKNTQFLLYPIPLLFILYLLSLLFGFNVARHLVSFYFY 232

Gmh1p from S. cerevisiae is located in the Golgi membrane and interacts with ARF exchange factors. Length = 232

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF05216	231	UNC-50: UNC-50 family; InterPro: IPR007881 This fa	100.0
KOG3012	259	consensus Uncharacterized conserved protein [Funct	100.0
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	82.26

>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT

Probab=100.00  E-value=1.1e-109  Score=742.23  Aligned_cols=231  Identities=49%  Similarity=0.962  Sum_probs=227.7

Q ss_pred             CChhHHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCChH
Q 025409           20 PMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSAT   99 (253)
Q Consensus        20 ~~lp~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~   99 (253)
                      +++|+|+||++|++|||||+|+|||.+||++|||||||++||||||||||||||||+||+++++++||++||++|++|++
T Consensus         1 ~~~~~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVyr~~~yrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~s~~   80 (231)
T PF05216_consen    1 SKLPKYLRRLFKFRQMDFEFALWQMFYLCISPRKVYRNFYYRKQTKNQWARDDPAFLVLLSFFLVISSIAWGLAYSLSFW   80 (231)
T ss_pred             CChHHHHHHhcCchhccHHHHHHHHHHHHhCHHHHHHHhhhcccCCccccCCCccHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEEEeeecccCcchhHHHHHHHHHHHHHHHhhc
Q 025409          100 HAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMV  179 (253)
Q Consensus       100 ~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~LlPll~~  179 (253)
                      ++++++++||++||+++|++|||++|+++||+++++.+++|++||+|||+||||||||||||+|++|||+|++|+|++.+
T Consensus        81 ~~~~~~l~~v~vdfl~~G~~iAT~~w~~~Nr~l~~~~~~~~~~~~~VEW~Y~FDVHcNaFfp~~~~Lyv~Q~~LlP~l~~  160 (231)
T PF05216_consen   81 GILKLILWMVFVDFLLVGLIIATIFWFVANRFLRPSSSHSHSVEQDVEWGYCFDVHCNAFFPLFVLLYVLQFFLLPLLLK  160 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCceEEEEeeecchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999997777899999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhHhhhhhhcccccccccccceehhhhHHHHHHHHHHHHHhccchhHHHHHhhcC
Q 025409          180 HGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFS  250 (253)
Q Consensus       180 ~~~~s~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~l~~~sl~~g~N~s~~~~~~Yf~  250 (253)
                      |+|+|+++|||||++|++||+||||||||+||||+|||++|+|+++++++|++|+++|||+|++++++||+
T Consensus       161 ~~~~~~~~gNtLy~va~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~~~~~sl~~g~N~s~~~~~~Y~~  231 (231)
T PF05216_consen  161 PSFLSLLLGNTLYLVAIGYYFYITFLGYSALPFLKNTEVFLYPILLLAVLYILSLLFGFNLSKHLLSFYFY  231 (231)
T ss_pred             cchHHHHHhHHHHHHHHHHHHHHHHHhhccCchhhcchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.

>KOG3012 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-106  Score=718.60  Aligned_cols=233  Identities=48%  Similarity=0.878  Sum_probs=225.8

Q ss_pred             cCCCCCChhHHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHh
Q 025409           15 ASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAY   94 (253)
Q Consensus        15 ~~~~~~~lp~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~   94 (253)
                      +++ .++.-+|+||++|++|||||+|.|||.|||++|||||||++||||||||||||||||+|++++++++||++||+++
T Consensus        25 ~s~-~~ks~~~~RRL~k~~QMDfE~A~WqMl~L~~~P~kVYr~~~YrKQTKnQwARDDPaFlVl~s~~l~vssi~~a~~~  103 (259)
T KOG3012|consen   25 HSA-GAKSFKYLRRLFKFRQMDFEFALWQMLYLFTSPRKVYRNFHYRKQTKNQWARDDPAFLVLLSLLLVVSSIGWAYVL  103 (259)
T ss_pred             hhh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHHhChHHHHhHhhhhhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHh
Confidence            344 4456699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEEEeeecccCcchhHHHHHHHHHHHHH
Q 025409           95 DHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLS  174 (253)
Q Consensus        95 ~~~~~~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~Ll  174 (253)
                      ++|+.+++++++|||++||+++|++|||++|+++||+++|+.   +++|++|||+||||||||||||++++|||+|++|+
T Consensus       104 ~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~Nryl~k~~---~s~d~~vEW~YcFDVHcNsFfp~lvlLyvIq~fl~  180 (259)
T KOG3012|consen  104 DLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISNRYLRKRK---SSRDYDVEWGYCFDVHCNSFFPMLVLLYVIQLFLL  180 (259)
T ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---cccccceeeeeeeeehhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999874   78899999999999999999999999999999999


Q ss_pred             HHhhccchHHHHHHHHHHHHHHhHhhhhhhcccccccccccceehhhhHHHHHHHHHHHHHhccchhHHHHHhhcCC
Q 025409          175 PLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSW  251 (253)
Q Consensus       175 Pll~~~~~~s~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~l~~~sl~~g~N~s~~~~~~Yf~~  251 (253)
                      |++..|+|+|+++|||||++|++||+|+||+||++|||||||+.+|+|+++++++|++++..|||.++.++++|..+
T Consensus       181 plI~~~~fIslllgNtl~lva~~yY~ylTFlGY~~LPfLknt~~~L~Pi~~~~il~~isl~~gwn~~~~l~~fY~~r  257 (259)
T KOG3012|consen  181 PLILTDNFISLLLGNTLWLVAAGYYVYLTFLGYNALPFLKNTVFLLYPIPPLFILYLLSLALGWNFTKTLVNFYKYR  257 (259)
T ss_pred             HHHccccHHHHHHhhHHHHHHhhHhheeeeeccccchhhhcceeeeechHHHHHHHHHHHhccccchhhHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999765

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=82.26  E-value=7.1  Score=31.36  Aligned_cols=92  Identities=23%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEEEeeecccCcchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 025409          114 LITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFM  193 (253)
Q Consensus       114 l~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~LlPll~~~~~~s~~~gNtLyl  193 (253)
                      ++..++.|.+.|.+ .|.+..+.   +       +.=+|.+=+-|..|..+ ..++..++......       +....-.
T Consensus        74 ~i~~~i~~~~~~~~-~~~~gg~~---~-------~~~~~~~~~ya~~P~~~-~~~~~~~~~~~~~~-------~~~~~~~  134 (172)
T PF04893_consen   74 LIGWFILALILHLI-AKLFGGKG---S-------FKETFSVVGYALIPLLL-GSLISIILSLFFGP-------LSLLVII  134 (172)
T ss_pred             HHHHHHHHHHHHHH-HHHhCCCC---C-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHH
Confidence            45566666666664 55554321   1       11255566666777653 23333222222111       3334455


Q ss_pred             HHHhHhhhhhhcccccccccccceehhhhHH
Q 025409          194 AAASYYHYLNFLGYDVLPFLERTTFFLYPIG  224 (253)
Q Consensus       194 ia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~  224 (253)
                      ++..+..++...|..+.-=+++.+-.+..+.
T Consensus       135 l~~iw~~~l~~~gl~~~~~~~~~ka~~~~~~  165 (172)
T PF04893_consen  135 LFSIWSAYLLVIGLREVHRLSRGKAFLIVII  165 (172)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            6666777888888877766666655554444

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00