Citrus Sinensis ID: 025444

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Secondary Structure (PSIPRED)
cHHHHHHHccccccEEEccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccccEEcccccccccccccccHHHHHHHcccccccEEEcccccccHHHHHHHHHccccccEEEccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccEEEEEcccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHccHHHEEEcccccccccccccccHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEccccccccccHHHHHHHcHHHcEccccccccccccccccccccccccccccHHHHccccccccccHHHHHcccccccccHHcEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAgslqtlrlprsemsDSIVAQIAGRLSAVTFLDlsycskigAPALEAIGKHCKLLVVLCRnmhpldtadklsqdDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALlefldlrgcwdvklddkfmkgnfpnlkvlgpfvmdyyeindwddcsdysdgseYLAWEFLagemgdyddddeiyegmwddegrlEELELRFYdgieedagiygwppsp
Flexible Loop (DISEMBL)
MVEMLitrssgslRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDtadklsqddEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMkgnfpnlkvlgpFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIeedagiygwppsp
Low Complexity Region (SEG)
MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAgemgdyddddeiyegmWDDEGRleelelRFYDGIEEDAGIYGWPPSP
Disordered region (IsUnstruct)
************LRKLCVSGLHNDMMFSLIAENAGSLQTLRL******DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD******************PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGW****
Disordered Region (DISOPRED)
MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGI*GWP***
Disordered Region (DISEMBL)
********SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Disordered Region (DISPRO)
MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q9ZPE4	317	F-box protein FBW2 OS=Ara	yes	no	0.960	0.763	0.605	3e-79
Q9M0U9	302	F-box protein SKIP19 OS=A	no	no	0.658	0.549	0.327	2e-14
Q9FDX1	300	F-box protein SKIP1 OS=Ar	no	no	0.674	0.566	0.317	5e-13
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.682	0.383	0.298	7e-12
Q9M096	301	Putative F-box/LRR-repeat	no	no	0.615	0.514	0.263	2e-07
Q96IG2	436	F-box/LRR-repeat protein	yes	no	0.674	0.389	0.265	2e-05
Q58DG6	436	F-box/LRR-repeat protein	yes	no	0.674	0.389	0.265	2e-05
Q9CZV8	436	F-box/LRR-repeat protein	yes	no	0.674	0.389	0.265	2e-05
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.603	0.617	0.280	8e-05
Q9M0U6	307	Putative F-box/LRR-repeat	no	no	0.507	0.416	0.283	0.0003

>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1

 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 193/256 (75%), Gaps = 14/256 (5%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS
Sbjct: 72  MLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLS 131

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
           ++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKL
Sbjct: 132 SLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKL 191

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           KRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +
Sbjct: 192 KRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGF 251

Query: 181 YE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMWDDEGRLEELELRFY 236
           Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  +E  WDD    E   L   
Sbjct: 252 YDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FEHGWDDNFYAENAVL--- 306

Query: 237 DGIEEDAGIYGWPPSP 252
                D   + WPPSP
Sbjct: 307 -----DMEPHIWPPSP 317

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 8/174 (4%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRL 59
           M    + RS G L  + +       + + IA  + +L++LRL R S+++D    +   +L
Sbjct: 81  MCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKL 140

Query: 60  SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPK 119
             +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPK
Sbjct: 141 -PLEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPK 193

Query: 120 LKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 173
           L+ L++  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct: 194 LRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRL 59
           M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  ++D+ + +IA R 
Sbjct: 79  MLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRC 137

Query: 60  SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------PLDTADKLSQD-- 107
            ++  LD+SYC +I    L  IG++C  L +L RN+           P +  D   QD  
Sbjct: 138 RSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGD 197

Query: 108 DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167
            EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC  V L  + +  N 
Sbjct: 198 TEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC--VHLSSRDITSNV 255

Query: 168 PNLKVL 173
             LK L
Sbjct: 256 SRLKWL 261

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRL 59
           M    + RS G L ++ +     + +   IA+ + +L++L L R   ++D  VA+   ++
Sbjct: 243 MCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKV 302

Query: 60  SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPK 119
             + +L++SYC   G  +L  IG+ C  L  L  N  P         DD A AIA +MP+
Sbjct: 303 PLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPE 361

Query: 120 LKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 173
           L+ L++  + ++ + +  IL  C  LE LDLR C+++ L     K  F  +K L
Sbjct: 362 LRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDL 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 5   LITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVT 63
           ++ RS G L ++ +     +   S  AE   +L+ L +     ++D+ + +IA     + 
Sbjct: 95  VVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLR 153

Query: 64  FLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM------------HPLDTADKLSQ--DDE 109
            LD+SY   I   +L  +G+ C+ L +L RN+             PLD      +  + E
Sbjct: 154 ELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVAPLDYLATFPRYGNIE 213

Query: 110 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD 160
           A  I   M +LK LE+ Y  ++   +  +   C+ LE++DLRGC  +   D
Sbjct: 214 ARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSD 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 7/177 (3%)

Query: 4   MLITRSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLS 60
           + I R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A    
Sbjct: 240 ITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCH 299

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +  +DL  C +I    L  +  HC  L VL  +   L T D +         A    +L
Sbjct: 300 ELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNG---ACAHDQL 356

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKVLGPF 176
           + +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV   F
Sbjct: 357 EVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYF 413

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 7/177 (3%)

Query: 4   MLITRSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLS 60
           + I R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A    
Sbjct: 240 ITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCH 299

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +  +DL  C +I    L  +  HC  L VL  +   L T D +         A    +L
Sbjct: 300 ELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNG---ACAHDQL 356

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKVLGPF 176
           + +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV   F
Sbjct: 357 EVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYF 413

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 7/177 (3%)

Query: 4   MLITRSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLS 60
           + I R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A    
Sbjct: 240 ITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCH 299

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +  +DL  C +I    L  +  HC  L VL  +   L T D +         A    +L
Sbjct: 300 ELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNG---ACAHDQL 356

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKVLGPF 176
           + +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV   F
Sbjct: 357 EVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYF 413

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score = 47.8 bits (112), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 9   SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDL 67
           S G L ++ +  L N    + IA+ + +L+ L +   + +    V + A +L  +  LD+
Sbjct: 94  SQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDI 153

Query: 68  SYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY 127
           +Y S I    L+ +G+ C  L  L  N     T D    D  A AIA TMP L+ L++  
Sbjct: 154 TYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVALAIAETMPGLRHLQLFR 209

Query: 128 HVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 164
           + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct: 210 NGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U6|FBL22_ARATH Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=4 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 26  MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC 85
           + + +AE + +L+ LR+   +++   + +   +L  +  L+L YCS I     + IG+ C
Sbjct: 115 LLNYMAERSSNLRRLRVKGGQITSVGIFEAIVKLPLLEELELLYCS-IEEEHFKTIGQAC 173

Query: 86  KLLVVLCRNMHPLDTADKLSQ-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL 144
             L    + +  +     L++ D++A AIA TMP L  L++  + ++   +  IL  C  
Sbjct: 174 PNL----KTLKLVGFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPH 229

Query: 145 LEFLDLRGCWDVKL 158
           LE LDLR C+++ L
Sbjct: 230 LECLDLRQCFNINL 243

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
224063261	321	predicted protein [Populus trichocarpa]	0.988	0.775	0.732	7e-95
356508073	321	PREDICTED: F-box protein FBW2-like isofo	0.992	0.778	0.703	2e-88
449436998	318	PREDICTED: F-box protein FBW2-like [Cucu	0.984	0.779	0.658	2e-87
255545780	329	ubiquitin-protein ligase, putative [Rici	0.996	0.762	0.661	6e-85
225467167	317	PREDICTED: F-box protein FBW2 isoform 1	0.980	0.779	0.642	1e-83
18413178	317	F-box protein FBW2 [Arabidopsis thaliana	0.960	0.763	0.605	2e-77
297813231	317	F-box family protein [Arabidopsis lyrata	0.960	0.763	0.597	9e-77
359492882	296	PREDICTED: F-box protein FBW2 [Vitis vin	0.869	0.739	0.618	1e-74
242065902	365	hypothetical protein SORBIDRAFT_04g02735	0.980	0.676	0.569	4e-70
302141985	292	unnamed protein product [Vitis vinifera]	0.781	0.674	0.67	2e-68

>gi|224063261|ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|222842792|gb|EEE80339.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 186/254 (73%), Positives = 211/254 (83%), Gaps = 5/254 (1%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M++MLITRS GSLRKLCVSGLHND  FS +A++AGSLQTLR+PRS++ DSIV QIAGRLS
Sbjct: 71  MLQMLITRSCGSLRKLCVSGLHNDTNFSFLADHAGSLQTLRIPRSDIGDSIVEQIAGRLS 130

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            VTFLD+SYC+KI   ALEAIGKHCKLLV LCRNMHPLDT    +QDDEA AIA+TMPKL
Sbjct: 131 TVTFLDVSYCNKISGRALEAIGKHCKLLVGLCRNMHPLDTEGLEAQDDEAYAIATTMPKL 190

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM-D 179
           KRLEMAYH++STE +L+ILSSC  LEF+DLRGCW+V LD+KF K  F  L VLGP VM D
Sbjct: 191 KRLEMAYHLVSTESLLQILSSCTNLEFMDLRGCWNVNLDNKFFKEKFQKLTVLGPLVMED 250

Query: 180 YYEINDW-DDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDG 238
           YYE NDW +DCS+YSD S+YLAW FLA   G   DDDE Y+ MWDDEGRLEELELRFY+G
Sbjct: 251 YYEANDWEEDCSEYSDDSDYLAWGFLA-GDGGDYDDDESYDEMWDDEGRLEELELRFYEG 309

Query: 239 IEEDAGIYGWPPSP 252
              DAG+YGWPPSP
Sbjct: 310 A--DAGLYGWPPSP 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508073|ref|XP_003522785.1| PREDICTED: F-box protein FBW2-like isoform 1 [Glycine max] gi|356508075|ref|XP_003522786.1| PREDICTED: F-box protein FBW2-like isoform 2 [Glycine max]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/253 (70%), Positives = 204/253 (80%), Gaps = 3/253 (1%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           ++EMLITRSSGSLRKL VSGL  + +F+ IAENA SL TLRLPRS M+DSIV QIAGRLS
Sbjct: 71  LLEMLITRSSGSLRKLSVSGLQTESIFTFIAENACSLHTLRLPRSSMNDSIVEQIAGRLS 130

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            ++FLD+SYC KIG  ALE IGK+CKLL  LCRNMHPLDTA K  QDDEA AIASTMPKL
Sbjct: 131 MISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTASKPFQDDEAYAIASTMPKL 190

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           K LEMAYH+IST  VL+IL++C  LEFLD RGCW V LD  F+K  FP LKVLGPFV+D 
Sbjct: 191 KHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKLKVLGPFVLDT 250

Query: 181 YEINDWDDCSDYSDGSEYLAWEFLAGEMGD-YDDDDEIYEGMWDDEGRLEELELRFYDGI 239
           YE + WDD SD SD SEYLAW+F+AG M + Y DD + Y+GMWDDEGRL+EL+  FY+GI
Sbjct: 251 YESDGWDDFSDVSDSSEYLAWDFVAGGMEEYYVDDSDSYDGMWDDEGRLDELQFGFYEGI 310

Query: 240 EEDAGIYGWPPSP 252
            EDAG+Y WPPSP
Sbjct: 311 -EDAGMY-WPPSP 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436998|ref|XP_004136279.1| PREDICTED: F-box protein FBW2-like [Cucumis sativus] gi|449524052|ref|XP_004169037.1| PREDICTED: F-box protein FBW2-like isoform 1 [Cucumis sativus] gi|449524054|ref|XP_004169038.1| PREDICTED: F-box protein FBW2-like isoform 2 [Cucumis sativus] gi|449524056|ref|XP_004169039.1| PREDICTED: F-box protein FBW2-like isoform 3 [Cucumis sativus]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/252 (65%), Positives = 195/252 (77%), Gaps = 4/252 (1%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M++MLI RS GSLRKLCV+GLHN  +F  IA++AGSLQTLRLPRS +SD++  QIAGRL 
Sbjct: 71  MLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLC 130

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
           AVTFLDLSYC KI A  LE+IGK+CK LV +CRN+HPL TA   S DDEA  IA+TMPKL
Sbjct: 131 AVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEAYTIAATMPKL 190

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           K LEMAYH +ST+ +L ILSSC  LEFLDLRGC DV+LDDKF+   FP L+VLGP V D 
Sbjct: 191 KHLEMAYHPLSTKSLLTILSSCPDLEFLDLRGCGDVRLDDKFLAEKFPKLRVLGPLVRDV 250

Query: 181 YEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIE 240
           YE N+WD+ SDYS  SE LAW+F AG    Y DD   ++  WDDEGRLE LELRFY+G++
Sbjct: 251 YERNEWDEGSDYSYISEDLAWDFSAG----YFDDAGSFDDQWDDEGRLEGLELRFYEGVD 306

Query: 241 EDAGIYGWPPSP 252
           ED   +GWPPSP
Sbjct: 307 EDNEAFGWPPSP 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545780|ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547036|gb|EEF48533.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 208/260 (80%), Gaps = 9/260 (3%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+ MLI RS GSLRKLCVSG+ +D +F  +A++AGSLQTLR PRSE+SDSIV QIAGRLS
Sbjct: 71  MLRMLIARSCGSLRKLCVSGIPSDAIFPFLADHAGSLQTLRTPRSEISDSIVEQIAGRLS 130

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +TFLD+S+C++I A ALEAIGK+CKLL  LCRN+    +A++L QDDEA AIASTMPKL
Sbjct: 131 TITFLDVSHCNEISARALEAIGKNCKLLSGLCRNVELSSSANQLLQDDEAQAIASTMPKL 190

Query: 121 KRLEMAYH-VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMD 179
           K LE+AYH +I+TE VLKILSSC  LEFL+L GCWDVK D  F++  FP LKV+GP ++D
Sbjct: 191 KHLEVAYHLLINTESVLKILSSCPELEFLNLTGCWDVKFDRNFLQEKFPKLKVVGPHLLD 250

Query: 180 YYEINDWDD-CSD----YSDGSEYLAWEFLAGEM--GDYDDDDEIYEGMWDDEGRLEELE 232
           YY++NDW D CS+    YSD SEY AWE  +G+M   D DDDD+ Y+GMWDDE RLEELE
Sbjct: 251 YYDMNDWGDYCSEYSDAYSDASEYFAWEIFSGDMEDYDDDDDDDSYDGMWDDEQRLEELE 310

Query: 233 LRFYDGIEEDAGIYGWPPSP 252
           LRFY+G  EDAG+YGWP SP
Sbjct: 311 LRFYEG-NEDAGLYGWPLSP 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467167|ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera] gi|359496684|ref|XP_003635300.1| PREDICTED: F-box protein FBW2 isoform 2 [Vitis vinifera] gi|296085646|emb|CBI29445.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/252 (64%), Positives = 197/252 (78%), Gaps = 5/252 (1%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+EML+TRS+GS RKLCVSGL  D  FS +A++A SLQTLRLPRSE+SD IV ++A +LS
Sbjct: 71  MLEMLMTRSAGSHRKLCVSGLPTDASFSFVADHAKSLQTLRLPRSEISDPIVEEVAWKLS 130

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +TFLD+SYC K+GAPALEAIGKHCK L  L R MHPL+  DKL+QDDEA AIA+TMPKL
Sbjct: 131 TITFLDVSYCRKMGAPALEAIGKHCKFLTGLRRIMHPLEIIDKLTQDDEALAIAATMPKL 190

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           K LE+AY ++STE VLKIL+SC  LE LD+RGCW+VKLD+K +K  F  LKV+GP V+D 
Sbjct: 191 KHLEIAYLLVSTEPVLKILASCCELELLDVRGCWNVKLDEKLIK-KFSGLKVVGPLVIDC 249

Query: 181 YEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIE 240
           YE N WDDCS YS  S YLAW+F+AGEM  Y  DDE+Y   W+DE  +++LELRFYDG +
Sbjct: 250 YEGNGWDDCSAYSGSSGYLAWDFVAGEMDYY--DDELY-AAWEDES-MDDLELRFYDGFD 305

Query: 241 EDAGIYGWPPSP 252
            D   + WP SP
Sbjct: 306 ADNAGFDWPQSP 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413178|ref|NP_567343.1| F-box protein FBW2 [Arabidopsis thaliana] gi|30680931|ref|NP_849346.1| F-box protein FBW2 [Arabidopsis thaliana] gi|42572853|ref|NP_974523.1| F-box protein FBW2 [Arabidopsis thaliana] gi|145332987|ref|NP_001078359.1| F-box protein FBW2 [Arabidopsis thaliana] gi|238480265|ref|NP_001154215.1| F-box protein FBW2 [Arabidopsis thaliana] gi|75267749|sp|Q9ZPE4.1|FBW2_ARATH RecName: Full=F-box protein FBW2; AltName: Full=SKP1-interacting partner 18 gi|4325371|gb|AAD17367.1| contains similarity to Medicago truncatula N7 protein (GB:Y17613) [Arabidopsis thaliana] gi|7267540|emb|CAB78022.1| putative protein [Arabidopsis thaliana] gi|21536818|gb|AAM61150.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|27311651|gb|AAO00791.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|30984530|gb|AAP42728.1| At4g08980 [Arabidopsis thaliana] gi|222423880|dbj|BAH19904.1| AT4G08980 [Arabidopsis thaliana] gi|332657303|gb|AEE82703.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657304|gb|AEE82704.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657305|gb|AEE82705.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657306|gb|AEE82706.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657307|gb|AEE82707.1| F-box protein FBW2 [Arabidopsis thaliana]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 193/256 (75%), Gaps = 14/256 (5%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS
Sbjct: 72  MLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLS 131

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
           ++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKL
Sbjct: 132 SLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKL 191

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           KRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +
Sbjct: 192 KRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGF 251

Query: 181 YE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMWDDEGRLEELELRFY 236
           Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  +E  WDD    E   L   
Sbjct: 252 YDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FEHGWDDNFYAENAVL--- 306

Query: 237 DGIEEDAGIYGWPPSP 252
                D   + WPPSP
Sbjct: 307 -----DMEPHIWPPSP 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813231|ref|XP_002874499.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297320336|gb|EFH50758.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/256 (59%), Positives = 194/256 (75%), Gaps = 14/256 (5%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+EMLI RSSGSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS
Sbjct: 72  MLEMLIPRSSGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLS 131

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
           ++TFLDLSYC K+G  A++A+GKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKL
Sbjct: 132 SLTFLDLSYCCKVGPEAIQALGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKL 191

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           KRLE+AYH +STE VLKILSSC  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +
Sbjct: 192 KRLEIAYHRVSTEGVLKILSSCIFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGF 251

Query: 181 YE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMWDDEGRLEELELRFY 236
           Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  ++  WDD    +   L   
Sbjct: 252 YDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FDHGWDDNFNADNAIL--- 306

Query: 237 DGIEEDAGIYGWPPSP 252
                D   + WPPSP
Sbjct: 307 -----DMEPHIWPPSP 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492882|ref|XP_002285756.2| PREDICTED: F-box protein FBW2 [Vitis vinifera]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/244 (61%), Positives = 182/244 (74%), Gaps = 25/244 (10%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+E+LI RS GSLRKLCV GL ND + S IAE+AGSLQTL+L RSE+SDS+V +IAGR S
Sbjct: 70  MLEILIRRSCGSLRKLCVFGLQNDRLLSFIAEHAGSLQTLQLIRSEISDSLVEEIAGRFS 129

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +TFLD+S C+K+G+ ALEAIGK+CK LV LCRNMHPL TA KLSQD+EA+AIA+TMPKL
Sbjct: 130 TLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQDEEAHAIATTMPKL 189

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMD- 179
           K LEMAYH++ST+ VL+ILS C  LE LDLRGCW V+L+ KF+K  FP L+VLGP V+D 
Sbjct: 190 KHLEMAYHLLSTKSVLEILSCCPELELLDLRGCWHVELNVKFLKEKFPKLRVLGPVVVDY 249

Query: 180 --YYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYD 237
             YYE+N+ DD SDY                      DE  +G WDDEG LEELE+RFY+
Sbjct: 250 CRYYEMNECDDYSDY----------------------DESSDGTWDDEGGLEELEVRFYE 287

Query: 238 GIEE 241
           G  E
Sbjct: 288 GFGE 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065902|ref|XP_002454240.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor] gi|241934071|gb|EES07216.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor]

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 144/253 (56%), Positives = 177/253 (69%), Gaps = 6/253 (2%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           MVE+LI RS GS R++ VSGL  D +FS I +NA +L+TL +PRSE+SDSIV  +A RLS
Sbjct: 118 MVELLIGRSGGSCRRISVSGLPCDPLFSFIGDNARALRTLEIPRSEISDSIVETVAPRLS 177

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            VTFLD+S C+KIGA ALEA GKHCK LV L R MHP+D  DK+ Q DEA+AIA +MPKL
Sbjct: 178 NVTFLDISSCTKIGARALEAFGKHCKSLVGLRRVMHPIDLVDKVCQHDEAHAIACSMPKL 237

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
           + LEM Y +I+TE VL+IL  C  L+FLDLRGCW V  DDKF++   P L+VLGP V D 
Sbjct: 238 RHLEMGYMLIATEAVLEILGQCRDLKFLDLRGCWTV--DDKFLRERHPGLRVLGPRVDDC 295

Query: 181 YEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFY-DGI 239
           YE + W++CSDYSD S   +WEF+  +      DD   E +WDD   LE LE+RFY  G 
Sbjct: 296 YENSYWEECSDYSDDSSIYSWEFMDDDYYAVGSDD---EAIWDDGQGLENLEVRFYGGGF 352

Query: 240 EEDAGIYGWPPSP 252
            E    + WPPSP
Sbjct: 353 SESFAGFDWPPSP 365

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141985|emb|CBI19188.3| unnamed protein product [Vitis vinifera]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 163/200 (81%), Gaps = 3/200 (1%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
           M+E+LI RS GSLRKLCV GL ND + S IAE+AGSLQTL+L RSE+SDS+V +IAGR S
Sbjct: 70  MLEILIRRSCGSLRKLCVFGLQNDRLLSFIAEHAGSLQTLQLIRSEISDSLVEEIAGRFS 129

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +TFLD+S C+K+G+ ALEAIGK+CK LV LCRNMHPL TA KLSQD+EA+AIA+TMPKL
Sbjct: 130 TLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQDEEAHAIATTMPKL 189

Query: 121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMD- 179
           K LEMAYH++ST+ VL+ILS C  LE LDLRGCW V+L+ KF+K  FP L+VLGP V+D 
Sbjct: 190 KHLEMAYHLLSTKSVLEILSCCPELELLDLRGCWHVELNVKFLKEKFPKLRVLGPVVVDY 249

Query: 180 --YYEINDWDDCSDYSDGSE 197
             YYE+N+ DD SDY + S 
Sbjct: 250 CRYYEMNECDDYSDYDETSR 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2122308	317	FBW2 "AT4G08980" [Arabidopsis	0.960	0.763	0.585	1.1e-71
TAIR|locus:2115949	302	AT4G05460 "AT4G05460" [Arabido	0.658	0.549	0.327	7.7e-16
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.674	0.566	0.322	2e-14
TAIR|locus:2118736	301	AT4G30640 "AT4G30640" [Arabido	0.658	0.551	0.277	3.4e-07
TAIR|locus:2140715	220	AT4G03630 "AT4G03630" [Arabido	0.599	0.686	0.285	3.4e-07
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.662	0.383	0.284	2.2e-06
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.662	0.383	0.284	2.2e-06
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.662	0.383	0.284	2.2e-06
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.599	0.613	0.284	4.4e-06
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.650	0.388	0.286	4.8e-06

TAIR|locus:2122308 FBW2 "AT4G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 150/256 (58%), Positives = 184/256 (71%)

Query:     1 MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 60
             M+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS
Sbjct:    72 MLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLS 131

Query:    61 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
             ++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKL
Sbjct:   132 SLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKL 191

Query:   121 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDY 180
             KRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +
Sbjct:   192 KRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGF 251

Query:   181 YE-INDWDDC-SDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXXWDDEGRXXXXXXRFY- 236
             Y+ INDW+DC SDY SDGS+YLAWEF                  WDD          FY 
Sbjct:   252 YDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDEFEHG-WDDN---------FYA 301

Query:   237 DGIEEDAGIYGWPPSP 252
             +    D   + WPPSP
Sbjct:   302 ENAVLDMEPHIWPPSP 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010608 "posttranscriptional regulation of gene expression" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

TAIR|locus:2115949 AT4G05460 "AT4G05460" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 57/174 (32%), Positives = 92/174 (52%)

Query:     1 MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRL 59
             M    + RS G L  + +       + + IA  + +L++LRL R S+++D    +   +L
Sbjct:    81 MCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKL 140

Query:    60 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPK 119
               +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPK
Sbjct:   141 P-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPK 193

Query:   120 LKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 173
             L+ L++  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct:   194 LRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 60/186 (32%), Positives = 92/186 (49%)

Query:     1 MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRL 59
             M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  ++D+ + +IA R 
Sbjct:    79 MLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRC 137

Query:    60 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM------H----PLDTADKLSQDD- 108
              ++  LD+SYC +I    L  IG++C  L +L RN+      H    P +  D   QD  
Sbjct:   138 RSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGD 197

Query:   109 -EANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167
              EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC  V L  + +  N 
Sbjct:   198 TEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC--VHLSSRDITSNV 255

Query:   168 PNLKVL 173
               LK L
Sbjct:   256 SRLKWL 261

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2118736 AT4G30640 "AT4G30640" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 51/184 (27%), Positives = 86/184 (46%)

Query:     5 LITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVT 63
             ++ RS G L ++ +     +   S  AE   +L+ L +     ++D+ + +IA     + 
Sbjct:    95 VVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLR 153

Query:    64 FLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP-----LDTA----DKLSQ-----DDE 109
              LD+SY   I   +L  +G+ C+ L +L RN+ P     L T     D L+      + E
Sbjct:   154 ELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVAPLDYLATFPRYGNIE 213

Query:   110 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 169
             A  I   M +LK LE+ Y  ++   +  +   C+ LE++DLRGC  +   D  +  N   
Sbjct:   214 ARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSD--INTNTSG 271

Query:   170 LKVL 173
             LK L
Sbjct:   272 LKNL 275

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2140715 AT4G03630 "AT4G03630" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 44/154 (28%), Positives = 73/154 (47%)

Query:     6 ITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSI-VAQIAGRLSAVTF 64
             +  S G   ++ +     D + + IA+ + +L+ L L + +    + +   A +L  +  
Sbjct:    33 VALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEAMKLPLLED 92

Query:    65 LDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE 124
             L+LSYC  I    LEAIG  C  L  L  N          + D +A  IA  MP+L+ L+
Sbjct:    93 LELSYCL-IKGKNLEAIGFACLHLKTLKLNCQGFKFPG-FTYDHDALGIAKRMPELRCLQ 150

Query:   125 MAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 158
             +  + +S   +  I   C  LE LDLR C+++ L
Sbjct:   151 LFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINL 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/176 (28%), Positives = 82/176 (46%)

Query:     3 EMLIT--RSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAG 57
             E LIT  R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A 
Sbjct:   237 EGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296

Query:    58 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 117
                 +  +DL  C +I    L  +  HC  L VL  +   L T D +      N  A   
Sbjct:   297 NCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH--LGNG-ACAH 353

Query:   118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKV 172
              +L+ +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV
Sbjct:   354 DQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKV 409

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/176 (28%), Positives = 82/176 (46%)

Query:     3 EMLIT--RSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAG 57
             E LIT  R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A 
Sbjct:   237 EGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296

Query:    58 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 117
                 +  +DL  C +I    L  +  HC  L VL  +   L T D +      N  A   
Sbjct:   297 NCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH--LGNG-ACAH 353

Query:   118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKV 172
              +L+ +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV
Sbjct:   354 DQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKV 409

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/176 (28%), Positives = 82/176 (46%)

Query:     3 EMLIT--RSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAG 57
             E LIT  R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A 
Sbjct:   237 EGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296

Query:    58 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 117
                 +  +DL  C +I    L  +  HC  L VL  +   L T D +      N  A   
Sbjct:   297 NCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH--LGNG-ACAH 353

Query:   118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKV 172
              +L+ +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV
Sbjct:   354 DQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKV 409

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:     9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE--MSDSIVAQIAGRLSAVTFLD 66
             S G L ++ +  L N    + IA+ + +L+ L +      +S  +V + A +L  +  LD
Sbjct:    94 SQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV-EAAMKLPLLEELD 152

Query:    67 LSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA 126
             ++Y S I    L+ +G+ C  L  L  N     T D    D  A AIA TMP L+ L++ 
Sbjct:   153 ITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVALAIAETMPGLRHLQLF 208

Query:   127 YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 164
              + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct:   209 RNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 49/171 (28%), Positives = 78/171 (45%)

Query:     6 ITRSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAV 62
             I R    L+ LC+SG  N  D   + +A N   LQ L   R S ++D+    +A     +
Sbjct:   228 ICRGCHRLQALCLSGCSNLTDASLTALALNCPRLQILEAARCSHLTDAGFTLLARNCHDL 287

Query:    63 TFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKR 122
               +DL  C  I    L  +  HC  L  L  +   L T D +     +N+      +L+ 
Sbjct:   288 EKMDLEECILITDSTLIQLSVHCPKLQALSLSHCELITDDGILH--LSNSTCGH-ERLRV 344

Query:   123 LEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKV 172
             LE+   ++ T++ L+ L +C  LE L+L  C  V +   K M+   P++KV
Sbjct:   345 LELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKV 395

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPE4	FBW2_ARATH	No assigned EC number	0.6054	0.9603	0.7634	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	6e-06

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 33  NAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 91
           N   L+ L LP S  + D  +  +A     +  LDL  C  I    + A+  +C  L  +
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109

Query: 92  ----CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LE 146
                RN H       L  D   +A+      L+ +  A   ++ + V ++ S C+  LE
Sbjct: 110 NLGRHRNGH-------LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLE 162

Query: 147 FLDLRGCW---DVKLDDKFMKGNFPNLKVL 173
            L L  C    D  +        FPNL VL
Sbjct: 163 RLSLNNCRNLTDQSIPAILASNYFPNLSVL 192

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG4341	483	consensus F-box protein containing LRR [General fu	99.74
KOG4341	483	consensus F-box protein containing LRR [General fu	99.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.47
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.35
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.29
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.21
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.19
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.77
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.73
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.25
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.12
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.02
PLN03150	623	hypothetical protein; Provisional	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.39
KOG4308	478	consensus LRR-containing protein [Function unknown	96.27
PLN03150	623	hypothetical protein; Provisional	96.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.06
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.05
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.03
KOG4308	478	consensus LRR-containing protein [Function unknown	96.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.91
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	95.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.78
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.39
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.37
PRK15386	426	type III secretion protein GogB; Provisional	95.05
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	94.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.84
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.08
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.04
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.03
KOG0472	565	consensus Leucine-rich repeat protein [Function un	88.77
PRK15386	426	type III secretion protein GogB; Provisional	87.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	86.37
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	84.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.44
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	84.01
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	83.62

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.74  E-value=1.6e-18  Score=150.56  Aligned_cols=195  Identities=23%  Similarity=0.329  Sum_probs=156.7

Q ss_pred             CHHHHHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHH
Q 025444            1 MVEMLITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPA   77 (252)
Q Consensus         1 ~l~~~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~   77 (252)
                      |+...+.|+.+.|+.|++.||  ..+..+..++.+||+++.|++.+| +||+..+..+++.|++|++|++..|..+|+..
T Consensus       128 VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~  207 (483)
T KOG4341|consen  128 VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS  207 (483)
T ss_pred             ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence            456678888899999999998  558889999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHhhCchhhhhcccCee-------------------cccCCCCc-CcHHHHHHHhcCCCCcEEEecCcc-cCHHHHH
Q 025444           78 LEAIGKHCKLLVVLCRNMHP-------------------LDTADKLS-QDDEANAIASTMPKLKRLEMAYHV-ISTEIVL  136 (252)
Q Consensus        78 l~~l~~~~~~L~~L~~~l~~-------------------l~l~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~  136 (252)
                      ++.+++.||+|+.|+++..+                   +...||.- ..+.+..++..++-+.++++..|. |||+++.
T Consensus       208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  208 LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence            99999999999999664322                   22334443 334445566678888888888888 9999999


Q ss_pred             HHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceecc-------------Cccccccc--CCccccccCCCC
Q 025444          137 KILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP-------------FVMDYYEI--NDWDDCSDYSDG  195 (252)
Q Consensus       137 ~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~~-------------~~~~~~~~--~~~~~c~~~~d~  195 (252)
                      .+..+|..|+.|+.++|..++... ..+.+.|++|++|..             +.++|+.+  .+.++|....|.
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence            999999999999999998885444 577889999999842             23344444  355777777764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.71  E-value=8.2e-18  Score=146.20  Aligned_cols=169  Identities=22%  Similarity=0.348  Sum_probs=117.9

Q ss_pred             HHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 025444            5 LITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI   81 (252)
Q Consensus         5 ~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l   81 (252)
                      ...+.|+++++|.+.+|  ++|..+..+++.|++|+.|+|..| .+|+..++.++..|++|+.|++++|+.|+..+++++
T Consensus       158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            45677999999999998  789999999999999999999998 999999999999999999999999999999999999


Q ss_pred             HhhCchhhhhccc-------------------CeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHh
Q 025444           82 GKHCKLLVVLCRN-------------------MHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILS  140 (252)
Q Consensus        82 ~~~~~~L~~L~~~-------------------l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~  140 (252)
                      .++|+.++.+...                   +-.+++..|. ++|.++..++..|..|+.|..++|. +++..+.++.+
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~  317 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ  317 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence            9999988777321                   0111222332 4455555555455555555555544 55555555555


Q ss_pred             cCCCCCEEeccCCCCccCCh-HHHHhcCCCCcee
Q 025444          141 SCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVL  173 (252)
Q Consensus       141 ~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L  173 (252)
                      +|++|+.|-|++|.+.+..+ ..+...|+.|+.+
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l  351 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL  351 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence            55555555555555443333 3334444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.2e-15  Score=127.97  Aligned_cols=156  Identities=24%  Similarity=0.237  Sum_probs=107.5

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .+|++|+++.. ++-..+..|..+|.+|+.|+|.+..+.|.....++ +..+|+.|+|+.|+.+|..++..+..+|+.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            56888888885 67777888888999999999999988888877776 56889999999999999999999989999888


Q ss_pred             hhcccCeecccCCCCcCcHHHH-HHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhc
Q 025444           90 VLCRNMHPLDTADKLSQDDEAN-AIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN  166 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~  166 (252)
                      .|       +++.|....+.+. +++.--++|+.|+|+|+.  +.+..+..+.+.||+|..|||+.|..++.+-....-+
T Consensus       264 ~L-------NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  264 EL-------NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hc-------CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            88       4444544333333 333334666666666665  5555555555666666666666666554422222334


Q ss_pred             CCCCceec
Q 025444          167 FPNLKVLG  174 (252)
Q Consensus       167 ~~~L~~L~  174 (252)
                      ++.|++|.
T Consensus       337 f~~L~~lS  344 (419)
T KOG2120|consen  337 FNYLQHLS  344 (419)
T ss_pred             cchheeee
Confidence            55555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.7e-14  Score=121.08  Aligned_cols=158  Identities=20%  Similarity=0.317  Sum_probs=124.9

Q ss_pred             HHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhh
Q 025444            7 TRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH   84 (252)
Q Consensus         7 ~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~   84 (252)
                      -..|.+|+.|++.|. ..|.+...|+ ...+|+.|+|+.| +++..++..+...|+.|..|+|+.|...++..-.+++.-
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence            345899999999997 5666666677 5779999999999 999999999999999999999999988777754455555


Q ss_pred             CchhhhhcccCeecccCCCC--cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChH
Q 025444           85 CKLLVVLCRNMHPLDTADKL--SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDK  161 (252)
Q Consensus        85 ~~~L~~L~~~l~~l~l~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~  161 (252)
                      -++|++|       +++|+.  .....+..++++||+|.+|+|+.|. +++..+.+ +-+++.|++|.|+.|..+  ..+
T Consensus       285 se~l~~L-------NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i--~p~  354 (419)
T KOG2120|consen  285 SETLTQL-------NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI--IPE  354 (419)
T ss_pred             chhhhhh-------hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC--ChH
Confidence            6778887       445542  4455777888899999999999999 88854444 447999999999999888  553


Q ss_pred             HH--HhcCCCCceecc
Q 025444          162 FM--KGNFPNLKVLGP  175 (252)
Q Consensus       162 ~l--~~~~~~L~~L~~  175 (252)
                      .+  ....|.|.+|..
T Consensus       355 ~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  355 TLLELNSKPSLVYLDV  370 (419)
T ss_pred             HeeeeccCcceEEEEe
Confidence            33  456677777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.51  E-value=4.8e-14  Score=128.87  Aligned_cols=156  Identities=31%  Similarity=0.372  Sum_probs=123.4

Q ss_pred             HHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 025444            5 LITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI   81 (252)
Q Consensus         5 ~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l   81 (252)
                      .+...|++|+.|+++++  ++|..+..++..|++|+.|++.+| .+++.++..++.+|++|++|+|++|..+++.++..+
T Consensus       237 ~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~  316 (482)
T KOG1947|consen  237 LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL  316 (482)
T ss_pred             hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence            45667788999999887  578889999999999999998888 589999999999999999999999999999999999


Q ss_pred             HhhCchhhhhcccC-------eecccCCCCc-C-cHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCC-------
Q 025444           82 GKHCKLLVVLCRNM-------HPLDTADKLS-Q-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL-------  145 (252)
Q Consensus        82 ~~~~~~L~~L~~~l-------~~l~l~~~~~-~-~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L-------  145 (252)
                      +..|++|+.|.+..       ..+.+.++.. . +.....++..|++|+++.|.++.+++.++..++.+||+|       
T Consensus       317 ~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~  396 (482)
T KOG1947|consen  317 LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELR  396 (482)
T ss_pred             HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHH
Confidence            99999988875432       2233333332 2 355667778899999999998887777777778888877       


Q ss_pred             -------CEEeccCCCCccCCh
Q 025444          146 -------EFLDLRGCWDVKLDD  160 (252)
Q Consensus       146 -------~~LdL~~C~~i~~~~  160 (252)
                             +.|+++.|..++...
T Consensus       397 ~~~~~~l~~L~l~~~~~~t~~~  418 (482)
T KOG1947|consen  397 LCRSDSLRVLNLSDCRLVTDKG  418 (482)
T ss_pred             hccCCccceEecccCccccccc
Confidence                   677777777775444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.46  E-value=1.9e-13  Score=124.95  Aligned_cols=158  Identities=26%  Similarity=0.328  Sum_probs=94.9

Q ss_pred             CCccEEEecCC---CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccC-CCCCCHHH--HHHHHh
Q 025444           11 GSLRKLCVSGL---HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPA--LEAIGK   83 (252)
Q Consensus        11 ~~L~~L~l~~~---~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~-c~~i~~~~--l~~l~~   83 (252)
                      ..++.+....+   .....+..+...+++|+.|.+.+| .+++.++..++..+++|+.|++++ |..++..+  ...++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (482)
T KOG1947|consen  161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS  240 (482)
T ss_pred             HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence            33444444443   223445555555677777777776 666666666666677777777766 33333322  344555


Q ss_pred             hCchhhhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCCh-
Q 025444           84 HCKLLVVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD-  160 (252)
Q Consensus        84 ~~~~L~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-  160 (252)
                      .|++|+.|       ++..+. +++.++.+++..||+|++|.+.+|. +|+.++..+++.||+|++|+|++|..++..+ 
T Consensus       241 ~~~~L~~l-------~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l  313 (482)
T KOG1947|consen  241 ICRKLKSL-------DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL  313 (482)
T ss_pred             hcCCcCcc-------chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH
Confidence            56666555       333444 6666667777667777777766666 6777777777777777777777777664433 


