Citrus Sinensis ID: 025419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Secondary Structure (PSIPRED)
ccccccHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccccEEEcccccccccccEEEEccHHHHHHHHHcccccccEEEEEEEcEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccccccHHHHHHHcccccccccccccHEEEEccccccccccccccccccccccHHHHHHHHHHHHccccHcccccccEEcccccccccccccccccHcEEEEEEEEEEcccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHccccccEEEEEEEEEcHHHHHHHHHHHcccccccHEEccccccccccccEEEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLPRLSSVlrtlpsstapmARIIsratplpltrtssaaisflnspsisfkthrldasspskssslfgrgFRVLCRREEESVVRSSRKVFAEQRGYRKVRRRVAKSKQKELELNVSIciedelpddpevlNFAEMLRVNAPTLMKLAFDSlkdstyktrdtaiedaggfeSIELSILFCNNEFIRKHnkewrdedhatdvlymsqhvpelklplVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Flexible Loop (DISEMBL)
mlprlssvlrtlpsstapmarIISRATPLPLTRTSSAAISFLNSPSISFKthrldasspskssslfgrgFRVLCRreeesvvrssrkvfaeqrgyrkvrrrvakskqkelelnvsiciedelpdDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Low Complexity Region (SEG)
MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDAsspsksssLFGRGFrvlcrreeesvvrssrKVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Disordered region (IsUnstruct)
*****************************************************************FGRGFRVLCR**********************************LELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSL*
Disordered Region (DISOPRED)
********LRT*PS****************************************************GR**********************************************SICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Disordered Region (DISEMBL)
MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKT*************LFGRGFRVLCRR*******************************KELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Disordered Region (DISPRO)
*LPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTH*LDASSPSKSSSLFGRGFRVLCRREEE****************RKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSGVWGGVEKIVLERHLSVQYFLFSLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
296081586	570	unnamed protein product [Vitis vinifera]	0.766	0.340	0.624	3e-57
255550974	595	Phosphatase yidA, putative [Ricinus comm	0.750	0.319	0.546	7e-57
225429386	1499	PREDICTED: receptor-like protein kinase	0.505	0.085	0.734	1e-51
356552642	581	PREDICTED: uncharacterized protein LOC10	0.798	0.347	0.557	2e-50
147856469	532	hypothetical protein VITISV_042331 [Viti	0.707	0.336	0.615	8e-50
224142850	574	predicted protein [Populus trichocarpa]	0.505	0.222	0.694	3e-47
357436339	377	hypothetical protein MTR_1g007320 [Medic	0.715	0.480	0.517	4e-44
30682927	584	haloacid dehalogenase-like hydrolase dom	0.723	0.313	0.551	3e-42
449502862	613	PREDICTED: uncharacterized LOC101219624	0.509	0.210	0.705	3e-42
3643597	343	hypothetical protein [Arabidopsis thalia	0.660	0.486	0.582	4e-42

>gi|296081586|emb|CBI20591.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 148/197 (75%), Gaps = 3/197 (1%)

Query: 19  MARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREE 78
           MAR++S A+PLP     SAA  F+++ S S  +     SSPS  SS+FG  FR++CR  E
Sbjct: 1   MARVLSHASPLPCPSPPSAA--FVSNLSFSHSSIPFQISSPSPKSSIFGAAFRLVCRENE 58

Query: 79  ESVVRSSRKVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVN 138
               R  R + A QRGYRK+RRR AKSK KELEL V ICIE+ELPDDPE+LN AEMLR++
Sbjct: 59  RFSKRFGR-ILASQRGYRKLRRRPAKSKAKELELGVKICIEEELPDDPEILNIAEMLRLD 117

Query: 139 APTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATD 198
            P  MKLAF+ +KDS YKTRDT I D GGFE++ELS+L CN+EFIRK NKEWRDEDHATD
Sbjct: 118 VPIAMKLAFEGIKDSEYKTRDTTISDLGGFENVELSVLLCNDEFIRKLNKEWRDEDHATD 177

Query: 199 VLYMSQHVPELKLPLVF 215
           VL MSQH+PELKLP++ 
Sbjct: 178 VLSMSQHIPELKLPILM 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550974|ref|XP_002516535.1| Phosphatase yidA, putative [Ricinus communis] gi|223544355|gb|EEF45876.1| Phosphatase yidA, putative [Ricinus communis]

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 118/216 (54%), Positives = 151/216 (69%), Gaps = 26/216 (12%)

Query: 1   MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPS 60
           MLPRLS +LR    S+ PMAR++ RAT LP T T+ ++ S L+ P   F           
Sbjct: 29  MLPRLSPLLR----SSTPMARVLLRATSLPFT-TAISSFSTLSFPKTHF----------- 72

Query: 61  KSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYRKVRRR-VAKSKQKELELNVSICIE 119
              S F + F     R +E       +V+A  RGYRK+RRR V ++K+ EL+++VSICIE
Sbjct: 73  ---SSFPKQFHAFSERNKEI------RVWAAHRGYRKLRRRAVPRTKENELQIDVSICIE 123

Query: 120 DELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCN 179
           D+LPDDPE+L+ +E+LR+N P  MKLAFD LKDS YKTRDTAI D GGF+S+ELS+L CN
Sbjct: 124 DDLPDDPEILSISELLRLNVPMAMKLAFDGLKDSNYKTRDTAISDIGGFQSVELSVLLCN 183

Query: 180 NEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVF 215
           ++FIRK NK+WRDEDHATDVL MSQHVP LKLP++ 
Sbjct: 184 DDFIRKLNKDWRDEDHATDVLSMSQHVPGLKLPVLM 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429386|ref|XP_002278343.1| PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 109/128 (85%)

Query: 88   VFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAF 147
            + A QRGYRK+RRR AKSK KELEL V ICIE+ELPDDPE+LN AEMLR++ P  MKLAF
Sbjct: 996  LLASQRGYRKLRRRPAKSKAKELELGVKICIEEELPDDPEILNIAEMLRLDVPIAMKLAF 1055

Query: 148  DSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP 207
            + +KDS YKTRDT I D GGFE++ELS+L CN+EFIRK NKEWRDEDHATDVL MSQH+P
Sbjct: 1056 EGIKDSEYKTRDTTISDLGGFENVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHIP 1115