Q ss_pred             HHHHhcCCCCceecc
Q 025444          161 KFMKGNFPNLKVLGP  175 (252)
Q Consensus       161 ~~l~~~~~~L~~L~~  175 (252)
                      ..+...|++++.|+.
T Consensus       314 ~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  314 EALLKNCPNLRELKL  328 (482)
T ss_pred             HHHHHhCcchhhhhh
Confidence            333455666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.35  E-value=2.1e-11  Score=105.92  Aligned_cols=67  Identities=21%  Similarity=0.185  Sum_probs=33.2

Q ss_pred             CCCccEEEecCCCC----HHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHH---hcC-CCccEEeccCCCCCCHHHH
Q 025444           10 SGSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIA---GRL-SAVTFLDLSYCSKIGAPAL   78 (252)
Q Consensus        10 ~~~L~~L~l~~~~~----d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~-~~L~~L~Ls~c~~i~~~~l   78 (252)
                      +++|+.|+++++.-    ...+..+... ++|++|++++|.+++.++..+.   ..+ ++|+.|++++|. ++..++
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~  154 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASC  154 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHH
Confidence            55666666666521    1222223333 4566666666666554433322   233 566666666653 443333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=4.2e-11  Score=103.97  Aligned_cols=158  Identities=22%  Similarity=0.210  Sum_probs=108.0

Q ss_pred             CCccEEEecCC-CCHHHHHHHH---HhC-CCCcEEEccCCCCCHHHH---HHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIA---ENA-GSLQTLRLPRSEMSDSIV---AQIAGRLSAVTFLDLSYCSKIGAPALEAIG   82 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~---~~~-~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~   82 (252)
                      ++|++|+++++ .++..+..+.   ..+ ++|++|.|.+|.++..+.   ......+++|++|++++| .+++.++..++
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHH
Confidence            67999999987 4444444332   345 899999999998885443   334456788999999996 57777777776


Q ss_pred             hhCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHhcC----CCCCEEeccCCCC
Q 025444           83 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRGCWD  155 (252)
Q Consensus        83 ~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~~~----~~L~~LdL~~C~~  155 (252)
                      ..++.+..|    +.++++++.+.+.++..++   ..+++|++|++++|.+++.++..++..+    ++|++|++++|. 
T Consensus       187 ~~l~~~~~L----~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-  261 (319)
T cd00116         187 EGLKANCNL----EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-  261 (319)
T ss_pred             HHHHhCCCC----CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-
Confidence            655522222    4446777777666655443   4578999999999999988888877764    799999999984 


Q ss_pred             ccCCh-HHHHhcC---CCCceec
Q 025444          156 VKLDD-KFMKGNF---PNLKVLG  174 (252)
Q Consensus       156 i~~~~-~~l~~~~---~~L~~L~  174 (252)
                      ++..+ ..+.+.+   ++|+.+.
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~  284 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELD  284 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEE
Confidence            43223 3343444   4455553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=6.2e-12  Score=107.65  Aligned_cols=143  Identities=21%  Similarity=0.204  Sum_probs=103.7

Q ss_pred             cCCCccEEEecCCC----CHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHH---HhcCCCccEEeccCCCCCCHHHHHHH
Q 025444            9 SSGSLRKLCVSGLH----NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAI   81 (252)
Q Consensus         9 ~~~~L~~L~l~~~~----~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~L~~L~Ls~c~~i~~~~l~~l   81 (252)
                      +.++||.+...+..    +...+..+.+.+|+|+.++++.+.|..+|+..+   +.+||+|+.|+|.++ .+|..+-.++
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~L  233 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVAL  233 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHH
Confidence            34677777776641    233455566777888888888888877766444   345888888888885 4777787888


Q ss_pred             HhhCchhhhhcccCeecccCCCCcCcHHHHHHH----hcCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCC
Q 025444           82 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA----STMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCW  154 (252)
Q Consensus        82 ~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~----~~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~  154 (252)
                      ++.+|.++.|    +.+++++|.+.+.++.+++    +..|+|+.|.+.||.||-++...+..   ..|.|++|+|++|.
T Consensus       234 akaL~s~~~L----~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  234 AKALSSWPHL----RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHhcccchh----eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            8877666655    6678888888888877665    34688899999998888777655443   56888899998886


Q ss_pred             Cc
Q 025444          155 DV  156 (252)
Q Consensus       155 ~i  156 (252)
                      .-
T Consensus       310 l~  311 (382)
T KOG1909|consen  310 LG  311 (382)
T ss_pred             cc
Confidence            53

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=6.9e-11  Score=101.29  Aligned_cols=75  Identities=21%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             cCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCCCccCCh----HHHHhcCCC
Q 025444          100 TADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDD----KFMKGNFPN  169 (252)
Q Consensus       100 l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~~i~~~~----~~l~~~~~~  169 (252)
                      +....+...++.+++   .+||+|+.|+|..|.+|.++-.++++   .+|+|+.|+++.|.--+...    +.+.+..|.
T Consensus       192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~  271 (382)
T KOG1909|consen  192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPS  271 (382)
T ss_pred             EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCC
Confidence            333444444443333   46899999999999988887666655   67788999999985443222    345667888


Q ss_pred             Cceec
Q 025444          170 LKVLG  174 (252)
Q Consensus       170 L~~L~  174 (252)
                      |++|.
T Consensus       272 L~vl~  276 (382)
T KOG1909|consen  272 LEVLE  276 (382)
T ss_pred             Cceec
Confidence            88886

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.3e-10  Score=102.20  Aligned_cols=149  Identities=23%  Similarity=0.216  Sum_probs=106.7

Q ss_pred             HHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh
Q 025444            6 ITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK   83 (252)
Q Consensus         6 i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~   83 (252)
                      +...|++++.|+|++.  -+-..+..|+..+|+|+.|+|+.|++....-......+++|+.|.|+.|. ++.+.+..+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~  219 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILL  219 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHH
Confidence            4566899999999985  33455778889999999999999844321111111247889999999985 78999999999


Q ss_pred             hCchhhhhccc-----------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH-----Hhc
Q 025444           84 HCKLLVVLCRN-----------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI-----LSS  141 (252)
Q Consensus        84 ~~~~L~~L~~~-----------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i-----~~~  141 (252)
                      .||+|+.|-+.                 ++.+++++....+.........+|+|+.|+++.|.|+.......     ...
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            99999998542                 23456666665555444444478888999888888776544322     457


Q ss_pred             CCCCCEEeccCCCC
Q 025444          142 CALLEFLDLRGCWD  155 (252)
Q Consensus       142 ~~~L~~LdL~~C~~  155 (252)
                      +|+|++|++.....
T Consensus       300 f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  300 FPKLEYLNISENNI  313 (505)
T ss_pred             cccceeeecccCcc
Confidence            88999999887544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.92  E-value=4.5e-09  Score=100.25  Aligned_cols=158  Identities=22%  Similarity=0.262  Sum_probs=111.5

Q ss_pred             HHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhh
Q 025444            7 TRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH   84 (252)
Q Consensus         7 ~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~   84 (252)
                      +.+..+|++|+++|-  .+..-...++..+|+|++|.+.+-.+....+..+..++|+|..||||++ +++.-  ..| .+
T Consensus       118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~  193 (699)
T KOG3665|consen  118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SR  193 (699)
T ss_pred             HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHH-hc
Confidence            446689999999994  3455678899999999999999987777779999999999999999994 56542  223 35


Q ss_pred             CchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHH-HHHHHHh---cCCCCCEEeccCCCCccC-
Q 025444           85 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTE-IVLKILS---SCALLEFLDLRGCWDVKL-  158 (252)
Q Consensus        85 ~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~-~l~~i~~---~~~~L~~LdL~~C~~i~~-  158 (252)
                      +++|+.|.+  +.+.+.    ....+..+. .+++|+.|++|... .+.. .+...++   .+|+|+.||.|+. .++. 
T Consensus       194 LknLq~L~m--rnLe~e----~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~  265 (699)
T KOG3665|consen  194 LKNLQVLSM--RNLEFE----SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEE  265 (699)
T ss_pred             cccHHHHhc--cCCCCC----chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHH
Confidence            677877743  222221    124455665 79999999999877 3332 2333332   7899999999973 3311 


Q ss_pred             ChHHHHhcCCCCceeccC
Q 025444          159 DDKFMKGNFPNLKVLGPF  176 (252)
Q Consensus       159 ~~~~l~~~~~~L~~L~~~  176 (252)
                      .-+.+.+..|+|+.+...
T Consensus       266 ~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  266 ILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHHHHHhCccHhhhhhh
Confidence            114556778888888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=8.6e-10  Score=97.14  Aligned_cols=154  Identities=19%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .+|+++.|.++ +.+......++.||+++.|+|+.|-++. ..+..++..+|+|+.|+|+.+. +....-.......++|
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhh
Confidence            45555555554 2222222344556666666666653333 4455555666666666665532 1110001111133344


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      ++|       .+.+|..+...+..++..+|+|+.|.|.+|. +......  .+....|+.|||++...++...-.....+
T Consensus       200 K~L-------~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  200 KQL-------VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             heE-------EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccc
Confidence            444       4556666666666666677777777777663 2221111  01234566666666555543322223344


Q ss_pred             CCCceec
Q 025444          168 PNLKVLG  174 (252)
Q Consensus       168 ~~L~~L~  174 (252)
                      |.|+.|.
T Consensus       271 ~~L~~Ln  277 (505)
T KOG3207|consen  271 PGLNQLN  277 (505)
T ss_pred             cchhhhh
Confidence            5555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=8.2e-10  Score=88.00  Aligned_cols=128  Identities=27%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      +.++++|+|.++.|+.  +..+...+.+|+.|++++|. |+.  +..+. .+++|+.|       .+++..+..-+ ..+
T Consensus        18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l~-~L~~L~~L-------~L~~N~I~~i~-~~l   83 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITK--LEGLP-GLPRLKTL-------DLSNNRISSIS-EGL   83 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S----TT-----TT--EE-------E--SS---S-C-HHH
T ss_pred             cccccccccccccccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCcc-Chhhhhhc-------ccCCCCCCccc-cch
Confidence            3356777777776654  34443345667777777642 321  11111 13334433       34444333321 123


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  175 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~  175 (252)
                      ...+|+|++|.+++|+|++-.-...+..||+|+.|++.+++-.....  ..+...+|+|+.|..
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            34578888888888876554333445578888888888766554333  455677888888764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=2.2e-09  Score=85.58  Aligned_cols=130  Identities=22%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      +-++++|++.+..- ..+..+...+.+|+.|+|++|.|+.  +..+ ..+++|+.|+++++ .|+.-+ ..+...+|+|+
T Consensus        18 ~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--
T ss_pred             cccccccccccccc-ccccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCC-CCCccc-cchHHhCCcCC
Confidence            45789999998621 1244555567899999999998876  2222 46899999999995 565421 23445688998


Q ss_pred             hhcccCeecccCCCCcCcH-HHHHHHhcCCCCcEEEecCcccCHH--HHHHHHhcCCCCCEEeccCC
Q 025444           90 VLCRNMHPLDTADKLSQDD-EANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~it~~--~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .|.++       +..+.+- .+..+ ..+|+|+.|+|.+|+++..  .-..++..+|+|+.||-...
T Consensus        92 ~L~L~-------~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   92 ELYLS-------NNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EEE-T-------TS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EEECc-------CCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            88544       3333321 12333 3799999999999997654  23456779999999987654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.55  E-value=1.3e-07  Score=94.38  Aligned_cols=158  Identities=17%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      ++++.|++++..-...+......+++|+.|+|++|.++...-..+...+++|++|++++|. ++...-   ...+++|+.
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccccC---ccccCCCCE
Confidence            3566666665411111222233566677777766655432222333455666666666542 221000   012333333


Q ss_pred             hcccC-----------------eecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444           91 LCRNM-----------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        91 L~~~l-----------------~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      |.+..                 +.++++++.+.......+. .+++|++|+|++|.++.. +...+.++++|+.|+|++|
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCC
Confidence            32211                 1223333332222222232 566666666666664432 1222345666677776665


Q ss_pred             CCccCChHHHHhcCCCCceecc
Q 025444          154 WDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       154 ~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .........+ ..+++|++|..
T Consensus       223 ~l~~~~p~~l-~~l~~L~~L~L  243 (968)
T PLN00113        223 NLSGEIPYEI-GGLTSLNHLDL  243 (968)
T ss_pred             ccCCcCChhH-hcCCCCCEEEC
Confidence            4321122222 34566666643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.51  E-value=1.3e-07  Score=94.15  Aligned_cols=60  Identities=20%  Similarity=0.122  Sum_probs=26.3

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      .++|++|+++++.-...+......+++|+.|+|++|.++...-.. +.++++|++|++++|
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n  198 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN  198 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC
Confidence            345666666654111111222234556666666655443211111 134555555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.47  E-value=3.3e-07  Score=87.62  Aligned_cols=138  Identities=25%  Similarity=0.268  Sum_probs=101.2

Q ss_pred             HHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 025444            5 LITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG   82 (252)
Q Consensus         5 ~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~   82 (252)
                      .+....|+|++|.+++.  ..+. +..+..++|||..|++++++|++-   .-.+++++|+.|.+.+-..-+...+..+.
T Consensus       142 kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  142 KIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            46677899999999995  3344 778888999999999999988872   22278899999999885544445555554


Q ss_pred             hhCchhhhhcccCeecccCCCCcCcHH--H---HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           83 KHCKLLVVLCRNMHPLDTADKLSQDDE--A---NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        83 ~~~~~L~~L~~~l~~l~l~~~~~~~~~--~---~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      . +++|+.|.++       .....+..  +   ......+|+||.|+.+++.++...+..++..-|+|+.+.+-+|.
T Consensus       218 ~-L~~L~vLDIS-------~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~  286 (699)
T KOG3665|consen  218 N-LKKLRVLDIS-------RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL  286 (699)
T ss_pred             c-ccCCCeeecc-------ccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence            3 6667666544       32222211  1   12234589999999999999999999999999999888766543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.35  E-value=3.9e-07  Score=83.45  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=98.4

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      ..-+.|++++. .++-.+..+ .+.|||++++|..|.++.  +..+.....+|+.|+|.++ .|+.-.-+.++ ..|.|+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f-~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~-~l~alr  152 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFF-YNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELS-ALPALR  152 (873)
T ss_pred             cceeeeeccccccccCcHHHH-hcCCcceeeeeccchhhh--cccccccccceeEEeeecc-ccccccHHHHH-hHhhhh
Confidence            34456777775 333223333 478899999998886653  4444455677888888874 44432222222 234467


Q ss_pred             hhcc-----------------cCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444           90 VLCR-----------------NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  152 (252)
Q Consensus        90 ~L~~-----------------~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~  152 (252)
                      +|.+                 ++..+++++..+++-+.-.++ ++.+|..|.|+.|+||.-- ..+.+++|+|++|+|..
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccC-HHHhhhcchhhhhhccc
Confidence            6643                 344556666666666655554 5668888888888877643 34456789999999987


Q ss_pred             CCCccCChHHHHhcCCCCceeccCc
Q 025444          153 CWDVKLDDKFMKGNFPNLKVLGPFV  177 (252)
Q Consensus       153 C~~i~~~~~~l~~~~~~L~~L~~~~  177 (252)
                      . .+....-.-++..++|+.|+...
T Consensus       231 N-~irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  231 N-RIRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             c-ceeeehhhhhcCchhhhhhhhhh
Confidence            3 55444333356677777776433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=6.7e-07  Score=71.79  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             ccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHH
Q 025444           62 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKIL  139 (252)
Q Consensus        62 L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~  139 (252)
                      ++.++-+++ .|...|+..+. .++.++.|       .+..|. +.|..+..|+.-.|+|+.|+|++|. ||+.++.-+.
T Consensus       103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l-------~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~  173 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSL-------SLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL  173 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHHh-ccchhhhh-------eeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence            445555552 35555555443 24444444       223333 2334444555556888999999999 9999887665


Q ss_pred             hcCCCCCEEeccCCCCccCCh---HHHHhcCCCCceecc
Q 025444          140 SSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKVLGP  175 (252)
Q Consensus       140 ~~~~~L~~LdL~~C~~i~~~~---~~l~~~~~~L~~L~~  175 (252)
                       .+++|+.|.|++-+.|...+   ..+....|++++...
T Consensus       174 -~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~  211 (221)
T KOG3864|consen  174 -KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP  211 (221)
T ss_pred             -HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence             68999999988877664333   456777888888765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.30  E-value=8e-08  Score=79.80  Aligned_cols=111  Identities=22%  Similarity=0.217  Sum_probs=74.1

Q ss_pred             HHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcccCHH
Q 025444           55 IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHVISTE  133 (252)
Q Consensus        55 l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~it~~  133 (252)
                      +...+..|+.|.+.++...|-..   +. .+|+|++|-+       +... ....++..++..+|+|++|++++|+|.+.
T Consensus        38 l~d~~~~le~ls~~n~gltt~~~---~P-~Lp~LkkL~l-------sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l  106 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTLTN---FP-KLPKLKKLEL-------SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL  106 (260)
T ss_pred             ccccccchhhhhhhccceeeccc---CC-Ccchhhhhcc-------cCCcccccccceehhhhCCceeEEeecCCccccc
Confidence            33445666666666654322111   11 2455666633       3321 23445556677889999999999998875


Q ss_pred             HHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceeccC
Q 025444          134 IVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGPF  176 (252)
Q Consensus       134 ~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~~  176 (252)
                      .-..-++.+++|.+|++.+|...+..+  +.++...|+|++|...
T Consensus       107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            555566788999999999998776565  5677888999998753

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.9e-06  Score=69.26  Aligned_cols=58  Identities=28%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             hCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444           33 NAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL   91 (252)
Q Consensus        33 ~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L   91 (252)
                      .++.|+.|.+.+| .+.|.++..+..-.++|+.|+|++|+.||+.++..+.+ +++|+.|
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L  181 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRL  181 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHH
Confidence            3555555666666 55556665555555666666666666666666555543 4555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.21  E-value=5.5e-07  Score=86.13  Aligned_cols=134  Identities=22%  Similarity=0.310  Sum_probs=86.7

Q ss_pred             ccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444           13 LRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL   91 (252)
Q Consensus        13 L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L   91 (252)
                      |+.|.+.+. .+|..+..+. .+++||.|+|+.|+++.---.. ..+++.|++|+||++ +++.-. ..+ ..|+.|++|
T Consensus       361 Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~-~~kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL  435 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASK-LRKLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTL  435 (1081)
T ss_pred             HHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHH-HhchHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHH
Confidence            444555443 4566555544 7889999999998555311111 256788999999994 454322 223 357788888


Q ss_pred             cccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHH
Q 025444           92 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF  162 (252)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~  162 (252)
                      ..+.+.+..         .-.++ .+|.|+.++|+.|.++...+...+. .|+|++|||+|......+-+.
T Consensus       436 ~ahsN~l~~---------fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~  495 (1081)
T KOG0618|consen  436 RAHSNQLLS---------FPELA-QLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKT  495 (1081)
T ss_pred             hhcCCceee---------chhhh-hcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhh
Confidence            665333210         11333 7899999999999999887776654 389999999998765333333

>PLN03210 Resistant to P

Probab=98.20  E-value=1.3e-06  Score=88.67  Aligned_cols=38  Identities=32%  Similarity=0.492  Sum_probs=18.1

Q ss_pred             cCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          116 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       116 ~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      ++++|++|+|++|. ++.  +...+ ++++|+.|+|++|..+
T Consensus       800 ~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        800 NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRL  838 (1153)
T ss_pred             CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcc
Confidence            45555555555554 331  11111 3455666666665444

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.19  E-value=9e-07  Score=81.14  Aligned_cols=63  Identities=24%  Similarity=0.278  Sum_probs=41.4

Q ss_pred             cHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCcee
Q 025444          107 DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL  173 (252)
Q Consensus       107 ~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L  173 (252)
                      .+++.++. ++|+|+.|.+.||+|....-.++ .+++.|+.|||.+....+.....+ +.. +||.|
T Consensus       382 EDaa~~f~-gl~~LrkL~l~gNqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAF-e~m-~Lk~L  444 (873)
T KOG4194|consen  382 EDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAF-EPM-ELKEL  444 (873)
T ss_pred             ecchhhhc-cchhhhheeecCceeeecchhhh-ccCcccceecCCCCcceeeccccc-ccc-hhhhh
Confidence            34444554 79999999999999665544444 489999999999865444343333 222 45555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=9.6e-06  Score=68.22  Aligned_cols=164  Identities=19%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             CCCccEEEecCCCC----HHH---HHH---HHHhCCCCcEEEccCCCCC---HHHHHHHHhcCCCccEEeccCCCCCCHH
Q 025444           10 SGSLRKLCVSGLHN----DMM---FSL---IAENAGSLQTLRLPRSEMS---DSIVAQIAGRLSAVTFLDLSYCSKIGAP   76 (252)
Q Consensus        10 ~~~L~~L~l~~~~~----d~~---l~~---i~~~~~~L~~L~L~~~~i~---~~~l~~l~~~~~~L~~L~Ls~c~~i~~~   76 (252)
                      -.+|+..+++...+    |..   +..   ....||+|+.++|+.|-+.   .+-+..++++...|++|.+++| .++..
T Consensus        57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~  135 (388)
T COG5238          57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPI  135 (388)
T ss_pred             hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCcc
Confidence            45677777776422    222   222   2236888888888887433   2456666677788888888876 35554


Q ss_pred             HHHHHHhhCch------------hhhhcc---------------------cCeecccCCCCcCcHHHHHHH----hcCCC
Q 025444           77 ALEAIGKHCKL------------LVVLCR---------------------NMHPLDTADKLSQDDEANAIA----STMPK  119 (252)
Q Consensus        77 ~l~~l~~~~~~------------L~~L~~---------------------~l~~l~l~~~~~~~~~~~~l~----~~~~~  119 (252)
                      +-..|++.+.+            |+....                     +++.+.+....+...++..++    ..+++
T Consensus       136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~  215 (388)
T COG5238         136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS  215 (388)
T ss_pred             chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence            44444433222            222211                     223333444455566554433    46899


Q ss_pred             CcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCCCccCChHHH-----HhcCCCCceec
Q 025444          120 LKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKFM-----KGNFPNLKVLG  174 (252)
Q Consensus       120 L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~~i~~~~~~l-----~~~~~~L~~L~  174 (252)
                      |+.|+|..|.+|..+-..++.   ..+.|+.|.+..|-..+...+.+     ....|+|..|+
T Consensus       216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~  278 (388)
T COG5238         216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP  278 (388)
T ss_pred             ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccc
Confidence            999999999988777555544   56788999999996554333433     24456777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=2.7e-05  Score=65.53  Aligned_cols=144  Identities=18%  Similarity=0.138  Sum_probs=87.0

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHh---CCCCcEEEccCC---CCCHHH------HHHHHhcCCCccEEeccCCCCCCHH
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAEN---AGSLQTLRLPRS---EMSDSI------VAQIAGRLSAVTFLDLSYCSKIGAP   76 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~---~~~L~~L~L~~~---~i~~~~------l~~l~~~~~~L~~L~Ls~c~~i~~~   76 (252)
                      ...++++++||. ++......++..   -++|+..+++..   +..++.      +.+..-+||+|+..+||.+ .++..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence            567899999996 555556665543   457777777765   333332      2233457999999999995 56554


Q ss_pred             HHH---HHHhhCchhhhhcccCeec------------------------------ccCCCCcCcHHH---HHHHhcCCCC
Q 025444           77 ALE---AIGKHCKLLVVLCRNMHPL------------------------------DTADKLSQDDEA---NAIASTMPKL  120 (252)
Q Consensus        77 ~l~---~l~~~~~~L~~L~~~l~~l------------------------------~l~~~~~~~~~~---~~l~~~~~~L  120 (252)
                      ...   -+..+-..|++|.++.+.+                              ..+....-....   .+..+.-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            433   3334556688886543322                              111111111111   1222223578


Q ss_pred             cEEEecCcccCHHHHHHHH----hcCCCCCEEeccCCC
Q 025444          121 KRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCW  154 (252)
Q Consensus       121 ~~L~L~~~~it~~~l~~i~----~~~~~L~~LdL~~C~  154 (252)
                      +++.+.+|.|..+++..++    ..|++|+.|||....
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            8888888888888765543    378899999998753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.1e-05  Score=68.75  Aligned_cols=169  Identities=18%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             HHHHHcCCCccEEEecCC-CC-HHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 025444            4 MLITRSSGSLRKLCVSGL-HN-DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI   81 (252)
Q Consensus         4 ~~i~~~~~~L~~L~l~~~-~~-d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l   81 (252)
                      +.++.+|..++++++.+. ++ -+-+..|.++.|.|+.|+|+.|.++.. +..+.....+|+.|-|.+ +.+.+..+..+
T Consensus        64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~  141 (418)
T KOG2982|consen   64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSS  141 (418)
T ss_pred             HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-CCCChhhhhhh
Confidence            344555666666666553 22 233555556666666666665544431 111111234566666655 55666666666


Q ss_pred             HhhCchhhhhcccCe---ecccC-----------------CCCcC-cHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHh
Q 025444           82 GKHCKLLVVLCRNMH---PLDTA-----------------DKLSQ-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILS  140 (252)
Q Consensus        82 ~~~~~~L~~L~~~l~---~l~l~-----------------~~~~~-~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~  140 (252)
                      ....|.++.|.++.+   .+++.                 +|... ......+.+.+|++..+-+..|++.+..-..-..
T Consensus       142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se  221 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE  221 (418)
T ss_pred             hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence            666776666644333   12211                 11110 1112233344566666666666555544444444


Q ss_pred             cCCCCCEEeccCCCCcc-CChHHHHhcCCCCceecc
Q 025444          141 SCALLEFLDLRGCWDVK-LDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       141 ~~~~L~~LdL~~C~~i~-~~~~~l~~~~~~L~~L~~  175 (252)
                      .+|.+-.|+|+.. ++. ...-.-...+|+|..||.
T Consensus       222 ~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv  256 (418)
T KOG2982|consen  222 PFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRV  256 (418)
T ss_pred             CCCcchhhhhccc-ccccHHHHHHHcCCchhheeec
Confidence            4455555555442 221 111111345666666653

>PLN03210 Resistant to P

Probab=97.97  E-value=4.7e-06  Score=84.67  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             hcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCcc
Q 025444          115 STMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVK  157 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~  157 (252)
                      ..+++|+.|+|++|+ ++.  +......+++|+.|++++|..++
T Consensus       866 ~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        866 EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence            368889999998877 664  33334567888888888887664

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.77  E-value=8.1e-06  Score=75.74  Aligned_cols=119  Identities=20%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcH----
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD----  108 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~----  108 (252)
                      ..++|+.|+|++|.|+.  +..-.....+|++|++|.+ .++  .+....-.+++|++|-.+.+.+++.|....-.    
T Consensus       243 ~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrN-QLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRN-QLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             hhhhhheeccCcCceee--eeccHHHHhhhhhhccccc-hhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            34566666666665554  1111233566667777663 232  12221223566888877777777766542211    


Q ss_pred             -HHHHHH-----------hcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCC
Q 025444          109 -EANAIA-----------STMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLD  159 (252)
Q Consensus       109 -~~~~l~-----------~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~  159 (252)
                       .+...+           .+|++|+.|.|+.|+ ||--   .-+.-++.|+.|||+..+++-+.
T Consensus       318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP---eaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP---EAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             hHHHHhhccccccCchhhhhhHHHHHhcccccceeech---hhhhhcCCcceeeccCCcCccCC
Confidence             111111           358999999999999 7733   33345689999999988877543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=5.3e-06  Score=70.57  Aligned_cols=107  Identities=25%  Similarity=0.298  Sum_probs=68.5

Q ss_pred             ccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           13 LRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        13 L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      +.-|.+.++  .+...+..++..+..++.|+|.+|.|++ ..+.++.+++|.|+.|+|+.+. ++. .+..+.....+|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceE
Confidence            334555555  3444567788889999999999999988 6788888999999999998753 321 2222222334555


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCc
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH  128 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  128 (252)
                      .|-+|       |....-.........+|+++.|+++.|
T Consensus       125 ~lVLN-------gT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  125 VLVLN-------GTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEEc-------CCCCChhhhhhhhhcchhhhhhhhccc
Confidence            55444       333333334444456666677666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=4.4e-05  Score=64.53  Aligned_cols=101  Identities=20%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      .+.++|+..||.++|-   .+..++|.|+.|.||-+ +|+  .+..+ ..|++|+.|-       +..+.+.+-.-.+..
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvN-kIs--sL~pl-~rCtrLkElY-------LRkN~I~sldEL~YL   84 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVN-KIS--SLAPL-QRCTRLKELY-------LRKNCIESLDELEYL   84 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHhcccceeEEeecc-ccc--cchhH-HHHHHHHHHH-------HHhcccccHHHHHHH
Confidence            3566677777777662   23356677777777663 343  23333 2466666652       222223333333333


Q ss_pred             hcCCCCcEEEecCcc-cCHH---HHHHHHhcCCCCCEEe
Q 025444          115 STMPKLKRLEMAYHV-ISTE---IVLKILSSCALLEFLD  149 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~-it~~---~l~~i~~~~~~L~~Ld  149 (252)
                      +++|+|+.|-|..|. ....   --..+++.+|+|++||
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            466666666666655 2111   1234455566666664

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.53  E-value=0.00011  Score=39.30  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             CCCccEEeccCCCCCCHHHHHHHHh
Q 025444           59 LSAVTFLDLSYCSKIGAPALEAIGK   83 (252)
Q Consensus        59 ~~~L~~L~Ls~c~~i~~~~l~~l~~   83 (252)
                      ||+|++|+|++|..||+.++.+|++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5778888888888888888877764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.25  E-value=0.00016  Score=61.89  Aligned_cols=55  Identities=25%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             CccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           12 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        12 ~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      .|++|++|+..- ..+..-.+-.|.++.|+++.|+|+.  +..+ +.+++|+.|+||++
T Consensus       285 ~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~--v~nL-a~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  285 ELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT--VQNL-AELPQLQLLDLSGN  339 (490)
T ss_pred             hhhhccccccch-hhhhhhhhhccceeEEeccccceee--ehhh-hhcccceEeecccc
Confidence            466666666411 1122222345677777777776654  2222 45677777777774

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.18  E-value=0.00039  Score=37.15  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=18.1

Q ss_pred             CCCCcEEEecCcc-cCHHHHHHHHh
Q 025444          117 MPKLKRLEMAYHV-ISTEIVLKILS  140 (252)
Q Consensus       117 ~~~L~~L~L~~~~-it~~~l~~i~~  140 (252)
                      ||+|++|+|++|. ||+.++..+.+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5778888888887 88888777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=2.8e-05  Score=64.81  Aligned_cols=135  Identities=15%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             CccEEEecCCCC-HHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           12 SLRKLCVSGLHN-DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        12 ~L~~L~l~~~~~-d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      ..+.+.+..|.+ ...+..+...+.+|+.|++.++.++.  +..+ ..+|+|+.|.+|.++.-...++..++..||+|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~   95 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV   95 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccC-CCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence            344455554422 22244445556677777777775443  2222 4578999999998644445677888888899988


Q ss_pred             hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHH--HHHHHHhcCCCCCEEeccCCCCc
Q 025444           91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~--~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      |.++       +..+.+-.-..=.+.+++|..|++..|..+..  -=..+..-.|+|++||-..+...
T Consensus        96 l~ls-------~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen   96 LNLS-------GNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             Eeec-------CCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            8444       43333311111124678899999999985431  22355667899999987665443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.12  E-value=0.00016  Score=69.75  Aligned_cols=124  Identities=19%  Similarity=0.225  Sum_probs=78.7

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      +.|+.|.+.+|.+++..+..+ ..+++|+.|+|+++ .++...-..+ ++++.|+.|       +++|...+.- ...++
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL-------~LSGNkL~~L-p~tva  427 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEEL-------NLSGNKLTTL-PDTVA  427 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhh-ccccceeeeeeccc-ccccCCHHHH-hchHHhHHH-------hcccchhhhh-hHHHH
Confidence            457778888899999888777 47899999999996 3332222222 234556666       5555443322 23444


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                       .|+.|++|...+|.|..  +..++ .+++|+.+||+. .+++...-....-.|+||+|.
T Consensus       428 -~~~~L~tL~ahsN~l~~--fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  428 -NLGRLHTLRAHSNQLLS--FPELA-QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             -hhhhhHHHhhcCCceee--chhhh-hcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence             78999999998888542  23444 689999999984 566322211111126888874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.06  E-value=0.00012  Score=68.26  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=27.6

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      ++++|+.|+|++|.||.-.+.  .....+|+.|++|...
T Consensus       243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccch
Confidence            568899999999998864332  2356788999998854

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.02  E-value=0.00067  Score=41.23  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=27.4

Q ss_pred             CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      ++|++|++++|.|++  +...+.+|++|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            579999999999885  44446799999999999984

...

>PLN03150 hypothetical protein; Provisional

Probab=96.89  E-value=0.0012  Score=63.14  Aligned_cols=106  Identities=13%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             CcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhc
Q 025444           37 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  116 (252)
Q Consensus        37 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~  116 (252)
                      ++.|+|+++.++...-. -+..+++|+.|+|++| .++...-..+ ..+++|+.|       +++++.+.......+. .
T Consensus       420 v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~L-------dLs~N~lsg~iP~~l~-~  488 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVL-------DLSYNSFNGSIPESLG-Q  488 (623)
T ss_pred             EEEEECCCCCccccCCH-HHhCCCCCCEEECCCC-cccCcCChHH-hCCCCCCEE-------ECCCCCCCCCCchHHh-c
Confidence            55666666654432111 2245666777777664 2332111112 234445444       3333333222222232 5


Q ss_pred             CCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          117 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       117 ~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      +++|++|+|++|.++...-..+.....++..+++.++
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            6667777777666553322222222334555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.00025  Score=60.02  Aligned_cols=103  Identities=23%  Similarity=0.178  Sum_probs=74.4

Q ss_pred             CCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH
Q 025444           59 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI  138 (252)
Q Consensus        59 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i  138 (252)
                      +.+.+.|+.-+|. +++   ..|.+..|.|+.|.++.+.+.          -.+-...|.+|++|.|+.|.|.+-.-..-
T Consensus        18 l~~vkKLNcwg~~-L~D---Isic~kMp~lEVLsLSvNkIs----------sL~pl~rCtrLkElYLRkN~I~sldEL~Y   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDD---ISICEKMPLLEVLSLSVNKIS----------SLAPLQRCTRLKELYLRKNCIESLDELEY   83 (388)
T ss_pred             HHHhhhhcccCCC-ccH---HHHHHhcccceeEEeeccccc----------cchhHHHHHHHHHHHHHhcccccHHHHHH
Confidence            4678899999974 665   456677888888866544321          11222589999999999999888776777


Q ss_pred             HhcCCCCCEEeccCCCCccCCh----HHHHhcCCCCceecc
Q 025444          139 LSSCALLEFLDLRGCWDVKLDD----KFMKGNFPNLKVLGP  175 (252)
Q Consensus       139 ~~~~~~L~~LdL~~C~~i~~~~----~~l~~~~~~L~~L~~  175 (252)
                      ++++|+|+.|-|...+-....+    ..+.+..|+||.|..
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            8899999999987644333233    355678999999963

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.72  E-value=0.0018  Score=39.30  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCC
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG   74 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~   74 (252)
                      ++|++|+|++|+|++  +...+.++++|+.|++++| .|+
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence            578999999998886  4444578899999999986 454

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.71  E-value=7.8e-05  Score=48.59  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=24.6

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      .+++|++|+|++|.|+... ...+.++++|++|++++|.
T Consensus        23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            5677777777777765321 2234577777777777763

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.70  E-value=0.00013  Score=68.91  Aligned_cols=106  Identities=25%  Similarity=0.307  Sum_probs=66.5

Q ss_pred             HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh-hCchhhhhcccCeecccCCCCcCcHHH
Q 025444           32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~-~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      .-.+.|+.|+|+.|++++..   .+..|++|++|+|+++ .++  .+..++. .|+ |..|.       ++++.++  .+
T Consensus       184 qll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN-~L~--~vp~l~~~gc~-L~~L~-------lrnN~l~--tL  247 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN-CLR--HVPQLSMVGCK-LQLLN-------LRNNALT--TL  247 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH---HHHhcccccccccccc-hhc--cccccchhhhh-heeee-------ecccHHH--hh
Confidence            34567899999998887633   3367899999999885 221  1112221 232 44442       2222211  12


Q ss_pred             HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      ..| .++++|+.|++++|-|.+..-...+..+..|+.|.|.|.+
T Consensus       248 ~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  248 RGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            223 3788999999999987776666666677788888888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.65  E-value=0.0015  Score=58.10  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             HHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           31 AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        31 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      ...+++|.-|+|++|.+.+--..  ...+..|+.|+|+.+. +     ..+.+.|-.++.+    +.+-.+...+..-..
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~e--~~~lv~Lq~LnlS~Nr-F-----r~lP~~~y~lq~l----Etllas~nqi~~vd~  498 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPEE--MGSLVRLQTLNLSFNR-F-----RMLPECLYELQTL----ETLLASNNQIGSVDP  498 (565)
T ss_pred             HHhhhcceeeecccchhhhcchh--hhhhhhhheecccccc-c-----ccchHHHhhHHHH----HHHHhccccccccCh
Confidence            34567777888877754441111  1223448888887752 2     3344444334433    111122222222112


Q ss_pred             HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      ..+ .+|.+|..|+|..|.+.  .+..++.+|.+|++|++.|.+.-
T Consensus       499 ~~l-~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGL-KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHh-hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence            223 37899999999998865  46778889999999999997544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.61  E-value=0.002  Score=33.58  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=17.7

Q ss_pred             CCCCcEEEecCcccCHHHHHHHH
Q 025444          117 MPKLKRLEMAYHVISTEIVLKIL  139 (252)
Q Consensus       117 ~~~L~~L~L~~~~it~~~l~~i~  139 (252)
                      +++|++|+|++|.|+++++..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            57899999999999999988875

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.61  E-value=0.00011  Score=47.79  Aligned_cols=59  Identities=22%  Similarity=0.187  Sum_probs=35.6

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|+.|+++++.-...-......+++|++|+|++|.++.-.- .....+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence            467888888761111111233467788888888876653111 12356788888888875

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.39  E-value=0.002  Score=62.71  Aligned_cols=13  Identities=15%  Similarity=0.322  Sum_probs=6.9

Q ss_pred             CCcEEEecCcccC
Q 025444          119 KLKRLEMAYHVIS  131 (252)
Q Consensus       119 ~L~~L~L~~~~it  131 (252)
                      +|++|+|++|+|+
T Consensus       343 ~Lq~LdLS~N~Ls  355 (788)
T PRK15387        343 GLQELSVSDNQLA  355 (788)
T ss_pred             ccceEecCCCccC
Confidence            4555555555555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.27  E-value=0.0019  Score=59.55  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=31.9

Q ss_pred             cccCCCCcCcHHHHHHHhc---CCC-CcEEEecCcccCHHHHHHHHhcC----CCCCEEeccCCCCcc
Q 025444           98 LDTADKLSQDDEANAIAST---MPK-LKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRGCWDVK  157 (252)
Q Consensus        98 l~l~~~~~~~~~~~~l~~~---~~~-L~~L~L~~~~it~~~l~~i~~~~----~~L~~LdL~~C~~i~  157 (252)
                      +.+..|.++......++..   .++ ++.|++..|.+.+.++..+...+    +.++.++++.|....
T Consensus       209 L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  209 LKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            3444555554444433322   233 55566666666666666555533    344677777765443

>PLN03150 hypothetical protein; Provisional

Probab=96.27  E-value=0.0053  Score=58.74  Aligned_cols=107  Identities=14%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             ccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhc
Q 025444           13 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC   92 (252)
Q Consensus        13 L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~   92 (252)
                      ++.|+|+++.-...+..-...+++|+.|+|++|.++.. +......+++|+.|+|++| .++...-..++ .+++|+.|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEE
Confidence            67788877521112222334789999999999977642 2333467899999999996 45543333343 467777774


Q ss_pred             ccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc
Q 025444           93 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV  129 (252)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  129 (252)
                      +       +++.........+.....++..+++.+|.
T Consensus       497 L-------s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        497 L-------NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             C-------cCCcccccCChHHhhccccCceEEecCCc
Confidence            4       44433322223333334567788888876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.25  E-value=0.0053  Score=60.78  Aligned_cols=108  Identities=21%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             HhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           32 ENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        32 ~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      .+.|.|+.|+|++| .++  .+...+..+-+|+.|++++ +.|+     .+..++.+|+.|    ..+++..+.... ..
T Consensus       568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~-t~I~-----~LP~~l~~Lk~L----~~Lnl~~~~~l~-~~  634 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSD-TGIS-----HLPSGLGNLKKL----IYLNLEVTGRLE-SI  634 (889)
T ss_pred             hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccC-CCcc-----ccchHHHHHHhh----heeccccccccc-cc
Confidence            45666666666665 322  1333334555666666666 3333     333333333333    222222211100 01


Q ss_pred             HHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccC
Q 025444          111 NAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRG  152 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~  152 (252)
                      ..+...+++||+|.+.+.. -.+.....-+.++.+|+.+.+..
T Consensus       635 ~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  635 PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            2233457777777777654 22222233334555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.24  E-value=0.00027  Score=55.92  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccC
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY   69 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~   69 (252)
                      ...+|+.|++.+++|+.  +..-++++|+|+.|+++-
T Consensus        54 ~l~nlevln~~nnqie~--lp~~issl~klr~lnvgm   88 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGM   88 (264)
T ss_pred             Hhhhhhhhhcccchhhh--cChhhhhchhhhheecch
Confidence            45677777777776654  333335667777777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.06  E-value=0.004  Score=50.49  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=56.5

Q ss_pred             CCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcH-HHHHHH
Q 025444           36 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-EANAIA  114 (252)
Q Consensus        36 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~-~~~~l~  114 (252)
                      +...++|.++.+..   .....+++.|..|.++++ .|+.-. ..+....|+|+.|.       +.+..+..- .+.-++
T Consensus        43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~-------LtnNsi~~l~dl~pLa  110 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLI-------LTNNSIQELGDLDPLA  110 (233)
T ss_pred             ccceecccccchhh---cccCCCccccceEEecCC-cceeec-cchhhhccccceEE-------ecCcchhhhhhcchhc
Confidence            45555555553322   111245566666666663 343211 12333344444442       222222211 122333


Q ss_pred             hcCCCCcEEEecCcccCHHH--HHHHHhcCCCCCEEeccC
Q 025444          115 STMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRG  152 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~--l~~i~~~~~~L~~LdL~~  152 (252)
                       .||+|+.|.+-+|.++...  =..++...|+|+.||..+
T Consensus       111 -~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  111 -SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             -cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence             7999999999999987653  234566889999999876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.05  E-value=0.0052  Score=54.54  Aligned_cols=62  Identities=15%  Similarity=0.155  Sum_probs=37.1

Q ss_pred             hcCCCCcEEEecCcccCHHH---H--------------------HHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCc
Q 025444          115 STMPKLKRLEMAYHVISTEI---V--------------------LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  171 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~---l--------------------~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~  171 (252)
                      +.+|+|++|+|++|+|+...   +                    ..+++++..|+.|+|.+. +||......++....|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceee
Confidence            56899999999999876531   1                    122346778888888885 44322222224444555


Q ss_pred             eeccCc
Q 025444          172 VLGPFV  177 (252)
Q Consensus       172 ~L~~~~  177 (252)
                      .|..+.
T Consensus       350 ~l~l~~  355 (498)
T KOG4237|consen  350 TLNLLS  355 (498)
T ss_pred             eeehcc
Confidence            555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.03  E-value=0.0055  Score=59.68  Aligned_cols=103  Identities=13%  Similarity=0.110  Sum_probs=49.5

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      .+-..|+++...-...-..+   .++|+.|.+.+|+++.  +.   ...++|++|+|++| .++.     +....++|+.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l---~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N-~Lts-----LP~lp~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGN-QLTS-----LPVLPPGLLE  266 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch---hcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCC-ccCc-----ccCcccccce
Confidence            45566777765111111111   1367777777765553  11   12466777777664 3331     1111223333


Q ss_pred             hccc-------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH
Q 025444           91 LCRN-------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  132 (252)
Q Consensus        91 L~~~-------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~  132 (252)
                      |.+.             +..+.+.++.+.     .+....++|+.|+|++|.++.
T Consensus       267 L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-----~LP~~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        267 LSIFSNPLTHLPALPSGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLAS  316 (788)
T ss_pred             eeccCCchhhhhhchhhcCEEECcCCccc-----cccccccccceeECCCCcccc
Confidence            3221             122233343332     122235789999999988664

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.03  E-value=0.0055  Score=31.87  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=9.2

Q ss_pred             CCccEEeccCCCCCCHHHHHHHH
Q 025444           60 SAVTFLDLSYCSKIGAPALEAIG   82 (252)
Q Consensus        60 ~~L~~L~Ls~c~~i~~~~l~~l~   82 (252)
                      ++|++|+|++|. |++.++.+|+
T Consensus         2 ~~L~~L~l~~n~-i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQ-ITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred             CCCCEEEccCCc-CCHHHHHHhC
Confidence            444555554432 4444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.00  E-value=0.0017  Score=59.95  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             CcEEEccCCCCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhhCchh-hhhcccCeecccCCCCcCcHHHHH
Q 025444           37 LQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHCKLL-VVLCRNMHPLDTADKLSQDDEANA  112 (252)
Q Consensus        37 L~~L~L~~~~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L-~~L~~~l~~l~l~~~~~~~~~~~~  112 (252)
                      +..|.|.+|.+.+.++..+++.   ++.|+.|+++++ .+++.++..+....+.. ..|    +.+.+..|.++..+...
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l----~~L~l~~c~l~~~g~~~  163 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLL----QTLELVSCSLTSEGAAP  163 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHH----HHHHhhcccccccchHH
Confidence            5556666665555554444433   455666666663 45566666555544443 222    22233344444444433


Q ss_pred             HHhc---CCCCcEEEecCcccCHHHHH
Q 025444          113 IAST---MPKLKRLEMAYHVISTEIVL  136 (252)
Q Consensus       113 l~~~---~~~L~~L~L~~~~it~~~l~  136 (252)
                      ++..   .+.|+.++++.|.+...+..
T Consensus       164 l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  164 LAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             HHHHHhcccchhHHHHHhcccchhhhH
Confidence            3322   34455555555554344333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.91  E-value=0.0033  Score=53.99  Aligned_cols=105  Identities=21%  Similarity=0.225  Sum_probs=66.4

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .|.++.|++|+..- ..+..+ ...++|+.|+|++|.++. .|+   -.++-|++.|.|+.+ .|     +.++    .|
T Consensus       306 ~Pkir~L~lS~N~i-~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL~La~N-~i-----E~LS----GL  370 (490)
T KOG1259|consen  306 APKLRRLILSQNRI-RTVQNL-AELPQLQLLDLSGNLLAECVGW---HLKLGNIKTLKLAQN-KI-----ETLS----GL  370 (490)
T ss_pred             ccceeEEeccccce-eeehhh-hhcccceEeecccchhHhhhhh---HhhhcCEeeeehhhh-hH-----hhhh----hh
Confidence            58899999998511 112222 368899999999997765 344   356899999999984 22     2222    23


Q ss_pred             hhhcccCeecccCCCCcCcHHHH-HHHhcCCCCcEEEecCcccC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEAN-AIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~it  131 (252)
                      .+| -++..+++.+..+..-... .|. ++|.|++|.|.+|++.
T Consensus       371 ~KL-YSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  371 RKL-YSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLA  412 (490)
T ss_pred             Hhh-hhheeccccccchhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence            222 1114446666665544333 443 7888888888888843

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=95.86  E-value=0.012  Score=54.11  Aligned_cols=33  Identities=27%  Similarity=0.130  Sum_probs=17.6

Q ss_pred             CCCCcEEEecCcccCH------HHHHHHHhcCCCCCEEe
Q 025444          117 MPKLKRLEMAYHVIST------EIVLKILSSCALLEFLD  149 (252)
Q Consensus       117 ~~~L~~L~L~~~~it~------~~l~~i~~~~~~L~~Ld  149 (252)
                      ...|++|-+.||+|..      +-+.+|-+.+|+|..||
T Consensus       269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence            3456666666666332      12344555666665554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.78  E-value=0.0085  Score=48.62  Aligned_cols=104  Identities=23%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             CCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH
Q 025444           59 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI  138 (252)
Q Consensus        59 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i  138 (252)
                      ..+...++|+++. +     ..+ ..+|++..|    +.+.+....++.-. -.+...+|+|..|.|.+|.|..-+=..-
T Consensus        41 ~d~~d~iDLtdNd-l-----~~l-~~lp~l~rL----~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~p  108 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-L-----RKL-DNLPHLPRL----HTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDP  108 (233)
T ss_pred             ccccceecccccc-h-----hhc-ccCCCcccc----ceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcch
Confidence            5677888888853 2     122 345555555    44444444443211 1233457999999999999766554555


Q ss_pred             HhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceec
Q 025444          139 LSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  174 (252)
Q Consensus       139 ~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~  174 (252)
                      +..||+|++|.+-+.+.-....  ..+.-..|+|++|.
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LD  146 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLD  146 (233)
T ss_pred             hccCCccceeeecCCchhcccCceeEEEEecCcceEee
Confidence            5689999999998865443333  23456778888884

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.40  E-value=0.021  Score=30.98  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCCcEEEecCcccCHHHHHHHHhcC
Q 025444          118 PKLKRLEMAYHVISTEIVLKILSSC  142 (252)
Q Consensus       118 ~~L~~L~L~~~~it~~~l~~i~~~~  142 (252)
                      ++|++|+|++|.|+++++..+++.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            6799999999999999998887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.39  E-value=0.043  Score=53.54  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      ++|+.|+|++|.++.  +..-+  .++|+.|+|++|.
T Consensus       346 ~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        346 PELQVLDVSKNQITV--LPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             CcccEEECCCCCCCc--CChhh--cCCcCEEECCCCc
Confidence            577888888777652  11111  2577777777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.37  E-value=0.019  Score=56.97  Aligned_cols=131  Identities=23%  Similarity=0.208  Sum_probs=76.4

Q ss_pred             HhCCCCcEEEccCCCC-CHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           32 ENAGSLQTLRLPRSEM-SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        32 ~~~~~L~~L~L~~~~i-~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      ..+++|++|-+.++.- -..+-..+..++|.|+.|+|++|..++. --..|+ .+-+|+.|       ++.++.+. .-.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~-~Li~LryL-------~L~~t~I~-~LP  611 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIG-ELVHLRYL-------DLSDTGIS-HLP  611 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHh-hhhhhhcc-------cccCCCcc-ccc
Confidence            4578899999988742 1223334456799999999999765542 112222 34456666       44444332 111


Q ss_pred             HHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceeccCc
Q 025444          111 NAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  177 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~~~  177 (252)
                      ..+ ..+++|.+|++..+. +...  ..+...+++|++|.+.+-. ...+...+ ....+|+.|+.++
T Consensus       612 ~~l-~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~-~~~~~~~l-~el~~Le~L~~ls  674 (889)
T KOG4658|consen  612 SGL-GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA-LSNDKLLL-KELENLEHLENLS  674 (889)
T ss_pred             hHH-HHHHhhheeccccccccccc--cchhhhcccccEEEeeccc-cccchhhH-Hhhhcccchhhhe
Confidence            222 367789999998876 3221  4455568999999998743 32232222 3335555555433

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.05  E-value=0.014  Score=52.59  Aligned_cols=56  Identities=9%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCC
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKI   73 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i   73 (252)
                      |+++++|++++|.    +..+...-++|++|.+.+| .++.  +....  .++|+.|.|++|..+
T Consensus        51 ~~~l~~L~Is~c~----L~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         51 ARASGRLYIKDCD----IESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEI  107 (426)
T ss_pred             hcCCCEEEeCCCC----CcccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccc
Confidence            5777777777761    2222222235777777776 3321  11111  246777777776544

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=94.89  E-value=0.072  Score=46.30  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEec
Q 025444           50 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMA  126 (252)
Q Consensus        50 ~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~  126 (252)
                      ..+..+-..=|.|+..+|++...|+...+..++..+.+=++.    ..+.+.+....+..+.+++   +.++.|++|++.
T Consensus       188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~v----k~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnve  263 (353)
T KOG3735|consen  188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHV----KKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVE  263 (353)
T ss_pred             HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchh----hhhhhhcccCCchhHHHHHHHHhhcchhhheecc
Confidence            445555555689999999998888888888877765443333    2234555566666666665   457999999999


Q ss_pred             CcccCHHHHHHHHhcCCCCC
Q 025444          127 YHVISTEIVLKILSSCALLE  146 (252)
Q Consensus       127 ~~~it~~~l~~i~~~~~~L~  146 (252)
                      +|.||..++.+++..++.=+
T Consensus       264 snFItg~gi~a~~~al~~n~  283 (353)
T KOG3735|consen  264 SNFITGLGIMALLRALQSNK  283 (353)
T ss_pred             ccccccHHHHHHHHHHhccc
Confidence            99999999998887554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.84  E-value=0.015  Score=52.20  Aligned_cols=133  Identities=25%  Similarity=0.220  Sum_probs=72.9

Q ss_pred             CccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444           12 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL   91 (252)
Q Consensus        12 ~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L   91 (252)
                      +|+.|++++..- ..+..-...+++|+.|.++.|.+++  +.......++|+.|+++++ .++.  +........+|+.|
T Consensus       141 nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSALEEL  214 (394)
T ss_pred             hcccccccccch-hhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCC-cccc--Cchhhhhhhhhhhh
Confidence            677787776421 1121223578899999999887776  2233225788888888885 3432  11111122224444


Q ss_pred             cccCe----------------ecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444           92 CRNMH----------------PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus        92 ~~~l~----------------~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      .++..                .+.+.+....+  .......+++|+.|++++|.++....   +....+|+.|++++-..
T Consensus       215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccccccccc---ccccCccCEEeccCccc
Confidence            33222                01111111111  01233467778888888888776443   45678888888887433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.65  E-value=0.055  Score=29.26  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=11.5

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHh
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAG   57 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~   57 (252)
                      ++|++|+|++|.|+++|...+++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            34555555555555555544443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.11  E-value=0.018  Score=55.02  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=14.5

Q ss_pred             hCCCCcEEEccCCCCCH-HHHHHH
Q 025444           33 NAGSLQTLRLPRSEMSD-SIVAQI   55 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~-~~l~~l   55 (252)
                      .++.|+.|.|.+|.+.- .|+..+
T Consensus       107 pF~sLr~LElrg~~L~~~~GL~~l  130 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTAKGLQEL  130 (1096)
T ss_pred             cccceeeEEecCcchhhhhhhHHH
Confidence            46678888888775543 455444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.08  E-value=0.046  Score=48.99  Aligned_cols=136  Identities=18%  Similarity=0.131  Sum_probs=73.1

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhC-CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENA-GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~-~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      ..++.|.+.+....+ +....... ++|+.|+++++.+..  +..-...+++|+.|++++|. +++-  .......++|+
T Consensus       116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~-l~~l--~~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFND-LSDL--PKLLSNLSNLN  189 (394)
T ss_pred             cceeEEecCCccccc-Cccccccchhhcccccccccchhh--hhhhhhccccccccccCCch-hhhh--hhhhhhhhhhh
Confidence            457788777742212 22333344 489999999997765  21233679999999999963 4321  11111455666


Q ss_pred             hhcccCee----------------cccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444           90 VLCRNMHP----------------LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        90 ~L~~~l~~----------------l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .|.++...                +.+++...  .........++++..|.+..+++...  ...+..++.|+.|+++++
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN  265 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeec--cchhccccccceeccccc
Confidence            66433221                11111100  00001112345556666666654431  233456777888888886


Q ss_pred             CCc
Q 025444          154 WDV  156 (252)
Q Consensus       154 ~~i  156 (252)
                      ...
T Consensus       266 ~i~  268 (394)
T COG4886         266 QIS  268 (394)
T ss_pred             ccc
Confidence            433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.75  E-value=0.005  Score=48.89  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             CCCCcEEEccCCCCCH--HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444           34 AGSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  111 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~  111 (252)
                      ..+++.|.|+.++++.  .++    ..+.+|+.|+++++ .|..  +..-..++|+|+.|++.+..+++.--..      
T Consensus        32 ~s~ITrLtLSHNKl~~vppni----a~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~lprgf------   98 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNI----AELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNILPRGF------   98 (264)
T ss_pred             hhhhhhhhcccCceeecCCcH----HHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcCcccc------
Confidence            4567888899886653  233    45688999999984 3432  2222235777888877666553322111      


Q ss_pred             HHHhcCCCCcEEEecCcccCHHH----------HHHH-------------HhcCCCCCEEeccCCCCcc
Q 025444          112 AIASTMPKLKRLEMAYHVISTEI----------VLKI-------------LSSCALLEFLDLRGCWDVK  157 (252)
Q Consensus       112 ~l~~~~~~L~~L~L~~~~it~~~----------l~~i-------------~~~~~~L~~LdL~~C~~i~  157 (252)
                         ..+|.|+.|+|.+|+++...          +.++             +.++.+|+.|.++...-++
T Consensus        99 ---gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen   99 ---GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             ---CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh
Confidence               35788899998888765542          2221             2256778888887765553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.65  E-value=0.017  Score=52.42  Aligned_cols=106  Identities=28%  Similarity=0.296  Sum_probs=60.4

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  111 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~  111 (252)
                      .+++|+.|++.++.|..  +..+...+++|++|+|+++ .|+. .++..    ++.|+.|.+       .++.+.+-.-.
T Consensus        93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~----l~~L~~L~l-------~~N~i~~~~~~  158 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLST----LTLLKELNL-------SGNLISDISGL  158 (414)
T ss_pred             cccceeeeeccccchhh--cccchhhhhcchheecccc-ccccccchhh----ccchhhhee-------ccCcchhccCC
Confidence            46778888888876653  3332356788888888884 4542 22322    233655533       33322211110


Q ss_pred             HHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          112 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       112 ~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                         ..+++|+.+++++|.++...-.. +..++.|+.+.+.+....
T Consensus       159 ---~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  159 ---ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ---ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence               12677788888888766543311 456777777777765444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.04  E-value=0.31  Score=47.68  Aligned_cols=19  Identities=21%  Similarity=0.349  Sum_probs=10.1

Q ss_pred             cCCCCcEEEecCcccCHHH
Q 025444          116 TMPKLKRLEMAYHVISTEI  134 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~  134 (252)
                      .+|++..|+|.+|+++...
T Consensus       413 ~~~~l~~L~L~~Npls~~t  431 (754)
T PRK15370        413 EGPQPTRIIVEYNPFSERT  431 (754)
T ss_pred             cCCCccEEEeeCCCccHHH
Confidence            3455555555555555433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.96  E-value=0.035  Score=42.55  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             CCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           36 SLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        36 ~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      .+..+.|++|.+-. ......+.+...|+..+|+++. +.. .-+.+....|.++.|++       ....+.+- ...+|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl-------~~neisdv-PeE~A   97 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNL-------ANNEISDV-PEELA   97 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhh-CCHHHhhccchhhhhhc-------chhhhhhc-hHHHh
Confidence            45556666664331 1122222344556666666631 111 11233333444444432       22222221 12244


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                       .+|.||.|++++|.+... .+.++. +.+|-+|+..+....
T Consensus        98 -am~aLr~lNl~~N~l~~~-p~vi~~-L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   98 -AMPALRSLNLRFNPLNAE-PRVIAP-LIKLDMLDSPENARA  136 (177)
T ss_pred             -hhHHhhhcccccCccccc-hHHHHH-HHhHHHhcCCCCccc
Confidence             678888888888886532 233443 666777776664443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.14  E-value=0.034  Score=50.49  Aligned_cols=105  Identities=23%  Similarity=0.193  Sum_probs=62.1

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCch
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKL   87 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~   87 (252)
                      ..+|+.|++.+..-.. +..+...+++|+.|+|++|.|+. .++    ..++.|+.|+++++. |+. .++.    .++.
T Consensus        94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~-i~~~~~~~----~l~~  163 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNL-ISDISGLE----SLKS  163 (414)
T ss_pred             ccceeeeeccccchhh-cccchhhhhcchheeccccccccccch----hhccchhhheeccCc-chhccCCc----cchh
Confidence            4567777776641111 22223578999999999998876 444    345669999999863 321 1121    1444


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  132 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~  132 (252)
                      |+.+       .++++.+....-.. ...+++|+.+.+++|.+..
T Consensus       164 L~~l-------~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  164 LKLL-------DLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhcc-------cCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            5555       44444433322211 3578888888888887443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.72  E-value=0.056  Score=41.47  Aligned_cols=92  Identities=25%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             HHHHHHHhcC---CCccEEeccCCCCC-CHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH----HHHhcCCCCc
Q 025444           50 SIVAQIAGRL---SAVTFLDLSYCSKI-GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN----AIASTMPKLK  121 (252)
Q Consensus        50 ~~l~~l~~~~---~~L~~L~Ls~c~~i-~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~----~l~~~~~~L~  121 (252)
                      .++...+++|   ..+..++|+.|... -.+++..+.+ -.+|+..       +     +.+.++.    .+...+|.++
T Consensus        14 rgV~evVercedakE~h~ldLssc~lm~i~davy~l~~-~~el~~i-------~-----ls~N~fk~fp~kft~kf~t~t   80 (177)
T KOG4579|consen   14 RGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSK-GYELTKI-------S-----LSDNGFKKFPKKFTIKFPTAT   80 (177)
T ss_pred             hhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhC-CceEEEE-------e-----cccchhhhCCHHHhhccchhh
Confidence            4556666666   46788899998533 1222222222 2222222       2     2333333    4455678999


Q ss_pred             EEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          122 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       122 ~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      .|+|+.|.|++.-..  +...|.|++|++++.+..
T Consensus        81 ~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   81 TLNLANNEISDVPEE--LAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hhhcchhhhhhchHH--HhhhHHhhhcccccCccc
Confidence            999999999886555  457999999999986544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.03  E-value=0.19  Score=23.78  Aligned_cols=12  Identities=17%  Similarity=0.515  Sum_probs=4.8

Q ss_pred             CCcEEEecCccc
Q 025444          119 KLKRLEMAYHVI  130 (252)
Q Consensus       119 ~L~~L~L~~~~i  130 (252)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555543

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.77  E-value=0.45  Score=42.84  Aligned_cols=107  Identities=20%  Similarity=0.138  Sum_probs=57.6

Q ss_pred             HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCC---HHHHHHHHhh
Q 025444            8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG---APALEAIGKH   84 (252)
Q Consensus         8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~---~~~l~~l~~~   84 (252)
                      ...++|..|++++.+-...-..+ .....|+.|+++.|++..  +..++-....|+.+-.++ ..++   ..++.    .
T Consensus       432 ~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~--lP~~~y~lq~lEtllas~-nqi~~vd~~~l~----n  503 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRM--LPECLYELQTLETLLASN-NQIGSVDPSGLK----N  503 (565)
T ss_pred             Hhhhcceeeecccchhhhcchhh-hhhhhhheeccccccccc--chHHHhhHHHHHHHHhcc-ccccccChHHhh----h
Confidence            44678999999985322211112 234459999999985432  222222223344443443 2232   22232    3


Q ss_pred             CchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444           85 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus        85 ~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it  131 (252)
                      +.+|++|.++-.       .+  ..+-.+..+|.+|++|.|+||++.
T Consensus       504 m~nL~tLDL~nN-------dl--q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQNN-------DL--QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCCC-------ch--hhCChhhccccceeEEEecCCccC
Confidence            344666644322       11  112233468999999999999965

>PRK15386 type III secretion protein GogB; Provisional

Probab=87.89  E-value=0.92  Score=41.18  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccC
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY   69 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~   69 (252)
                      ..+|++|.+++|..-..+...  -.++|+.|.+.+| .+.     .+   -+.|+.|.|+.
T Consensus        71 P~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~  121 (426)
T PRK15386         71 PNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHCPEIS-----GL---PESVRSLEIKG  121 (426)
T ss_pred             CCCCcEEEccCCCCcccCCch--hhhhhhheEccCccccc-----cc---ccccceEEeCC
Confidence            457999999987442222221  1358999999998 553     11   35788888865

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=86.37  E-value=0.34  Score=43.37  Aligned_cols=37  Identities=22%  Similarity=0.153  Sum_probs=27.5

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  152 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~  152 (252)
                      .++..|+.|+|.+|+||..+-.+ .+....|..|+|-.
T Consensus       319 ~~ls~L~tL~L~~N~it~~~~~a-F~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  319 QGLSGLKTLSLYDNQITTVAPGA-FQTLFSLSTLNLLS  355 (498)
T ss_pred             hccccceeeeecCCeeEEEeccc-ccccceeeeeehcc
Confidence            46789999999999987654332 34667788888854

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=84.97  E-value=0.5  Score=42.58  Aligned_cols=7  Identities=29%  Similarity=0.648  Sum_probs=3.2

Q ss_pred             CCceecc
Q 025444          169 NLKVLGP  175 (252)
Q Consensus       169 ~L~~L~~  175 (252)
                      .++.|+.
T Consensus        37 ~IRkLge   43 (458)
T PF10446_consen   37 AIRKLGE   43 (458)
T ss_pred             HHhhhhH
Confidence            3444543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.44  E-value=0.18  Score=37.31  Aligned_cols=51  Identities=18%  Similarity=0.260  Sum_probs=15.1

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCc
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  171 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~  171 (252)
                      .+++|+.+.+..+ ++.-+- ....+| +|+.+.+..  .++.-+......|++||
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             T-TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred             ccccccccccCcc-ccEEch-hhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence            4566677766543 221111 113355 666666654  22222333345555553

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.01  E-value=1.2  Score=23.52  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             CCcEEEecCcccCHH-HHHHHHhcCC
Q 025444          119 KLKRLEMAYHVISTE-IVLKILSSCA  143 (252)
Q Consensus       119 ~L~~L~L~~~~it~~-~l~~i~~~~~  143 (252)
                      +|++|.|....+.++ .+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            478888888885444 6888888876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.64  E-value=1.3  Score=41.37  Aligned_cols=75  Identities=27%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             ccCCCCcC-cHHHHHHHhcCCCCcEEEecCc--ccCHH-HHHHHHhcCCCCCEEeccCCCCccC-Ch-----HHHHhcCC
Q 025444           99 DTADKLSQ-DDEANAIASTMPKLKRLEMAYH--VISTE-IVLKILSSCALLEFLDLRGCWDVKL-DD-----KFMKGNFP  168 (252)
Q Consensus        99 ~l~~~~~~-~~~~~~l~~~~~~L~~L~L~~~--~it~~-~l~~i~~~~~~L~~LdL~~C~~i~~-~~-----~~l~~~~~  168 (252)
                      ++++..+. =+.+.+++...|+|+.|+|++|  .+... .+..+  +...|++|-+.|.+-.+. ..     ..+.+.+|
T Consensus       224 ~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FP  301 (585)
T KOG3763|consen  224 SLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFP  301 (585)
T ss_pred             ecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHHHHHhcc
Confidence            34444332 2445578888999999999999  44432 22221  567899999998765542 11     35678999


Q ss_pred             CCceecc
Q 025444          169 NLKVLGP  175 (252)
Q Consensus       169 ~L~~L~~  175 (252)
                      +|..|..
T Consensus       302 KL~~LDG  308 (585)
T KOG3763|consen  302 KLLRLDG  308 (585)
T ss_pred             hheeecC
Confidence            9999964

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=83.62  E-value=0.74  Score=23.14  Aligned_cols=9  Identities=67%  Similarity=1.110  Sum_probs=4.4

Q ss_pred             CCEEeccCC
Q 025444          145 LEFLDLRGC  153 (252)
Q Consensus       145 L~~LdL~~C  153 (252)
                      |++|+|++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            444555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 9   SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDL 67
           S   ++ + +S           I      LQ L L    +SD IV  +A + S +  L+L
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNL 149

Query: 68  SYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA- 126
           S CS     AL+ +   C  L  L      L      ++     A+A     + +L ++ 
Sbjct: 150 SGCSGFSEFALQTLLSSCSRLDELN-----LSWCFDFTEKHVQVAVAHVSETITQLNLSG 204

Query: 127 -YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVL 173
               +    +  ++  C  L  LDL     V L +   +       L+ L
Sbjct: 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEFFQLNYLQHL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 14/146 (9%)

Query: 6   ITRSSGSLRKLCVSG---LHNDMMFSLIAENAGSLQTLRLP--RSEMSDSIVAQIAGRLS 60
           +  S   L +L +S         +   +A  + ++  L L   R  +  S ++ +  R  
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222

Query: 61  AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 120
            +  LDLS    +     +        L  L      L     +   +    +   +P L
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLS-----LSRCYDII-PETLLELGE-IPTL 274

Query: 121 KRLEMAYHVISTEIVLKILSSCALLE 146
           K L++ + ++    +  +  +   L+
Sbjct: 275 KTLQV-FGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 45  SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL 104
             + D ++  I   L     L +S   K     L +     + L +  +N+HP  T   L
Sbjct: 10  DSLPDELLLGIFSCLCLPELLKVSGVCK-RWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68

Query: 105 SQD-----------DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153
           SQ            D+  A   +  +++ ++++  VI    +  ILS C+ L+ L L G 
Sbjct: 69  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128

Query: 154 WDVKLDDKFMK--GNFPNLKVL 173
              +L D  +       NL  L
Sbjct: 129 ---RLSDPIVNTLAKNSNLVRL 147

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 19/180 (10%)

Query: 6   ITRSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSI--------VAQIA 56
           + +    L  + V      +     I     +L   RL   +  + I        V  + 
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432

Query: 57  GRLSAVTFLDLSY-CSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 115
                +           +    L  IG++   +  +               D+     + 
Sbjct: 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-------DEGLMEFSR 485

Query: 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNLKVL 173
             P L++LEM     S   +   ++    L +L ++G          M     + N++++
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 4e-12
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 16/179 (8%)

Query: 9   SSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLD 66
           +    RKLC  GL         ++   A  ++ L L  + +       +  +   +  L+
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 67  LSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADKLSQDDEANAIASTMPKLKR 122
                 IG   LE + ++CK L  L      +   ++  + L       A+A    +L+ 
Sbjct: 325 TRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 123 LEMAYHVISTEIVLKILSSCALLEFLDLRGCW------DVKLDDKFMKG--NFPNLKVL 173
           + +    I+ E +  I +    L    L          D+ LD+           L+  
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 9e-12
 Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAG---------------SLQTLRLPRS 45
             + L  R   +LR L + G     MF+LI EN G                L+++   R 
Sbjct: 64  TPDRLSRRFP-NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122

Query: 46  EMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL 104
            +SD  + ++A  R   +  L L  CS      L +I  HC+ +  L          D  
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD-- 180

Query: 105 SQDDEANAIASTMPKLKRLEMAY---HVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 161
                 + +A     L+ L         IS + +  I  +C  L  + +       L+  
Sbjct: 181 --GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF--EILELV 236

Query: 162 FMKGNFPNLKVLG 174
                  NL+   
Sbjct: 237 GFFKAAANLEEFC 249

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 24/193 (12%), Positives = 61/193 (31%), Gaps = 29/193 (15%)

Query: 6   ITRSSGSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRL---PRSEMSDSIVAQIAGR 58
           I      ++ L +               +A++  SL+ L       +++S   +  IA  
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 59  LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS------------- 105
             ++  + +     +          + +       N         ++             
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 106 --QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM 163
               +E   +     ++++L++ Y ++ TE    ++  C  LE L+ R      + D+ +
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV----IGDRGL 334

Query: 164 KG---NFPNLKVL 173
           +        LK L
Sbjct: 335 EVLAQYCKQLKRL 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 29/168 (17%)

Query: 6   ITRSSGSLRKLCVSGLHN---------DMMFSLIAENAGSLQTLRLPR--SEMSDSIVAQ 54
           I     +L    +  L           D     +      L+          ++D  ++ 
Sbjct: 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457

Query: 55  IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ----DDEA 110
           I      V ++ L Y        L    + C  L  L            +      +   
Sbjct: 458 IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE-----------MRGCCFSERAI 505

Query: 111 NAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDLRGCWDV 156
            A  + +P L+ L +  +  S     ++++      +E +  R   +V
Sbjct: 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 36  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG-------------APALEAIG 82
           S     +  +    +   +++ R   +  L L    +                P +  I 
Sbjct: 49  SETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS 108

Query: 83  KHCKLLVVL-CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY-HVISTEIVLKILS 140
            + + L  +  R M   D               +    L+ L++      +T+ +L I++
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDR-------LAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 141 SCALLEFLDLRGCWDVKLDDKFMKG---NFPNLKVLGPFVMDYYEIND 185
            C  ++ L +      + D K++     +  +L+VL  ++ ++ +I+ 
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 11/159 (6%)

Query: 20  GLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE 79
           G +       ++ +   L+ +RL R  ++D  +  IA        L LS C       L 
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 80  AIGKHCKLLVVLCRNMHPLDTADKLSQDDEA-NAIASTMPKLKRLEMAYH--VISTEIVL 136
           AI   C+ L  L      L  +D         +    T   L  L ++     +S   + 
Sbjct: 150 AIAATCRNLKELD-----LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204

Query: 137 KILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLG 174
           ++++ C  L+ L L     V L+    +    P L+ LG
Sbjct: 205 RLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELG 241

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 43/208 (20%)

Query: 6   ITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEM---------SDSIVAQIA 56
           +      L++L V     D    ++A     L+ LR+  SE          ++  +  ++
Sbjct: 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368

Query: 57  GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADKLSQDDEANA 112
                +  + L +C ++   AL  I ++   +            P     +   D    A
Sbjct: 369 MGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-DIGFGA 426

Query: 113 IASTMPKLKRLEMAYHV------------------------ISTEIVLKILSSCALLEFL 148
           I      L+RL ++  +                         S   +  +LS C  L  L
Sbjct: 427 IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486

Query: 149 DLRGCWDVKLDDKFMK--GNFPNLKVLG 174
           ++R C     D   +        ++ L 
Sbjct: 487 EIRDCP--FGDKALLANASKLETMRSLW 512

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 6   ITRSSGSLRKLCVSGLH---NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAV 62
              +  SL  L +S L    +      +     +L++L+L R+      +A +  R   +
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQL 237

Query: 63  TFLDLSYCSKIGAP----ALEAIGKHCKLLVVL--CRNMHPLDTADKLSQDDEANAIAST 116
             L     +    P     L      CK L  L    +                 A+ S 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV----------PAYLPAVYSV 287

Query: 117 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW-DVKLDDKFMKGNFPNLKVL 173
             +L  L ++Y  + +  ++K+L  C  L+ L +     D  L  + +     +L+ L
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL--EVLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 6/163 (3%)

Query: 1   MVEMLITRSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGR 58
           +   L    SG     C+SG  +        +      L TL L  + +    + ++  +
Sbjct: 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 59  LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ--DDEANAIAST 116
              +  L +     I    LE +   CK L  L          +      +    +++  
Sbjct: 313 CPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 117 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD 159
            PKL+ +      ++   ++ I  +   +    L        D
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 6   ITRSSGSLRKLCVSGLHN-----------DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQ 54
           I R+  ++ +  +  +             D+ F  I E+   L+ L L    ++D +   
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEY 450

Query: 55  IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADKLSQDDEA 110
           I      +  L +++        +  +   C  L  L    C              D   
Sbjct: 451 IGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFG-----------DKAL 498

Query: 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL--EFLDLRGCWDVKLDD 160
            A AS +  ++ L M+   +S      +      L  E +D RG  D + + 
Sbjct: 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 10/148 (6%)

Query: 36  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL---- 91
                ++          A +  R   V  ++L          L   G    +   +    
Sbjct: 42  RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS 101

Query: 92  --CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY-HVISTEIVLKILSSCALLEFL 148
                +  +     +  DD    IA +    K L ++     ST+ +  I ++C  L+ L
Sbjct: 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161

Query: 149 DLRGCWDVKLDDKFMK---GNFPNLKVL 173
           DLR      +   ++      + +L  L
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSL 189

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 23/173 (13%)

Query: 9   SSGSLRKLCVSGLHNDMMFSLIAENAGS---LQTLRLPRSEMSDSIVAQIAGRLSAVTFL 65
               +  + +S    ++ FS ++ +  S   L++L L  S ++ S+        +++T L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSL 105

Query: 66  DLSYCSKIGA-PALEAIGKHCKLLVVL--CRNMHPLDTADKLSQDDEANAIASTMPKLKR 122
           DLS  S  G    L ++G  C  L  L    N         L    + +     +  L+ 
Sbjct: 106 DLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSN--------TLDFPGKVSGGLK-LNSLEV 155

Query: 123 LEMAYHVISTEI--VLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 173
           L+++ + IS        +   C  L+ L + G    K+          NL+ L
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFL 205

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 23/171 (13%), Positives = 47/171 (27%), Gaps = 34/171 (19%)

Query: 6   ITRSSGSLRKLCVSGLHNDM-MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTF 64
           + R    +R         D         +   +Q +    S +       + G L  V  
Sbjct: 31  LLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEG-LQYVEK 89

Query: 65  LDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE 124
           + L  C  I    LE + +   L                                +  +E
Sbjct: 90  IRLCKCHYIEDGCLERLSQLENL-----------------------------QKSMLEME 120

Query: 125 MAYHVISTEIVLKILSSCALLEFLDLRGCW---DVKLDDKFMKGNFPNLKV 172
           +      T+  +  L     L++L L       + +   +  K + P+L++
Sbjct: 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 36  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 95
            +Q+L +   E+SD+  A++   L     + L  C  +     + I      L V    +
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDI---SSALRV-NPAL 58

Query: 96  HPLDTADKLS----QDDEANAIASTM----PKLKRLEMAYHVISTEIVLKI---LSSCAL 144
             L+    L      D   + +   +     K+++L +    ++      +   L +   
Sbjct: 59  AELN----LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 145 LEFLDLRGCWDVKLDDKFMK 164
           L+ L L       L D  ++
Sbjct: 115 LQELHLSDN---LLGDAGLQ 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 61/240 (25%)

Query: 13  LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS--YC 70
           L+KL       D  ++     +     ++L    +   +   +  +      L L     
Sbjct: 202 LQKLL---YQIDPNWT---SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 71  SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 130
           +K       A    CK+L+          T  K       + +++       L+     +
Sbjct: 256 AKA----WNAFNLSCKILLT---------TRFK----QVTDFLSAATTTHISLDHHSMTL 298

Query: 131 STEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP-NLKVLGPFVMDYYEINDWDDC 189
           + + V  +L         DL          + +    P  L ++   + D   +  WD+ 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESIRD--GLATWDN- 346

Query: 190 SDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELR--FYD-GI-EEDAGI 245
                      W+ +     + D    I E   +    LE  E R  F    +    A I
Sbjct: 347 -----------WKHV-----NCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.4
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.99
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.72
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.67
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.6
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.51
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.47
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.36
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.3
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.29
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.2
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.16
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.0
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.98
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.86
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.61
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.03
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.86
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.69
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	89.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	85.26

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=7.9e-17  Score=139.38  Aligned_cols=158  Identities=20%  Similarity=0.176  Sum_probs=117.8

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +++|++|+++++ .++..+..+...+++|++|+|++|.+++.....+. ++++|++|+|++|..+++.++..+...+++|
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            477888888887 45555777777888888888888888877666664 5888888888888778887777777778887