Query: 208  ELKLPLVF 215
            ELKLP++ 
Sbjct: 1116 ELKLPILM 1123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552642|ref|XP_003544672.1| PREDICTED: uncharacterized protein LOC100810101 [Glycine max]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 143/217 (65%), Gaps = 15/217 (6%)

Query: 1   MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPS 60
           +LPR S +LR  P   A MAR ++ AT  P    +S  I+          T R   S PS
Sbjct: 2   LLPRFSYLLRHPPPLHA-MARAVTCATQ-PSHFHASLGIA----------TSRHPVSLPS 49

Query: 61  KSSSLFGRGFRVLCR-REEESVVRSSRKVFAEQRGYRKVRRRVA-KSKQKELELNVSICI 118
           KSS LF R F  L R + EE   R    V A QR YRK RRR   KSK KEL+L V ICI
Sbjct: 50  KSS-LFCRTFHALARCQSEEMTRRRVAGVRAGQREYRKARRRAPPKSKGKELQLCVDICI 108

Query: 119 EDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFC 178
           E++LPDDPE+L+ AE+LR+N P  MKL FD LK S YKTRDTAI D GGF+S+ELS+L C
Sbjct: 109 EEDLPDDPEILSIAELLRLNVPMAMKLVFDGLKGSRYKTRDTAISDVGGFDSVELSVLLC 168

Query: 179 NNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVF 215
           N+EFIRK NKEWR+ED ATDVL MSQHVP LK+P++ 
Sbjct: 169 NDEFIRKLNKEWRNEDRATDVLSMSQHVPGLKIPILM 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856469|emb|CAN80775.1| hypothetical protein VITISV_042331 [Vitis vinifera]

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 112/182 (61%), Positives = 135/182 (74%), Gaps = 3/182 (1%)

Query: 19  MARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREE 78
           MAR++S A+PLP     SAA  F+++ S S  +     SSPS  SS+FG  FR++CR  E
Sbjct: 1   MARVLSHASPLPCPSPPSAA--FVSNLSFSHSSIPFQISSPSPKSSIFGAAFRLVCRENE 58

Query: 79  ESVVRSSRKVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVN 138
               R  R + A QRGYRK+RRR AKSK KELEL V ICIE+ELPDDPE+LN AEMLR++
Sbjct: 59  RFSKRFGR-ILASQRGYRKLRRRPAKSKAKELELGVKICIEEELPDDPEILNIAEMLRLD 117

Query: 139 APTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATD 198
            P  MKLAF+ LKDS YKTRDT I D GGFE++ELS+L CN+EFIRK NKEWRDEDHATD
Sbjct: 118 VPIAMKLAFEGLKDSEYKTRDTTISDLGGFENVELSVLLCNDEFIRKLNKEWRDEDHATD 177

Query: 199 VL 200
           ++
Sbjct: 178 LM 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142850|ref|XP_002324751.1| predicted protein [Populus trichocarpa] gi|222866185|gb|EEF03316.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 110/131 (83%), Gaps = 3/131 (2%)

Query: 88  VFAEQRGYRKVRRRVA---KSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMK 144
           V+A  RGYRKVR+R A   +SK+K+LEL+VSICIE+ LP+DPE+L+ AE+LR+N PT MK
Sbjct: 68  VWASHRGYRKVRQRPAAARRSKEKDLELSVSICIEEGLPNDPEILSIAELLRLNVPTAMK 127

Query: 145 LAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQ 204
           LAFDSLK ST+KTRD  I D GGF+SIELS++ CN+EFIRK NKEWRDEDHATDVL MSQ
Sbjct: 128 LAFDSLKSSTFKTRDETITDVGGFDSIELSVMLCNDEFIRKLNKEWRDEDHATDVLSMSQ 187

Query: 205 HVPELKLPLVF 215
           HVP L LP++ 
Sbjct: 188 HVPGLDLPILM 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436339|ref|XP_003588445.1| hypothetical protein MTR_1g007320 [Medicago truncatula] gi|355477493|gb|AES58696.1| hypothetical protein MTR_1g007320 [Medicago truncatula]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 126/197 (63%), Gaps = 16/197 (8%)

Query: 19  MARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREE 78
           M+R I+ + P P    SS ++SF NS    F      ++SP +      R    L  ++ 
Sbjct: 1   MSRAITCSLPQP---HSSYSVSFNNSSVFPF------SNSPPR------RILFALFAQQP 45

Query: 79  ESVVRSSRKVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVN 138
           +            +R YRK R R  K K KELEL+V ICIE+ LPDDPE+LN AEMLR+N
Sbjct: 46  QPFRGVRAAGGGGKREYRKFRSRAPKRK-KELELSVPICIEESLPDDPEILNIAEMLRLN 104

Query: 139 APTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATD 198
            P  MKLAFD LK S YKTRDTAI+D G FES+ELS+L CN+EFI+K N+EWRDEDHATD
Sbjct: 105 VPMAMKLAFDGLKGSEYKTRDTAIDDVGRFESVELSVLLCNDEFIQKLNREWRDEDHATD 164

Query: 199 VLYMSQHVPELKLPLVF 215
           VL MSQH P L LP++ 
Sbjct: 165 VLSMSQHEPGLNLPILM 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682927|ref|NP_850072.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|20466676|gb|AAM20655.1| unknown protein [Arabidopsis thaliana] gi|26452541|dbj|BAC43355.1| unknown protein [Arabidopsis thaliana] gi|133778884|gb|ABO38782.1| At2g25870 [Arabidopsis thaliana] gi|330252671|gb|AEC07765.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/203 (55%), Positives = 138/203 (67%), Gaps = 20/203 (9%)

Query: 20  ARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREEE 79
           AR + RAT L L        +F +S   +   +RLD +S S+ SS+F R F  L      
Sbjct: 19  AREMPRATLLLLQP------NFFHSSPKTALVNRLDVTS-SEFSSMFRRSFHAL-----R 66

Query: 80  SVVRSSRK-------VFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFA 132
           S V   RK       VFAE+R YRK+RRR  K KQ ELEL+VSICIE++LPDD E+ N A
Sbjct: 67  STVGDWRKLPKPPGQVFAERREYRKIRRRAPKKKQ-ELELSVSICIEEQLPDDLEIQNIA 125