Q ss_pred             hhhcccCeecccCCC-CcCcHHHHHHHhcCC-CCcEEEecCc--ccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH
Q 025444           89 VVLCRNMHPLDTADK-LSQDDEANAIASTMP-KLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  164 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~-~~~~~~~~~l~~~~~-~L~~L~L~~~--~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~  164 (252)
                      +.|       ++++| .+++.++..+...+| +|++|+|++|  .+++.++..++.++++|++|+|++|..++...-...
T Consensus       171 ~~L-------~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          171 DEL-------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             CEE-------ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             CEE-------cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence            766       55666 666666666666788 8888888888  578777877778888888888888876643332223


Q ss_pred             hcCCCCceecc
Q 025444          165 GNFPNLKVLGP  175 (252)
Q Consensus       165 ~~~~~L~~L~~  175 (252)
                      ..+++|+.|..
T Consensus       244 ~~l~~L~~L~l  254 (336)
T 2ast_B          244 FQLNYLQHLSL  254 (336)
T ss_dssp             GGCTTCCEEEC
T ss_pred             hCCCCCCEeeC
Confidence            45677777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=8e-17  Score=142.45  Aligned_cols=160  Identities=16%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             HcCCCccEEEecCC-CCHHHHHHHH---HhC---------CCCcEEEccCCCCCHHHHHH---HHhcCCCccEEeccCCC
Q 025444            8 RSSGSLRKLCVSGL-HNDMMFSLIA---ENA---------GSLQTLRLPRSEMSDSIVAQ---IAGRLSAVTFLDLSYCS   71 (252)
Q Consensus         8 ~~~~~L~~L~l~~~-~~d~~l~~i~---~~~---------~~L~~L~L~~~~i~~~~l~~---l~~~~~~L~~L~Ls~c~   71 (252)
                      ..+++|++|+++++ .++.....++   ..+         ++|++|+|++|.+++.++..   .+..+++|++|++++| 
T Consensus       119 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-  197 (386)
T 2ca6_A          119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-  197 (386)
T ss_dssp             HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-
T ss_pred             HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-
Confidence            45788999999987 3333333332   334         88999999999888666554   4457889999999986 


Q ss_pred             CCCHHHHHHHHh----hCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHhc---
Q 025444           72 KIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS---  141 (252)
Q Consensus        72 ~i~~~~l~~l~~----~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~~---  141 (252)
                      .+++.++..+..    .+++|+.|       +++++.+++.++..++   ..+++|++|+|++|.|++.+...+...   
T Consensus       198 ~l~~~g~~~l~~~~l~~~~~L~~L-------~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLAYCQELKVL-------DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEE-------ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             CCCHhHHHHHHHHHhhcCCCccEE-------ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            688877766665    44445444       6667777666555443   467888888888888888776655442   


Q ss_pred             --CCCCCEEeccCCCCccC----ChHHHHhcCCCCceecc
Q 025444          142 --CALLEFLDLRGCWDVKL----DDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       142 --~~~L~~LdL~~C~~i~~----~~~~l~~~~~~L~~L~~  175 (252)
                        +++|++|+|++|.....    -...+...+++|+.|..
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence              78888888888743311    11233355788888864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=8e-17  Score=149.46  Aligned_cols=166  Identities=20%  Similarity=0.271  Sum_probs=120.9

Q ss_pred             HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccC----------C-CCCHHHHHHHHhcCCCccEEeccCCCCCCHH
Q 025444            8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR----------S-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP   76 (252)
Q Consensus         8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~----------~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~   76 (252)
                      ..+++|++|+++++.++..+..++..+++|++|+|.+          | .+++.++..++..|++|++|++ +|+.+++.
T Consensus       315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~  393 (592)
T 3ogk_B          315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNE  393 (592)
T ss_dssp             TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHH
T ss_pred             HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHH
Confidence            4567777777776666666777777777788888773          4 7777777777777777888877 44677777


Q ss_pred             HHHHHHhhCchhhhhccc--------------------------CeecccCCCC--cCcHHHHHHHhcCCCCcEEEecCc
Q 025444           77 ALEAIGKHCKLLVVLCRN--------------------------MHPLDTADKL--SQDDEANAIASTMPKLKRLEMAYH  128 (252)
Q Consensus        77 ~l~~l~~~~~~L~~L~~~--------------------------l~~l~l~~~~--~~~~~~~~l~~~~~~L~~L~L~~~  128 (252)
                      ++..++..|++|+.|.+.                          ++.++++.|.  +++..+..++..+++|++|+|++|
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            777777777777777552                          1223343333  567777788877899999999988


Q ss_pred             ccCHHHHHHHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceecc
Q 025444          129 VISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP  175 (252)
Q Consensus       129 ~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~~  175 (252)
                      .+++.++..++.+|++|++|+|++|. ++..+ ..+...+++|+.|..
T Consensus       474 ~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          474 GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred             CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence            89988888888899999999999987 53222 344567888888865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1.5e-16  Score=140.65  Aligned_cols=138  Identities=15%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             cCCCccEEEecCC-CCHH---HHHHHHHhCCCCcEEEccCCCCCHHHHHHHHh---cC---------CCccEEeccCCCC
Q 025444            9 SSGSLRKLCVSGL-HNDM---MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG---RL---------SAVTFLDLSYCSK   72 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~---~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~---~~---------~~L~~L~Ls~c~~   72 (252)
                      .+++|++|+++++ .++.   .+......+++|++|+|++|.+++.+...+..   .+         ++|++|+|++| .
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~  170 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-R  170 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-C
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-C
Confidence            4677788887775 3332   23333456777888888777776655444432   23         77888888775 4


Q ss_pred             CCHHHHHHHHh---hCchhhhhcccCeecccCCCCcCcHHHHHHHh----cCCCCcEEEecCcccCHHHHHHH---HhcC
Q 025444           73 IGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKI---LSSC  142 (252)
Q Consensus        73 i~~~~l~~l~~---~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~----~~~~L~~L~L~~~~it~~~l~~i---~~~~  142 (252)
                      ++..++..++.   .+++|+.|       .++++.+.+.++.+++.    .+++|++|+|++|.+++.++..+   +..+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L-------~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTV-------KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEE-------ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             CCcHHHHHHHHHHHhCCCcCEE-------ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            66555555444   34444443       56666666666555443    57778888888777776554433   4567


Q ss_pred             CCCCEEeccCCC
Q 025444          143 ALLEFLDLRGCW  154 (252)
Q Consensus       143 ~~L~~LdL~~C~  154 (252)
                      ++|++|+|++|.
T Consensus       244 ~~L~~L~L~~n~  255 (386)
T 2ca6_A          244 PNLRELGLNDCL  255 (386)
T ss_dssp             TTCCEEECTTCC
T ss_pred             CCcCEEECCCCC
Confidence            778888887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.8e-16  Score=137.10  Aligned_cols=160  Identities=20%  Similarity=0.339  Sum_probs=127.7

Q ss_pred             HHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhh
Q 025444            7 TRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH   84 (252)
Q Consensus         7 ~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~   84 (252)
                      ...+++|++|+++++ .++.....++ .+++|++|+|++| .+++.++..++..+++|++|+|++|..+++.++..+...
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            356899999999998 5566566565 5999999999999 899988999888999999999999878998888888888


Q ss_pred             Cc-hhhhhcccCeecccCCC--CcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCCh
Q 025444           85 CK-LLVVLCRNMHPLDTADK--LSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD  160 (252)
Q Consensus        85 ~~-~L~~L~~~l~~l~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~  160 (252)
                      +| +|+.|       +++++  .+++..+..+...+|+|++|+|++|. +++..+..+ ..+++|++|+|++|..++..+
T Consensus       193 l~~~L~~L-------~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          193 VSETITQL-------NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             SCTTCCEE-------ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGG
T ss_pred             cccCCCEE-------EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHH
Confidence            88 88877       55565  45566777777789999999999999 887776654 478999999999998663333


Q ss_pred             HHHHhcCCCCceecc
Q 025444          161 KFMKGNFPNLKVLGP  175 (252)
Q Consensus       161 ~~l~~~~~~L~~L~~  175 (252)
                      -.....+++|+.|..
T Consensus       265 ~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          265 LLELGEIPTLKTLQV  279 (336)
T ss_dssp             GGGGGGCTTCCEEEC
T ss_pred             HHHHhcCCCCCEEec
Confidence            212356888888876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=4.9e-16  Score=144.16  Aligned_cols=168  Identities=14%  Similarity=0.165  Sum_probs=127.3

Q ss_pred             HHHcCCCccEEEecC----------C--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEecc---CC
Q 025444            6 ITRSSGSLRKLCVSG----------L--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS---YC   70 (252)
Q Consensus         6 i~~~~~~L~~L~l~~----------~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls---~c   70 (252)
                      +...|++|++|++++          |  .++..+..++..+++|++|.+..+.+++.++..++..+++|++|+++   .|
T Consensus       337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence            345677788888873          3  55666777777778888888765677777777777667777777776   34


Q ss_pred             CCCCH----HHHHHHHhhCchhhhhccc--------------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEec
Q 025444           71 SKIGA----PALEAIGKHCKLLVVLCRN--------------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMA  126 (252)
Q Consensus        71 ~~i~~----~~l~~l~~~~~~L~~L~~~--------------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~  126 (252)
                      +.+++    .++..+...|++|+.|.+.                    ++.+.++++.+++.++..++..|++|++|+|+
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            55664    4566666667776666541                    34557788888888888888899999999999


Q ss_pred             CcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceec
Q 025444          127 YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLG  174 (252)
Q Consensus       127 ~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~  174 (252)
                      +|.+++.++..++..+++|++|+|++|. ++..+ ..+.+.+|.++...
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~  544 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIEL  544 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEE
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEE
Confidence            9999999999999999999999999997 65554 56677788776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=1.4e-15  Score=141.08  Aligned_cols=141  Identities=20%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             HHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEecc-----CCCCCC----HHHHHHHHhhCchhhhhcccCe
Q 025444           26 MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS-----YCSKIG----APALEAIGKHCKLLVVLCRNMH   96 (252)
Q Consensus        26 ~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls-----~c~~i~----~~~l~~l~~~~~~L~~L~~~l~   96 (252)
                      .+..++..+++|++|.+..+.+++.++..++..+++|+.|+|+     +|..++    +.++..+...|++|+.|     
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L-----  437 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-----  437 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE-----
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE-----
Confidence            3333333344444443333344444444444444444444444     344444    34444444444444444     


Q ss_pred             ecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceecc
Q 025444           97 PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP  175 (252)
Q Consensus        97 ~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~~  175 (252)
                        ++++ .+++.++..++..+++|++|+|++|.+++.++..++.+|++|++|+|++|.. +..+ ..+...+++|+.|..
T Consensus       438 --~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          438 --SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             --ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEE
T ss_pred             --eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEee
Confidence              3333 4556666666666777777777777777777777777777777777777754 2212 223445666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=1.2e-15  Score=141.51  Aligned_cols=159  Identities=19%  Similarity=0.175  Sum_probs=134.1

Q ss_pred             HHHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEcc-----CC-CCC----HHHHHHHHhcCCCccEEeccCCCCCC
Q 025444            6 ITRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLP-----RS-EMS----DSIVAQIAGRLSAVTFLDLSYCSKIG   74 (252)
Q Consensus         6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~-----~~-~i~----~~~l~~l~~~~~~L~~L~Ls~c~~i~   74 (252)
                      +...|++|+.|.++.. .++..+..++..+++|+.|+|.     +| .++    +.++..++..|++|+.|+|++  .++
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~  444 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLT  444 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCC
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--ccc
Confidence            3455788888866553 6788888898899999999999     44 888    789999999999999999977  799


Q ss_pred             HHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           75 APALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        75 ~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      +.++..++..+++|+.|       +++++.+++.++.+++..+++|++|+|++|.+++.++..++..+++|++|+|++|.
T Consensus       445 ~~~~~~l~~~~~~L~~L-------~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEML-------SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHHHHHHCTTCCEE-------EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             HHHHHHHHHhchhccEe-------eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            99999999989998877       55677788888989988999999999999999999999899899999999999997


Q ss_pred             CccCCh-HHHHhcCCCCceec
Q 025444          155 DVKLDD-KFMKGNFPNLKVLG  174 (252)
Q Consensus       155 ~i~~~~-~~l~~~~~~L~~L~  174 (252)
                      . +..+ +.+.+.+|++++..
T Consensus       518 ~-~~~~~~~l~~~lp~l~i~~  537 (594)
T 2p1m_B          518 V-SFGACKLLGQKMPKLNVEV  537 (594)
T ss_dssp             C-BHHHHHHHHHHCTTEEEEE
T ss_pred             C-CHHHHHHHHHhCCCCEEEE
Confidence            6 3333 55667788886643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.61  E-value=6.9e-16  Score=121.94  Aligned_cols=107  Identities=17%  Similarity=0.202  Sum_probs=84.9

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      .+|++|+|++|.|++.|+..+ ..|++|++|+|++|..||+.++..|+..    +                         
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~----~-------------------------  110 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL----E-------------------------  110 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC----H-------------------------
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc----c-------------------------
Confidence            368888888888888888777 5788888888888888888888877751    0                         


Q ss_pred             hcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCCh---HHHHhcCCCCce
Q 025444          115 STMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKV  172 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~---~~l~~~~~~L~~  172 (252)
                      ..+++|++|+|++|. ||+.++..+. .|++|++|+|++|+.++..+   ..+.+..|++++
T Consensus       111 ~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          111 NLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             cccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            024568899999998 9999998876 68999999999999997654   456778888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.51  E-value=2.1e-14  Score=113.37  Aligned_cols=102  Identities=12%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhhC
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHC   85 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~   85 (252)
                      -+|++|++++| +++..+..+. .|++|++|+|++| .|||.++..++..   +++|++|+|++|+.||+.++..++   
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~---  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH---  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG---
T ss_pred             ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh---
Confidence            46999999998 8888888884 8999999999999 8999999999863   678999999999999999987764   


Q ss_pred             chhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHH--HHHHhcCCCCC
Q 025444           86 KLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIV--LKILSSCALLE  146 (252)
Q Consensus        86 ~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l--~~i~~~~~~L~  146 (252)
                                                    .|++|++|+|++|. ||+.++  ..+-+.+|+++
T Consensus       137 ------------------------------~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          137 ------------------------------HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             ------------------------------GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             ------------------------------cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence                                          35666777777777 776553  33444666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=120.86  Aligned_cols=140  Identities=12%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             HHHcCCCccEEEecCC-CCHHHHHHHHHh----CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH
Q 025444            6 ITRSSGSLRKLCVSGL-HNDMMFSLIAEN----AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA   80 (252)
Q Consensus         6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~----~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~   80 (252)
                      +....++|+.|+++++ +++.....++..    +++|++|+|++|.+++.++..++..+++|++|+|++| .+++.++..
T Consensus        67 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~  145 (372)
T 3un9_A           67 SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD  145 (372)
T ss_dssp             HHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred             HHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence            3334456666666665 343333333222    2466666666666666666666655666666666664 466666555


Q ss_pred             HHhh----CchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHH---hcCCCCCEEec
Q 025444           81 IGKH----CKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDL  150 (252)
Q Consensus        81 l~~~----~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~---~~~~~L~~LdL  150 (252)
                      ++..    +++|+.|       ++++|.+++.++.+++   ..+++|++|+|++|.|++.++..+.   ..+++|+.|+|
T Consensus       146 L~~~L~~~~~~L~~L-------~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          146 LRDLLLHDQCQITTL-------RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             HHHHHHSTTCCCCEE-------ECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             HHHHHHhcCCcccee-------eCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence            5442    2333333       4455555554444443   2355566666666555555544333   24455666666


Q ss_pred             cCC
Q 025444          151 RGC  153 (252)
Q Consensus       151 ~~C  153 (252)
                      ++|
T Consensus       219 s~N  221 (372)
T 3un9_A          219 AYN  221 (372)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=2.2e-13  Score=120.33  Aligned_cols=149  Identities=13%  Similarity=0.099  Sum_probs=117.4

Q ss_pred             HHHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHh----cCCCccEEeccCCCCCCHHHHHH
Q 025444            6 ITRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG----RLSAVTFLDLSYCSKIGAPALEA   80 (252)
Q Consensus         6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~----~~~~L~~L~Ls~c~~i~~~~l~~   80 (252)
                      +...+.+|++|+++++ +++..+..++..+++|++|+|++|.+++.++..++.    .+++|++|+|++| .+++.++..
T Consensus        96 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~  174 (372)
T 3un9_A           96 LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAV  174 (372)
T ss_dssp             HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHH
T ss_pred             HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHH
Confidence            3334579999999998 678778888888889999999999999988777754    3689999999997 689888888


Q ss_pred             HHhhCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCC
Q 025444           81 IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCW  154 (252)
Q Consensus        81 l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~  154 (252)
                      ++..+...+.|    +.++++++.+.+.++..++   ..+++|++|+|++|.|++.++..++.   .+++|++|+|++|.
T Consensus       175 l~~~L~~~~~L----~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          175 LMEGLAGNTSV----THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHTCSSC----CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHhcCCCc----CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            87543322222    4447888888888877665   35789999999999999988766654   67999999999984


Q ss_pred             CccCCh
Q 025444          155 DVKLDD  160 (252)
Q Consensus       155 ~i~~~~  160 (252)
                       ++..+
T Consensus       251 -i~~~g  255 (372)
T 3un9_A          251 -LSSEG  255 (372)
T ss_dssp             -CCHHH
T ss_pred             -CCHHH
Confidence             54333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.41  E-value=1.9e-12  Score=116.38  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=85.1

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHH----hCCCCcEEEccCCCCCHHHHHHH---HhcCCCccEEeccCCCCCCHHHHHH
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAE----NAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEA   80 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~----~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~L~~L~Ls~c~~i~~~~l~~   80 (252)
                      .+++|++|+++++ .++..+..++.    .+++|++|+|++|.++..++..+   ..++++|++|+|++| .+++.++..
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~  303 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARL  303 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHH
Confidence            5788999999987 44545554443    47889999999998888774443   445889999999985 578777777


Q ss_pred             HHhhC----chhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHhc----CCCCCEEe
Q 025444           81 IGKHC----KLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS----CALLEFLD  149 (252)
Q Consensus        81 l~~~~----~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~~----~~~L~~Ld  149 (252)
                      ++..+    ++|+.|       ++++|.+++.++.+++   ..+++|++|+|++|.+++.++..+...    +++|++|+
T Consensus       304 l~~~l~~~~~~L~~L-------~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          304 LCETLLEPGCQLESL-------WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHTSTTCCCCEE-------ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             HHHHhccCCccceee-------EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            66542    355555       4444444444333222   234555555555555555544444331    44555555


Q ss_pred             ccCC
Q 025444          150 LRGC  153 (252)
Q Consensus       150 L~~C  153 (252)
                      |++|
T Consensus       377 L~~n  380 (461)
T 1z7x_W          377 LADC  380 (461)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            5555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.41  E-value=3.2e-12  Score=114.86  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=90.3

Q ss_pred             HcCCCccEEEecCC-CCHHH---HHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCC----CccEEeccCCCCCCHHHHH
Q 025444            8 RSSGSLRKLCVSGL-HNDMM---FSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALE   79 (252)
Q Consensus         8 ~~~~~L~~L~l~~~-~~d~~---l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~----~L~~L~Ls~c~~i~~~~l~   79 (252)
                      ..+++|++|+++++ .++..   +......+++|++|+|++|.+++.++..++..++    +|++|+|++| .++..++.
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~  103 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG  103 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence            34566777777665 34332   3333345667777777776666666666665555    5777777765 36655544


Q ss_pred             HHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhc----CCCCcEEEecCcccCHHHH---HHHHhcCCCCCEEeccC
Q 025444           80 AIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST----MPKLKRLEMAYHVISTEIV---LKILSSCALLEFLDLRG  152 (252)
Q Consensus        80 ~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~----~~~L~~L~L~~~~it~~~l---~~i~~~~~~L~~LdL~~  152 (252)
                      .+.....+++.|    +.++++++.+.+.++.+++..    .++|++|++++|.++..++   ...+..+++|++|++++
T Consensus       104 ~l~~~l~~~~~L----~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          104 VLSSTLRTLPTL----QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             HHHHHTTSCTTC----CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHccCCce----eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence            444333222222    334566666666655555543    3567777777777666443   33344677777777777


Q ss_pred             CCCccCCh-HHHH----hcCCCCceecc
Q 025444          153 CWDVKLDD-KFMK----GNFPNLKVLGP  175 (252)
Q Consensus       153 C~~i~~~~-~~l~----~~~~~L~~L~~  175 (252)
                      |. ++..+ ..+.    ...++|+.|..
T Consensus       180 n~-i~~~~~~~l~~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          180 ND-INEAGVRVLCQGLKDSPCQLEALKL  206 (461)
T ss_dssp             SB-CHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             CC-cchHHHHHHHHHHhcCCCCceEEEc
Confidence            64 32221 2222    23456777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.40  E-value=5.7e-12  Score=100.49  Aligned_cols=126  Identities=13%  Similarity=0.120  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHh---cCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecc
Q 025444           24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   99 (252)
Q Consensus        24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~   99 (252)
                      ...+..+...+++|++|+|++| .|++.++..++.   .+++|++|+|++| .|++.++..++..++..+.|    +.++
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L----~~L~   99 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL----KSLN   99 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSC----CEEE
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCc----CEEE
Confidence            4456777778999999999999 999988777754   4689999999996 69999988888764433333    5568


Q ss_pred             cCCCCcCcHHHHHHHhc---CCCCcEEEe--cCcccCHHHHHHHH---hcCCCCCEEeccCCC
Q 025444          100 TADKLSQDDEANAIAST---MPKLKRLEM--AYHVISTEIVLKIL---SSCALLEFLDLRGCW  154 (252)
Q Consensus       100 l~~~~~~~~~~~~l~~~---~~~L~~L~L--~~~~it~~~l~~i~---~~~~~L~~LdL~~C~  154 (252)
                      ++++.+.+.++.+++..   .++|++|+|  ++|.|++.++..+.   +.++.|++|+|++|.
T Consensus       100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            88999999999888754   578999999  88999999866554   477999999999974

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.31  E-value=7.9e-12  Score=109.53  Aligned_cols=141  Identities=14%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             CccEEEecCC-CCH---HHHHHHHHh-CCCCcEEEccCCCCCHH---HHHHHHhcC-CCccEEeccCCCCCCHHHHHHHH
Q 025444           12 SLRKLCVSGL-HND---MMFSLIAEN-AGSLQTLRLPRSEMSDS---IVAQIAGRL-SAVTFLDLSYCSKIGAPALEAIG   82 (252)
Q Consensus        12 ~L~~L~l~~~-~~d---~~l~~i~~~-~~~L~~L~L~~~~i~~~---~l~~l~~~~-~~L~~L~Ls~c~~i~~~~l~~l~   82 (252)
                      +|++|+++++ .++   ..+..+... +++|++|+|++|.+++.   .+......+ ++|++|+|++| .++..+...++
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHH
Confidence            6666666665 222   222222222 26666666666655432   233333334 56666666664 34544444433


Q ss_pred             hh----Cchhhhhcc----------------------cCeecccCCCCcCcHHHHHHH---hcC-CCCcEEEecCcccCH
Q 025444           83 KH----CKLLVVLCR----------------------NMHPLDTADKLSQDDEANAIA---STM-PKLKRLEMAYHVIST  132 (252)
Q Consensus        83 ~~----~~~L~~L~~----------------------~l~~l~l~~~~~~~~~~~~l~---~~~-~~L~~L~L~~~~it~  132 (252)
                      ..    +++|+.|.+                      +++.++++++.+++.+..+++   ..+ ++|++|+|++|.|++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            32    234444421                      233345555555444443332   233 366666666666655


Q ss_pred             HHHHHHHh---c-CCCCCEEeccCC
Q 025444          133 EIVLKILS---S-CALLEFLDLRGC  153 (252)
Q Consensus       133 ~~l~~i~~---~-~~~L~~LdL~~C  153 (252)
                      .++..+..   . +++|++|+|++|
T Consensus       211 ~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          211 KSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             SCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             hHHHHHHHHHhcCCCCceEEECcCC
Confidence            43332222   2 346666666665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=4.2e-11  Score=104.89  Aligned_cols=147  Identities=18%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             HHcCCCccEEEecCC-CCH---HHHHHHHHhCC-CCcEEEccCCCCCHHH---HHHHHhcC-CCccEEeccCCCCCCHHH
Q 025444            7 TRSSGSLRKLCVSGL-HND---MMFSLIAENAG-SLQTLRLPRSEMSDSI---VAQIAGRL-SAVTFLDLSYCSKIGAPA   77 (252)
Q Consensus         7 ~~~~~~L~~L~l~~~-~~d---~~l~~i~~~~~-~L~~L~L~~~~i~~~~---l~~l~~~~-~~L~~L~Ls~c~~i~~~~   77 (252)
                      ....++|++|+++++ .++   ..+......++ +|++|+|++|.+++.+   +..+...+ ++|++|+|++|. ++..+
T Consensus        18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~   96 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS   96 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence            344567999999997 332   22334445677 9999999999887644   44444444 999999999974 66555


Q ss_pred             HHHHHh---hC-chhhhhcc----------------------cCeecccCCCCcCcHHHHHHHh---cCC-CCcEEEecC
Q 025444           78 LEAIGK---HC-KLLVVLCR----------------------NMHPLDTADKLSQDDEANAIAS---TMP-KLKRLEMAY  127 (252)
Q Consensus        78 l~~l~~---~~-~~L~~L~~----------------------~l~~l~l~~~~~~~~~~~~l~~---~~~-~L~~L~L~~  127 (252)
                      ...++.   .+ ++|+.|.+                      +++.++++++.+.+.++..++.   .++ +|++|+|++
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence            444443   33 56666632                      3344455555555444433321   233 566666666


Q ss_pred             cccCHHHH---HHHHhcC-CCCCEEeccCCC
Q 025444          128 HVISTEIV---LKILSSC-ALLEFLDLRGCW  154 (252)
Q Consensus       128 ~~it~~~l---~~i~~~~-~~L~~LdL~~C~  154 (252)
                      |.+++.+.   ...+..+ ++|+.|+|++|.
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            65543332   2233344 366666666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.22  E-value=2.6e-10  Score=90.81  Aligned_cols=121  Identities=10%  Similarity=0.099  Sum_probs=97.1

Q ss_pred             cCCCccEEEecCC--CCHHHHHHHH---HhCCCCcEEEccCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHHHH
Q 025444            9 SSGSLRKLCVSGL--HNDMMFSLIA---ENAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEA   80 (252)
Q Consensus         9 ~~~~L~~L~l~~~--~~d~~l~~i~---~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~Ls~c~~i~~~~l~~   80 (252)
                      .+++|++|+++++  +++.....++   ..+++|++|+|++|.|++.|...++   ...++|++|+|++| .|++.++.+
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence            4789999999986  5666555554   4578999999999999998876665   44689999999995 699999999


Q ss_pred             HHhhCchhhhhcccCeeccc--CCCCcCcHHHHHHHh---cCCCCcEEEecCcccCHHH
Q 025444           81 IGKHCKLLVVLCRNMHPLDT--ADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTEI  134 (252)
Q Consensus        81 l~~~~~~L~~L~~~l~~l~l--~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~it~~~  134 (252)
                      ++..+...+.|    +.+++  .++.+.+.++.++++   ..++|++|+|++|.|++.+
T Consensus       113 l~~~L~~n~~L----~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          113 LVEALQSNTSL----IELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHGGGGCSSC----CEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHhCCCc----eEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            98876544433    55677  778899998877764   4689999999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=2e-12  Score=98.94  Aligned_cols=61  Identities=25%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~  175 (252)
                      ..+++|++|++++|.++.......+..+++|++|++++|.-.....  ......+++|+.|..
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            3567777777777776654433445567777777777764332222  134456677776653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.13  E-value=3e-11  Score=106.23  Aligned_cols=159  Identities=14%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             CCCccEEEecCCCC---------HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH
Q 025444           10 SGSLRKLCVSGLHN---------DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE   79 (252)
Q Consensus        10 ~~~L~~L~l~~~~~---------d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~   79 (252)
                      .++|+.|.+.....         ...+..+...+|+|++|+|.++ .+.-   ..+  .+++|++|.|..| .++..++.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~  211 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVE  211 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHH
Confidence            46888888865311         1125566677888888888877 2321   111  3788888888865 57888887


Q ss_pred             HHHh-hCchhhhhcccCeecccCCCCcCcHHHHHHH-hcCCCCcEEEecCcccCHHHHHHHHh--cCCCCCEEeccCCCC
Q 025444           80 AIGK-HCKLLVVLCRNMHPLDTADKLSQDDEANAIA-STMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGCWD  155 (252)
Q Consensus        80 ~l~~-~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~-~~~~~L~~L~L~~~~it~~~l~~i~~--~~~~L~~LdL~~C~~  155 (252)
                      .++. .+|+|+.|.+....-...+..........+. ..+|+|++|.|++|.+++.+...++.  .+|+|++|+|+.+ .
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-V  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-C
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-C
Confidence            7775 5788888765321111111110000001111 24678888888777777766555554  4677888888664 4


Q ss_pred             ccCCh-HHHH---hcCCCCceecc
Q 025444          156 VKLDD-KFMK---GNFPNLKVLGP  175 (252)
Q Consensus       156 i~~~~-~~l~---~~~~~L~~L~~  175 (252)
                      ++..+ ..+.   +.+++|+.|..
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             CChHHHHHHHhhcccCCcceEEEC
Confidence            53322 2332   34566666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.12  E-value=2.8e-12  Score=100.05  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      ++|++|+|++|.+++..+...+..+++|+.|++++|. ++..   .....+++|+.|       +++++.+... +..+.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L-------~Ls~N~l~~~-~~~~~   91 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKL-------ELSENRIFGG-LDMLA   91 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEE-------EEESCCCCSC-CCHHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEE-------ECcCCcCchH-HHHHH
Confidence            4566666666555422232233445566666666543 3321   111123334333       2333332221 11222


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~  175 (252)
                      ..+++|++|+|++|.++.......+..+++|+.|++++|.-.....  ......+++|+.|..
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            3567777777777776553222334466777777777764332222  123455666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.09  E-value=2.9e-11  Score=92.33  Aligned_cols=133  Identities=16%  Similarity=0.197  Sum_probs=96.0

Q ss_pred             HcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444            8 RSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK   86 (252)
Q Consensus         8 ~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~   86 (252)
                      ...++|+.|+++++ .++..+......+++|+.|++++|.++..   .....+++|+.|++++|. ++.. +..+...++
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~   88 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCP   88 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCT
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCC
Confidence            34578999999997 33223444446789999999999977764   444678999999999964 5542 344455677


Q ss_pred             hhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHH--HHHHhcCCCCCEEeccC
Q 025444           87 LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRG  152 (252)
Q Consensus        87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l--~~i~~~~~~L~~LdL~~  152 (252)
                      +|+.|       +++++.+.+.........+++|++|++++|.++....  ...+..+++|+.|++++
T Consensus        89 ~L~~L-------~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           89 NLTHL-------NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCCEE-------ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCEE-------ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            78777       5666666664333334589999999999999775432  24677899999999863

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=4.3e-11  Score=95.90  Aligned_cols=144  Identities=18%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +++|+.|+++++ +++  +.. ...+++|++|++++|.++..  . .+..+++|++|++++| .++......++ .+++|
T Consensus        43 l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L  114 (197)
T 4ezg_A           43 MNSLTYITLANINVTD--LTG-IEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSL  114 (197)
T ss_dssp             HHTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTC
T ss_pred             cCCccEEeccCCCccC--hHH-HhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhc-CCCCC
Confidence            457888888875 221  121 34678888888888866542  1 2356888888888885 45543333332 35555


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      +.|       +++++.+.+.....+. .+++|++|+|++|. +++..   .+..+++|+.|++++|.-....   ....+
T Consensus       115 ~~L-------~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l  180 (197)
T 4ezg_A          115 TLL-------DISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDF  180 (197)
T ss_dssp             CEE-------ECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGC
T ss_pred             CEE-------EecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccC
Confidence            554       5666666665555554 78888888888887 76542   3567888888888887533211   23556


Q ss_pred             CCCceecc
Q 025444          168 PNLKVLGP  175 (252)
Q Consensus       168 ~~L~~L~~  175 (252)
                      ++|+.|..
T Consensus       181 ~~L~~L~l  188 (197)
T 4ezg_A          181 PKLNQLYA  188 (197)
T ss_dssp             SSCCEEEE
T ss_pred             CCCCEEEe
Confidence            77777754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=5.1e-11  Score=92.82  Aligned_cols=137  Identities=18%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             HcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444            8 RSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK   86 (252)
Q Consensus         8 ~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~   86 (252)
                      ...++|++|+++++ .++..+......+++|+.|+|++|.++..   ..+..+++|++|++++|. ++.. +..+...++
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~   95 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLP   95 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCT
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCC
Confidence            34578999999997 33223444446789999999999987763   444678999999999974 5432 344555688


Q ss_pred             hhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHH--HHHHhcCCCCCEEeccCCCCc
Q 025444           87 LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l--~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      +|+.|.+       +++.+.+.........+++|++|++++|.++....  ...+..+++|++|++++|...
T Consensus        96 ~L~~L~L-------s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNL-------SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEEC-------BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEec-------cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            8887744       44444442221222479999999999999765432  246778999999999998654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.99  E-value=6.7e-11  Score=94.77  Aligned_cols=128  Identities=16%  Similarity=0.216  Sum_probs=93.1

Q ss_pred             cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444            9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus         9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .+++|+.|+++++.- ..+..+ ..+++|++|+|++|.++......+ ..+++|+.|++++| .++......++ .+++|
T Consensus        64 ~l~~L~~L~l~~n~~-~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L  138 (197)
T 4ezg_A           64 YAHNIKDLTINNIHA-TNYNPI-SGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKV  138 (197)
T ss_dssp             GCTTCSEEEEESCCC-SCCGGG-TTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSC
T ss_pred             cCCCCCEEEccCCCC-Ccchhh-hcCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCC
Confidence            478999999999721 112222 468999999999998886544444 57899999999996 57765566664 57778


Q ss_pred             hhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           89 VVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      +.|.       ++++. +.+-.  . ...+++|++|++++|.+++..   .+..+++|+.|++++..
T Consensus       139 ~~L~-------L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          139 NSID-------LSYNGAITDIM--P-LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CEEE-------CCSCTBCCCCG--G-GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred             CEEE-------ccCCCCccccH--h-hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence            7774       44443 33322  2 347999999999999987632   45689999999999853

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.99  E-value=6.1e-09  Score=83.52  Aligned_cols=125  Identities=7%  Similarity=0.122  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecc
Q 025444           24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   99 (252)
Q Consensus        24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~   99 (252)
                      +..+..+....+.|++|+|+++ .|.+.|...++..   ...|+.|+|++| .|++.+..+|+..++.=++|    ..++
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL----~~L~  104 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSL----RVLN  104 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSC----CEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCcc----CeEe
Confidence            4567777778899999999986 9999887777654   578999999995 69999988888754443333    5668


Q ss_pred             cCCCCcCcHHHHHHHhcC---CCCcEEEecCc---ccCHHHHHHH---HhcCCCCCEEeccCC
Q 025444          100 TADKLSQDDEANAIASTM---PKLKRLEMAYH---VISTEIVLKI---LSSCALLEFLDLRGC  153 (252)
Q Consensus       100 l~~~~~~~~~~~~l~~~~---~~L~~L~L~~~---~it~~~l~~i---~~~~~~L~~LdL~~C  153 (252)
                      ++++.+.+.++.+|++.+   +.|++|+|+++   .+.+.+...+   ++.-+.|++|+++.+
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            888889999999888665   56999999864   5788765444   456788999999764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.92  E-value=2.8e-09  Score=92.15  Aligned_cols=56  Identities=27%  Similarity=0.201  Sum_probs=27.7

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .+++|++|++++|.++..   ..+..+++|+.|++++|... .........+++|+.|..
T Consensus       263 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEEC
T ss_pred             cCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEEc
Confidence            456666666666665442   12345566666666665322 112222234555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=8.9e-09  Score=90.41  Aligned_cols=138  Identities=18%  Similarity=0.221  Sum_probs=100.7

Q ss_pred             HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHh-cCCCccEEeccCCCC--CCHHHHHHHH--
Q 025444            8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG-RLSAVTFLDLSYCSK--IGAPALEAIG--   82 (252)
Q Consensus         8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~-~~~~L~~L~Ls~c~~--i~~~~l~~l~--   82 (252)
                      ..+|+|++|+|+++..-. +..+  ..++|++|.|..|.++..++..++. .+|+|++|+|+.+..  ..+.++..++  
T Consensus       169 ~~~P~L~~L~L~g~~~l~-l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLS-IGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTCB-CCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCce-eccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            457899999998862111 1111  3789999999999999999988874 699999999964211  1111122222  


Q ss_pred             ---hhCchhhhhcccCeecccCCCCcCcHHHHHHHh--cCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCC
Q 025444           83 ---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS--TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCW  154 (252)
Q Consensus        83 ---~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~  154 (252)
                         ..+|+|+.|       .+.+|.+.+..+.+++.  .+|+|++|+|+.|.+++.++..++.   ++++|+.|+|++|.
T Consensus       246 l~~~~~p~Lr~L-------~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          246 FSKDRFPNLKWL-------GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SCTTTCTTCCEE-------EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HhcCCCCCcCEE-------eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence               246777777       45566677777777764  5899999999999999998887764   58999999999884


Q ss_pred             Cc
Q 025444          155 DV  156 (252)
Q Consensus       155 ~i  156 (252)
                       +
T Consensus       319 -i  319 (362)
T 2ra8_A          319 -L  319 (362)
T ss_dssp             -C
T ss_pred             -C
Confidence             6

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.88  E-value=4.7e-10  Score=97.63  Aligned_cols=36  Identities=14%  Similarity=-0.011  Sum_probs=19.0

Q ss_pred             HhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          139 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       139 ~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      +..+++|+.|+|++|. ++.....+...+++|+.|..
T Consensus       273 l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          273 LNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             HHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             HhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEe
Confidence            4466777777777653 32222222345566666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.85  E-value=2.7e-09  Score=91.41  Aligned_cols=53  Identities=23%  Similarity=0.127  Sum_probs=25.5

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      .+++|++|++++|.++....   +..+++|++|+|++|.-....  . ...+++|+.|.
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~  223 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVT  223 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEE
T ss_pred             CCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--c-ccCCCCCCEEE
Confidence            45555555555555443211   345556666666655322111  1 24455565554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.83  E-value=2.7e-09  Score=92.33  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=101.6

Q ss_pred             HcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444            8 RSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK   86 (252)
Q Consensus         8 ~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~   86 (252)
                      ..+++|+.|+++++ .+....   ...+++|++|+|++|.++....   ...+++|++|++++|. ++.-  .. ...++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~  265 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDI--NA-VKDLT  265 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC--GG-GTTCT
T ss_pred             cCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCC--hh-HhcCC
Confidence            35789999999997 221111   4578999999999997775322   5689999999999974 5431  22 23566


Q ss_pred             hhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhc
Q 025444           87 LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN  166 (252)
Q Consensus        87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~  166 (252)
                      +|+.|       +++++.+..-.   ....+++|++|++++|.++...... +.++++|+.|+|++|.-.... .  ...
T Consensus       266 ~L~~L-------~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~-~--~~~  331 (347)
T 4fmz_A          266 KLKML-------NVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIR-P--LAS  331 (347)
T ss_dssp             TCCEE-------ECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCG-G--GGG
T ss_pred             CcCEE-------EccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCcccccc-C--hhh
Confidence            67666       45555544421   2357999999999999988765443 457999999999998644222 2  467


Q ss_pred             CCCCceecc
Q 025444          167 FPNLKVLGP  175 (252)
Q Consensus       167 ~~~L~~L~~  175 (252)
                      +++|+.|..
T Consensus       332 l~~L~~L~l  340 (347)
T 4fmz_A          332 LSKMDSADF  340 (347)
T ss_dssp             CTTCSEESS
T ss_pred             hhccceeeh
Confidence            889998876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.82  E-value=4.8e-09  Score=89.83  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=96.5

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      .+++|+.|+++++ .++  +.. ...+++|+.|+|++|.++.-  . ....+++|++|++++|. ++.-  .. ...+++
T Consensus        61 ~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~  130 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQ-ITDV--TP-LAGLSN  130 (308)
T ss_dssp             GCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSC-CCCC--GG-GTTCTT
T ss_pred             ccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCC-CCCc--hh-hcCCCC
Confidence            4789999999997 222  111 45789999999999977652  2 24678999999999974 5431  22 245666


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      |+.|       .++++.+.....   ...+++|++|+|++|.++....   +..+++|+.|++++|.-.... .  ...+
T Consensus       131 L~~L-------~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~-~--l~~l  194 (308)
T 1h6u_A          131 LQVL-------YLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS-P--LASL  194 (308)
T ss_dssp             CCEE-------ECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-G--GGGC
T ss_pred             CCEE-------ECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh-h--hcCC
Confidence            7666       444444433222   3478999999999999775322   668999999999997433222 2  4667


Q ss_pred             CCCceecc
Q 025444          168 PNLKVLGP  175 (252)
Q Consensus       168 ~~L~~L~~  175 (252)
                      ++|+.|..
T Consensus       195 ~~L~~L~L  202 (308)
T 1h6u_A          195 PNLIEVHL  202 (308)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEc
Confidence            88888864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=3.5e-09  Score=90.02  Aligned_cols=55  Identities=25%  Similarity=0.219  Sum_probs=32.9

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ..+++|++|++++|.++....   +..+++|+.|+|++|. ++.. .. ...+++|+.|..
T Consensus       153 ~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l-~~-l~~l~~L~~L~l  207 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDL-RA-LAGLKNLDVLEL  207 (291)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBC-GG-GTTCTTCSEEEE
T ss_pred             ccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCC-hh-hccCCCCCEEEC
Confidence            367777777777777654322   5567777777777763 3221 12 345666766653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.81  E-value=1.7e-10  Score=97.35  Aligned_cols=160  Identities=13%  Similarity=-0.000  Sum_probs=73.4

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCC-CCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +++|+.|+++++.-..........+++|++|+|++|. ++.... .....+++|++|++++|. ++...... ...+++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L  131 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCG-LQELGPGL-FRGLAAL  131 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTT-TTTCTTC
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCc-CCEECHhH-hhCCcCC
Confidence            5677777777651111111112356677777777764 443111 112456667777776642 33211111 1234445


Q ss_pred             hhhcccC-----------------eecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEecc
Q 025444           89 VVLCRNM-----------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLR  151 (252)
Q Consensus        89 ~~L~~~l-----------------~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~  151 (252)
                      +.|.+..                 +.++++++.+......++ ..+++|++|+|++|.++.... ..+..+++|+.|+|+
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLF  209 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECC
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh-cCccccCEEECCCCcccccCH-hHccCcccccEeeCC
Confidence            4443321                 222333333322111112 245666666666666543221 223356677777777


Q ss_pred             CCCCccCChHHHHhcCCCCceecc
Q 025444          152 GCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       152 ~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ++. ++.........+++|+.|..
T Consensus       210 ~n~-l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          210 ANN-LSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             SSC-CSCCCHHHHTTCTTCCEEEC
T ss_pred             CCc-CCcCCHHHcccCcccCEEec
Confidence            653 32222222345666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.79  E-value=6.1e-10  Score=95.47  Aligned_cols=158  Identities=15%  Similarity=0.115  Sum_probs=86.9

Q ss_pred             cCCCccEEEecCC-CCHHHHHHH-HHhCCCCcEEEccCCCCCHH--HHHHHHhc-CCCccEEeccCCCCCCHHHHHHHHh
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLI-AENAGSLQTLRLPRSEMSDS--IVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGK   83 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i-~~~~~~L~~L~L~~~~i~~~--~l~~l~~~-~~~L~~L~Ls~c~~i~~~~l~~l~~   83 (252)
                      ..++|++|+++++ .+......+ ...+++|++|+|++|.++..  .+..+... +++|++|+|++| .++......+ .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~-~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV-R  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC-C
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh-c
Confidence            4678888888885 221111111 24678888888888866542  23332211 378888888885 3432211122 1


Q ss_pred             hCchhhhhcccCeecccCCCCcCcHH-HH-HHH-hcCCCCcEEEecCcccCH--HHHHHHHhcCCCCCEEeccCCCCccC
Q 025444           84 HCKLLVVLCRNMHPLDTADKLSQDDE-AN-AIA-STMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDVKL  158 (252)
Q Consensus        84 ~~~~L~~L~~~l~~l~l~~~~~~~~~-~~-~l~-~~~~~L~~L~L~~~~it~--~~l~~i~~~~~~L~~LdL~~C~~i~~  158 (252)
                      .+++|+.|       +++++...... .. .+. ..+++|++|+|++|.++.  .....+..++++|++|+|+++.-...
T Consensus       171 ~l~~L~~L-------~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          171 VFPALSTL-------DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CCSSCCEE-------ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             cCCCCCEE-------ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            34455444       55555543321 11 221 467888888888888763  22335556778888888888643321


Q ss_pred             ChHHHHhcCCCCceecc
Q 025444          159 DDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       159 ~~~~l~~~~~~L~~L~~  175 (252)
                      ........+++|+.|..
T Consensus       244 ~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CCCSCCCCCTTCCEEEC
T ss_pred             cchhhhhhcCCCCEEEC
Confidence            21111233466666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.78  E-value=1.6e-10  Score=97.08  Aligned_cols=59  Identities=17%  Similarity=0.062  Sum_probs=28.5

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|++|+++++.-..........+++|++|+|++|.++.- ...+...+++|++|+|+++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCC
Confidence            4567777766411110111123456677777766654421 0111244566666666664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.77  E-value=5.2e-09  Score=97.89  Aligned_cols=141  Identities=23%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      .+++|+.|+|+++ ++.- . . ...+++|+.|+|++|.++.  +. .+..+++|+.|+|++|. ++.  +..+ ..+++
T Consensus        63 ~l~~L~~L~Ls~N~l~~~-~-~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~--l~~l-~~l~~  132 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDI-K-P-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNG-ISD--INGL-VHLPQ  132 (605)
T ss_dssp             GCTTCCEEECTTSCCCCC-G-G-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSC-CCC--CGGG-GGCTT
T ss_pred             cCCCCCEEEeeCCCCCCC-h-h-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCC-CCC--Cccc-cCCCc
Confidence            3566777777665 2111 1 1 3466777777777775554  11 22456777777777753 332  1112 23555


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      |+.|       .++++.+..-   .....+++|+.|+|++|.|+....   +..+++|+.|+|++|.....  .. ...+
T Consensus       133 L~~L-------~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l  196 (605)
T 1m9s_A          133 LESL-------YLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGL  196 (605)
T ss_dssp             CSEE-------ECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTC
T ss_pred             cCEE-------ECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccC
Confidence            5555       4444444332   112367888888888887664322   56778888888887643221  22 3456


Q ss_pred             CCCceecc
Q 025444          168 PNLKVLGP  175 (252)
Q Consensus       168 ~~L~~L~~  175 (252)
                      ++|+.|..
T Consensus       197 ~~L~~L~L  204 (605)
T 1m9s_A          197 KNLDVLEL  204 (605)
T ss_dssp             TTCSEEEC
T ss_pred             CCCCEEEc
Confidence            77777643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.75  E-value=2e-10  Score=97.01  Aligned_cols=132  Identities=14%  Similarity=0.069  Sum_probs=73.0

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .++|++|++++. .+. ........+++|++|+|++|.++..... .+..+++|++|+|++|..++......+ ..+++|
T Consensus        31 ~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTC
T ss_pred             CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHh-cCCcCC
Confidence            468999999986 221 1111225789999999999977652222 235689999999999754543221222 346667


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      +.|.+.       ++.+.......+ ..+++|++|++++|.++... ...+..+++|++|+|+++
T Consensus       108 ~~L~l~-------~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          108 HTLHLD-------RCGLQELGPGLF-RGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             CEEECT-------TSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CEEECC-------CCcCCEECHhHh-hCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCC
Confidence            766443       322221111111 24556666666666544211 111234555666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.74  E-value=2.3e-10  Score=103.05  Aligned_cols=58  Identities=17%  Similarity=-0.009  Sum_probs=29.8

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .+++|++|+|++|.++.... ..+.++++|+.|+|+++. ++.........+++|+.|..
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEEC
T ss_pred             CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEc
Confidence            45666666666666443211 123456777777777653 32222222344566666643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=1.4e-09  Score=85.46  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      +.+|+.|+++++.-.. +..+....++|+.|+|++|.++.-   .....+++|+.|++++| .++.-. ..+...+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCC-cccccC-cchhhcCCCCC
Confidence            4567777777651111 223334445777777777766541   22245667777777764 343211 01112345554


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHH--HHHHHhcCCCCCEEeccCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~--l~~i~~~~~~L~~LdL~~C  153 (252)
                      .|       +++++.+..-........+++|++|++++|.++...  -..++..+|+|+.|+++++
T Consensus        92 ~L-------~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           92 EL-------ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EE-------ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EE-------ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            44       233333322111111125566666666666643211  1123445666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.74  E-value=7.4e-10  Score=93.10  Aligned_cols=55  Identities=15%  Similarity=0.180  Sum_probs=26.8

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|+.|.++++.-.. +.. ...+++|+.|+|++|.++.  +. ....+++|++|++++|
T Consensus        41 ~~L~~L~l~~~~i~~-~~~-l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-VQG-IQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGN   95 (272)
T ss_dssp             TTCCEEECTTSCCCC-CTT-GGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTS
T ss_pred             cceeeeeeCCCCccc-ccc-cccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCC
Confidence            456666666541100 111 1245666666666665543  11 2244566666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.74  E-value=1.7e-09  Score=92.74  Aligned_cols=139  Identities=16%  Similarity=0.133  Sum_probs=84.9

Q ss_pred             HcCCCccEEEecCC-CCH--HHHHHHHHh-CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHH-HHHH
Q 025444            8 RSSGSLRKLCVSGL-HND--MMFSLIAEN-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL-EAIG   82 (252)
Q Consensus         8 ~~~~~L~~L~l~~~-~~d--~~l~~i~~~-~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l-~~l~   82 (252)
                      ...++|++|++++. .+.  ..+..+... .++|++|+|++|.++..... ....+++|++|++++|...+..++ ..+.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            34678999999986 221  223333211 37899999999876642211 225688999999998653322222 1221


Q ss_pred             -hhCchhhhhcccCeecccCCCCcCc--HHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           83 -KHCKLLVVLCRNMHPLDTADKLSQD--DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        83 -~~~~~L~~L~~~l~~l~l~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                       ..+++|+.|       +++++.+..  .....+...+++|++|+|++|.++.......+..+++|++|+|++|.
T Consensus       197 ~~~l~~L~~L-------~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          197 PLKFPTLQVL-------ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             TTSCTTCCEE-------ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             hccCCCCCEE-------ECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence             345566555       555665553  22334556788999999999887753311223356888999998874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.73  E-value=2.2e-10  Score=102.83  Aligned_cols=58  Identities=14%  Similarity=0.021  Sum_probs=30.0

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .+++|++|+|++|.|+.... ..+.++++|+.|+|+++. ++.........+++|+.|..
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEEC
T ss_pred             cCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEc
Confidence            45566666666655443211 123356777777777753 32222223345666766653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.72  E-value=1.2e-08  Score=86.64  Aligned_cols=141  Identities=18%  Similarity=0.153  Sum_probs=97.5

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|+++++.-.. +.. ...+++|+.|+|++|.++.-  .. ...+++|+.|++++|. ++.  +.. ...+++|+
T Consensus        45 l~~L~~L~l~~~~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~  115 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLK  115 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCC
T ss_pred             cCcccEEEccCCCccc-Chh-HhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCc-CCC--Chh-hccCCCCC
Confidence            4679999999872111 122 35689999999999977752  22 5789999999999964 543  222 23466666


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  169 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~  169 (252)
                      .|       +++++.+..-  ..+ ..+++|++|++++|.++..   ..+..+++|+.|++++|.-.... .  ...+++
T Consensus       116 ~L-------~L~~n~i~~~--~~l-~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~  179 (291)
T 1h6t_A          116 SL-------SLEHNGISDI--NGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTK  179 (291)
T ss_dssp             EE-------ECTTSCCCCC--GGG-GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCG-G--GTTCTT
T ss_pred             EE-------ECCCCcCCCC--hhh-cCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccch-h--hcCCCc
Confidence            66       4455544432  122 4789999999999997764   34668999999999998433222 2  567888


Q ss_pred             Cceecc
Q 025444          170 LKVLGP  175 (252)
Q Consensus       170 L~~L~~  175 (252)
                      |+.|..
T Consensus       180 L~~L~L  185 (291)
T 1h6t_A          180 LQNLYL  185 (291)
T ss_dssp             CCEEEC
T ss_pred             cCEEEC
Confidence            888864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.72  E-value=2.9e-10  Score=98.40  Aligned_cols=78  Identities=13%  Similarity=0.030  Sum_probs=40.1

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++++.|+++++.-...-..+ ..+++|+.|+|++|.++  .+...+.++++|++|+|++| .++  .+..-...+++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~  153 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-PLR--ALPASIASLNRLR  153 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGGGGGCTTCC
T ss_pred             ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCC-ccc--cCcHHHhcCcCCC
Confidence            467777777775111111112 24667777777777655  22222355677777777765 333  1111123455555


Q ss_pred             hhcc
Q 025444           90 VLCR   93 (252)
Q Consensus        90 ~L~~   93 (252)
                      .|.+
T Consensus       154 ~L~L  157 (328)
T 4fcg_A          154 ELSI  157 (328)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.72  E-value=5.9e-10  Score=95.40  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=26.5

Q ss_pred             CCccEEEecCCC-CHHHHHHHH-HhCCCCcEEEccCCCCCHH----HHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLH-NDMMFSLIA-ENAGSLQTLRLPRSEMSDS----IVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~-~d~~l~~i~-~~~~~L~~L~L~~~~i~~~----~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|++|+++++. +......+. ..+++|++|+|++|.++..    ....+ ..+++|++|+|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQA  155 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCC
Confidence            456666666641 111001111 3455666666666654431    11111 24556666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.72  E-value=1.3e-08  Score=91.90  Aligned_cols=147  Identities=20%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +++|+.|+++++ .+.  +.. ...+++|+.|++++|.++...  . ...+++|+.|++++|. ++...  . ...+++|
T Consensus       220 l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L  289 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKD--IGT-LASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQ-ISNIS--P-LAGLTAL  289 (466)
T ss_dssp             CTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTC
T ss_pred             cCCCCEEECCCCCccc--chh-hhcCCCCCEEECCCCccccch--h-hhcCCCCCEEECCCCc-cCccc--c-ccCCCcc
Confidence            556666666665 111  111 134566666666666444311  1 2445666666666542 22111  1 1234444


Q ss_pred             hhhccc---------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444           89 VVLCRN---------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        89 ~~L~~~---------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      +.|.+.               ++.++++++.+.+...   ...+++|+.|++++|.++..   ..+..+++|+.|++++|
T Consensus       290 ~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHN  363 (466)
T ss_dssp             SEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSS
T ss_pred             CeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCC
Confidence            444321               1223444444443222   23677777777777776543   23446777888888776


Q ss_pred             CCccCChHHHHhcCCCCceecc
Q 025444          154 WDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       154 ~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ...... .  ...+++|+.|..
T Consensus       364 ~l~~~~-~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          364 QISDLT-P--LANLTRITQLGL  382 (466)
T ss_dssp             CCCBCG-G--GTTCTTCCEEEC
T ss_pred             ccCccc-h--hhcCCCCCEEec
Confidence            433222 1  456777777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.72  E-value=5.4e-09  Score=89.38  Aligned_cols=82  Identities=17%  Similarity=0.027  Sum_probs=53.4

Q ss_pred             CCccEEEecCC-CCHHHHHHHHH--hCCCCcEEEccCCCCCHHHHHHHH-hcCCCccEEeccCCCCCCHH----HHHHHH
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAE--NAGSLQTLRLPRSEMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAP----ALEAIG   82 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~--~~~~L~~L~L~~~~i~~~~l~~l~-~~~~~L~~L~Ls~c~~i~~~----~l~~l~   82 (252)
                      .+++.|.+.++ .++..+..+..  ..++|++|+|++|.++......++ ..+++|++|+|++|. ++..    ....+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh
Confidence            45788888886 45555544432  356799999999977653333332 568999999999964 5531    112233


Q ss_pred             hhCchhhhhccc
Q 025444           83 KHCKLLVVLCRN   94 (252)
Q Consensus        83 ~~~~~L~~L~~~   94 (252)
                       .+++|+.|.++
T Consensus       143 -~~~~L~~L~Ls  153 (310)
T 4glp_A          143 -LKPGLKVLSIA  153 (310)
T ss_dssp             -BCSCCCEEEEE
T ss_pred             -hccCCCEEEee
Confidence             57788888553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.71  E-value=2.5e-09  Score=97.61  Aligned_cols=150  Identities=17%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      +++|+.|+++++ .+..... ....+++|+.|+|++|.++. ..+......+++|+.|++++|. ++...-......+++
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKS  400 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTT
T ss_pred             CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCcc
Confidence            455555555554 2221111 11345556666666665553 1233333455666666666542 221000000112233


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcC-CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhc
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN  166 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~  166 (252)
                      |+.|       +++++.++...    ...+ ++|+.|+|++|.|+  .+..-+..+++|++|+|++|.-.+ ........
T Consensus       401 L~~L-------~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~  466 (520)
T 2z7x_B          401 LLSL-------NMSSNILTDTI----FRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKS-VPDGIFDR  466 (520)
T ss_dssp             CCEE-------ECCSSCCCGGG----GGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             CCEE-------ECcCCCCCcch----hhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence            3333       44444443221    1122 57777777777766  233223367777777777763332 22222344


Q ss_pred             CCCCceecc
Q 025444          167 FPNLKVLGP  175 (252)
Q Consensus       167 ~~~L~~L~~  175 (252)
                      +++|+.|..
T Consensus       467 l~~L~~L~l  475 (520)
T 2z7x_B          467 LTSLQKIWL  475 (520)
T ss_dssp             CTTCCEEEC
T ss_pred             CCcccEEEC
Confidence            566666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.71  E-value=6.4e-08  Score=77.56  Aligned_cols=123  Identities=11%  Similarity=0.155  Sum_probs=94.8

Q ss_pred             HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhc---CCCCcEEEe
Q 025444           49 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEM  125 (252)
Q Consensus        49 ~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~---~~~L~~L~L  125 (252)
                      +..+..+....+.|++|+|+++..|++.++.+|++.++.=+    .++.++++++.+.+.++.+|++.   -+.|++|+|
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~----~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK----HIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS----CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC----CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            35688888888999999999866899999999988654323    33667899999999999888854   488999999


Q ss_pred             cCcccCHHHHHHHHhcC---CCCCEEeccCCCC--ccCCh-H---HHHhcCCCCceecc
Q 025444          126 AYHVISTEIVLKILSSC---ALLEFLDLRGCWD--VKLDD-K---FMKGNFPNLKVLGP  175 (252)
Q Consensus       126 ~~~~it~~~l~~i~~~~---~~L~~LdL~~C~~--i~~~~-~---~l~~~~~~L~~L~~  175 (252)
                      ++|.|++.++.++++.+   +.|+.|+|+++..  +...+ .   ...+..+.|+.|..
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l  164 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  164 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence            99999999999888744   5699999997643  32222 1   22455677877765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.70  E-value=3.5e-10  Score=91.12  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=67.9

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|++++..-..........+++|++|+|++|.++.- .......+++|++|+|++| .++... ......+++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCC-cCCccC-HhHhcCccCCC
Confidence            34677777777511111112224567777777777765531 1112245677777777775 343211 01112345555


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      .|.++       ++.+...... ....+++|++|+|++|.++... ...+..+++|++|+|+++.
T Consensus       104 ~L~L~-------~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          104 ELALN-------TNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             EEECC-------SSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred             EEEcC-------CCcCcccCHh-HhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCC
Confidence            55333       3322211111 1135677777777777765321 1224467777777777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.70  E-value=5.7e-09  Score=81.88  Aligned_cols=129  Identities=16%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHH
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  112 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~  112 (252)
                      .+++|+.|++++|.++.  +..+....++|+.|++++| .++.-  ..+ ..+++|+.|       +++++.+..-. ..
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L-------~Ls~N~l~~~~-~~   82 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTL-------LVNNNRICRIG-EG   82 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEE-------ECCSSCCCEEC-SC
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc--ccc-ccCCCCCEE-------ECCCCcccccC-cc
Confidence            46799999999997774  3344444569999999996 46542  112 235556555       55555544321 12


Q ss_pred             HHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444          113 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  175 (252)
Q Consensus       113 l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~  175 (252)
                      +...+++|++|+|++|.|+.......+..+++|+.|+++++.-.....  ..+...+|+|+.|..
T Consensus        83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence            224799999999999998753322245689999999999986543332  224578899999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.69  E-value=7.7e-08  Score=88.12  Aligned_cols=38  Identities=24%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHH--HhcCCCccEEeccCC
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQI--AGRLSAVTFLDLSYC   70 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l--~~~~~~L~~L~Ls~c   70 (252)
                      .+++|+.|+|++|.++.......  ...+++|+.|+|++|
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence            45555555555555554332211  233455555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.69  E-value=1.5e-10  Score=98.64  Aligned_cols=135  Identities=17%  Similarity=0.063  Sum_probs=67.0

Q ss_pred             cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444            9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus         9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      ..++|+.|+++++.-.. +......+++|++|+|++|.++..........+++|+.|++++|. ++..... ....+++|
T Consensus        76 ~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L  152 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSL  152 (306)
T ss_dssp             SCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTC
T ss_pred             cccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCC
Confidence            46788888888862111 111123577888888888855442221223567888888888753 3321111 11235556


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      +.|.+.       ++.+...........+++|++|+|++|.++... ...+..+++|+.|+|++|.
T Consensus       153 ~~L~l~-------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          153 EVLKMA-------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             CEEECT-------TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred             CEEECC-------CCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCc
Confidence            555433       222211101111124556666666666544321 1122345566666666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.69  E-value=4.3e-10  Score=94.56  Aligned_cols=151  Identities=15%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      .+++|+.|+++++ .+.  +. ....+++|++|+|++|.++... ......+++|++|++++|. ++.... .....+++
T Consensus        61 ~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~  134 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTN  134 (272)
T ss_dssp             GCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTT
T ss_pred             cCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCc-CCccCH-HHhccCCC
Confidence            4789999999986 222  22 2347899999999999776421 1223578999999999964 442111 11234666


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      |+.|.+       +++.+..-.. .....+++|++|++++|.++... ...+..+++|+.|++++|.-.... ......+
T Consensus       135 L~~L~L-------~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l  204 (272)
T 3rfs_A          135 LTYLNL-------AHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRL  204 (272)
T ss_dssp             CCEEEC-------CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTC
T ss_pred             CCEEEC-------CCCccCccCH-HHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccC-HHHHhCC
Confidence            766644       3443332111 11236889999999999877321 233457889999999987533222 2233567


Q ss_pred             CCCceecc
Q 025444          168 PNLKVLGP  175 (252)
Q Consensus       168 ~~L~~L~~  175 (252)
                      ++|+.|..
T Consensus       205 ~~L~~L~l  212 (272)
T 3rfs_A          205 TSLQYIWL  212 (272)
T ss_dssp             TTCCEEEC
T ss_pred             cCCCEEEc
Confidence            77777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.69  E-value=4.8e-10  Score=96.97  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=98.1

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH------
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG------   82 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~------   82 (252)
                      .++|+.|+++++ .+ . +......+++|+.|+|++|.++  .+...+..+++|++|+|++|..++.-. ..+.      
T Consensus       103 l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~  177 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELP-EPLASTDASG  177 (328)
T ss_dssp             GTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEEEC-CC
T ss_pred             CCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccC-hhHhhccchh
Confidence            678999999986 33 2 2222357899999999999776  233345779999999999976443210 1111      


Q ss_pred             --hhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh
Q 025444           83 --KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD  160 (252)
Q Consensus        83 --~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~  160 (252)
                        ..+++|+.|.++...+.  .  +.    .. ...+++|++|+|++|.++.  +...+..+++|++|+|++|.......
T Consensus       178 ~~~~l~~L~~L~L~~n~l~--~--lp----~~-l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR--S--LP----AS-IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC--C--CC----GG-GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             hhccCCCCCEEECcCCCcC--c--ch----Hh-hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhH
Confidence              13667777755433221  1  11    11 2478999999999999773  33345689999999999987764333


Q ss_pred             HHHHhcCCCCceecc
Q 025444          161 KFMKGNFPNLKVLGP  175 (252)
Q Consensus       161 ~~l~~~~~~L~~L~~  175 (252)
                      .. ...+++|+.|..
T Consensus       247 ~~-~~~l~~L~~L~L  260 (328)
T 4fcg_A          247 PI-FGGRAPLKRLIL  260 (328)
T ss_dssp             CC-TTCCCCCCEEEC
T ss_pred             HH-hcCCCCCCEEEC
Confidence            32 245777888765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.68  E-value=6.1e-10  Score=92.43  Aligned_cols=152  Identities=14%  Similarity=0.082  Sum_probs=84.3

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      ++|+.|++++..-..........+++|++|+|++|.++... ......+++|++|+|++| .++.... .....+++|+.
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANN-QLASLPL-GVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCC-cccccCh-hHhcccCCCCE
Confidence            56778888775211111112236788888888888665421 112256788888888885 3442111 11134556666


Q ss_pred             hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCC
Q 025444           91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  170 (252)
Q Consensus        91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L  170 (252)
                      |.+       +++.+..-... +...+++|++|+|++|.|+... ...+..+++|+.|+|+++.-.... ......+++|
T Consensus       112 L~L-------~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  181 (251)
T 3m19_A          112 LYL-------GGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKL  181 (251)
T ss_dssp             EEC-------CSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred             EEc-------CCCcCCCcChh-HhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCC
Confidence            544       33333211111 1136788888888888876321 123457788888888886433222 2223556777


Q ss_pred             ceecc
Q 025444          171 KVLGP  175 (252)
Q Consensus       171 ~~L~~  175 (252)
                      +.|..
T Consensus       182 ~~L~l  186 (251)
T 3m19_A          182 QTITL  186 (251)
T ss_dssp             CEEEC
T ss_pred             CEEEe
Confidence            77764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.67  E-value=4.5e-10  Score=89.95  Aligned_cols=147  Identities=18%  Similarity=0.125  Sum_probs=93.1

Q ss_pred             CccEEEecCCCCH-HHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           12 SLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        12 ~L~~L~l~~~~~d-~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      .|+.+.+.+.... ..+......+++|+.|+|++|.++.  +. .+..+++|+.|++++| .++.  +..+...+++|+.
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~   97 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEE   97 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCE
Confidence            3455555543211 1122234578999999999996665  22 3356899999999986 3442  2233344566777


Q ss_pred             hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCC------h---H
Q 025444           91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---K  161 (252)
Q Consensus        91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~------~---~  161 (252)
                      |.++       ++.+..-  ..+ ..+++|++|++++|.++.......+..+++|++|++++|......      .   .
T Consensus        98 L~L~-------~N~l~~l--~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           98 LWIS-------YNQIASL--SGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             EEEE-------EEECCCH--HHH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             EECc-------CCcCCcC--Ccc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence            7544       3333332  233 378999999999999886544345668999999999997532110      1   1


Q ss_pred             HHHhcCCCCceec
Q 025444          162 FMKGNFPNLKVLG  174 (252)
Q Consensus       162 ~l~~~~~~L~~L~  174 (252)
                      .+...+|+|+.|.
T Consensus       168 ~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          168 EVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCSSCSEEC
T ss_pred             HHHHhCCCcEEEC
Confidence            2356788888885

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.67  E-value=6.1e-10  Score=95.69  Aligned_cols=60  Identities=20%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444            8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus         8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ..+++|++|+++++.-..........+++|+.|+|++|.++...  . ...+++|++|++++|
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSS
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCC
Confidence            34567888888876211112223356788888888888665311  1 356777888888775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.66  E-value=6.1e-10  Score=93.43  Aligned_cols=153  Identities=15%  Similarity=0.088  Sum_probs=80.3

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|+++++.-......+...+++|++|+|++|.++.-.. .....+++|++|+++++. ++......+ ..+++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~  136 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQ-LKSLPPRVF-DSLTKLT  136 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCc-cCeeCHHHh-CcCcCCC
Confidence            5677778777752111111222456778888887775553111 122456778888887752 332111111 2455565


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  169 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~  169 (252)
                      .|.+       +++.+......++ ..+++|++|+|++|.++.... ..+.++++|++|+|+++. ++.........+++
T Consensus       137 ~L~L-------s~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          137 YLSL-------GYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEK  206 (270)
T ss_dssp             EEEC-------CSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             EEEC-------CCCcCCccCHhHc-cCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCc-CCcCCHHHhccccC
Confidence            5533       3333222111111 357788888888877654221 123467788888888763 33222222345677


Q ss_pred             Cceecc
Q 025444          170 LKVLGP  175 (252)
Q Consensus       170 L~~L~~  175 (252)
                      |+.|..
T Consensus       207 L~~L~l  212 (270)
T 2o6q_A          207 LKMLQL  212 (270)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=9e-09  Score=86.19  Aligned_cols=139  Identities=15%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .++|+.|+++++ .+.  +.. ...+++|+.|+|++|.++.-.  . ...+++|+.|++++|. ++.  +..+..  ++|
T Consensus        40 l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~--l~~~~~--~~L  108 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS--LAG-MQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKN--LNGIPS--ACL  108 (263)
T ss_dssp             HTTCSEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSC--CTTCCC--SSC
T ss_pred             cCcCcEEECcCCCccc--chH-HhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCC--cCcccc--Ccc
Confidence            578999999886 221  222 346889999999999777522  2 4678999999999863 442  111111  445


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP  168 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~  168 (252)
                      +.|       +++++.+..-.  . ...+++|++|+|++|.++...   .+..+++|+.|++++|.-...   .....++
T Consensus       109 ~~L-------~L~~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~  172 (263)
T 1xeu_A          109 SRL-------FLDNNELRDTD--S-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLK  172 (263)
T ss_dssp             CEE-------ECCSSCCSBSG--G-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCC
T ss_pred             cEE-------EccCCccCCCh--h-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCC
Confidence            444       55565554421  2 247899999999999987642   456899999999999754322   2234567


Q ss_pred             CCceecc
Q 025444          169 NLKVLGP  175 (252)
Q Consensus       169 ~L~~L~~  175 (252)
                      +|+.|..
T Consensus       173 ~L~~L~l  179 (263)
T 1xeu_A          173 KVNWIDL  179 (263)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEeC
Confidence            7777753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.65  E-value=3.1e-08  Score=89.36  Aligned_cols=35  Identities=23%  Similarity=0.176  Sum_probs=17.1

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+++|++|+|++|.++....   +..+++|+.|++++|
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS
T ss_pred             CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC
Confidence            44555555555555433211   335555555555555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.65  E-value=4.7e-10  Score=104.24  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=28.2

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      +++|+.|+++++.-.. +......+++|++|++++|.++.... ..+..+++|++|++++|
T Consensus       277 l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          277 FSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             CTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSC
T ss_pred             ccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCC
Confidence            4566777776641111 11111345666666666665543211 11234555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.65  E-value=5.6e-09  Score=93.50  Aligned_cols=38  Identities=16%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             hCCCCcEEEccCCCCCHHHHHH-HHhcCCCccEEeccCC
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQ-IAGRLSAVTFLDLSYC   70 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~-l~~~~~~L~~L~Ls~c   70 (252)
                      .+++|++|+|++|.++...... ....+++|++|+|++|
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  139 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN  139 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred             CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence            4555666666665555432221 1234566666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.64  E-value=8.2e-10  Score=98.98  Aligned_cols=138  Identities=14%  Similarity=0.013  Sum_probs=84.1

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|++|+++++.-..........+++|++|+|++|.++.......+..+++|++|+|++|. ++......+ ..+++|+
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~  106 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF-NGLANLE  106 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT-TTCTTCC
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc-cCcccCC
Confidence            36788999988621111122234688899999998865421111223568889999998863 443211222 2355555


Q ss_pred             hhcccCeecccCCCCcCcHHHHH-HHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           90 VLCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      .|       +++++.+....... ....+++|++|+|++|.++......++.++++|++|+++++...
T Consensus       107 ~L-------~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          107 VL-------TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             EE-------ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             EE-------eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            55       55566555433322 12468889999999888765433344667888999999887543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.62  E-value=2.5e-10  Score=97.24  Aligned_cols=155  Identities=15%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..++|++|+++++ .+..........+++|+.|++++|.++... ......+++|++|++++| .++...+......+++
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRN  176 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcC
Confidence            3688999999986 211101112346889999999999665321 122356899999999986 3433111222234566


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      |+.|       +++++.+.......+ ..+++|++|+|++|.++..... .+..+++|+.|+|++|.........+ ..+
T Consensus       177 L~~L-------~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~  246 (306)
T 2z66_A          177 LTFL-------DLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQEL-QHF  246 (306)
T ss_dssp             CCEE-------ECTTSCCCEECTTTT-TTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCBCSSSSC-CCC
T ss_pred             CCEE-------ECCCCCcCCcCHHHh-cCCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCcccCHHHH-Hhh
Confidence            6665       455554443322223 3689999999999987643221 24578999999999985443222333 334


Q ss_pred             -CCCceecc
Q 025444          168 -PNLKVLGP  175 (252)
Q Consensus       168 -~~L~~L~~  175 (252)
                       ++|+.|..
T Consensus       247 ~~~L~~L~L  255 (306)
T 2z66_A          247 PSSLAFLNL  255 (306)
T ss_dssp             CTTCCEEEC
T ss_pred             hccCCEEEc
Confidence             47887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.62  E-value=1.9e-08  Score=94.09  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=96.3

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|+++++.-.. +.. ...+++|+.|+|++|.++...  . +..+++|+.|+|++|. ++.  +..+ ..+++|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~~-l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~--l~~l-~~l~~L~  112 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKD--LSSL-KDLKKLK  112 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CTT-GGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCC--CTTS-TTCTTCC
T ss_pred             CCCCCEEECcCCCCCC-ChH-HccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCC--Chhh-ccCCCCC
Confidence            4678899998862111 122 357899999999999776522  2 4789999999999974 443  1222 3456666


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  169 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~  169 (252)
                      .|       +++++.+..-  ..+ ..+++|+.|+|++|.++..   ..+..+++|+.|+|++|...... .  ...+++
T Consensus       113 ~L-------~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~  176 (605)
T 1m9s_A          113 SL-------SLEHNGISDI--NGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTK  176 (605)
T ss_dssp             EE-------ECTTSCCCCC--GGG-GGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTT
T ss_pred             EE-------EecCCCCCCC--ccc-cCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch-h--hccCCC
Confidence            66       4445544432  122 4799999999999998763   45668999999999998543222 2  567888


Q ss_pred             Cceecc
Q 025444          170 LKVLGP  175 (252)
Q Consensus       170 L~~L~~  175 (252)
                      |+.|..
T Consensus       177 L~~L~L  182 (605)
T 1m9s_A          177 LQNLYL  182 (605)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            888854

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.61  E-value=3.4e-09  Score=91.22  Aligned_cols=114  Identities=15%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             hcCCCccEEeccCCCCCCHHHH-HHHHhhCchhhhhccc--------------CeecccCCCCcCcHHHHHHHhcCCCCc
Q 025444           57 GRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLLVVLCRN--------------MHPLDTADKLSQDDEANAIASTMPKLK  121 (252)
Q Consensus        57 ~~~~~L~~L~Ls~c~~i~~~~l-~~l~~~~~~L~~L~~~--------------l~~l~l~~~~~~~~~~~~l~~~~~~L~  121 (252)
                      ..+++|+.|++++|. ++..++ ......+++|+.|.+.              ++.++++++.+.......+ ..+++|+
T Consensus       142 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~  219 (330)
T 1xku_A          142 NGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLA  219 (330)
T ss_dssp             TTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG-TTCTTCC
T ss_pred             cCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence            456666666666642 322111 1112345555555432              2334444444443222222 2567777


Q ss_pred             EEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          122 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       122 ~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      +|+|++|.++.... ..+..+++|++|+|++|.-... ... ...+++|+.|..
T Consensus       220 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l  270 (330)
T 1xku_A          220 KLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKV-PGG-LADHKYIQVVYL  270 (330)
T ss_dssp             EEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSC-CTT-TTTCSSCCEEEC
T ss_pred             EEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccC-Chh-hccCCCcCEEEC
Confidence            77777776554221 1234667777777777633311 122 234566666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.61  E-value=6.2e-10  Score=93.49  Aligned_cols=135  Identities=24%  Similarity=0.107  Sum_probs=81.5

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .++|++|+++++ .+.- .......+++|++|+|++|.++..... ....+++|++|+|++|. ++......+ ..+++|
T Consensus        27 ~~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L  102 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALGAF-SGLSSL  102 (276)
T ss_dssp             CTTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTTT-TTCTTC
T ss_pred             CCCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCc-cCccChhhh-cCCccc
Confidence            357899999886 2211 111224688999999999877642111 22568899999999863 443221222 346667


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      +.|.+.       ++.+.......+ ..+++|++|++++|.++...+...+.++++|++|++++|.-.
T Consensus       103 ~~L~l~-------~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          103 QKLVAV-------ETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CEEECT-------TSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cEEECC-------CCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            666443       332222111112 367888888888888765333444567888888888887433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.60  E-value=6.1e-10  Score=95.62  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=17.5

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      .+++|++|+|++|.++... . .+..+++|++|+|++|.
T Consensus       219 ~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             TTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCc
Confidence            3455555555555543211 0 12345555555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.60  E-value=1.4e-09  Score=104.35  Aligned_cols=158  Identities=18%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             CCCccEEEecCC-CCHHHHH-HHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH--HHhhC
Q 025444           10 SGSLRKLCVSGL-HNDMMFS-LIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA--IGKHC   85 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~-~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~--l~~~~   85 (252)
                      .++|++|+++++ .+..... .-..++++|++|+|++|.++......+..++++|++|++++|. ++......  +...+
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGC  177 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCC
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccC
Confidence            467888888875 2211111 0124677888888887754432222222456777888887753 44322222  13456


Q ss_pred             chhhhhccc---------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEec
Q 025444           86 KLLVVLCRN---------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL  150 (252)
Q Consensus        86 ~~L~~L~~~---------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL  150 (252)
                      ++|+.|.+.               ++.++++++.+..... . ...+++|++|+|++|.++... ...+.++++|++|+|
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L  254 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNI  254 (768)
T ss_dssp             TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEEC
T ss_pred             CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEEC
Confidence            666666432               2333444443322111 1 235677777777777766432 233456777777777


Q ss_pred             cCCCCccCChHHHHhcCCCCceec
Q 025444          151 RGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       151 ~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      ++|.........   .+++|+.|.
T Consensus       255 s~n~l~~~~~~~---~l~~L~~L~  275 (768)
T 3rgz_A          255 SSNQFVGPIPPL---PLKSLQYLS  275 (768)
T ss_dssp             CSSCCEESCCCC---CCTTCCEEE
T ss_pred             CCCcccCccCcc---ccCCCCEEE
Confidence            776433211111   456666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.59  E-value=1.5e-09  Score=98.09  Aligned_cols=37  Identities=22%  Similarity=0.169  Sum_probs=18.5

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+++|++|+|++|.++... ...+.++++|+.|+|+++
T Consensus       150 ~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          150 GLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             TCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESC
T ss_pred             CCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCC
Confidence            4556666666665544321 122334555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.59  E-value=1.5e-09  Score=98.12  Aligned_cols=152  Identities=16%  Similarity=0.017  Sum_probs=94.8