Query: 133 EMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRD 192
           EMLR+N P  M LAF+ LKDS YKTR+T IED GG+E++ELS++ CN++FI K NKEWR 
Sbjct: 126 EMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYETVELSVMLCNDDFICKLNKEWRG 185

Query: 193 EDHATDVLYMSQHVPELKLPLVF 215
           EDHATDVL MSQHVPELKLP++ 
Sbjct: 186 EDHATDVLSMSQHVPELKLPVLM 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502862|ref|XP_004161764.1| PREDICTED: uncharacterized LOC101219624 [Cucumis sativus]

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 108/129 (83%)

Query: 87  KVFAEQRGYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLA 146
           ++F  QR YRKVRRRV K K KELELNVSICIE+ELPDDPEVL+ AEMLR+N P  +K A
Sbjct: 109 RIFCGQREYRKVRRRVPKRKIKELELNVSICIEEELPDDPEVLSIAEMLRLNVPKALKFA 168

Query: 147 FDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHV 206
            ++LKDS YKTRD +I+D G F+S+ELS+L CN++FI K NKEWRDEDHATDVL MSQHV
Sbjct: 169 LNNLKDSEYKTRDNSIDDVGLFDSVELSVLLCNDDFICKLNKEWRDEDHATDVLSMSQHV 228

Query: 207 PELKLPLVF 215
           PELKLP++ 
Sbjct: 229 PELKLPILM 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3643597|gb|AAC42244.1| hypothetical protein [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/182 (58%), Positives = 130/182 (71%), Gaps = 15/182 (8%)

Query: 41  FLNSPSISFKTHRLDASSPSKSSSLFGRGFRVLCRREEESVVRSSRK-------VFAEQR 93
           F +SP  +   +RLD +S S+ SS+F R F  L      S V   RK       VFAE+R
Sbjct: 14  FHSSPKTAL-VNRLDVTS-SEFSSMFRRSFHAL-----RSTVGDWRKLPKPPGQVFAERR 66

Query: 94  GYRKVRRRVAKSKQKELELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
            YRK+RRR  K KQ ELEL+VSICIE++LPDD E+ N AEMLR+N P  M LAF+ LKDS
Sbjct: 67  EYRKIRRRAPKKKQ-ELELSVSICIEEQLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDS 125

Query: 154 TYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPL 213
            YKTR+T IED GG+E++ELS++ CN++FI K NKEWR EDHATDVL MSQHVPELKLP+
Sbjct: 126 KYKTRETDIEDLGGYETVELSVMLCNDDFICKLNKEWRGEDHATDVLSMSQHVPELKLPV 185

Query: 214 VF 215
           + 
Sbjct: 186 LM 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2043535	584	AT2G25870 [Arabidopsis thalian	0.810	0.351	0.509	2.4e-44

TAIR|locus:2043535 AT2G25870 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 110/216 (50%), Positives = 136/216 (62%)

Query:     1 MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTHRLDAXXXX 60
             ML R+   LR     +A  AR + RAT L L         F +SP  +   +RLD     
Sbjct:     1 MLSRVCPTLRYNRIWSAH-AREMPRATLLLLQPNF-----FHSSPKTAL-VNRLDVTSSE 53

Query:    61 XXXXLFGRGFXXXXXXXXXXXXXXX--XKVFAEQRGYRKVRRRVAKSKQKELELNVSICI 118
                 +F R F                  +VFAE+R YRK+RRR  K KQ ELEL+VSICI
Sbjct:    54 FSS-MFRRSFHALRSTVGDWRKLPKPPGQVFAERREYRKIRRRAPKKKQ-ELELSVSICI 111

Query:   119 EDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFC 178
             E++LPDD E+ N AEMLR+N P  M LAF+ LKDS YKTR+T IED GG+E++ELS++ C
Sbjct:   112 EEQLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYETVELSVMLC 171

Query:   179 NNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLV 214
             N++FI K NKEWR EDHATDVL MSQHVPELKLP++
Sbjct:   172 NDDFICKLNKEWRGEDHATDVLSMSQHVPELKLPVL 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       229   0.00082  113 3  11 22  0.36    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  174 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.62u 0.12s 18.74t   Elapsed:  00:00:01
  Total cpu time:  18.62u 0.12s 18.74t   Elapsed:  00:00:01
  Start:  Fri May 10 08:11:29 2013   End:  Fri May 10 08:11:30 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016311 "dephosphorylation" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0016791 "phosphatase activity" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
PLN02887	580	PLN02887, PLN02887, hydrolase family protein	2e-72
PRK00016	159	PRK00016, PRK00016, metal-binding heat shock prote	4e-08
TIGR00043	110	TIGR00043, TIGR00043, probable rRNA maturation fac	7e-08
pfam02130	142	pfam02130, UPF0054, Uncharacterized protein family	1e-07
COG0319	153	COG0319, COG0319, Predicted metal-dependent hydrol	9e-07

>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein

 Score =  230 bits (589), Expect = 2e-72
 Identities = 112/220 (50%), Positives = 139/220 (63%), Gaps = 23/220 (10%)

Query: 1   MLPRLSSVLRTLPSSTAPMARIISRATPLPLTRTSSAAISFLNSPSISFKTH-----RLD 55
           MLP LS V     S    + R+   A    +     AA   L   S+SF        RLD
Sbjct: 1   MLPMLSRV-----SLPLRLPRLFPAAAR-EMPP---AARLLLQPSSLSFSPKTSNFNRLD 51

Query: 56  ASSPSKSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYRKVRRR-VAKSKQKELELNV 114
            +S   SS  F +GF      +         +V+A  RGYRK+RRR     K++ELEL+V
Sbjct: 52  VTSTEFSS--FRKGFHAFRSTKPRG------RVWAAHRGYRKIRRRAPPPKKEQELELSV 103

Query: 115 SICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELS 174
           SICIE++LPDDPE+LN AE+LR+N P  MKLAFD LKDS YKTRDT I D GG++S+ELS
Sbjct: 104 SICIEEDLPDDPEILNIAELLRLNVPMAMKLAFDGLKDSKYKTRDTDISDVGGYDSVELS 163