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|++++..-..........+++|++|+|++|.++..... .+..+++|++|+|++| .++.-... ....+++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~  107 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSN-RLKLIPLG-VFTGLSNLT  107 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCSCCTT-SSTTCTTCC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCC-cCCccCcc-cccCCCCCC
Confidence            45789999998621111112234789999999999977652222 2357899999999986 34421111 113466676


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  169 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~  169 (252)
                      .|.       ++++.+.......+ ..+++|++|+|++|.++.... ..+.++++|+.|+|++|.-. .........+++
T Consensus       108 ~L~-------Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~  177 (477)
T 2id5_A          108 KLD-------ISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHG  177 (477)
T ss_dssp             EEE-------CTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTT
T ss_pred             EEE-------CCCCccccCChhHc-cccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCc-ccChhHhcccCC
Confidence            664       44444332222222 478999999999998764322 22457899999999998543 233333456777


Q ss_pred             Cceec
Q 025444          170 LKVLG  174 (252)
Q Consensus       170 L~~L~  174 (252)
                      |+.|.
T Consensus       178 L~~L~  182 (477)
T 2id5_A          178 LIVLR  182 (477)
T ss_dssp             CCEEE
T ss_pred             CcEEe
Confidence            77775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.58  E-value=1.2e-09  Score=92.82  Aligned_cols=57  Identities=23%  Similarity=0.087  Sum_probs=26.3

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|+.|++++..-..........+++|+.|+|++|.++.-.  .. ..+++|+.|+|+++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VD-GTLPVLGTLDLSHN   87 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CC-SCCTTCCEEECCSS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--CC-CCCCcCCEEECCCC
Confidence            45666666654111101111234566666666666554311  01 34556666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.57  E-value=1.5e-09  Score=90.04  Aligned_cols=136  Identities=14%  Similarity=0.059  Sum_probs=87.4

Q ss_pred             cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444            9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus         9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      ..++|++|+++++.-..........+++|+.|+|++|.++... ......+++|++|+|++| .++.-.. .+...+++|
T Consensus        57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L  133 (251)
T 3m19_A           57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKL  133 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred             CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcc
Confidence            3689999999996211112222356899999999999776421 122357899999999996 4552111 112346667


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      +.|.+       +++.+..-...++ ..+++|++|+|++|.++... ...+..+++|+.|+|++++-.
T Consensus       134 ~~L~L-------s~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          134 KELRL-------NTNQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CEEEC-------CSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred             cEEEC-------cCCcCCccCHHHc-CcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCcee
Confidence            66644       4443332111122 37899999999999977422 224568899999999997543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.56  E-value=4.8e-10  Score=103.18  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=17.7

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+++|++|+|++|.+++..+...+..+++|+.|+|++|
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            34555555555555442222223334555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.54  E-value=1.3e-09  Score=99.24  Aligned_cols=57  Identities=19%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      +++|+.|+++++ .+. ........+++|+.|+|++|.++...  . +..+++|++|+|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N   90 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN   90 (487)
T ss_dssp             GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSS
T ss_pred             CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCC
Confidence            458899999886 222 11122246788999999888765311  1 356788888888875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.54  E-value=1e-09  Score=101.92  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             cCCCCcEEEecCcccCHHHHH--HHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVL--KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~--~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      .+++|++|+|++|.++...+.  ..+..+++|+.|+|++|......... ...+++|+.|.
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~  506 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTSLKMMNHVD  506 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEE
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hccccCCCEEE
Confidence            456666666666665432111  12345666666666665332211122 23445555553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.52  E-value=2.2e-09  Score=92.11  Aligned_cols=56  Identities=18%  Similarity=0.188  Sum_probs=27.6

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL   91 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L   91 (252)
                      +++|+.|++++|.++...-. ....+++|+.|++++| .++......+...+++|+.|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEE
Confidence            45666666666655541111 1134566666666664 34433333333344555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=2e-08  Score=80.24  Aligned_cols=126  Identities=18%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..++|+.|+++++ .+.  +. ....+++|+.|+|++|.++.  +......+++|+.|++++| .++.  +..+. .+++
T Consensus        46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~-~l~~  116 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGIE-KLVN  116 (198)
T ss_dssp             HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHH-HHHH
T ss_pred             cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCccc-cCCC
Confidence            4789999999986 222  22 23468899999999997663  3344455789999999996 4554  33333 4566


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHH---------HHHHHHhcCCCCCEEec
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---------IVLKILSSCALLEFLDL  150 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~---------~l~~i~~~~~~L~~LdL  150 (252)
                      |+.|       +++++.+..-........+++|++|++++|.++..         ....++..+|+|+.|+-
T Consensus       117 L~~L-------~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          117 LRVL-------YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             SSEE-------EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             CCEE-------ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            6666       55555555544323334899999999999997544         22345678999999983

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.51  E-value=6.5e-09  Score=91.53  Aligned_cols=16  Identities=19%  Similarity=0.584  Sum_probs=7.6

Q ss_pred             cCCCCcEEEecCcccC
Q 025444          116 TMPKLKRLEMAYHVIS  131 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it  131 (252)
                      .+++|++|+|++|.++
T Consensus       246 ~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELE  261 (390)
T ss_dssp             GCTTCSEEECCSSCCC
T ss_pred             CCCCccEEECCCCcCC
Confidence            3444555555544433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.51  E-value=5.2e-09  Score=87.79  Aligned_cols=114  Identities=19%  Similarity=0.096  Sum_probs=65.5

Q ss_pred             cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444            9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus         9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      ..++|+.|+++++.-..........+++|+.|+|++|.++..... ....+++|++|++++|. ++...... ...+++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L  126 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETN-LASLENFP-IGHLKTL  126 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSC-CCCSTTCC-CTTCTTC
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEECCCCC-ccccCchh-cccCCCC
Confidence            367899999988621111111224678999999999977642211 22568899999998863 33211111 2245666


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  132 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~  132 (252)
                      +.|.+       +++.+....+......+++|++|+|++|.++.
T Consensus       127 ~~L~l-------~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          127 KELNV-------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             CEEEC-------CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CEEEC-------cCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            66643       33333321111112367888888888887553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.50  E-value=1.1e-09  Score=101.78  Aligned_cols=57  Identities=14%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      .+++|++|+|++|.++... ...+.++++|++|+|++|......... ...+++|+.|.
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~  527 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLD  527 (606)
T ss_dssp             TCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEE
T ss_pred             cCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEE
Confidence            5677777777777765321 122346777777777776433221222 24566676664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.50  E-value=3.1e-09  Score=95.25  Aligned_cols=57  Identities=14%  Similarity=0.063  Sum_probs=24.6

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      .+++|++|+|++|.++... ...+.++++|+.|+|+++.-.... ......+++|+.|.
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEIN  261 (440)
T ss_dssp             TCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEE
T ss_pred             CCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEE
Confidence            3445555555555543211 112234555555555554222111 11123455666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.49  E-value=2.5e-09  Score=102.59  Aligned_cols=140  Identities=18%  Similarity=0.138  Sum_probs=77.1

Q ss_pred             HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..+++|++|+++++.-...+.. ...+++|++|+|++|.++..... .+..+++|++|++++|. ++... ..  ..+++
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~--~~l~~  270 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQ-FVGPI-PP--LPLKS  270 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSC-CEESC-CC--CCCTT
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCc-ccCcc-Cc--cccCC
Confidence            3578889999888621111222 34678899999988877753333 33678888888888864 22100 00  03455


Q ss_pred             hhhhccc------------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEe
Q 025444           88 LVVLCRN------------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLD  149 (252)
Q Consensus        88 L~~L~~~------------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~Ld  149 (252)
                      |+.|.+.                  ++.++++++.+.......+ ..+++|++|+|++|.++...-...+.++++|++|+
T Consensus       271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~  349 (768)
T 3rgz_A          271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD  349 (768)
T ss_dssp             CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred             CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence            5555332                  2223333433322111122 35677777777777654222222344677777777


Q ss_pred             ccCCC
Q 025444          150 LRGCW  154 (252)
Q Consensus       150 L~~C~  154 (252)
                      |++|.
T Consensus       350 Ls~n~  354 (768)
T 3rgz_A          350 LSFNE  354 (768)
T ss_dssp             CCSSE
T ss_pred             CcCCc
Confidence            77764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.49  E-value=1.4e-09  Score=94.62  Aligned_cols=16  Identities=25%  Similarity=0.316  Sum_probs=7.6

Q ss_pred             hCCCCcEEEccCCCCC
Q 025444           33 NAGSLQTLRLPRSEMS   48 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~   48 (252)
                      .+++|++|+|++|.++
T Consensus        74 ~l~~L~~L~L~~n~l~   89 (353)
T 2z80_A           74 RCVNLQALVLTSNGIN   89 (353)
T ss_dssp             TCTTCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCccC
Confidence            3445555555544433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.49  E-value=2.5e-08  Score=90.92  Aligned_cols=129  Identities=18%  Similarity=0.217  Sum_probs=83.2

Q ss_pred             HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      ..+++|++|+|++|.++......+ ..+++|+.|++++|. ++. ..+......+++|+.|.+       +++.+.....
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~L-------s~N~l~~~l~  391 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDI-------SQNSVSYDEK  391 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEEC-------CSSCCBCCGG
T ss_pred             hhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEEC-------CCCcCCcccc
Confidence            467899999999998776333222 578999999999864 553 233333346777777744       4444333111


Q ss_pred             HHHHhcCCCCcEEEecCcccCHHHHHHHHhcC-CCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~-~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ......+++|++|++++|.++...    .... ++|+.|+|++|. ++.-...+. .+++|+.|..
T Consensus       392 ~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~-l~~ip~~~~-~l~~L~~L~L  451 (520)
T 2z7x_B          392 KGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNK-IKSIPKQVV-KLEALQELNV  451 (520)
T ss_dssp             GCSCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSC-CCCCCGGGG-GCTTCCEEEC
T ss_pred             cchhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCc-ccccchhhh-cCCCCCEEEC
Confidence            111236789999999999987532    2233 699999999984 432223333 7888888865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.48  E-value=4e-09  Score=94.85  Aligned_cols=57  Identities=14%  Similarity=0.038  Sum_probs=26.9

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      .+++|++|+|++|.++... ...+.++++|+.|+|+++......... ...+++|+.|.
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~  272 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELN  272 (452)
T ss_dssp             TCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEE
T ss_pred             ccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEE
Confidence            3455555555555544321 122335566666666665322111111 24456666664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.47  E-value=3.4e-10  Score=93.17  Aligned_cols=82  Identities=17%  Similarity=0.041  Sum_probs=43.2

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCC-CCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      ++|+.|++++..-..........+++|++|+|++|. ++.-.-. ....+++|++|++++|+.++.-.... ...+++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDA-LKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTS-EECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHH-hCCCCCCC
Confidence            467788887751111111122357788888888874 6531111 12457788888887744454211111 12456666


Q ss_pred             hhccc
Q 025444           90 VLCRN   94 (252)
Q Consensus        90 ~L~~~   94 (252)
                      .|.+.
T Consensus       109 ~L~l~  113 (239)
T 2xwt_C          109 FLGIF  113 (239)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            66543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.47  E-value=2.3e-08  Score=83.65  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..++|+.|+++++ +++-  .. ...+++|+.|+|++|.++.  +..+. . ++|+.|++++| .++.-  .. ...+++
T Consensus        61 ~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~--l~~~~-~-~~L~~L~L~~N-~l~~~--~~-l~~l~~  129 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKN--LNGIP-S-ACLSRLFLDNN-ELRDT--DS-LIHLKN  129 (263)
T ss_dssp             GCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSC--CTTCC-C-SSCCEEECCSS-CCSBS--GG-GTTCTT
T ss_pred             hCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCC--cCccc-c-CcccEEEccCC-ccCCC--hh-hcCccc
Confidence            4689999999997 2221  11 4578999999999997765  22222 2 89999999997 45542  22 234666


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      |+.|       +++++.+.+-.  .+ ..+++|++|+|++|.++..   ..+..+++|+.|+++++.-.
T Consensus       130 L~~L-------~Ls~N~i~~~~--~l-~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          130 LEIL-------SIRNNKLKSIV--ML-GFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCEE-------ECTTSCCCBCG--GG-GGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred             ccEE-------ECCCCcCCCCh--HH-ccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence            6666       55555554432  22 4799999999999998765   44568999999999997533

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.47  E-value=7.3e-09  Score=91.18  Aligned_cols=132  Identities=13%  Similarity=0.095  Sum_probs=71.4

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      ++++.|++++..-...-..+...+++|++|+|++|.++..... ....+++|++|+|++|. ++......+ ..+++|+.
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCCC-CCcCCHHHh-cCCCCCCE
Confidence            6778888877511111222345678888888888866542111 12567888888888753 442211112 34555665


Q ss_pred             hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      |.+       +++.+..-.. .+...+++|++|++++|.++... ...+.++++|+.|+++++.
T Consensus       122 L~L-------~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          122 LVL-------ERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             EEC-------CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSC
T ss_pred             EEC-------CCCccCcCCH-HHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCc
Confidence            543       3333221110 11135677777777777755321 1223466777777777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.47  E-value=9.1e-09  Score=94.98  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ++|+.|+|++|.++  .+..-+.++++|+.|+|+++.-.+.... ....+++|+.|..
T Consensus       450 ~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l  504 (562)
T 3a79_B          450 PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWL  504 (562)
T ss_dssp             TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEEC
T ss_pred             CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEe
Confidence            46666776666655  1222122566677777766533221212 2234555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.44  E-value=9.6e-09  Score=94.16  Aligned_cols=60  Identities=23%  Similarity=0.241  Sum_probs=36.5

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      .+++|++|+++++ .+. ........+++|++|+|++|.++...-.. +..+++|++|++++|
T Consensus        48 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           48 ACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGN  108 (549)
T ss_dssp             SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTC
T ss_pred             cCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCC
Confidence            3577888888876 221 11111235778888888888665422222 256788888888875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.44  E-value=3.1e-09  Score=86.64  Aligned_cols=37  Identities=16%  Similarity=0.104  Sum_probs=16.4

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      .+++|+.|+|++|.|+...- ..+..+++|++|+|+++
T Consensus        54 ~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSS
T ss_pred             CCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCC
Confidence            34555555555554432100 11134455555555553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.44  E-value=3.6e-09  Score=97.32  Aligned_cols=134  Identities=25%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++++.|++++..-..........+++|++|+|++|.++.-.. ....++++|++|++++|. ++......+ ..+++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~  103 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAF-SGLSSLQ  103 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTT-TTCTTCC
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCc-CCccCHhhh-cCccccc
Confidence            3578888888862111111122468888888888886664211 122568888888888853 443211222 2466666


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      +|.+.       ++.+..-....+ ..+++|++|++++|.++...+...+.++++|++|++++|.
T Consensus       104 ~L~L~-------~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          104 KLVAV-------ETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             EEECT-------TSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             ccccc-------ccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            66443       332222111112 3677788888887776542223334567788888887764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.44  E-value=7.2e-09  Score=96.23  Aligned_cols=154  Identities=14%  Similarity=0.044  Sum_probs=96.8

Q ss_pred             cCCCccEEEecCCCCHHHHH-HHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGLHNDMMFS-LIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~~~d~~l~-~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      .+++|+.|+++++.-..... .....+++|+.|++++|.++.... .....+++|++|++++| .++...+......+++
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTN  474 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccCCC
Confidence            46889999999862111111 223478999999999996654221 22357899999999996 3443212222234566


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      |+.|       +++++.+.......+ ..+++|++|+|++|.++... ...+.++++|+.|+|++|. ++..... ...+
T Consensus       475 L~~L-------~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~p~~-~~~l  543 (606)
T 3vq2_A          475 LTFL-------DLSKCQLEQISWGVF-DTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNR-IETSKGI-LQHF  543 (606)
T ss_dssp             CCEE-------ECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSC-CCCEESC-GGGS
T ss_pred             CCEE-------ECCCCcCCccChhhh-cccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCc-CcccCHh-Hhhh
Confidence            6666       555555443322223 37899999999999977532 2334578999999999985 4322222 3445


Q ss_pred             C-CCceecc
Q 025444          168 P-NLKVLGP  175 (252)
Q Consensus       168 ~-~L~~L~~  175 (252)
                      + +|+.|..
T Consensus       544 ~~~L~~l~l  552 (606)
T 3vq2_A          544 PKSLAFFNL  552 (606)
T ss_dssp             CTTCCEEEC
T ss_pred             cccCcEEEc
Confidence            5 5888865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.43  E-value=4.5e-09  Score=97.42  Aligned_cols=133  Identities=25%  Similarity=0.098  Sum_probs=79.6

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      +++++|+|++. ++ .........+++|+.|+|++|.|+.-. ......+++|++|+|++| .++.-.... ...+++|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~~-f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALGA-FSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECGGG-GTTCTTCC
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCC-cCCCCCHHH-hcCCCCCC
Confidence            46888888875 22 111111246788999999888665311 112256888999999886 354311111 23466666


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      +|.+       +++.+..-...++ ..+++|++|+|++|.++...+......+++|+.|+++++.-
T Consensus       128 ~L~L-------s~N~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          128 KLVA-------VETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EEEC-------TTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEEC-------CCCcCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            6644       3333322111112 36788999999988876544444556788899999988743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.41  E-value=7e-09  Score=84.98  Aligned_cols=36  Identities=19%  Similarity=0.193  Sum_probs=18.7

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+++|++|+|++|.|+  .+..-+..+++|+.|+|+++
T Consensus       110 ~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             TCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSS
T ss_pred             cchhhCeEeccCCccc--ccCcccccCCCCCEEECCCC
Confidence            4555666666665554  12222345556666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.41  E-value=1.8e-08  Score=93.91  Aligned_cols=16  Identities=19%  Similarity=0.584  Sum_probs=7.9

Q ss_pred             cCCCCcEEEecCcccC
Q 025444          116 TMPKLKRLEMAYHVIS  131 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it  131 (252)
                      .+++|++|+|++|.++
T Consensus       252 ~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          252 NYPGLVEVDLSYNELE  267 (597)
T ss_dssp             GCTTCSEEECCSSCCC
T ss_pred             cCCCCCEEECCCCccC
Confidence            3455555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=8e-08  Score=93.32  Aligned_cols=135  Identities=13%  Similarity=0.009  Sum_probs=75.3

Q ss_pred             cCCCccEEEecCC-CCHH----------------HHHHH--HHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccC
Q 025444            9 SSGSLRKLCVSGL-HNDM----------------MFSLI--AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY   69 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~----------------~l~~i--~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~   69 (252)
                      ..++|+.|+++++ .+..                .+..-  ...+++|+.|+|++|.+... +...+.++++|+.|+|++
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTT
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcC
Confidence            3578888888876 3331                12221  12678888888888854432 123335788888888888


Q ss_pred             CCCCCH-HHHHHHHh------hCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcC
Q 025444           70 CSKIGA-PALEAIGK------HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC  142 (252)
Q Consensus        70 c~~i~~-~~l~~l~~------~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~  142 (252)
                      |..++. .....++.      .+++|+.|       +++++.+..-........+++|++|+|++|.++  .+. .+..+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L-------~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L  594 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIF-------YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTN  594 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEE-------ECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTT
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEE-------EeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCC
Confidence            654665 22222221      23355555       444444331000012236777777777777766  233 34566


Q ss_pred             CCCCEEeccCCC
Q 025444          143 ALLEFLDLRGCW  154 (252)
Q Consensus       143 ~~L~~LdL~~C~  154 (252)
                      ++|+.|+|++|.
T Consensus       595 ~~L~~L~Ls~N~  606 (876)
T 4ecn_A          595 VKLTDLKLDYNQ  606 (876)
T ss_dssp             SEESEEECCSSC
T ss_pred             CcceEEECcCCc
Confidence            777777777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.38  E-value=1.3e-08  Score=95.92  Aligned_cols=59  Identities=12%  Similarity=0.086  Sum_probs=27.6

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|++|++++..-..........+++|++|+|++|.++...- ....++++|++|+|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCC
Confidence            456666666641101111112345666666666664443111 11234566666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.38  E-value=1.6e-08  Score=95.19  Aligned_cols=136  Identities=16%  Similarity=0.042  Sum_probs=84.2

Q ss_pred             cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444            9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus         9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .+++|++|+++++.-..........+++|+.|+|++|.++.-.- ..+..+++|++|++++|. ++......+ ..+++|
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L  123 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNS-IQKIKNNPF-VKQKNL  123 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCSCTT-TTCTTC
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-hhhccCCCCCEEECCCCc-cCccChhHc-cccCCC
Confidence            46899999999862111122233578999999999997664111 123578999999999963 432111122 346677


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHH-hcCCCCCEEeccCCCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL-SSCALLEFLDLRGCWD  155 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~-~~~~~L~~LdL~~C~~  155 (252)
                      ++|.++       ++.+.......+ ..+++|++|++++|.++......+. ..+++|++|++++|..
T Consensus       124 ~~L~Ls-------~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          124 ITLDLS-------HNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CEEECC-------SSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CEEECC-------CCcccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            776443       333322111112 3688999999999886643333222 2568899999988743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.38  E-value=9.8e-09  Score=93.52  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=31.1

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcc
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   93 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~   93 (252)
                      +++|+.|+|++|.++...-. ....+++|+.|+|++| .++......+...+++|+.|.+
T Consensus       119 l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred             cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence            56677777777765542111 1134667777777764 3544333344444555655533

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.38  E-value=5.7e-09  Score=85.07  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=17.5

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+++|++|+|++|.|+... ...+.++++|+.|+|+++
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBC-TTSSTTCTTCSEEECTTS
T ss_pred             CCcCCCEEECCCCcCCeEC-HhHcCCCccCCEEECCCC
Confidence            4555555555555544211 111224555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.38  E-value=2.5e-08  Score=81.69  Aligned_cols=134  Identities=13%  Similarity=0.044  Sum_probs=85.5

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|+++++.-..........+++|+.|+|++|.|+.-. ......+++|+.|+|++| .++.-. ..+...+++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~  115 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVHLK  115 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCC
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcchhhC
Confidence            478999999986211111222346889999999999765311 122357899999999996 454211 11123466676


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      .|.++       ++.+..- ...+ ..+++|++|+|++|.|+... ...+..+++|+.|+|++++-.
T Consensus       116 ~L~Ls-------~N~l~~l-p~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          116 ELFMC-------CNKLTEL-PRGI-ERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EEECC-------SSCCCSC-CTTG-GGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred             eEecc-------CCccccc-Cccc-ccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCcc
Confidence            66544       3333310 0112 57899999999999977422 134568899999999986533

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.36  E-value=2.5e-08  Score=92.95  Aligned_cols=132  Identities=13%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      .+++.|+++++.-......+...+++|+.|+|++|.++..... .+..+++|+.|+|++|. ++......+ ..+++|+.
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~  127 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTV  127 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCc-CCCCCHHHH-cCCCCCCE
Confidence            5677777777521111223345678888888888866642111 22467788888888753 443111111 34566666


Q ss_pred             hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      |.+       +++.+..-.. .+...+++|++|+|++|.++... ...+.++++|+.|+|++|.
T Consensus       128 L~L-------~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          128 LVL-------ERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             EEC-------CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSC
T ss_pred             EEe-------eCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCC
Confidence            643       3333221110 11135677777777777755321 1123467777777777764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.36  E-value=2.4e-08  Score=80.21  Aligned_cols=129  Identities=14%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      .++|+.|+|+++.++... ......+++|++|+|+++ .++... ......+++|+.|.+       +++.+..-.. ..
T Consensus        27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L-------s~n~l~~~~~-~~   95 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNL-------STNQLQSLPN-GV   95 (208)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEEC-------CSSCCCCCCT-TT
T ss_pred             CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEEC-------CCCcCCccCH-hH
Confidence            568999999999776421 122367899999999996 454211 111234667777644       3433332111 11


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ...+++|++|+|++|.++... ...+..+++|+.|+|+++. ++.........+++|+.|..
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             hcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence            247899999999999977321 2234678999999999974 43222333456788888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.36  E-value=1.1e-08  Score=87.01  Aligned_cols=148  Identities=18%  Similarity=0.156  Sum_probs=84.8

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..++|+.|++++. ++.  +... ..+++|+.|+|++|.++.  +......+++|+.|+++++ .++.-....+ ..+++
T Consensus        53 ~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~  125 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGAL-RGLGE  125 (290)
T ss_dssp             TCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTT-TTCTT
T ss_pred             cCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCC-cCcccCHHHH-cCCCC
Confidence            3578999999886 221  1111 468899999999987663  2233456889999999985 3442111111 34556


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  167 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~  167 (252)
                      |+.|.+       +++.+..-... +...+++|++|+|++|.++.. ...++.++++|+.|+|+++.-.+.. ..+ ...
T Consensus       126 L~~L~L-------~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~ip-~~~-~~~  194 (290)
T 1p9a_G          126 LQELYL-------KGNELKTLPPG-LLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIP-KGF-FGS  194 (290)
T ss_dssp             CCEEEC-------TTSCCCCCCTT-TTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTT
T ss_pred             CCEEEC-------CCCCCCccChh-hcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCCccC-hhh-ccc
Confidence            666644       33333221111 113678888888888887632 1223456788888888886433222 222 123


Q ss_pred             CCCceec
Q 025444          168 PNLKVLG  174 (252)
Q Consensus       168 ~~L~~L~  174 (252)
                      ++|+.|.
T Consensus       195 ~~L~~l~  201 (290)
T 1p9a_G          195 HLLPFAF  201 (290)
T ss_dssp             CCCSEEE
T ss_pred             ccCCeEE
Confidence            4566654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.35  E-value=1.1e-08  Score=88.15  Aligned_cols=57  Identities=21%  Similarity=0.035  Sum_probs=31.6

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .+++|++|+|++|.++.... ..+..+++|+.|+|++|.-... ... ...+++|+.|..
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l  271 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRV-PAG-LPDLKLLQVVYL  271 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBC-CTT-GGGCTTCCEEEC
T ss_pred             CCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeec-Chh-hhcCccCCEEEC
Confidence            56677777777776554211 1234677777777777633211 122 244666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.35  E-value=4.4e-08  Score=84.20  Aligned_cols=138  Identities=12%  Similarity=0.096  Sum_probs=73.8

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHH-HHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIV-AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      ++|++|+++++.-..........+++|+.|++++|.++..++ ......+++|+.|++++|. ++.-.    ....++|+
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~----~~~~~~L~  195 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP----QGLPPSLT  195 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC----SSCCTTCS
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC----ccccccCC
Confidence            345555555531111122233456777777777775553211 1222456667776666642 22100    00012232


Q ss_pred             hhcc-----------------cCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444           90 VLCR-----------------NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  152 (252)
Q Consensus        90 ~L~~-----------------~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~  152 (252)
                      .|.+                 +++.++++++.+.......+ ..+++|++|+|++|.++  .+...+..+++|++|+|++
T Consensus       196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCS
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc-cCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCC
Confidence            2221                 12334555655544332233 37899999999999987  2333356889999999999


Q ss_pred             CCCc
Q 025444          153 CWDV  156 (252)
Q Consensus       153 C~~i  156 (252)
                      |.-.
T Consensus       273 N~i~  276 (330)
T 1xku_A          273 NNIS  276 (330)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            7544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.34  E-value=9.9e-08  Score=88.54  Aligned_cols=123  Identities=21%  Similarity=0.358  Sum_probs=79.2

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      ..|+.|+|++|.++.  +.. +..+++|+.|+|++| .++  .+......+++|+.|       +++++.++.-  ..+ 
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L-------~Ls~N~l~~l--p~l-  504 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVL-------QASDNALENV--DGV-  504 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEE-------ECCSSCCCCC--GGG-
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEE-------ECCCCCCCCC--ccc-
Confidence            368899999987664  333 467889999999885 454  121122345666666       4444443331  122 


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCcee
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVL  173 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L  173 (252)
                      ..+++|++|+|++|.|+.......+.++++|+.|+|+++.-.....  ..+...+|+|+.|
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            4789999999999987754213345688999999999875443322  3455678888887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.33  E-value=6.4e-08  Score=89.81  Aligned_cols=124  Identities=13%  Similarity=0.140  Sum_probs=84.9

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   90 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~   90 (252)
                      ..|+.|+++++.-.. +.. ...+++|+.|+|++|.|+.  +...+..+++|+.|+|++| .++.  +..+ ..+++|+.
T Consensus       441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPRLQE  512 (567)
T ss_dssp             TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSSCCE
T ss_pred             cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCC-CCCC--Cccc-CCCCCCcE
Confidence            469999999962111 223 3578899999999998772  3334578999999999996 4553  2322 34666666


Q ss_pred             hcccCeecccCCCCcCcHH-HHHHHhcCCCCcEEEecCcccCHH--HHHHHHhcCCCCCEEec
Q 025444           91 LCRNMHPLDTADKLSQDDE-ANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDL  150 (252)
Q Consensus        91 L~~~l~~l~l~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~it~~--~l~~i~~~~~~L~~LdL  150 (252)
                      |       +++++.+.... ...+ ..+++|+.|+|++|.++..  ....+...+|+|+.|++
T Consensus       513 L-------~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          513 L-------LLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             E-------ECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             E-------ECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            6       45555444332 2233 3799999999999997653  34456667999999975

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.32  E-value=1.9e-07  Score=87.67  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=21.7

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE   46 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~   46 (252)
                      ++++.|+++++.-...+..-...+++|+.|+|++|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~  116 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG  116 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence            578888888752111111222467888888888773

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=3.2e-08  Score=96.14  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=75.8

Q ss_pred             cCCCccEEEecCCC-CHHHHHHHHHhCCCCcEEEccCCC-CCH----HHHHHHH---hcCCCccEEeccCCCCCCHHHHH
Q 025444            9 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSE-MSD----SIVAQIA---GRLSAVTFLDLSYCSKIGAPALE   79 (252)
Q Consensus         9 ~~~~L~~L~l~~~~-~d~~l~~i~~~~~~L~~L~L~~~~-i~~----~~l~~l~---~~~~~L~~L~Ls~c~~i~~~~l~   79 (252)
                      .+++|+.|+++++. ... +......+++|+.|+|++|. ++.    ..+..+.   ..+++|+.|+|++| .++  .+.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip  564 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFP  564 (876)
T ss_dssp             GCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCC
T ss_pred             cCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccC
Confidence            46889999998862 222 22333578899999999996 876    2233322   34569999999986 354  222


Q ss_pred             H--HHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCC-CCEEeccCCC
Q 025444           80 A--IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCW  154 (252)
Q Consensus        80 ~--l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~-L~~LdL~~C~  154 (252)
                      .  ....+++|+.|.++       ++.+..  +..+ ..+++|++|+|++|.++  .+..-+..+++ |+.|+|++|.
T Consensus       565 ~~~~l~~L~~L~~L~Ls-------~N~l~~--lp~~-~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCV-------HNKVRH--LEAF-GTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             CHHHHTTCTTCCEEECT-------TSCCCB--CCCC-CTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred             ChhhhhcCCCCCEEECC-------CCCccc--chhh-cCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence            2  22356677766443       322220  0011 35666777777766655  23322445566 6666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.31  E-value=5.7e-09  Score=101.10  Aligned_cols=137  Identities=16%  Similarity=0.012  Sum_probs=79.0

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|++|+++++.-..........+++|+.|+|++|.+....-...+.++++|+.|+|++|. ++......+ ..+++|+
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~  100 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAF-QGLFHLF  100 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSS-CSCSSCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHc-cCCcccC
Confidence            46788888888621111111124678899999988832211101222678889999998863 443211222 2466666


Q ss_pred             hhcccCeecccCCCCcCcHHHHH-HHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      .|.+       +++.+.+..... ....+++|++|+|++|.++.......+.++++|++|+|+++..
T Consensus       101 ~L~L-------s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          101 ELRL-------YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CEEC-------TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             EeeC-------cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            6644       333333211111 1136788888888888876543333456788888888888643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.30  E-value=1.6e-08  Score=95.07  Aligned_cols=81  Identities=10%  Similarity=0.047  Sum_probs=50.1

Q ss_pred             cCCCccEEEecCCC-CHHHHHHHHHhCCCCcEEEccCCC-CCHHHHHHHHhc------CCCccEEeccCCCCCCHHHHHH
Q 025444            9 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGR------LSAVTFLDLSYCSKIGAPALEA   80 (252)
Q Consensus         9 ~~~~L~~L~l~~~~-~d~~l~~i~~~~~~L~~L~L~~~~-i~~~~l~~l~~~------~~~L~~L~Ls~c~~i~~~~l~~   80 (252)
                      ..++|+.|+++++. ... +.....++++|+.|+|++|. ++...+..-+..      +++|++|++++| .++  .+..
T Consensus       247 ~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~  322 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPV  322 (636)
T ss_dssp             GCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCC
T ss_pred             ccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCc
Confidence            46789999998862 221 22223468899999999996 876223222223      488999999886 354  2222


Q ss_pred             --HHhhCchhhhhcc
Q 025444           81 --IGKHCKLLVVLCR   93 (252)
Q Consensus        81 --l~~~~~~L~~L~~   93 (252)
                        ....+++|+.|.+
T Consensus       323 ~~~l~~l~~L~~L~L  337 (636)
T 4eco_A          323 ETSLQKMKKLGMLEC  337 (636)
T ss_dssp             HHHHTTCTTCCEEEC
T ss_pred             hhhhccCCCCCEEeC
Confidence              2235666776644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.29  E-value=3.4e-07  Score=82.67  Aligned_cols=119  Identities=16%  Similarity=0.077  Sum_probs=70.1

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +++|+.|+++++ .+.  +.. ...+++|++|+|++|.++.-.    +..+++|++|++++|. ++...   + ..+++|
T Consensus        41 l~~L~~L~Ls~n~l~~--~~~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~---~-~~l~~L  108 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD--MTG-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLD---V-TPLTKL  108 (457)
T ss_dssp             HTTCCEEECCSSCCCC--CTT-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCC---C-TTCTTC
T ss_pred             cCCCCEEEccCCCccc--Chh-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceee---c-CCCCcC
Confidence            578899999886 222  122 246888999999988766521    3568888999988864 54321   2 346666


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      +.|.++       ++.+..-.    ...+++|++|++++|.++...    +..+++|+.|++++|..
T Consensus       109 ~~L~L~-------~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~  160 (457)
T 3bz5_A          109 TYLNCD-------TNKLTKLD----VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKK  160 (457)
T ss_dssp             CEEECC-------SSCCSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSC
T ss_pred             CEEECC-------CCcCCeec----CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCc
Confidence            666443       33222211    135666666666666655421    33555666666655543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.28  E-value=2.7e-08  Score=81.03  Aligned_cols=135  Identities=12%  Similarity=0.016  Sum_probs=84.1

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      ...++.|++++. ++.-....+...+++|+.|+|++|.|+.-.- ..+..+++|++|+|++| .++......+ ..+++|
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L  107 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSN-RLENVQHKMF-KGLESL  107 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCCCCGGGG-TTCSSC
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCC-ccCccCHhHh-cCCcCC
Confidence            346788888885 2211011123578899999999997764211 12356899999999986 3443221112 356677


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      +.|.+       +++.+......++ ..+++|++|+|++|.|+... ...+..+++|+.|+|++++-.
T Consensus       108 ~~L~L-------s~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          108 KTLML-------RSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CEEEC-------TTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred             CEEEC-------CCCcCCeECHhHc-CCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence            76644       4443332211222 37899999999999976532 233457899999999986543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.26  E-value=2.5e-08  Score=87.20  Aligned_cols=132  Identities=19%  Similarity=0.085  Sum_probs=69.3

Q ss_pred             CCccEEEecCC-CCHHHHHHHHH-hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAE-NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~-~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +.++.|++++. ++. ....... .+++|+.|+|++|.|+.-.- .....+++|++|+|++| .++.-.-. ....+++|
T Consensus        39 ~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L  114 (361)
T 2xot_A           39 SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSN-HLHTLDEF-LFSDLQAL  114 (361)
T ss_dssp             TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTC
T ss_pred             CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCC-cCCcCCHH-HhCCCcCC
Confidence            45777777775 221 1111122 57788888888886654211 11246788888888875 34421111 11245555


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH--HhcCCCCCEEeccCCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI--LSSCALLEFLDLRGCW  154 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i--~~~~~~L~~LdL~~C~  154 (252)
                      +.|.       ++++.+..-...++ ..+++|++|+|++|.|+......+  +..+++|+.|+|+++.
T Consensus       115 ~~L~-------L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          115 EVLL-------LYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CEEE-------CCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CEEE-------CCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            5553       33433332211122 367788888888877654211111  1357788888887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.26  E-value=5.5e-08  Score=89.73  Aligned_cols=129  Identities=13%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      ..+++|+.|+|++|.++...... ...+++|+.|++++| .++. ..+......+++|+.|.++       ++.+.....
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~  420 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVS-------LNSLNSHAY  420 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECT-------TSCCBSCCS
T ss_pred             cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECC-------CCcCCCccC
Confidence            46788999999999777532222 256899999999986 4553 1222223456777776444       333322111


Q ss_pred             HHHHhcCCCCcEEEecCcccCHHHHHHHHhcC-CCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~-~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ......+++|++|++++|.++..    +.... ++|+.|+|++| .++.-...+. .+++|+.|..
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L  480 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNV  480 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEEEC
T ss_pred             hhhhcCcccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEEEC
Confidence            11123679999999999998753    23344 69999999998 4432223333 6788888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.24  E-value=3.7e-07  Score=82.41  Aligned_cols=53  Identities=11%  Similarity=0.154  Sum_probs=25.6

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      .++|+.|+++++ .+.-  .  ...+++|+.|+|++|.++.-  .  +..+++|++|++++|
T Consensus        84 l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             CTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTS
T ss_pred             CCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCC
Confidence            455666666654 1111  1  22455666666666544431  1  234555555555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.23  E-value=3e-08  Score=85.42  Aligned_cols=56  Identities=21%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             cccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444           98 LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus        98 l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      ++++++.+......++ ..+++|++|+|++|.++  .+...+..+++|+.|+++++.-.
T Consensus       222 L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          222 LGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCC
Confidence            3445544443222223 47899999999999987  23333568999999999997543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=2.9e-06  Score=71.23  Aligned_cols=31  Identities=23%  Similarity=0.172  Sum_probs=17.0

Q ss_pred             CCcEEEecCcccCH------HHHHHHHhcCCCCCEEe
Q 025444          119 KLKRLEMAYHVIST------EIVLKILSSCALLEFLD  149 (252)
Q Consensus       119 ~L~~L~L~~~~it~------~~l~~i~~~~~~L~~Ld  149 (252)
                      +|++|+|++|.++.      .....++..+|+|+.||
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            56666666666542      22334555666666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.20  E-value=5.7e-08  Score=79.04  Aligned_cols=129  Identities=13%  Similarity=0.073  Sum_probs=80.8

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      .++|+.|+|++|.|+.-.- .....+++|+.|+|+++ .++......+ ..+++|+.|.+       +++.+..-.. .+
T Consensus        31 ~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~L-------s~N~l~~l~~-~~   99 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVL-------YGNKITELPK-SL   99 (220)
T ss_dssp             CTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEEC-------CSSCCCCCCT-TT
T ss_pred             CcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEEC-------CCCcCCccCH-hH
Confidence            3689999999997764211 12356899999999996 4543211222 34566766644       4433331111 11


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ...+++|++|+|++|.|+.... ..+..+++|+.|+|+++.-.+.... ....+++|+.|..
T Consensus       100 f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L  159 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHL  159 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEEC
T ss_pred             ccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEe
Confidence            2468999999999999765322 2345789999999999754433322 2345777887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.17  E-value=3.7e-08  Score=95.37  Aligned_cols=132  Identities=16%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHH
Q 025444           33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  112 (252)
Q Consensus        33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~  112 (252)
                      ..++|++|+|++|.|+...... ...+++|+.|+|++|..++.-...++ ..+++|+.|.       ++++.+......+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~-------Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILD-------LGSSKIYFLHPDA   92 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEE-------CTTCCCCEECTTS
T ss_pred             CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEE-------CCCCcCcccCHhH
Confidence            4578999999999776422112 26789999999999854432111222 3567777774       4444443322222