Query: 175 ILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLV 214
           ++ CN++FIRK NKEWR EDHATDVL MSQHVP LKLP++
Sbjct: 164 VMLCNDDFIRKLNKEWRGEDHATDVLSMSQHVPGLKLPVL 203

Length = 580

>gnl|CDD|234575 PRK00016, PRK00016, metal-binding heat shock protein; Provisional

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
           ELSI   +NE IR+ N E+R +D  TDVL
Sbjct: 39  ELSIRLVDNEEIRELNLEYRGKDKPTDVL 67

Length = 159

>gnl|CDD|232796 TIGR00043, TIGR00043, probable rRNA maturation factor YbeY

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 16/30 (53%), Positives = 25/30 (83%)

Query: 171 IELSILFCNNEFIRKHNKEWRDEDHATDVL 200
            ELS+LF ++E I++ N+E+RD+D+ TDVL
Sbjct: 1   GELSLLFVDDEEIQELNREYRDKDYPTDVL 30

This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect [Protein synthesis, Other]. Length = 110

>gnl|CDD|216891 pfam02130, UPF0054, Uncharacterized protein family UPF0054

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
              ELSILF ++E IR+ N+E+R +D  TDVL
Sbjct: 31  IDSELSILFVDDEEIRELNREYRGKDKPTDVL 62

Length = 142

>gnl|CDD|223396 COG0319, COG0319, Predicted metal-dependent hydrolase [General function prediction only]

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 161 AIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
           A        + ELS++  ++  IR+ N E+R +D  TDVL
Sbjct: 28  AALKPEKISTAELSVVLVDDAEIRELNLEYRGKDKPTDVL 67

Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PLN02887	580	hydrolase family protein	100.0
COG0319	153	Predicted metal-dependent hydrolase [General funct	99.9
PRK13963	258	unkown domain/putative metalloprotease fusion prot	99.89
PF02130	145	UPF0054: Uncharacterized protein family UPF0054; I	99.86
PRK00016	159	metal-binding heat shock protein; Provisional	99.86
TIGR00043	110	metalloprotein, YbeY/UPF0054 family. This minimall	99.86
PLN02887	580	hydrolase family protein	96.87

>PLN02887 hydrolase family protein

Probab=100.00  E-value=6.3e-48  Score=379.36  Aligned_cols=194  Identities=51%  Similarity=0.817  Sum_probs=166.4

Q ss_pred             hhcccCCCCcccccCCCCCCC----CCCCCCcccccccccccccccccccchhhHhhhhhccccccCCC-ccccccceEE
Q 025419           38 AISFLNSPSISFKTHRLDASS----PSKSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYRKVRRRV-AKSKQKELEL  112 (253)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~a~~r~~rk~r~~~-~~~~~~~l~l  112 (253)
                      +..++.++++||.++.+-..+    +++.++ |.+|||.+++++.|      +|+||++|||||.|+|| |++|+.+++|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (580)
T PLN02887         29 ARLLLQPSSLSFSPKTSNFNRLDVTSTEFSS-FRKGFHAFRSTKPR------GRVWAAHRGYRKIRRRAPPPKKEQELEL  101 (580)
T ss_pred             hhhhcCccccccCCCCCCCccccCCCCchhh-HHHHHHHHhhcCcc------ccchhhhccCccccCCCCCCCcccceee
Confidence            334455556666553332211    123333 99999999999988      89999999999999985 7789999999


Q ss_pred             EEEEeecCCCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHHHHHHhC
Q 025419          113 NVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRD  192 (253)
Q Consensus       113 ~vqi~vE~~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~LN~eYRg  192 (253)
                      .|+|+||+++|+|+++.+++|+||+|+|+||+.|++++++|+|||||+.|++.++....||+|+||||++|++||++|||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~elsv~~~~d~~i~~LN~~yr~  181 (580)
T PLN02887        102 SVSICIEEDLPDDPEILNIAELLRLNVPMAMKLAFDGLKDSKYKTRDTDISDVGGYDSVELSVMLCNDDFIRKLNKEWRG  181 (580)
T ss_pred             eEEEeeccCCCCCHHHHHHHHHHhhccHHHHHHHhhhcccccccccchHHHhcCCCCceEEEEEEECHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEeeecCCCC------CCcccEEEeHHHHHHHHHhhCCCC-ccchhhh
Q 025419          193 EDHATDVLYMSQHVP------ELKLPLVFSLCHAKYCVSAYSGVW-GGVEKIV  238 (253)
Q Consensus       193 kD~pTDVLSFP~~ep------~lLGDIvIs~e~v~rQA~eY~~~~-~~~~~i~  238 (253)
                      ||+||||||||++++      .+|||||||+++|++||++|++.+ .++-.+.
T Consensus       182 ~d~~TDVLSF~~~~~~~~~~~~~lGDIvIs~~~~~~qA~e~~~s~~~el~~l~  234 (580)
T PLN02887        182 EDHATDVLSMSQHVPGLKLPVLMLGDIVISVETAARQAEERGHTLLDEIRILV  234 (580)
T ss_pred             CCCCCcEEeccCcCCCCCCCCccceEEEEeHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999998642      369999999999999999999543 3444333

>COG0319 Predicted metal-dependent hydrolase [General function prediction only]

Probab=99.90  E-value=1.9e-23  Score=177.14  Aligned_cols=61  Identities=28%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCC------CCcccEEEeHHHHHHHHHhhCC
Q 025419          169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP------ELKLPLVFSLCHAKYCVSAYSG  229 (253)
Q Consensus       169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep------~lLGDIvIs~e~v~rQA~eY~~  229 (253)
                      ...||||+||||++||+||++|||||+||||||||++++      .+|||||||.++|++||++||+
T Consensus        36 ~~~elsv~~vdd~ei~eLN~~yR~kD~pTDVLSFp~~e~~~~~~~~~LGDIvI~~~~~~~qA~e~g~  102 (153)
T COG0319          36 STAELSVVLVDDAEIRELNLEYRGKDKPTDVLSFPYNEPGEAGEPPLLGDIVICPEVAEEQAKEQGH  102 (153)
T ss_pred             CCceEEEEEeCHHHHHHHHHHHcCCCCCCceEEecCCCCCCCCCCccceeeEEcHHHHHHHHHHhCC
Confidence            468999999999999999999999999999999999753      3799999999999999999885