Q ss_pred             HHhcCCCCcEEEecCcccCHHHHH-HHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          113 IASTMPKLKRLEMAYHVISTEIVL-KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       113 l~~~~~~L~~L~L~~~~it~~~l~-~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      + ..+++|++|+|++|.++...+. ..+.++++|++|+|++|...+.........+++|+.|.
T Consensus        93 ~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           93 F-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID  154 (844)
T ss_dssp             S-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred             c-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence            3 3789999999999998753222 12458999999999998654333222345678888875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.16  E-value=9.7e-09  Score=88.06  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             CCccEEEecCC-CCH--HHHHHHHHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGL-HND--MMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d--~~l~~i~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      +++++|+++++ .+.  . +......+++|++|+|++ +.++... ...+.++++|++|+|++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n  111 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEE
T ss_pred             ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCC
Confidence            46777777765 221  1 112223566777777764 4333211 111245667777777664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.16  E-value=1.1e-07  Score=88.11  Aligned_cols=129  Identities=18%  Similarity=0.052  Sum_probs=82.1

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      +++++|+|++|.|+.-.- ....++++|++|+|++| .|+.-.-.++ ..+++|++|       +++++.+..-...++ 
T Consensus        52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~~L~~L-------~Ls~N~l~~l~~~~f-  120 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTL-------ILTGNPIQSLALGAF-  120 (635)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEE-------ECTTCCCCEECGGGG-
T ss_pred             cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCC-cCCCcChhHh-cCCCCCCEE-------EccCCcCCCCCHHHh-
Confidence            389999999997764111 12267899999999997 3542111112 346667666       444544432221222 


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .++++|++|+|++|.++... ...+.++++|++|+|+++.-...........+++|+.|..
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            47999999999999976421 1124689999999999975432222233456788888753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.09  E-value=2.5e-08  Score=81.87  Aligned_cols=155  Identities=12%  Similarity=0.037  Sum_probs=84.9

Q ss_pred             cCCCccEEEecCCC-CHHHHHHHHHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444            9 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK   86 (252)
Q Consensus         9 ~~~~L~~L~l~~~~-~d~~l~~i~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~   86 (252)
                      .+++|+.|+++++. -..........+++|++|+|++ +.++.-.. .....+++|+.|++++|. ++.  +.. ...++
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~-l~~--lp~-~~~l~  127 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTG-LKM--FPD-LTKVY  127 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEEC-CCS--CCC-CTTCC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCC-Ccc--ccc-ccccc
Confidence            46889999998862 2111111224688999999998 66663111 122568899999999863 432  111 22345


Q ss_pred             hhhhhcccCeecccCCC-CcCcHHHHHHHhcCCCCc-EEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH
Q 025444           87 LLVVLCRNMHPLDTADK-LSQDDEANAIASTMPKLK-RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  164 (252)
Q Consensus        87 ~L~~L~~~l~~l~l~~~-~~~~~~~~~l~~~~~~L~-~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~  164 (252)
                      +|+.|    ..++++++ .+..-...++ ..+++|+ +|++++|.++... ...... ++|+.|+|++|..++.......
T Consensus       128 ~L~~L----~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~  200 (239)
T 2xwt_C          128 STDIF----FILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAF  200 (239)
T ss_dssp             BCCSE----EEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTT
T ss_pred             ccccc----cEEECCCCcchhhcCcccc-cchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHh
Confidence            55411    23344443 2222111112 3677888 8888888765211 112223 6788888888754532222223


Q ss_pred             hcC-CCCceecc
Q 025444          165 GNF-PNLKVLGP  175 (252)
Q Consensus       165 ~~~-~~L~~L~~  175 (252)
                      ..+ ++|+.|..
T Consensus       201 ~~l~~~L~~L~l  212 (239)
T 2xwt_C          201 GGVYSGPSLLDV  212 (239)
T ss_dssp             TTCSBCCSEEEC
T ss_pred             hccccCCcEEEC
Confidence            445 66777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.08  E-value=2.3e-07  Score=74.00  Aligned_cols=108  Identities=15%  Similarity=0.120  Sum_probs=65.0

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      .++|++|+|++|.|+.  +...+..+++|+.|+|+++ .++.-....+ ..+++|+.|.+       +++.+..-...++
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~L-------s~N~l~~i~~~~f   98 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLIL-------SYNRLRCIPPRTF   98 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEEC-------CSSCCCBCCTTTT
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEEC-------CCCccCEeCHHHh
Confidence            3589999999987763  2234467899999999985 3542111112 23555555533       3333332211122


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                       ..+++|++|+|++|.|+... ...+..+++|+.|+|++.+
T Consensus        99 -~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           99 -DGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             -TTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred             -CCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCC
Confidence             36788888888888876321 1234567888888888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.06  E-value=1.5e-07  Score=82.24  Aligned_cols=130  Identities=18%  Similarity=0.101  Sum_probs=80.3

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      .++++.|+|++|.|+.-....+...+++|+.|+|++| .++.-....+ ..+++|+.|.+       +++.+..-....+
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~L-------s~N~l~~~~~~~~  108 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDL-------SSNHLHTLDEFLF  108 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEEC-------CSSCCCEECTTTT
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEEC-------CCCcCCcCCHHHh
Confidence            3569999999998775222222227899999999996 4553221122 34666766644       4443332111112


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH--hcCCCCceec
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLG  174 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~--~~~~~L~~L~  174 (252)
                       ..+++|++|+|++|.|+... ...+.++++|+.|+|+++.-.......+.  ..+++|+.|.
T Consensus       109 -~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~  169 (361)
T 2xot_A          109 -SDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD  169 (361)
T ss_dssp             -TTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred             -CCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence             47899999999999976432 22345789999999999754433333221  3567777774

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.00  E-value=2.5e-07  Score=72.35  Aligned_cols=111  Identities=16%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      .++|++|+|++|.++.. .......+++|++|+++++ .++.-.. .....+++|+.|.+       +++.+...... .
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l-------~~N~l~~~~~~-~   95 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYL-------HENKLQSLPNG-V   95 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEEC-------CSSCCCCCCTT-T
T ss_pred             CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEEC-------CCCCccccCHH-H
Confidence            46899999998866631 1112356789999999885 4542111 11124555655544       33332211111 1


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      ...+++|++|+|++|.++.. ...++..+++|++|+|+++.-.
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCee
Confidence            13678888888888887632 1233456888888888886433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.98  E-value=1.1e-07  Score=75.62  Aligned_cols=110  Identities=16%  Similarity=0.098  Sum_probs=67.3

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      ++|++|+|++|.++......++..+++|++|+|+++ .++......+ ..+++|+.|.+       +++.+......++ 
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L-------s~N~l~~~~~~~~-   98 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQL-------GENKIKEISNKMF-   98 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEEC-------CSCCCCEECSSSS-
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEEC-------CCCcCCccCHHHh-
Confidence            489999999987654221122367889999999985 4543211122 23555666644       3333332211112 


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      ..+++|++|+|++|.|+... ...+..+++|++|+|+++.-
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred             cCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCc
Confidence            36899999999999876432 22345788999999988643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.91  E-value=3.4e-06  Score=79.05  Aligned_cols=53  Identities=9%  Similarity=-0.073  Sum_probs=29.4

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      ..+++|+.|+|++|.|+.  +.   ..+++|+.|+|++|. ++.-... ...+++|+.|.
T Consensus       238 ~~l~~L~~L~Ls~N~L~~--lp---~~~~~L~~L~Ls~N~-L~~lp~~-l~~l~~L~~L~  290 (622)
T 3g06_A          238 VLPSELKELMVSGNRLTS--LP---MLPSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVN  290 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CCSCCGG-GGGSCTTCEEE
T ss_pred             CCCCcCcEEECCCCCCCc--CC---cccccCcEEeCCCCC-CCcCCHH-HhhccccCEEE
Confidence            345667777777776552  11   155677777777763 3222222 24566666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.86  E-value=2.9e-06  Score=79.52  Aligned_cols=39  Identities=13%  Similarity=-0.021  Sum_probs=32.1

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      .+++|++|+|++|.|+  .+...+.++++|+.|+|+++.-.
T Consensus       259 ~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCC
Confidence            6789999999999988  34444678999999999998644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.79  E-value=9.8e-07  Score=68.85  Aligned_cols=111  Identities=13%  Similarity=0.099  Sum_probs=68.7

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|++|++++..-..........+++|++|+|++|.++.-. ......+++|+.|+++++ .++.... .....+++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCC-CccccCH-HHhhCCcccC
Confidence            468999999986211111222356899999999999776311 122357899999999996 4552111 1123456676


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it  131 (252)
                      .|.+       +++.+..-.. .+...+++|++|+|++|.++
T Consensus       104 ~L~l-------~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          104 ELAL-------DTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EEEC-------CSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred             EEEC-------cCCcceEeCH-HHhcCCcccCEEEecCCCee
Confidence            6644       3433331111 12246899999999999965

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=2.6e-06  Score=73.18  Aligned_cols=90  Identities=16%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             CHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCC-EEeccC
Q 025444           74 GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE-FLDLRG  152 (252)
Q Consensus        74 ~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~-~LdL~~  152 (252)
                      .......+...|++|+.|.+..       +.+..-...++ .+|++|++|.|..+ ++..+ .....+|++|+ .|.+..
T Consensus       214 ~~~~~~~l~~~~~~L~~l~L~~-------n~i~~I~~~aF-~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          214 DNADFKLIRDYMPNLVSLDISK-------TNATTIPDFTF-AQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CHHHHHHHHHHCTTCCEEECTT-------BCCCEECTTTT-TTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT
T ss_pred             cHHHHHHHHHhcCCCeEEECCC-------CCcceecHhhh-hCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc
Confidence            3444555555688887775442       22221111122 36788888888776 32211 11234788888 888876


Q ss_pred             CCCccCChHHHHhcCCCCceecc
Q 025444          153 CWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       153 C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                        .++.-+...+..|++|+.+..
T Consensus       284 --~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          284 --SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             --TCCEECTTTTTTCTTEEEEEE
T ss_pred             --cceEEchhhhhCCccCCEEEe
Confidence              443333333466777777753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.75  E-value=4.2e-06  Score=79.81  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=64.2

Q ss_pred             HHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           31 AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        31 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      ...+++|+.|+|++|.++.  +..-+..+++|++|+|++| .++. .-..+ ..+++|+.|       +++++.+.. ..
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~-lp~~~-~~l~~L~~L-------~Ls~N~l~~-lp  286 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLTE-LPAEI-KNLSNLRVL-------DLSHNRLTS-LP  286 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCSC-CCGGG-GGGTTCCEE-------ECTTSCCSS-CC
T ss_pred             hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCcc-cChhh-hCCCCCCEE-------eCcCCcCCc-cC
Confidence            3456788888888886552  2111236788888888885 4541 11112 335555555       444443331 01


Q ss_pred             HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      ..+ ..+++|++|+|++|.|+  .+..-+..+++|+.|+|+++...
T Consensus       287 ~~~-~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          287 AEL-GSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SSG-GGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             hhh-cCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccC
Confidence            112 36788888888888876  23323567888888988887533

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.74  E-value=7.3e-07  Score=70.83  Aligned_cols=111  Identities=14%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      ..+|+.|++++. ++.-....+...+++|++|+|++|.|+... ...+..+++|++|+|+++ .++......+ ..+++|
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L  104 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGEN-KIKEISNKMF-LGLHQL  104 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSC-CCCEECSSSS-TTCTTC
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCC-cCCccCHHHh-cCCCCC
Confidence            348999999886 221100112357899999999999776421 122357899999999996 4553221112 235666


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it  131 (252)
                      +.|       +++++.+.......+ ..+++|++|+|++|.++
T Consensus       105 ~~L-------~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          105 KTL-------NLYDNQISCVMPGSF-EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEE-------ECCSSCCCEECTTSS-TTCTTCCEEECTTCCBC
T ss_pred             CEE-------ECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCcc
Confidence            666       444444433211122 36899999999999965

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.68  E-value=1.8e-06  Score=82.42  Aligned_cols=109  Identities=18%  Similarity=0.105  Sum_probs=57.7

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .++|+.|+|+++.-...-..+. .+++|+.|+|++|.|+  .+..-+..+++|+.|+|++|. ++  .+..-...+++|+
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~  296 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQLK  296 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTTCS
T ss_pred             CCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCCCC
Confidence            4677778877751111111112 5777888888887666  222223567788888888753 44  1111112345555


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHH
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE  133 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~  133 (252)
                      .|.+       +++.+..- ...+ ..+++|++|+|++|.++..
T Consensus       297 ~L~L-------~~N~l~~l-p~~~-~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          297 YFYF-------FDNMVTTL-PWEF-GNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             EEEC-------CSSCCCCC-CSST-TSCTTCCCEECTTSCCCSH
T ss_pred             EEEC-------CCCCCCcc-Chhh-hcCCCccEEeCCCCccCCC
Confidence            5533       33322210 0012 3677788888888876643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.65  E-value=2.6e-06  Score=67.71  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .++|++|++++. ++ . +......+++|+.|+|++|.|+.-.- .....+++|++|+|+++ .++.-....+ ..+++|
T Consensus        30 ~~~l~~L~L~~n~i~-~-ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~L  104 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-L-VPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYN-RLRCIPPRTF-DGLKSL  104 (193)
T ss_dssp             CTTCCEEECCSSCCC-S-CCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTT-TTCTTC
T ss_pred             CCCCCEEECCCCcCc-h-hHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCC-ccCEeCHHHh-CCCCCC
Confidence            468999999986 22 1 21233578999999999997764211 12257899999999996 4543221122 245667


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCccc
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI  130 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~i  130 (252)
                      +.|.+       +++.+..-...++ ..+++|++|+|++|.+
T Consensus       105 ~~L~L-------~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          105 RLLSL-------HGNDISVVPEGAF-NDLSALSHLAIGANPL  138 (193)
T ss_dssp             CEEEC-------CSSCCCBCCTTTT-TTCTTCCEEECCSSCE
T ss_pred             CEEEC-------CCCCCCeeChhhh-hcCccccEEEeCCCCe
Confidence            66644       3433332111112 3689999999999984

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.61  E-value=6.8e-06  Score=76.21  Aligned_cols=14  Identities=14%  Similarity=0.423  Sum_probs=6.9

Q ss_pred             CCCcEEEecCcccC
Q 025444          118 PKLKRLEMAYHVIS  131 (252)
Q Consensus       118 ~~L~~L~L~~~~it  131 (252)
                      ++|+.|+|++|.|+
T Consensus       180 ~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          180 ESLEALDVSTNLLE  193 (571)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCC
Confidence            44555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.61  E-value=7.7e-06  Score=73.65  Aligned_cols=16  Identities=13%  Similarity=0.250  Sum_probs=8.0

Q ss_pred             cCCCCcEEEecCcccC
Q 025444          116 TMPKLKRLEMAYHVIS  131 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it  131 (252)
                      .+++|++|++++|.++
T Consensus       193 ~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLK  208 (454)
T ss_dssp             TCTTCCEEECCSSCCS
T ss_pred             CCCCCCEEECCCCcCC
Confidence            4455555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.53  E-value=1.1e-05  Score=74.77  Aligned_cols=38  Identities=8%  Similarity=-0.213  Sum_probs=27.5

Q ss_pred             CCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444          117 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  156 (252)
Q Consensus       117 ~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i  156 (252)
                      .+.|+.|+|++|.|+.  +..-+..+++|+.|+|+++.-.
T Consensus       206 ~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          206 EETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             --CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCC
T ss_pred             cccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCC
Confidence            3445999999999873  3333345999999999997544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=1.5e-05  Score=68.42  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=62.7

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      ..+++.+.+.+. +....+..+...|++|+.|+|+++ .++.-.-.++ ..|++|+.|.+...        +..-+..++
T Consensus       201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--------i~~I~~~aF  269 (329)
T 3sb4_A          201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--------LKTIGQRVF  269 (329)
T ss_dssp             GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--------CCEECTTTT
T ss_pred             ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--------cceehHHHh
Confidence            345556655543 444455555555666777766653 1221111111 34556665544221        111001111


Q ss_pred             HhcCCCCc-EEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          114 ASTMPKLK-RLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       114 ~~~~~~L~-~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                       .+|++|+ .|.+...-  |...    ...+|++|+.|++++. .++.-+......|++|+.+.
T Consensus       270 -~~~~~L~~~l~l~~~l~~I~~~----aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          270 -SNCGRLAGTLELPASVTAIEFG----AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -TTCTTCCEEEEECTTCCEECTT----TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             -hCChhccEEEEEcccceEEchh----hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence             3678888 88887632  3322    2347888888888663 34323333346677777663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.34  E-value=6.8e-05  Score=67.43  Aligned_cols=53  Identities=11%  Similarity=0.037  Sum_probs=28.8

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|+.|+++++.-.. +.. ...+++|+.|++++|.++.  +   ....++|+.|++++|
T Consensus       215 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          215 LSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT--L---PDLPPSLEALNVRDN  267 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS--C---CSCCTTCCEEECCSS
T ss_pred             CcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc--c---cccccccCEEECCCC
Confidence            467777777751111 111 2356777777777775543  1   112356666666664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.06  E-value=5.1e-05  Score=58.86  Aligned_cols=38  Identities=11%  Similarity=0.045  Sum_probs=25.7

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      .+++|++|+|++|.|+... ...+..+++|+.|+|++.+
T Consensus        76 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence            6778888888888866321 1234567888888888754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.03  E-value=1.7e-06  Score=75.00  Aligned_cols=36  Identities=11%  Similarity=0.132  Sum_probs=21.0

Q ss_pred             CCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          118 PKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       118 ~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      ++|++|.++++. ++... ..++.++++|+.|+|+++.
T Consensus       177 ~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             EEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC
T ss_pred             cchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCC
Confidence            456666665433 43211 1224567889999998864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.95  E-value=6.6e-05  Score=58.49  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=49.5

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      ++|+.|+|++|.|+.-. ...+..+++|+.|+|+++ .++.         .+.                        .+.
T Consensus        33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~---------i~~------------------------~~~   77 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSN-KLTA---------IPT------------------------GVF   77 (174)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCC---------CCT------------------------TTT
T ss_pred             CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCC-CCCc---------cCh------------------------hHh
Confidence            56777777777554311 112245677777777774 3321         000                        001


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      ..+++|++|+|++|.|+.. ....+..+++|+.|+|++++
T Consensus        78 ~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred             CCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCCC
Confidence            3678888888888887632 11234578888888888864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.86  E-value=0.001  Score=55.60  Aligned_cols=91  Identities=22%  Similarity=0.295  Sum_probs=60.3

Q ss_pred             HHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCC
Q 025444           25 MMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADK  103 (252)
Q Consensus        25 ~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~  103 (252)
                      ..+..+...+++|++|+|++|.|+. .++..++..+++|+.|+|+++ .++..  ..+    ..|+.+  +++.+.+.++
T Consensus       160 ~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~--~~l----~~l~~l--~L~~L~L~~N  230 (267)
T 3rw6_A          160 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE--REL----DKIKGL--KLEELWLDGN  230 (267)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG--GGG----GGGTTS--CCSEEECTTS
T ss_pred             HHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc--hhh----hhcccC--CcceEEccCC
Confidence            3455566789999999999998876 345556678999999999995 45532  111    223322  3455566666


Q ss_pred             CcCc----H-H-HHHHHhcCCCCcEEE
Q 025444          104 LSQD----D-E-ANAIASTMPKLKRLE  124 (252)
Q Consensus       104 ~~~~----~-~-~~~l~~~~~~L~~L~  124 (252)
                      .+..    . . ...+...+|+|+.|+
T Consensus       231 pl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          231 SLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCccccCcchhHHHHHHHHCcccCeEC
Confidence            6543    1 2 235566899999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.73  E-value=0.00011  Score=57.28  Aligned_cols=59  Identities=15%  Similarity=0.104  Sum_probs=41.7

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ..+++|++|+|++|.|+... ..++.++++|+.|+|+++. ++.........+++|+.|..
T Consensus        54 ~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           54 DHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEEC
T ss_pred             cCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEe
Confidence            36899999999999977421 2234678999999999974 43222333456788888865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.69  E-value=0.00014  Score=64.46  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=32.1

Q ss_pred             cCCCCcEEEecCcccCHHHH----HHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          116 TMPKLKRLEMAYHVISTEIV----LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l----~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .|++|+.+.+.++.++...+    .....+|++|+.+.|..  .++.-+......|++|+.+..
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence            67788888877665331100    12234777777777764  243233333456666776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.44  E-value=0.00018  Score=61.86  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             HHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHH
Q 025444           31 AENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE  109 (252)
Q Consensus        31 ~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~  109 (252)
                      ...+++|+.|+|++ |.|+.-.- ..+..+++|+.|+|+++ .++...-..+ ..+++|+.|.++.+.+       ..-.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l-------~~~~   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFNAL-------ESLS   96 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSSCC-------SCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCCcc-------ceeC
Confidence            34567899999986 76654111 12356889999999985 4543211112 3455666664433322       1100


Q ss_pred             HHHHHhcCCCCcEEEecCcccC
Q 025444          110 ANAIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus       110 ~~~l~~~~~~L~~L~L~~~~it  131 (252)
                       ..+...++ |+.|+|++|.++
T Consensus        97 -~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           97 -WKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -STTTCSCC-CCEEECCSSCCC
T ss_pred             -HHHcccCC-ceEEEeeCCCcc
Confidence             00111223 777777777744

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.35  E-value=0.00063  Score=60.16  Aligned_cols=51  Identities=12%  Similarity=0.218  Sum_probs=26.6

Q ss_pred             CCCccEEEecCCCC---HHHHHHHHHhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccC
Q 025444           10 SGSLRKLCVSGLHN---DMMFSLIAENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSY   69 (252)
Q Consensus        10 ~~~L~~L~l~~~~~---d~~l~~i~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~   69 (252)
                      |.+|+.+.+....+   ..    ....|++|+.|.|+.+  .|....+.    . .+|+.+.|..
T Consensus       202 ~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~l~~I~~~aF~----~-~~L~~i~lp~  257 (401)
T 4fdw_A          202 YAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPENVSTIGQEAFR----E-SGITTVKLPN  257 (401)
T ss_dssp             TCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTTCCEECTTTTT----T-CCCSEEEEET
T ss_pred             ecccCEEEeCCchheehhh----HhhCCCCCCEEecCCCccCccccccc----c-CCccEEEeCC
Confidence            56777777765321   22    1235677777777664  33332221    1 4566666643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.04  E-value=0.0011  Score=51.05  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ..+++|++|+|++|.|+.. ...++.++++|++|+|+++. ++.........+++|+.|..
T Consensus        51 ~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           51 DRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             cCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEe
Confidence            3688999999999997732 12334689999999999974 43222333456788888865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.51  E-value=0.00012  Score=63.36  Aligned_cols=55  Identities=13%  Similarity=-0.010  Sum_probs=36.7

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ..+++|++|+|++|+|+.-.    ...+.+|++|.+.+|.+++.-..  ...+++|+.+..
T Consensus       199 ~~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l  253 (350)
T 4ay9_X          199 HGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYNLKKLPT--LEKLVALMEASL  253 (350)
T ss_dssp             TTEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEEC
T ss_pred             ccCcccchhhcCCCCcCccC----hhhhccchHhhhccCCCcCcCCC--chhCcChhhCcC
Confidence            47899999999999977321    13577888888888877642221  234556666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.01  E-value=0.002  Score=55.23  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+++|++|+|++|.|+... ..++..++ |+.|+|.++
T Consensus        78 ~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSS
T ss_pred             CCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCC
Confidence            5666667777666654211 11222222 666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.37  E-value=0.019  Score=50.14  Aligned_cols=119  Identities=16%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             HhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCC-CCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcH
Q 025444           32 ENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD  108 (252)
Q Consensus        32 ~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c-~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~  108 (252)
                      ..|++|+.+.++..  .|....+    ..|++|+.+.+... ..|...   + -..|++|+.+.+.-..-.++.      
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~i~~I~~~---a-F~~c~~L~~i~lp~~v~~I~~------  327 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSRITELPES---V-FAGCISLKSIDIPEGITQILD------  327 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTT---T-TTTCTTCCEEECCTTCCEECT------
T ss_pred             eecccccEEecccccceecCccc----ccccccccccCCCcccccCce---e-ecCCCCcCEEEeCCcccEehH------
Confidence            46778888888765  3433322    46788888888642 112211   1 235777777654311101111      


Q ss_pred             HHHHHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          109 EANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       109 ~~~~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                        .++ .+|.+|+++.|..+-  |...+    ..+|++|+.+++.+....    ......|..|+.+..
T Consensus       328 --~aF-~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          328 --DAF-AGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPV  385 (394)
T ss_dssp             --TTT-TTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSCHHH----HHTCBCCCCC-----
T ss_pred             --hHh-hCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCceee----hhhhhccCCCCEEEe
Confidence              111 368888888886542  43322    357888888888763211    111244666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.85  E-value=0.03  Score=48.86  Aligned_cols=118  Identities=12%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             CCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCC-CCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444           35 GSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  111 (252)
Q Consensus        35 ~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c-~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~  111 (252)
                      ..+..+.++..  .+....+    ..|++|+.+.+... ..+..    .....|+.|+.+.+.-....++.        .
T Consensus       242 ~~~~~~~ip~~v~~i~~~aF----~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~--------~  305 (394)
T 4gt6_A          242 REDPAFKIPNGVARIETHAF----DSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPE--------S  305 (394)
T ss_dssp             CCCSEEECCTTEEEECTTTT----TTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECT--------T
T ss_pred             cccceEEcCCcceEccccee----eecccccEEecccccceecC----cccccccccccccCCCcccccCc--------e
Confidence            45666776654  4443333    56889999998653 11221    11235777877755321111111        1


Q ss_pred             HHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          112 AIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       112 ~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ++ .+|++|+.+.|..+-  |.+.+    ..+|.+|+.+.|..  .++.-+......|.+|+.+..
T Consensus       306 aF-~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          306 VF-AGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEE
T ss_pred             ee-cCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEE
Confidence            11 478999999997542  44432    35899999999964  354344445578999998864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.11  E-value=0.08  Score=45.62  Aligned_cols=124  Identities=14%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             hCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444           33 NAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  110 (252)
Q Consensus        33 ~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~  110 (252)
                      .+.+|+.+.+...  .+....+    ..|..|+.+.+...  ++.-+ ......|.+|+.+.+.-..-.++.        
T Consensus       215 ~~~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~i~~i~~--------  279 (379)
T 4h09_A          215 YGKNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAKVKTVPY--------  279 (379)
T ss_dssp             TCSSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCCCSEECT--------
T ss_pred             cccccceeeeccceeEEccccc----cCCccceEEEcCCC--ccEeC-ccccceeehhccccccccceeccc--------
Confidence            4556666666554  2222212    35677777777542  21100 011134556665543211111111        


Q ss_pred             HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .+ ...|++|+.+.+..+.++..+ .....+|++|+.+.|..  .++.-+......|.+|+.+..
T Consensus       280 ~a-F~~c~~L~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          280 LL-CSGCSNLTKVVMDNSAIETLE-PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TT-TTTCTTCCEEEECCTTCCEEC-TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             cc-cccccccccccccccccceeh-hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            11 146888999988776543211 11235788999988853  233223333466788877764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=89.50  E-value=0.066  Score=46.62  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=27.3

Q ss_pred             cCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          116 TMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       116 ~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .|++|+.+.|..+-  |...+    ..+|.+|+.+.+...  ++.-+......|++|+.+..
T Consensus       318 ~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          318 SCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred             CCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence            56666666664331  32221    236667777666542  32222333455666666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.92  E-value=0.17  Score=43.92  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=33.0

Q ss_pred             hcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          115 STMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ..|++|+.+.+..+.  |...    ...+|++|+.+.+...  ++.-+......|+.|+.+..
T Consensus       159 ~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          159 ATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred             cccCCCcEEecCCccceeccc----cccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence            367888888886544  3332    2457888888887642  32223333456777776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=85.26  E-value=0.057  Score=46.58  Aligned_cols=140  Identities=11%  Similarity=0.147  Sum_probs=76.7

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      |.+|+.+.+......- -......|.+|+.+.++.+  .|....+    ..|.+|+.+.+...  ++.-+- .....|++
T Consensus       216 ~~~l~~i~~~~~~~~i-~~~~f~~~~~L~~i~lp~~v~~I~~~aF----~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~  287 (379)
T 4h09_A          216 GKNLKKITITSGVTTL-GDGAFYGMKALDEIAIPKNVTSIGSFLL----QNCTALKTLNFYAK--VKTVPY-LLCSGCSN  287 (379)
T ss_dssp             CSSCSEEECCTTCCEE-CTTTTTTCSSCCEEEECTTCCEECTTTT----TTCTTCCEEEECCC--CSEECT-TTTTTCTT
T ss_pred             ccccceeeeccceeEE-ccccccCCccceEEEcCCCccEeCcccc----ceeehhcccccccc--ceeccc-cccccccc
Confidence            5566666665431100 0112246889999999876  4443333    56889999998653  221111 12246888


Q ss_pred             hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHh
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG  165 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~  165 (252)
                      |+.+.+.       +..+..-+..++ .+|++|+.+.|..+-  |...+    ..+|++|+.+.+..  .++.-+.....
T Consensus       288 L~~i~l~-------~~~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~--~v~~I~~~aF~  353 (379)
T 4h09_A          288 LTKVVMD-------NSAIETLEPRVF-MDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPK--SITLIESGAFE  353 (379)
T ss_dssp             CCEEEEC-------CTTCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCT--TCCEECTTTTT
T ss_pred             ccccccc-------ccccceehhhhh-cCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECC--ccCEEchhHhh
Confidence            8777543       211111111122 478999999996542  44332    35899999998854  34322333334


Q ss_pred             cCCCCc
Q 025444          166 NFPNLK  171 (252)
Q Consensus       166 ~~~~L~  171 (252)
                      .|+.++
T Consensus       354 ~c~~~~  359 (379)
T 4h09_A          354 GSSITK  359 (379)
T ss_dssp             TSSCCC
T ss_pred             CCCCCc
Confidence            565443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.92
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.54
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.02
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.34
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.27

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-20  Score=158.57  Aligned_cols=158  Identities=22%  Similarity=0.197  Sum_probs=126.4

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      ..+|++|+++++ .++..+..+..+|++|++|+|.+|.+++.++..++ ++++|++|++++|..+++.++..++..||+|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhc
Confidence            457899999887 66777888888999999999999998888888774 6889999999999999999999998889988


Q ss_pred             hhhcccCeecccCCCC-cCcHHHH-HHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH
Q 025444           89 VVLCRNMHPLDTADKL-SQDDEAN-AIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  164 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~-~~~~~~~-~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~  164 (252)
                      +.|       ++++|. +++.++. +++..+++|++|+++++.  +++.++..++.+||+|++|++++|..++...-...
T Consensus       124 ~~L-------~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         124 DEL-------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             CEE-------ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             ccc-------ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            777       556654 5566654 455557889999998863  88888888888899999999999888865442223


Q ss_pred             hcCCCCceecc
Q 025444          165 GNFPNLKVLGP  175 (252)
Q Consensus       165 ~~~~~L~~L~~  175 (252)
                      ..+++|++|..
T Consensus       197 ~~~~~L~~L~L  207 (284)
T d2astb2         197 FQLNYLQHLSL  207 (284)
T ss_dssp             GGCTTCCEEEC
T ss_pred             cccCcCCEEEC
Confidence            46788888876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.8e-21  Score=160.50  Aligned_cols=160  Identities=20%  Similarity=0.363  Sum_probs=134.7

Q ss_pred             HHHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH-HH
Q 025444            6 ITRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA-IG   82 (252)
Q Consensus         6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~-l~   82 (252)
                      +...|++|++|++++| .++..+..++ ++++|++|+|++| .+++.++..++..|++|++|+|++|..+++.++.. ++
T Consensus        66 l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~  144 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  144 (284)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence            4567999999999998 5677777776 6899999999998 99999999999999999999999999999988865 55


Q ss_pred             hhCchhhhhcccCeecccCCC--CcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCC
Q 025444           83 KHCKLLVVLCRNMHPLDTADK--LSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLD  159 (252)
Q Consensus        83 ~~~~~L~~L~~~l~~l~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~  159 (252)
                      ..+++|+.|       .+.++  .+++.++.+++.+||+|++|+|++|. +++.++..+. +|++|++|+|++|..++..
T Consensus       145 ~~~~~L~~L-------~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         145 HVSETITQL-------NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HSCTTCCEE-------ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGG
T ss_pred             ccccccchh-------hhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChH
Confidence            567888877       44554  36778888999899999999999988 9988877765 6999999999999999655


Q ss_pred             h-HHHHhcCCCCceecc
Q 025444          160 D-KFMKGNFPNLKVLGP  175 (252)
Q Consensus       160 ~-~~l~~~~~~L~~L~~  175 (252)
                      + ..+ ..+|+|+.|..
T Consensus       217 ~l~~L-~~~~~L~~L~l  232 (284)
T d2astb2         217 TLLEL-GEIPTLKTLQV  232 (284)
T ss_dssp             GGGGG-GGCTTCCEEEC
T ss_pred             HHHHH-hcCCCCCEEee
Confidence            4 333 56899999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=4.6e-11  Score=101.67  Aligned_cols=158  Identities=19%  Similarity=0.225  Sum_probs=113.1

Q ss_pred             cCCCccEEEecCC-CCHHHHHHH------------HHhCCCCcEEEccCCCCCHHHHHHH---HhcCCCccEEeccCCCC
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLI------------AENAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSK   72 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i------------~~~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~L~~L~Ls~c~~   72 (252)
                      .+++|++|+++++ .++.....+            ....+.|+.|.++++.+++.++..+   .+.++.|+.|+|++| .
T Consensus       119 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~  197 (344)
T d2ca6a1         119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-G  197 (344)
T ss_dssp             HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-C
T ss_pred             ccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccc-c
Confidence            5789999999986 443322222            2457899999999998887655444   456899999999996 5


Q ss_pred             CCHHHHHH-HHh---hCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHh-----
Q 025444           73 IGAPALEA-IGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILS-----  140 (252)
Q Consensus        73 i~~~~l~~-l~~---~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~-----  140 (252)
                      ++..++.. +..   .+++|+.|       +++++.+++.++.+++   ..+++|++|+|++|.|++.++..++.     
T Consensus       198 i~~~g~~~~l~~~l~~~~~L~~L-------~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         198 IRPEGIEHLLLEGLAYCQELKVL-------DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEE-------ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             ccccccccchhhhhcchhhhccc-------ccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            88877654 333   34555444       6777777777776665   46899999999999999998887765     


Q ss_pred             cCCCCCEEeccCCCCccCCh-H----HHHhcCCCCceecc
Q 025444          141 SCALLEFLDLRGCWDVKLDD-K----FMKGNFPNLKVLGP  175 (252)
Q Consensus       141 ~~~~L~~LdL~~C~~i~~~~-~----~l~~~~~~L~~L~~  175 (252)
                      ..+.|++|+|+++. ++..+ .    .+...++.|++|..
T Consensus       271 ~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         271 ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEEC
Confidence            23679999999974 64333 2    23346788888865

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=6.3e-11  Score=90.74  Aligned_cols=125  Identities=13%  Similarity=0.130  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHh---cCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecc
Q 025444           24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   99 (252)
Q Consensus        24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~   99 (252)
                      ++.+..+....|+|++|+|.++ .+++.++..++.   .+++|++|+|++| .+++.++.+++..++..+.+    +.+.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l----~~l~   80 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL----KSLN   80 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSC----CEEE
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccc----hhhh
Confidence            5668888888999999999985 899988777765   5789999999996 79999988888765544433    5567


Q ss_pred             cCCCCcCcHHHHHHHh---cCCCCcEEEec--CcccCHHHHHHHH---hcCCCCCEEeccCC
Q 025444          100 TADKLSQDDEANAIAS---TMPKLKRLEMA--YHVISTEIVLKIL---SSCALLEFLDLRGC  153 (252)
Q Consensus       100 l~~~~~~~~~~~~l~~---~~~~L~~L~L~--~~~it~~~l~~i~---~~~~~L~~LdL~~C  153 (252)
                      +.++.+.+.++.++++   ..++|+.++|.  +|.+++.+...++   +.++.|+.|++.+.
T Consensus        81 l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          81 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            8888889998887774   46889887765  4559998766654   48999999999775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.9e-11  Score=102.82  Aligned_cols=140  Identities=18%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             cCCCccEEEecCC-CCHHHH---HHHHHhCCCCcEEEccCCCCCHHHHHHHHhc----CCCccEEeccCCCCCCHHHHHH
Q 025444            9 SSGSLRKLCVSGL-HNDMMF---SLIAENAGSLQTLRLPRSEMSDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEA   80 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l---~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~----~~~L~~L~Ls~c~~i~~~~l~~   80 (252)
                      .+..|+.|+++++ ......   .......+.++.++++++.+++.++..++..    .+.|+.+.+++| .++..++..
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~  331 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSH  331 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc-chhhhhhhh
Confidence            3567788888775 332222   2223456777777777777777776665432    356777777775 466665555


Q ss_pred             HHh---hCchhhhhcccCeecccCCCCcCcHHHHHHHh----cCCCCcEEEecCcccCHHHHHHH---HhcCCCCCEEec
Q 025444           81 IGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKI---LSSCALLEFLDL  150 (252)
Q Consensus        81 l~~---~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~----~~~~L~~L~L~~~~it~~~l~~i---~~~~~~L~~LdL  150 (252)
                      ++.   .+++|+.|       +++++.+.+.++.++++    ..+.|++|+|++|.|++.++.++   +..+++|++|+|
T Consensus       332 l~~~~~~~~~L~~L-------~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L  404 (460)
T d1z7xw1         332 FSSVLAQNRFLLEL-------QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  404 (460)
T ss_dssp             HHHHHHHCSSCCEE-------ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             cccccccccchhhh-------heeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEEC
Confidence            543   33344433       55666666666655543    34557777777777777665554   345677777777


Q ss_pred             cCCCCcc
Q 025444          151 RGCWDVK  157 (252)
Q Consensus       151 ~~C~~i~  157 (252)
                      +++ .++
T Consensus       405 s~N-~i~  410 (460)
T d1z7xw1         405 SNN-CLG  410 (460)
T ss_dssp             CSS-SCC
T ss_pred             CCC-cCC
Confidence            775 453

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.20  E-value=1.4e-10  Score=98.63  Aligned_cols=59  Identities=17%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             eecccCCCCcCcHHHHH-HH---hcCCCCcEEEecCcccCHHHHHHH---HhcCCCCCEEeccCCC
Q 025444           96 HPLDTADKLSQDDEANA-IA---STMPKLKRLEMAYHVISTEIVLKI---LSSCALLEFLDLRGCW  154 (252)
Q Consensus        96 ~~l~l~~~~~~~~~~~~-l~---~~~~~L~~L~L~~~~it~~~l~~i---~~~~~~L~~LdL~~C~  154 (252)
                      +.+.+..+.+.+.++.. +.   ..+++|++|+|++|.+++.++..+   +..+++|++|+|++|.
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            44566667777665543 22   357788888888888877765544   3577888888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.1e-11  Score=103.18  Aligned_cols=126  Identities=13%  Similarity=0.164  Sum_probs=101.7

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGKHCK   86 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~   86 (252)
                      .+|+.|++++. +++..+..+...+++|++|+|++|.|++.++..++   +.+++|++|+|++| .|++.++..+++.++
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            46899999885 78888888888999999999999999998876665   67899999999985 699999998887543