>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional

Probab=99.89  E-value=5e-23  Score=187.12  Aligned_cols=101  Identities=21%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             cccceEEEEEEeec------CCCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeC
Q 025419          106 KQKELELNVSICIE------DELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCN  179 (253)
Q Consensus       106 ~~~~l~l~vqi~vE------~~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVD  179 (253)
                      ..+.++|+||+..+      ..||+...+..|++       .++.                        ...||+|+|||
T Consensus       108 ~~~~l~l~vq~~~~~~~~~~~~lp~~~~i~~~i~-------~al~------------------------~~~eLsv~fVd  156 (258)
T PRK13963        108 REPELDLTVQYGDEIGGAQRKALPKRKLIAEWIE-------PALF------------------------ADAQLTVRFVG  156 (258)
T ss_pred             ccCceEEEEEeecccccccccCCCCHHHHHHHHH-------HHhC------------------------cCceEEEEEEC
Confidence            45568889998864      25888888888888       4431                        24799999999


Q ss_pred             HHHHHHHHHHHhCCCCCCcEeeecCCCC---CCcccEEEeHHHHHHHHHhhCC-CCccchhh
Q 025419          180 NEFIRKHNKEWRDEDHATDVLYMSQHVP---ELKLPLVFSLCHAKYCVSAYSG-VWGGVEKI  237 (253)
Q Consensus       180 d~eIr~LN~eYRgkD~pTDVLSFP~~ep---~lLGDIvIs~e~v~rQA~eY~~-~~~~~~~i  237 (253)
                      +++|++||++|||||+||||||||++++   .+|||||||.++|++||++|++ ++.++..+
T Consensus       157 deeir~LN~~YR~kD~pTDVLSFp~~e~~~~~~LGDIvIc~e~v~rqA~e~~~sl~~El~~L  218 (258)
T PRK13963        157 EEEGRTLNRGYRGKDYATNVLTFAYAEEPDGPVIGDLVLCCPVVEKEAREQGKPLEAHYAHL  218 (258)
T ss_pred             HHHHHHHHHHHcCCCCCCeEEeecCCCCCCCCcceeEEEEHHHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999999999999999999753   4799999999999999999984 33344333

>PF02130 UPF0054: Uncharacterized protein family UPF0054; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa

Probab=99.86  E-value=3.5e-22  Score=166.26  Aligned_cols=59  Identities=36%  Similarity=0.451  Sum_probs=49.8

Q ss_pred             eeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCCC---------CcccEEEeHHHHHHHHHhhCC
Q 025419          171 IELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPE---------LKLPLVFSLCHAKYCVSAYSG  229 (253)
Q Consensus       171 ~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep~---------lLGDIvIs~e~v~rQA~eY~~  229 (253)
                      .+|+|+|||+++|++||++|||+|+||||||||+.++.         .|||||||+++|.+||++|+.
T Consensus        35 ~el~i~fv~~~~i~~LN~~yr~~d~pTDVLSFp~~~~~~~~~~~~~~~lGdI~Is~~~~~~qA~e~~~  102 (145)
T PF02130_consen   35 FELSIVFVDDEEIRELNKQYRGKDYPTDVLSFPYDEPEEPISPLPFEYLGDIFISPDTAERQAEEYGH  102 (145)
T ss_dssp             CEEEEEEE-HHHHHHHHHHHHS-SSS-SEEEEE--SSSTTEE-E---EEEEEEEEHHHHHHHHHHCTS
T ss_pred             CeEEEEEECHHHHHHHHHHHcCCCCCCeEEeECCCCCcccccccccccCceEEECHHHHHHHHHHccC
Confidence            39999999999999999999999999999999997632         299999999999999999983

They contain a conserved region with three histidines at the C terminus. The protein family is represented by a single member sequence only in nearly every bacterium. The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions [].; GO: 0046872 metal ion binding; PDB: 1TVI_A 1OZ9_A 1XM5_A 1XAX_A.

>PRK00016 metal-binding heat shock protein; Provisional

Probab=99.86  E-value=1.3e-21  Score=165.71  Aligned_cols=72  Identities=25%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCC-----------CCcccEEEeHHHHHHHHHhhCCC-Cccchh
Q 025419          169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP-----------ELKLPLVFSLCHAKYCVSAYSGV-WGGVEK  236 (253)
Q Consensus       169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep-----------~lLGDIvIs~e~v~rQA~eY~~~-~~~~~~  236 (253)
                      ...+|+|+|||+++|++||++|||||+||||||||+++.           ..|||||||+++|.+||++|++. +.++-.
T Consensus        36 ~~~ev~i~~v~~~~i~~lN~~yr~~d~~TDVLSFp~~~~~~~~~~~~~~~~~LGDI~Is~~~~~~qa~~~~~s~~~e~~~  115 (159)
T PRK00016         36 PEAELSIRLVDNEEIRELNLEYRGKDKPTDVLSFPMDELPLLEDDGEEGPAYLGDIVICPEVAEEQAEEQGHSLERELAH  115 (159)
T ss_pred             CCeeEEEEEECcHHHHHHHHHHcCCCCCCcEEeccccccCccccccccCCcCceeEEEcHHHHHHHHHHcCCCHHHHHHH
Confidence            468999999999999999999999999999999999541           26999999999999999999844 445554


Q ss_pred             hhhc
Q 025419          237 IVLE  240 (253)
Q Consensus       237 i~l~  240 (253)
                      +..|
T Consensus       116 l~iH  119 (159)
T PRK00016        116 LTVH  119 (159)
T ss_pred             HHHH
Confidence            4444

>TIGR00043 metalloprotein, YbeY/UPF0054 family

Probab=99.86  E-value=4.5e-22  Score=159.83  Aligned_cols=70  Identities=33%  Similarity=0.409  Sum_probs=60.5