Q ss_pred             hhhhhcccCeecccCCCCcCcHHHHHHHh---cCCCCcEEEecCcccCHHHHHHHHh
Q 025444           87 LLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTEIVLKILS  140 (252)
Q Consensus        87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~it~~~l~~i~~  140 (252)
                      .   ...+++.++++++.+++.++.+++.   .+++|++|+|++|.|++.++..+..
T Consensus        81 ~---~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~  134 (460)
T d1z7xw1          81 T---PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  134 (460)
T ss_dssp             S---TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             c---CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhh
Confidence            2   1223355688888888888776654   5799999999999998887666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.19  E-value=1.3e-10  Score=89.23  Aligned_cols=125  Identities=6%  Similarity=0.097  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHh---cCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecc
Q 025444           24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   99 (252)
Q Consensus        24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~   99 (252)
                      ++.+..+....|+|++|+|+++ .+++.++..++.   ..++|++|+|++| .+++.++.+++..++.-+.|    +.++
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L----~~L~   78 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSL----RVLN   78 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSC----CEEE
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccc----ccee
Confidence            3456677777788888888775 677777665543   4567888888875 57777776666543222222    4446


Q ss_pred             cCCCCcCcHHHHHHHhc---CCCCcEEEecCcc---cCHHHHH---HHHhcCCCCCEEeccCC
Q 025444          100 TADKLSQDDEANAIAST---MPKLKRLEMAYHV---ISTEIVL---KILSSCALLEFLDLRGC  153 (252)
Q Consensus       100 l~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~---it~~~l~---~i~~~~~~L~~LdL~~C  153 (252)
                      ++++.+.+.++.++++.   .+.|++|+|++|.   +++.+..   ..+...+.|+.|++++.
T Consensus        79 L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          79 VESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             eehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            67777777777766644   4679999998774   6666544   44457889999998775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.04  E-value=1.3e-09  Score=83.43  Aligned_cols=122  Identities=11%  Similarity=0.164  Sum_probs=92.4

Q ss_pred             HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHh---cCCCCcEEEec
Q 025444           50 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMA  126 (252)
Q Consensus        50 ~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~---~~~~L~~L~L~  126 (252)
                      +.+..+....|+|++|+|+++..++..++..++..+..-+.|    +.++++++.+.+.++.+++.   ..+.|++|+|+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L----~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI----EKFSLANTAISDSEARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC----CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCcc----ceeeccccccchhHHHHHhhhhhhcccccceeee
Confidence            567888888999999999988889999998887755443333    45578888888888876653   57999999999


Q ss_pred             CcccCHHHHHHHHh---cCCCCCEEeccCCCCccCCh---H---HHHhcCCCCceecc
Q 025444          127 YHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDD---K---FMKGNFPNLKVLGP  175 (252)
Q Consensus       127 ~~~it~~~l~~i~~---~~~~L~~LdL~~C~~i~~~~---~---~l~~~~~~L~~L~~  175 (252)
                      +|.|++.++..+++   ..+.|++|+|+++..-....   .   .+....+.|+.|..
T Consensus        81 ~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l  138 (167)
T d1pgva_          81 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  138 (167)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeC
Confidence            99999999887765   56789999999864332222   1   22355788877754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.8e-11  Score=91.86  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      +.+|++|+|++|+|+.  +..+...+++|+.|+|++| .|+.  +..+ ..+++|+.|       +++++.+..-.. .+
T Consensus        17 ~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N-~i~~--l~~~-~~l~~L~~L-------~ls~N~i~~l~~-~~   82 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRK--LDGF-PLLRRLKTL-------LVNNNRICRIGE-GL   82 (162)
T ss_dssp             TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCE--ECCC-CCCSSCCEE-------ECCSSCCCEECS-CH
T ss_pred             cCcCcEEECCCCCCCc--cCccccccccCCEEECCCC-CCCc--cCCc-ccCcchhhh-------hcccccccCCCc-cc
Confidence            3456666666665543  1223344566666666664 3332  1111 223344333       333333322111 12


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceec
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  174 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~  174 (252)
                      ...+|+|++|++++|.|++..-...+..+|+|++|++++|+-.....  ..+...+|+|++|.
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            23677788888888776543222234577888888888775443333  23456677777775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.92  E-value=2.1e-08  Score=76.23  Aligned_cols=123  Identities=11%  Similarity=0.107  Sum_probs=93.1

Q ss_pred             HHcCCCccEEEecCC--CCHHHHHHHHH---hCCCCcEEEccCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHH
Q 025444            7 TRSSGSLRKLCVSGL--HNDMMFSLIAE---NAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPAL   78 (252)
Q Consensus         7 ~~~~~~L~~L~l~~~--~~d~~l~~i~~---~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~Ls~c~~i~~~~l   78 (252)
                      ...+++|++|++++.  +++..+..++.   .+++|++|+|++|.+++.++..++   +..+.|+.|++++| .+++.++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhH
Confidence            345799999999984  67777766664   678999999999999998776654   45799999999986 6899999


Q ss_pred             HHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHh---cCCCCcEEEecCcccCH
Q 025444           79 EAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVIST  132 (252)
Q Consensus        79 ~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~it~  132 (252)
                      ..+++.+...+.|..  -.+.+.+..+.+.++.+|+.   .+++|++|++.++....
T Consensus        92 ~~l~~~l~~~~~L~~--l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_          92 LALVEALQSNTSLIE--LRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             HHHHHGGGGCSSCCE--EECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHhCccccE--EeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            998876555443310  12244556678888777764   68999999999877443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.6e-10  Score=87.04  Aligned_cols=128  Identities=12%  Similarity=0.134  Sum_probs=87.7

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      +.+|++|+++++.-.. +..+...+++|+.|+|++|.|+.  +.. ...+++|++|++++|. ++.-. ..+...+++|+
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~-i~~l~-~~~~~~l~~L~   90 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNR-ICRIG-EGLDQALPDLT   90 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSC-CCEEC-SCHHHHCTTCC
T ss_pred             cCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhccccc-ccCCC-ccccccccccc
Confidence            4579999999972111 22344578999999999998775  222 3678999999999974 54311 12345677887


Q ss_pred             hhcccCeecccCCCCcCcHH-HHHHHhcCCCCcEEEecCcccCHHH--HHHHHhcCCCCCEEecc
Q 025444           90 VLCRNMHPLDTADKLSQDDE-ANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLR  151 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~it~~~--l~~i~~~~~~L~~LdL~  151 (252)
                      .|       .++++.+.+-. +..+ ..+|+|++|++++|+++...  -..++..+|+|++||-.
T Consensus        91 ~L-------~L~~N~i~~~~~l~~l-~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 EL-------ILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EE-------ECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cc-------eecccccccccccccc-ccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            77       45555554422 2333 48999999999999976432  23456789999999854

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=7.4e-09  Score=81.10  Aligned_cols=140  Identities=16%  Similarity=0.151  Sum_probs=79.1

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .++|++|+++++ +++  +..+ .++++|++|+|++|.+++  +.. +.++++|+.|++++|....-.   .+ ..+++|
T Consensus        39 l~~l~~L~l~~~~i~~--l~~l-~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~---~l-~~l~~L  108 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS--IDGV-EYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT---PL-ANLTNL  108 (199)
T ss_dssp             HTTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG---GG-TTCTTC
T ss_pred             hcCCCEEECCCCCCCC--cccc-ccCCCcCcCccccccccC--ccc-ccCCccccccccccccccccc---cc-cccccc
Confidence            367889999886 221  2222 478999999999997775  222 367899999999987543322   22 356666


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP  168 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~  168 (252)
                      +.|.+.       ++......  . ...+++|+.|++++|.++..  . .+..+++|+.|++.+|.-. .. .. ...++
T Consensus       109 ~~L~l~-------~~~~~~~~--~-~~~l~~L~~L~l~~n~l~~~--~-~l~~~~~L~~L~l~~n~l~-~l-~~-l~~l~  172 (199)
T d2omxa2         109 TGLTLF-------NNQITDID--P-LKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLNFSSNQVT-DL-KP-LANLT  172 (199)
T ss_dssp             SEEECC-------SSCCCCCG--G-GTTCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCC-CC-GG-GTTCT
T ss_pred             cccccc-------cccccccc--c-cchhhhhHHhhhhhhhhccc--c-ccccccccccccccccccc-CC-cc-ccCCC
Confidence            666432       22222111  1 12566666666666665431  1 1345666666666665322 11 11 23455


Q ss_pred             CCceecc
Q 025444          169 NLKVLGP  175 (252)
Q Consensus       169 ~L~~L~~  175 (252)
                      +|+.|..
T Consensus       173 ~L~~L~l  179 (199)
T d2omxa2         173 TLERLDI  179 (199)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            5555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=3.6e-09  Score=76.93  Aligned_cols=59  Identities=19%  Similarity=0.387  Sum_probs=40.1

Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCcee
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVL  173 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L  173 (252)
                      ..+|+|++|++++|+|+.......+..+++|+.|++++.+-....+  ..+.+.+|+|+.|
T Consensus        62 ~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            3678889999998887654322334678899999998854322222  4566778888776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=1.1e-09  Score=86.21  Aligned_cols=149  Identities=17%  Similarity=0.123  Sum_probs=94.0

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      ..++.+.+.+. +.-..+..-...+++|++|+|++|.|+.  +.. +..+++|+.|+|++| .++.  +..+...+++|+
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~   96 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRN-LIKK--IENLDAVADTLE   96 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEE-EECS--CSSHHHHHHHCC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCC--ccc-ccCCccccChhhccc-cccc--cccccccccccc
Confidence            34667777764 2211122223468899999999997765  222 256899999999996 3442  112223344565


Q ss_pred             hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccC--C--h-----
Q 025444           90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL--D--D-----  160 (252)
Q Consensus        90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~--~--~-----  160 (252)
                      .|       .+.++.+..-  ..+ ..+++|++|++++|.|++..-...+..+|+|+.|+|++++-...  .  .     
T Consensus        97 ~L-------~l~~N~i~~l--~~~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r  166 (198)
T d1m9la_          97 EL-------WISYNQIASL--SGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR  166 (198)
T ss_dssp             EE-------ECSEEECCCH--HHH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHH
T ss_pred             cc-------cccccccccc--ccc-cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHH
Confidence            55       4444444432  223 36889999999999988754444567899999999999753221  0  0     


Q ss_pred             HHHHhcCCCCceecc
Q 025444          161 KFMKGNFPNLKVLGP  175 (252)
Q Consensus       161 ~~l~~~~~~L~~L~~  175 (252)
                      ..+...+|+|+.|..
T Consensus       167 ~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         167 IEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHHHCSSCCEESS
T ss_pred             HHHHHHCCCcCEeCC
Confidence            123567899888853

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=4.1e-08  Score=77.45  Aligned_cols=146  Identities=20%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .+|++|.++++ +++  +.. ..++++|++|+|++|.|++  +..+ ..+++|+.|++++| .++.  +..+ ..+++|+
T Consensus        46 ~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~L~~n~i~~--l~~~-~~l~~L~~L~l~~n-~i~~--l~~l-~~l~~L~  115 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTD--IKPL-ANLKNLGWLFLDEN-KVKD--LSSL-KDLKKLK  115 (210)
T ss_dssp             HTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCC--CGGG-TTCTTCCEEECCSS-CCCC--GGGG-TTCTTCC
T ss_pred             cCccEEECcCCCCCC--chh-HhhCCCCCEEeCCCccccC--cccc-ccCccccccccccc-cccc--cccc-ccccccc
Confidence            35777777775 221  111 2467788888888886665  2222 46778888888775 3543  2222 2355566


Q ss_pred             hhcccC---------------eecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444           90 VLCRNM---------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus        90 ~L~~~l---------------~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      .|.+..               ..+.+.++.+.+..   ....+++|+++++++|.+++.  .. +.++++|+.|+|++| 
T Consensus       116 ~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N-  188 (210)
T d1h6ta2         116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKN-  188 (210)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS-
T ss_pred             ccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccc--cc-ccCCCCCCEEECCCC-
Confidence            554321               12223333332211   123577788888887776542  21 456778888888876 


Q ss_pred             CccCChHHHHhcCCCCceecc
Q 025444          155 DVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       155 ~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      .++.- .. ...+++|++|..
T Consensus       189 ~i~~l-~~-l~~l~~L~~L~L  207 (210)
T d1h6ta2         189 HISDL-RA-LAGLKNLDVLEL  207 (210)
T ss_dssp             CCCBC-GG-GTTCTTCSEEEE
T ss_pred             CCCCC-hh-hcCCCCCCEEEc
Confidence            34321 22 245666766653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=3.4e-08  Score=77.18  Aligned_cols=121  Identities=19%  Similarity=0.181  Sum_probs=57.1

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      +++|+.|+++++ .++  +.. ...+++|+.|.+++|.+..  +.. ...+++|+.|++++|.......    ...+++|
T Consensus        61 l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L~l~~~~~~~~~~----~~~l~~L  130 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDP----LKNLTNL  130 (199)
T ss_dssp             CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGG----GTTCTTC
T ss_pred             CCCcCcCccccccccC--ccc-ccCCccccccccccccccc--ccc-cccccccccccccccccccccc----cchhhhh
Confidence            556666666664 221  111 2355666666666664332  111 2456666666666654332211    1234444


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      +.|.       ++++.+..-.  .+ ..+++|+.|++.+|.+++-  . .+.++++|++|+|++|
T Consensus       131 ~~L~-------l~~n~l~~~~--~l-~~~~~L~~L~l~~n~l~~l--~-~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         131 NRLE-------LSSNTISDIS--AL-SGLTSLQQLNFSSNQVTDL--K-PLANLTTLERLDISSN  182 (199)
T ss_dssp             SEEE-------CCSSCCCCCG--GG-TTCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSS
T ss_pred             HHhh-------hhhhhhcccc--cc-cccccccccccccccccCC--c-cccCCCCCCEEECCCC
Confidence            4442       2232222111  11 2556666666666665432  1 1345666666666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.54  E-value=6e-08  Score=77.12  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      .+|+.|++.++ +++  +..+ .++++|+.|+|++|.++.  +.. ...+++|+.|++++|. ++.  +..++ .+++|+
T Consensus        41 ~~L~~L~l~~~~i~~--l~~l-~~l~~L~~L~ls~n~i~~--~~~-l~~l~~l~~l~~~~n~-~~~--i~~l~-~l~~L~  110 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT--IEGV-QYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNP-LKN--VSAIA-GLQSIK  110 (227)
T ss_dssp             HTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCC-CSC--CGGGT-TCTTCC
T ss_pred             CCcCEEECCCCCCCc--chhH-hcCCCCcEeecCCceeec--ccc-cccccccccccccccc-ccc--ccccc-cccccc
Confidence            56888888886 221  2322 478888888888886664  112 3667888888888753 332  22222 355565


Q ss_pred             hhc
Q 025444           90 VLC   92 (252)
Q Consensus        90 ~L~   92 (252)
                      .+.
T Consensus       111 ~l~  113 (227)
T d1h6ua2         111 TLD  113 (227)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.53  E-value=5e-09  Score=82.35  Aligned_cols=125  Identities=18%  Similarity=0.221  Sum_probs=84.2

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..++|++|++++. +++  +..+ ..+++|+.|+|++|.|+.  +..+...+++|+.|++++| .++.  +..+ ..+++
T Consensus        46 ~L~~L~~L~Ls~n~I~~--i~~l-~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N-~i~~--l~~~-~~l~~  116 (198)
T d1m9la_          46 TLKACKHLALSTNNIEK--ISSL-SGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGI-EKLVN  116 (198)
T ss_dssp             HTTTCCEEECSEEEESC--CCCH-HHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEE-ECCC--HHHH-HHHHH
T ss_pred             cccccceeECcccCCCC--cccc-cCCccccChhhccccccc--ccccccccccccccccccc-cccc--cccc-ccccc
Confidence            3678999999986 321  2222 368899999999997765  2222233578999999996 5654  2333 23556


Q ss_pred             hhhhcccCeecccCCCCcCcHHH-HHHHhcCCCCcEEEecCcccCHHH---------HHHHHhcCCCCCEEec
Q 025444           88 LVVLCRNMHPLDTADKLSQDDEA-NAIASTMPKLKRLEMAYHVISTEI---------VLKILSSCALLEFLDL  150 (252)
Q Consensus        88 L~~L~~~l~~l~l~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~it~~~---------l~~i~~~~~~L~~LdL  150 (252)
                      |+.|       +++++.+.+-.. ..+ ..+|+|+.|+|++|+++...         ...++..+|+|+.||-
T Consensus       117 L~~L-------~L~~N~i~~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         117 LRVL-------YMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             SSEE-------EESEEECCCHHHHHHH-TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccc-------ccccchhccccccccc-cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            6666       555555555433 344 48999999999999865432         1345678999999983

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=2.2e-07  Score=78.74  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=17.2

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      .+|+|++|++++|+|+.-  .. +.+|++|++|++++|
T Consensus       327 ~l~~L~~L~L~~n~l~~l--~~-l~~l~~L~~L~l~~N  361 (384)
T d2omza2         327 SLTKLQRLFFANNKVSDV--SS-LANLTNINWLSAGHN  361 (384)
T ss_dssp             GCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCCCCCC--hh-HcCCCCCCEEECCCC
Confidence            455555555555554431  11 234555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.34  E-value=2.1e-07  Score=73.82  Aligned_cols=147  Identities=21%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      .+++|+.|+++++ +++  +.. ...+++|+.|.+.+|.+++  +..+ ..+++|+.|.+++|.......+    ...+.
T Consensus        61 ~l~~L~~L~ls~n~i~~--~~~-l~~l~~l~~l~~~~n~~~~--i~~l-~~l~~L~~l~l~~~~~~~~~~~----~~~~~  130 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN--VSAI-AGLQSIKTLDLTSTQITDVTPL----AGLSN  130 (227)
T ss_dssp             GCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC--CGGG-TTCTTCCEEECTTSCCCCCGGG----TTCTT
T ss_pred             cCCCCcEeecCCceeec--ccc-ccccccccccccccccccc--cccc-cccccccccccccccccccchh----ccccc
Confidence            4789999999986 222  111 3578899999999986664  2222 5789999999988754332111    11222


Q ss_pred             hhhhcc---------------cCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444           88 LVVLCR---------------NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  152 (252)
Q Consensus        88 L~~L~~---------------~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~  152 (252)
                      ++.+.+               +++.+.+.++.+.+...  + .++++|++|+|++|.+++-  .. +.++++|++|+|++
T Consensus       131 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l-~~l~~L~~L~Ls~n~l~~l--~~-l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--L-ANLSKLTTLKADDNKISDI--SP-LASLPNLIEVHLKN  204 (227)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECTT
T ss_pred             hhhhhchhhhhchhhhhccccccccccccccccccchh--h-cccccceecccCCCccCCC--hh-hcCCCCCCEEECcC
Confidence            222211               12233444443332211  2 3567777777777776542  11 34677777777777


Q ss_pred             CCCccCChHHHHhcCCCCceec
Q 025444          153 CWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       153 C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      | +++.-. . ...+++|+.|.
T Consensus       205 N-~lt~i~-~-l~~l~~L~~L~  223 (227)
T d1h6ua2         205 N-QISDVS-P-LANTSNLFIVT  223 (227)
T ss_dssp             S-CCCBCG-G-GTTCTTCCEEE
T ss_pred             C-cCCCCc-c-cccCCCCCEEE
Confidence            6 343221 1 24556666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=7.1e-08  Score=69.80  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=76.7

Q ss_pred             cEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhc
Q 025444           14 RKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC   92 (252)
Q Consensus        14 ~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~   92 (252)
                      |.|++++. .+.  +..+ ..+++|++|++++|.|+.  +......+++|+.|+++++ .++.  +..+ ..+++|+.| 
T Consensus         1 R~L~Ls~n~l~~--l~~l-~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N-~i~~--l~~~-~~l~~L~~L-   70 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPRLQEL-   70 (124)
T ss_dssp             SEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSSCCEE-
T ss_pred             CEEEcCCCCCCC--Cccc-ccCCCCCEEECCCCccCc--chhhhhhhhcccccccccc-cccc--cCcc-ccccccCeE-
Confidence            46777775 221  2222 478899999999997764  3222367899999999995 4553  2223 346667666 


Q ss_pred             ccCeecccCCCCcCcHHH-HHHHhcCCCCcEEEecCcccCHHH--HHHHHhcCCCCCEE
Q 025444           93 RNMHPLDTADKLSQDDEA-NAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFL  148 (252)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~it~~~--l~~i~~~~~~L~~L  148 (252)
                            .++++.+.+-.. ..+ ..+|+|+.|++++|+++...  ...+...+|+|+.|
T Consensus        71 ------~l~~N~i~~~~~~~~l-~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 ------LLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ------ECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ------ECCCCccCCCCCchhh-cCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                  444444443222 233 47999999999999976432  34566678999877

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.23  E-value=6.9e-07  Score=70.13  Aligned_cols=100  Identities=24%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444           34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  113 (252)
Q Consensus        34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l  113 (252)
                      +.+|+.|.+.+|.++.  +.. ++.+++|++|+|++| .++.  +..+ ..+++|+.|.+       +++.+.+-.  .+
T Consensus        45 L~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~L~~n-~i~~--l~~~-~~l~~L~~L~l-------~~n~i~~l~--~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGN-KLTD--IKPL-ANLKNLGWLFL-------DENKVKDLS--SL  108 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSS-CCCC--CGGG-TTCTTCCEEEC-------CSSCCCCGG--GG
T ss_pred             hcCccEEECcCCCCCC--chh-HhhCCCCCEEeCCCc-cccC--cccc-ccCcccccccc-------ccccccccc--cc
Confidence            4589999999997765  222 367999999999996 4654  2223 35677776644       343333211  12


Q ss_pred             HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                       ..+++|+.|++++|.++..  . .+.++++|+.++++++
T Consensus       109 -~~l~~L~~L~l~~~~~~~~--~-~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2         109 -KDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNN  144 (210)
T ss_dssp             -TTCTTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSS
T ss_pred             -ccccccccccccccccccc--c-cccccccccccccccc
Confidence             3567777777777764421  1 1335566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.6e-07  Score=67.89  Aligned_cols=58  Identities=26%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCC--h----HHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD--D----KFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~--~----~~l~~~~~~L~~L~  174 (252)
                      .+++|+.|+|++|.|++..-...+. ..+|+.|++++.+-....  .    ..+.+.+|+|++|.
T Consensus        89 ~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          89 KAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            4556666666666654422222222 334566666654322211  0    13445566666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=7.4e-08  Score=78.57  Aligned_cols=154  Identities=19%  Similarity=0.100  Sum_probs=87.6

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   89 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~   89 (252)
                      ++|+.|+|++. ++. .-......+++|++|+|++|.|+.  +..+ ..+++|+.|+|++|. ++..  ......+++|+
T Consensus        31 ~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~Ls~N~-l~~~--~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQ-LQSL--PLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSC-CSSC--CCCTTTCTTCC
T ss_pred             cCCCEEECcCCcCCC-cCHHHhhccccccccccccccccc--cccc-ccccccccccccccc-cccc--ccccccccccc
Confidence            57889999885 221 111122468889999999987764  2222 467889999998863 4321  12234566666


Q ss_pred             hhcccC-----------------eecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444           90 VLCRNM-----------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  152 (252)
Q Consensus        90 ~L~~~l-----------------~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~  152 (252)
                      .|.+..                 ..+.+.++.+..-.. .+...+++|+.|++++|.++... ...+..+++|++|+|++
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred             cccccccccceeeccccccccccccccccccccceecc-ccccccccchhcccccccccccC-ccccccccccceeeccc
Confidence            664432                 122233322221111 11235778888888888866432 12345788888888888


Q ss_pred             CCCccCChHHHHhcCCCCceecc
Q 025444          153 CWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       153 C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      +. ++.-...+. ..++|+.|..
T Consensus       182 N~-L~~lp~~~~-~~~~L~~L~L  202 (266)
T d1p9ag_         182 NS-LYTIPKGFF-GSHLLPFAFL  202 (266)
T ss_dssp             SC-CCCCCTTTT-TTCCCSEEEC
T ss_pred             CC-CcccChhHC-CCCCCCEEEe
Confidence            64 432222222 3566777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.02  E-value=1.4e-06  Score=73.60  Aligned_cols=123  Identities=18%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHH--------------------HHHHHHhcCCCccEEec
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDS--------------------IVAQIAGRLSAVTFLDL   67 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~--------------------~l~~l~~~~~~L~~L~L   67 (252)
                      .+++|+.|+++++ .+.  +.. ...+++|++|.++++.++.-                    ++.. ...+++++.|++
T Consensus       239 ~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~l  314 (384)
T d2omza2         239 SLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTL  314 (384)
T ss_dssp             GCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEEC
T ss_pred             cccccchhccccCccCC--CCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccc-cchhcccCeEEC
Confidence            3566777776664 111  111 12456666666666543320                    0111 355678888888


Q ss_pred             cCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCE
Q 025444           68 SYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEF  147 (252)
Q Consensus        68 s~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~  147 (252)
                      +++ .+++-  .. ...+|+|++|       .++++.+++-.  .+ ..+++|++|++++|+|++-  .. +.++++|+.
T Consensus       315 s~n-~l~~l--~~-l~~l~~L~~L-------~L~~n~l~~l~--~l-~~l~~L~~L~l~~N~l~~l--~~-l~~l~~L~~  377 (384)
T d2omza2         315 YFN-NISDI--SP-VSSLTKLQRL-------FFANNKVSDVS--SL-ANLTNINWLSAGHNQISDL--TP-LANLTRITQ  377 (384)
T ss_dssp             CSS-CCSCC--GG-GGGCTTCCEE-------ECCSSCCCCCG--GG-GGCTTCCEEECCSSCCCBC--GG-GTTCTTCSE
T ss_pred             CCC-CCCCC--cc-cccCCCCCEE-------ECCCCCCCCCh--hH-cCCCCCCEEECCCCcCCCC--hh-hccCCCCCE
Confidence            875 45431  12 2456777666       55555554322  34 4799999999999998753  22 578999999


Q ss_pred             EeccC
Q 025444          148 LDLRG  152 (252)
Q Consensus       148 LdL~~  152 (252)
                      |+|++
T Consensus       378 L~L~~  382 (384)
T d2omza2         378 LGLND  382 (384)
T ss_dssp             EECCC
T ss_pred             eeCCC
Confidence            99986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.5e-07  Score=77.23  Aligned_cols=131  Identities=18%  Similarity=0.073  Sum_probs=70.2

Q ss_pred             HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444           32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  111 (252)
Q Consensus        32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~  111 (252)
                      ..+++|++|.+.+|.+.... ......+++|+.++++++ .++...-. ....+++|+.|       +++++.+..-...
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N-~l~~i~~~-~f~~~~~L~~L-------~l~~N~l~~l~~~  171 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDN-ALQALPDD-TFRDLGNLTHL-------FLHGNRISSVPER  171 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEE-------ECCSSCCCEECTT
T ss_pred             cccccCCEEecCCccccccc-ccccchhcccchhhhccc-cccccChh-Hhccccchhhc-------ccccCcccccchh
Confidence            35677888888877543211 112244677888888774 34321111 11234555555       3333333221111


Q ss_pred             HHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444          112 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  175 (252)
Q Consensus       112 ~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~  175 (252)
                      ++ .++++|+.|.+++|.++... ...+.++++|++|+++++...+.. ......+++|+.|..
T Consensus       172 ~f-~~l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         172 AF-RGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRL  232 (284)
T ss_dssp             TT-TTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEEC
T ss_pred             hh-ccccccchhhhhhccccccC-hhHhhhhhhccccccccccccccc-ccccccccccCEEEe
Confidence            22 36778888888877765322 233456778888888876443323 333356777777754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5e-07  Score=73.46  Aligned_cols=136  Identities=19%  Similarity=0.171  Sum_probs=83.2

Q ss_pred             cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444            9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   87 (252)
Q Consensus         9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~   87 (252)
                      ..++|++|+++++ ++.  +... ..+++|+.|+|++|+++.  +...+..+++|+.|+++++...+ .. ......+++
T Consensus        53 ~l~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~l~~~~~~~-~~-~~~~~~l~~  125 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTS-LP-LGALRGLGE  125 (266)
T ss_dssp             TCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCC-CC-SSTTTTCTT
T ss_pred             ccccccccccccccccc--cccc-cccccccccccccccccc--cccccccccccccccccccccce-ee-ccccccccc
Confidence            3678999999986 221  1111 357899999999997664  22234668899999998864221 00 011122333


Q ss_pred             hhhhcc-----------------cCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEec
Q 025444           88 LVVLCR-----------------NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL  150 (252)
Q Consensus        88 L~~L~~-----------------~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL  150 (252)
                      ++.|.+                 ++..+.++++.++.....++ ..+++|++|+|++|.|+.  +..-+-..++|+.|+|
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL-NGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT-TTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEEC
T ss_pred             cccccccccccceeccccccccccchhcccccccccccCcccc-ccccccceeecccCCCcc--cChhHCCCCCCCEEEe
Confidence            333322                 22334555655543322223 378999999999999773  3222336899999999


Q ss_pred             cCCC
Q 025444          151 RGCW  154 (252)
Q Consensus       151 ~~C~  154 (252)
                      ++.+
T Consensus       203 ~~Np  206 (266)
T d1p9ag_         203 HGNP  206 (266)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.79  E-value=3e-07  Score=71.16  Aligned_cols=110  Identities=15%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      +++++|.|++|.|+...-......+++|++|+|+++. ++.... ......++|+.|.       ++++.+..-...++ 
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~-~~~~~~~~L~~L~-------Ls~N~l~~l~~~~F-   98 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQ-------LGENKIKEISNKMF-   98 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEE-------CCSCCCCEECSSSS-
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccc-cccccccccceee-------eccccccccCHHHH-
Confidence            5789999999877542222223568899999998853 432111 1122345565553       33333322111122 


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      .++++|++|+|++|.|+... ...+..+++|++|+|++.+-
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred             hCCCcccccccCCccccccC-HHHhcCCccccccccccccc
Confidence            36889999999999876421 12345788999999987543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=1.6e-06  Score=71.51  Aligned_cols=59  Identities=19%  Similarity=-0.004  Sum_probs=32.0

Q ss_pred             CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      ++|+.|+++++.-...-......+++|++|.+++|.++.-. ...+.++++|+.|++++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccc-hhhhhCCCccCEecccCC
Confidence            56777887775111101111245677888888777444311 111245677777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.9e-06  Score=70.41  Aligned_cols=57  Identities=16%  Similarity=0.041  Sum_probs=26.7

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  174 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~  174 (252)
                      .+++|++|++++|.++... ...+.++++|+.|+++++......... ...+++|+.|.
T Consensus       151 ~~~~L~~L~l~~N~l~~l~-~~~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~  207 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLY  207 (284)
T ss_dssp             TCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEE
T ss_pred             cccchhhcccccCcccccc-hhhhccccccchhhhhhccccccChhH-hhhhhhccccc
Confidence            4556666666666544211 112235566666666655333222222 23445555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=9.8e-06  Score=60.79  Aligned_cols=128  Identities=19%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             HHcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhC
Q 025444            7 TRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHC   85 (252)
Q Consensus         7 ~~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~   85 (252)
                      .+..+..+.|+++++..+..+.    ....+..++...+  ....+..+...+++|++|+|++| .|+. .++......+
T Consensus        18 ~~~~~~~~~Ldls~l~~~~~l~----~~~~~~~l~~~~~--~~~~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l   90 (162)
T d1koha1          18 KRYDGSQQALDLKGLRSDPDLV----AQNIDVVLNRRSS--MAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKA   90 (162)
T ss_dssp             TTBCSSSCCBCCCCCSSCTTTT----TTTCCCCTTSHHH--HHHHHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHS
T ss_pred             hhcchhhCeeecccCCCCchhh----hccchhhcchhhh--HhhhhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhC
Confidence            3445678888888764322111    1112222211111  11234444556777888888775 3443 2333344556


Q ss_pred             chhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH------HHHHHHHhcCCCCCEEe
Q 025444           86 KLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST------EIVLKILSSCALLEFLD  149 (252)
Q Consensus        86 ~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~------~~l~~i~~~~~~L~~Ld  149 (252)
                      ++|+.|       +++++.+.+-...... ...+|++|++++|+++.      .....+.+.+|+|+.||
T Consensus        91 ~~L~~L-------~Ls~N~i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          91 PNLKIL-------NLSGNELKSERELDKI-KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTCCCC-------CCTTSCCCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             Cccccc-------ccccCccccchhhhhh-hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            666666       4445555443333323 34578999999988642      34567778899999986

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=3.3e-06  Score=65.07  Aligned_cols=111  Identities=14%  Similarity=0.024  Sum_probs=68.7

Q ss_pred             CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      .+++++|+|++. ++...-......+++|+.|+|+++.++.... .....+++|++|+|+++ .++.-.-.+ ...+++|
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~~~-F~~l~~L  104 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGEN-KIKEISNKM-FLGLHQL  104 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSC-CCCEECSSS-STTCTTC
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-cccccccccceeeeccc-cccccCHHH-HhCCCcc
Confidence            357999999986 3221112233578999999999996654221 22256899999999996 454311111 2346667


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it  131 (252)
                      +.|.++       ++.+..-...++ ..+++|++|+|++|.+.
T Consensus       105 ~~L~L~-------~N~l~~i~~~~f-~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         105 KTLNLY-------DNQISCVMPGSF-EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECC-------SSCCCEECTTSS-TTCTTCCEEECTTCCBC
T ss_pred             cccccC-------CccccccCHHHh-cCCcccccccccccccc
Confidence            666544       333322111112 37899999999999853

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.34  E-value=1.1e-05  Score=66.14  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=20.5

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  153 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C  153 (252)
                      ++++|++|+|++|+|+.  +..-+..+++|++|+|+++
T Consensus       217 ~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         217 NTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             GSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS
T ss_pred             ccccceeeecccccccc--cccccccccCCCEEECCCC
Confidence            56666666666666542  1112345666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.06  E-value=2.6e-06  Score=70.43  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             CccEEEecCC-CC-HHHHHHHHHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           12 SLRKLCVSGL-HN-DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        12 ~L~~L~l~~~-~~-d~~l~~i~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      +++.|++++. .+ ...+..-...+++|++|+|++ +.++.. +..-+.++++|++|+|++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N  111 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccc
Confidence            4666666664 11 001111123566666666665 333321 1112245666666666664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=2.7e-05  Score=57.90  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444          116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  154 (252)
Q Consensus       116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~  154 (252)
                      .+++|++|+|++|+|+.-. ..++ ...+|+.|+|++.+
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~-~~~~-~~~~l~~L~L~~Np  114 (156)
T d2ifga3          78 FTPRLSRLNLSFNALESLS-WKTV-QGLSLQELVLSGNP  114 (156)
T ss_dssp             SCSCCCEEECCSSCCSCCC-STTT-CSCCCCEEECCSSC
T ss_pred             ccccccceeccCCCCcccC-hhhh-ccccccccccCCCc
Confidence            5677777777777755211 1112 23457777777643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.85  E-value=9.7e-06  Score=66.86  Aligned_cols=59  Identities=19%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             CCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444           10 SGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   70 (252)
Q Consensus        10 ~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c   70 (252)
                      .++|++|+++++  .+.. +..-..++++|++|+|++|+++... ......+++|+.++++.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSS
T ss_pred             Cccccccccccccccccc-cccccccccccchhhhccccccccc-cccccchhhhcccccccc
Confidence            577888888753  1111 2111236778888888877544311 111234455555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=4.4e-06  Score=66.30  Aligned_cols=36  Identities=8%  Similarity=0.090  Sum_probs=18.7

Q ss_pred             CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCC
Q 025444           11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEM   47 (252)
Q Consensus        11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i   47 (252)
                      +++++|++++. ++ ..-......+++|++|+|++|.+
T Consensus        29 ~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~   65 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV   65 (242)
T ss_dssp             SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTT
T ss_pred             CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccc
Confidence            35777777664 11 00001123567777777777643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.88  E-value=0.00074  Score=55.18  Aligned_cols=14  Identities=14%  Similarity=0.235  Sum_probs=6.5

Q ss_pred             CCCcEEEccCCCCC
Q 025444           35 GSLQTLRLPRSEMS   48 (252)
Q Consensus        35 ~~L~~L~L~~~~i~   48 (252)
                      ++|++|+|++|+|+
T Consensus        58 ~~L~~L~Ls~N~l~   71 (353)
T d1jl5a_          58 PHLESLVASCNSLT   71 (353)
T ss_dssp             TTCSEEECCSSCCS
T ss_pred             CCCCEEECCCCCCc
Confidence            44555555444433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.00059  Score=50.30  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444           10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL   88 (252)
Q Consensus        10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L   88 (252)
                      |.....++.++...-..+..+ ...++|++|.|.++ .++.-.... +..+++|+.|+|+++ .|+.-.-.++ ..+++|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~L   82 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRL   82 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTS-CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTGG-GSCSCC
T ss_pred             cCCCCeEEecCCCCccCcccc-cCccccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCcccccc-cccccc
Confidence            344556666653111112222 35678999999765 455421112 256889999999985 4543221222 346677


Q ss_pred             hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444           89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  131 (252)
Q Consensus        89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it  131 (252)
                      +.|.++...+..-.     .++    -...+|++|+|++|++.
T Consensus        83 ~~L~Ls~N~l~~l~-----~~~----~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALESLS-----WKT----VQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCSCCC-----STT----TCSCCCCEEECCSSCCC
T ss_pred             cceeccCCCCcccC-----hhh----hccccccccccCCCccc
Confidence            77755443332110     111    13457999999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=5.4e-05  Score=59.66  Aligned_cols=89  Identities=9%  Similarity=-0.004  Sum_probs=49.5

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      +++++|+|+++.|+.-.- ....++++|++|+|+++...+.-...+ ...+++++.+.+..      ...+...... ..
T Consensus        29 ~~l~~L~Ls~n~i~~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~~-f~~l~~l~~l~~~~------~n~l~~~~~~-~~   99 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEK------ANNLLYINPE-AF   99 (242)
T ss_dssp             SCCSEEEEESCCCCEECT-TTTTTCTTCCEEEEESCTTCCEECSSS-EESCTTCCEEEEEC------CTTCCEECTT-SE
T ss_pred             CCCCEEECcCCcCCccCh-hHhhccchhhhhhhccccccceeeccc-cccccccccccccc------cccccccccc-cc
Confidence            589999999997763111 122678999999999974332100001 12345555553211      0011111111 11


Q ss_pred             hcCCCCcEEEecCcccCH
Q 025444          115 STMPKLKRLEMAYHVIST  132 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~  132 (252)
                      ..+++|++|.++++.++.
T Consensus       100 ~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             ECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccchhhhcc
Confidence            468899999999888654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.27  E-value=0.0025  Score=51.83  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444           35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  114 (252)
Q Consensus        35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~  114 (252)
                      .+|++|+|+++.++.  +.   ...++|++|+++++ .++     .+....++|+.|.+.       ++.++.     +.
T Consensus        38 ~~l~~LdLs~~~L~~--lp---~~~~~L~~L~Ls~N-~l~-----~lp~~~~~L~~L~l~-------~n~l~~-----l~   94 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LP---ELPPHLESLVASCN-SLT-----ELPELPQSLKSLLVD-------NNNLKA-----LS   94 (353)
T ss_dssp             HTCSEEECTTSCCSC--CC---SCCTTCSEEECCSS-CCS-----SCCCCCTTCCEEECC-------SSCCSC-----CC
T ss_pred             cCCCEEEeCCCCCCC--CC---CCCCCCCEEECCCC-CCc-----ccccchhhhhhhhhh-------hcccch-----hh
Confidence            479999999987763  22   23578999999874 554     223334566666433       222211     11


Q ss_pred             hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444          115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  155 (252)
Q Consensus       115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~  155 (252)
                      .-.++|++|++++|.++..  .. ...+++|+.|+++++..
T Consensus        95 ~lp~~L~~L~L~~n~l~~l--p~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          95 DLPPLLEYLGVSNNQLEKL--PE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCC
T ss_pred             hhccccccccccccccccc--cc-hhhhccceeeccccccc
Confidence            1125688888888886532  22 24678888888887643