Q ss_pred             eeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCC--------CCcccEEEeHHHHHHHHHhhC-CCCccchhhhhc
Q 025419          171 IELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP--------ELKLPLVFSLCHAKYCVSAYS-GVWGGVEKIVLE  240 (253)
Q Consensus       171 ~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep--------~lLGDIvIs~e~v~rQA~eY~-~~~~~~~~i~l~  240 (253)
                      .+|+|+|||+++|++||++|||||+||||||||++++        ..||||+||+++|.+||.+|+ .++.++-.+..|
T Consensus         1 ~~vsi~~v~~~~i~~lN~~yr~~d~~TDVLSF~~~~~~~~~~~~~~~lGdI~Is~~~~~~qa~~~~~~~~~e~~~l~iH   79 (110)
T TIGR00043         1 GELSLLFVDDEEIQELNREYRDKDYPTDVLSFPYEEEEPPDGFPEEVLGDIVISLEVAKEQAKEYGHSLERELAHLTVH   79 (110)
T ss_pred             CEEEEEEECHHHHHHHHHHHhCCCCCCceEeecccCCcccccCCCCcceeEEEcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3799999999999999999999999999999999652        269999999999999999999 455555555544

This minimally protein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrates metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and somewhat more weakly to be a metalloproteinase.

>PLN02887 hydrolase family protein

Probab=96.87  E-value=0.00049  Score=69.37  Aligned_cols=74  Identities=24%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             HHHHhhhcC-CCCCCCCcchhhcccCCCCcccccCCCCCCCCC-CCCCcccccccccccccccccccchhhHhhhhhccc
Q 025419           19 MARIISRAT-PLPLTRTSSAAISFLNSPSISFKTHRLDASSPS-KSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYR   96 (253)
Q Consensus        19 mar~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~a~~r~~r   96 (253)
                      |++.+||++ |+|...++++++     .      +.|+++... ..++|.|++|+ .+.++.+.++++|.||+++.|.||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   68 (580)
T PLN02887          1 MLPMLSRVSLPLRLPRLFPAAA-----R------EMPPAARLLLQPSSLSFSPKT-SNFNRLDVTSTEFSSFRKGFHAFR   68 (580)
T ss_pred             CCccccccCCCCCCCCCCcccc-----C------CCChhhhhhcCccccccCCCC-CCCccccCCCCchhhHHHHHHHHh
Confidence            455667776 446666666665     1      333444333 34567999999 889999999999999999999999


Q ss_pred             --cccCCCcc
Q 025419           97 --KVRRRVAK  104 (253)
Q Consensus        97 --k~r~~~~~  104 (253)
                        |.|++.-.
T Consensus        69 ~~~~~~~~~~   78 (580)
T PLN02887         69 STKPRGRVWA   78 (580)
T ss_pred             hcCccccchh
Confidence              77776433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1oz9_A	150	Hypothetical protein AQ_1354; matrix metalloprotei	7e-10
1tvi_A	172	Hypothetical UPF0054 protein TM1509; alpha + beta,	3e-08
1xm5_A	155	Hypothetical UPF0054 protein YBEY; structural geno	3e-07
1xax_A	154	Hypothetical UPF0054 protein HI0004; structural ge	4e-07

>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15 Length = 150

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 151 KDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
           KD   K  + A+   G   ++ELS+   +++ IR+ NK +R +D  TDVL
Sbjct: 22  KDKIEKWAELALSALG-LNNVELSVYITDDQEIRELNKTYRKKDKPTDVL 70

>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15 Length = 172

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 133 EMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRD 192
            M+R+          ++LK+   +     I D        ++++  + + I++ N+++R 
Sbjct: 22  HMIRILGEGKGSKLLENLKEKLEEIVKKEIGDV------HVNVILVSEDEIKELNQQFRG 75

Query: 193 EDHATDVL 200
           +D  TDVL
Sbjct: 76  QDRPTDVL 83

>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15 Length = 155

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
           E  E++I   +       N  +R +D  T+VL
Sbjct: 37  EESEVTIRVVDTAESHSLNLTYRGKDKPTNVL 68

>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} Length = 154

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 30/95 (31%)

Query: 108 KELELNVSICIE--DELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDA 165
             + +++ I  E  + LP + +++ +A                            A++  
Sbjct: 2   GSVLVDLQIATENIEGLPTEEQIVQWAT--------------------------GAVQPE 35

Query: 166 GGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
           G    +E+++   +     + N  +R +D  T+VL
Sbjct: 36  G--NEVEMTVRIVDEAESHELNLTYRGKDRPTNVL 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
1xm5_A	155	Hypothetical UPF0054 protein YBEY; structural geno	99.92
1xax_A	154	Hypothetical UPF0054 protein HI0004; structural ge	99.92
1oz9_A	150	Hypothetical protein AQ_1354; matrix metalloprotei	99.91
1tvi_A	172	Hypothetical UPF0054 protein TM1509; alpha + beta,	99.91

>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15

Probab=99.92  E-value=4.1e-25  Score=185.95  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=80.0

Q ss_pred             ceEEEEEEeecC--CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHH
Q 025419          109 ELELNVSICIED--ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKH  186 (253)
Q Consensus       109 ~l~l~vqi~vE~--~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~L  186 (253)
                      ++.++||+.++.  .||++..+..|++       .|+...                     ....||+|+||||++|++|
T Consensus         3 ~~~l~iqi~~~~~~~~~~~~~~~~~~~-------~~l~~~---------------------~~~~elsv~~vdd~~i~~L   54 (155)
T 1xm5_A            3 QVILDLQLACEDNSGLPEESQFQTWLN-------AVIPQF---------------------QEESEVTIRVVDTAESHSL   54 (155)
T ss_dssp             EEEEEEEECSSSCCSCCCHHHHHHHHH-------TTSHHH---------------------HSEEEEEEEEECHHHHHHH
T ss_pred             ceEEEEEEecccccCCCCHHHHHHHHH-------HHHHhc---------------------CCCcEEEEEEECHHHHHHH
Confidence            367889998875  6898888998888       544431                     0368999999999999999


Q ss_pred             HHHHhCCCCCCcEeeecCCCC-----CCcccEEEeHHHHHHHHHhhCCC
Q 025419          187 NKEWRDEDHATDVLYMSQHVP-----ELKLPLVFSLCHAKYCVSAYSGV  230 (253)
Q Consensus       187 N~eYRgkD~pTDVLSFP~~ep-----~lLGDIvIs~e~v~rQA~eY~~~  230 (253)
                      |++|||||+||||||||++++     .+|||||||.++|++||++||+-
T Consensus        55 N~~yr~~d~pTDVLSFp~~~~~~~~~~~LGDIvIs~~~v~~qA~e~g~s  103 (155)
T 1xm5_A           55 NLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGKP  103 (155)
T ss_dssp             HHHHHCCSSCCSEEEEECCCCSSCCCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCCCeEEeECCCCCCCCCcccCccEEEcHHHHHHHHHHcCCC
Confidence            999999999999999999764     35999999999999999999843

>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}

Probab=99.92  E-value=4.3e-25  Score=185.66  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             ceEEEEEEeecC--CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHH
Q 025419          109 ELELNVSICIED--ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKH  186 (253)
Q Consensus       109 ~l~l~vqi~vE~--~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~L  186 (253)
                      .+.++||+.++.  .||++..+..|++       .|++.                   .  ....||+|+||||++|++|
T Consensus         3 ~~~l~i~i~~~~~~~~~~~~~~~~~~~-------~~l~~-------------------~--~~~~elsv~~vdd~~i~~L   54 (154)
T 1xax_A            3 SVLVDLQIATENIEGLPTEEQIVQWAT-------GAVQP-------------------E--GNEVEMTVRIVDEAESHEL   54 (154)
T ss_dssp             CEEEEEEECCSSCSSCCTHHHHHHHHH-------HHHSS-------------------S--CCCEEEEEEECCHHHHHHH
T ss_pred             ceEEEEEEecCcccCCCCHHHHHHHHH-------HHHHh-------------------c--CCCcEEEEEEECHHHHHHH
Confidence            367888988875  6888888888888       54331                   1  2468999999999999999


Q ss_pred             HHHHhCCCCCCcEeeecCCCC-----CCcccEEEeHHHHHHHHHhhCCC
Q 025419          187 NKEWRDEDHATDVLYMSQHVP-----ELKLPLVFSLCHAKYCVSAYSGV  230 (253)
Q Consensus       187 N~eYRgkD~pTDVLSFP~~ep-----~lLGDIvIs~e~v~rQA~eY~~~  230 (253)
                      |++|||||+||||||||++++     .+|||||||.++|++||++||+-
T Consensus        55 N~~yr~~d~pTDVLSFp~~~~~~~~~~~LGDIvIs~~~~~~qA~e~g~s  103 (154)
T 1xax_A           55 NLTYRGKDRPTNVLSFPFECPDEVELPLLGDLVICRQVVEREASEQEKP  103 (154)
T ss_dssp             HHHHTCCCSSCSEEEECCCCSSCCCCCCCBEEEECHHHHHHHHHHHTSC
T ss_pred             HHHHhCCCCCCeEEeECCCCCCCCCcccCccEEEcHHHHHHHHHHcCCC
Confidence            999999999999999999763     36999999999999999999843

>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15

Probab=99.91  E-value=1.1e-24  Score=182.12  Aligned_cols=61  Identities=26%  Similarity=0.314  Sum_probs=57.1

Q ss_pred             ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCC----CCCcccEEEeHHHHHHHHHhhCC
Q 025419          169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHV----PELKLPLVFSLCHAKYCVSAYSG  229 (253)
Q Consensus       169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~e----p~lLGDIvIs~e~v~rQA~eY~~  229 (253)
                      ...||+|+||||++|++||++|||||+||||||||+++    +.+|||||||+++|++||++||+
T Consensus        39 ~~~elsv~~vdd~~i~~LN~~yR~~d~pTDVLSFp~~e~~~~~~~LGDIvIs~~~v~~qA~e~g~  103 (150)
T 1oz9_A           39 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEFGGYKILGDVVISQDTAERQARELGH  103 (150)
T ss_dssp             CSEEEEEEEECHHHHHHHHHHHHSCCSCCSEEEEECCCEETTEEEEEEEEEEHHHHHHHHHHHTS
T ss_pred             CceEEEEEEECHHHHHHHHHHHhCCCCCCcEEeecCCCCCCCCcCceeEEEcHHHHHHHHHHhCC
Confidence            57899999999999999999999999999999999976    24799999999999999999985

>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15

Probab=99.91  E-value=4.3e-25  Score=189.32  Aligned_cols=88  Identities=14%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             EEEeecC-CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHHHHHHhC
Q 025419          114 VSICIED-ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRD  192 (253)
Q Consensus       114 vqi~vE~-~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~LN~eYRg  192 (253)
                      |+|.++. +||....+..|++       .+++.    +               +  ...||+|+||||++|++||++|||
T Consensus        24 i~i~~e~~~~~~~~~~~~~i~-------~~l~~----~---------------~--~~~Elsv~~vdd~~i~~LN~~yR~   75 (172)
T 1tvi_A           24 IRILGEGKGSKLLENLKEKLE-------EIVKK----E---------------I--GDVHVNVILVSEDEIKELNQQFRG   75 (172)
T ss_dssp             CEEEECSTTHHHHHHSHHHHH-------HHHHH----H---------------T--SCCCCEEEECCHHHHHHHHHTTTC
T ss_pred             eEEeecCCCccHHHHHHHHHH-------HHHHh----c---------------C--CCcEEEEEEECHHHHHHHHHHHhC
Confidence            5666666 6665556666666       44332    2               2  468999999999999999999999


Q ss_pred             CCCCCcEeeecCCCCCCcccEEEeHHHHHHHHHhhCC
Q 025419          193 EDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSG  229 (253)
Q Consensus       193 kD~pTDVLSFP~~ep~lLGDIvIs~e~v~rQA~eY~~  229 (253)
                      ||+||||||||++++++|||||||+++|++||++|++
T Consensus        76 kD~pTDVLSFp~~e~~~LGDIvIs~e~v~rqA~e~g~  112 (172)
T 1tvi_A           76 QDRPTDVLTFPLMEEDVYGEIYVCPLIVEENAREFNN  112 (172)
T ss_dssp             CCCCCSEECCCCCSSSCCSEEEECHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEecCCCCCCceeEEEcHHHHHHHHHHhCC
Confidence            9999999999998767999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1oz9a_	141	d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquif	2e-08
d1tvia_	150	d.92.1.15 (A:) Hypothetical protein TM1509 {Thermo	2e-08
d1xm5a_	152	d.92.1.15 (A:) Hypothetical protein YbeY {Escheric	3e-07

>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]} Length = 141

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Predicted metal-dependent hydrolase
domain: Hypothetical protein Aq 1354
species: Aquifex aeolicus [TaxId: 63363]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 167 GFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
           G  ++ELS+   +++ IR+ NK +R +D  TDVL
Sbjct: 30  GLNNVELSVYITDDQEIRELNKTYRKKDKPTDVL 63

>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Predicted metal-dependent hydrolase
domain: Hypothetical protein TM1509
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 8/57 (14%), Positives = 26/57 (45%)

Query: 171 IELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAY 227
           + ++++  + + I++ N+++R +D  TDVL       ++   +       +     +
Sbjct: 32  VHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLMEEDVYGEIYVCPLIVEENAREF 88

>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli [TaxId: 562]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Predicted metal-dependent hydrolase
domain: Hypothetical protein YbeY
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPE 208
           E  E++I   +       N  +R +D  T+VL     VP 
Sbjct: 37  EESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEVPP 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1xm5a_	152	Hypothetical protein YbeY {Escherichia coli [TaxId	99.9
d1oz9a_	141	Hypothetical protein Aq_1354 {Aquifex aeolicus [Ta	99.85
d1tvia_	150	Hypothetical protein TM1509 {Thermotoga maritima [	99.79

>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Predicted metal-dependent hydrolase
domain: Hypothetical protein YbeY
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6.1e-24  Score=176.06  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=80.2

Q ss_pred             cceEEEEEEeecC--CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHH
Q 025419          108 KELELNVSICIED--ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRK  185 (253)
Q Consensus       108 ~~l~l~vqi~vE~--~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~  185 (253)
                      .++.+++|+.+++  ++|++..+..|++       .++..    .                 ....+|+|.|||+++|++
T Consensus         2 ~~~~idi~~~~~~~~~lP~~~~i~~~l~-------~~l~~----~-----------------~~~~evsi~~v~~~~m~~   53 (152)
T d1xm5a_           2 SQVILDLQLACEDNSGLPEESQFQTWLN-------AVIPQ----F-----------------QEESEVTIRVVDTAESHS   53 (152)
T ss_dssp             CEEEEEEEECSSSCCSCCCHHHHHHHHH-------TTSHH----H-----------------HSEEEEEEEEECHHHHHH
T ss_pred             CceEEEEEEecCCccCCCCHHHHHHHHH-------HHHHh----c-----------------CCCeEEEEEEECHHHHHH
Confidence            4678899998887  6899989999998       44332    1                 135799999999999999


Q ss_pred             HHHHHhCCCCCCcEeeecCCCC-----CCcccEEEeHHHHHHHHHhhCC
Q 025419          186 HNKEWRDEDHATDVLYMSQHVP-----ELKLPLVFSLCHAKYCVSAYSG  229 (253)
Q Consensus       186 LN~eYRgkD~pTDVLSFP~~ep-----~lLGDIvIs~e~v~rQA~eY~~  229 (253)
                      ||++|||||+||||||||++++     ..+|||+||+++|.+||++|+.
T Consensus        54 LN~~yr~~d~~TDVLSFp~~~~~~~~~~~lGdI~I~~~~i~~~A~~~~~  102 (152)
T d1xm5a_          54 LNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK  102 (152)
T ss_dssp             HHHHHHCCSSCCSEEEEECCCCSSCCCCEEEEEEEEHHHHHHHHHHTTC
T ss_pred             HHHHHhccCCCcceEEeecccCCCCCcccccceEEeHHHHHHHHHHhCc
Confidence            9999999999999999999752     4699999999999999999984

>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Predicted metal-dependent hydrolase
domain: Hypothetical protein Aq 1354
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.85  E-value=2e-21  Score=158.82  Aligned_cols=61  Identities=26%  Similarity=0.314  Sum_probs=56.8

Q ss_pred             ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCC----CCCcccEEEeHHHHHHHHHhhCC
Q 025419          169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHV----PELKLPLVFSLCHAKYCVSAYSG  229 (253)
Q Consensus       169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~e----p~lLGDIvIs~e~v~rQA~eY~~  229 (253)
                      ...+|+|.|||+++|++||++|||+|+||||||||+++    +.++|||+||+++|.+||.+|+.
T Consensus        32 ~~~evsi~~v~~~~i~~LN~~yr~kd~~TDVLSFp~~~~~~~~~~lGdI~Is~~~i~~~a~~~~~   96 (141)
T d1oz9a_          32 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEFGGYKILGDVVISQDTAERQARELGH   96 (141)
T ss_dssp             CSEEEEEEEECHHHHHHHHHHHHSCCSCCSEEEEECCCEETTEEEEEEEEEEHHHHHHHHHHHTS
T ss_pred             CCeEEEEEEECHHHHHHHHHHHhCCCCCcceEEecccccccccccccchhccHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999975    24799999999999999999985

>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Predicted metal-dependent hydrolase
domain: Hypothetical protein TM1509
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.6e-20  Score=155.37  Aligned_cols=69  Identities=13%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             eeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCCCCcccEEEeHHHHHHHHHhhCC-CCccchhhh
Q 025419          170 SIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSG-VWGGVEKIV  238 (253)
Q Consensus       170 ~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep~lLGDIvIs~e~v~rQA~eY~~-~~~~~~~i~  238 (253)
                      ..+|+|.|||+++|++||++|||+|+||||||||+.++..+|||+||+++|.+||++|+. ++.++-.+.
T Consensus        31 ~~~i~i~~v~d~~m~~LN~~~r~~~~~TDVLSFp~~~~~~lGdI~i~~~~i~~~A~~~~~~~~~el~~l~  100 (150)
T d1tvia_          31 DVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLMEEDVYGEIYVCPLIVEENAREFNNTFEKELLEVV  100 (150)
T ss_dssp             CCCCEEEECCHHHHHHHHHTTTCCCCCCSEECCCCCSSSCCSEEEECHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CeEEEEEEECHHHHHHHHHHHhCCCCCcceEEeccccccccccceeehHHHHHHHHHhCchHHHHhHHHH
Confidence            578999999999999999999999999999999998888999999999999999999984 444444443