Citrus Sinensis ID: 025462

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MIMQFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEcccEEHHHHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHHHcHHHHHHHcccEEEEEccccccccccccccEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccHHcccHccccccEEEccccccccEEEEEcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHccccEEcccccccccccccccEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MIMQFSTALrsdfarpasadskqisngvsahfrgqcnrgyivnlrlpfqqmdsrvansktycsarsfasktskqgtetssepkkdistvedpfdaptynipekpvtftegASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIqddgqvrvrigspitgygqesrnraarqripnrvytdefgiEHVEVNfyirgphgagkVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Flexible Loop (DISEMBL)
MIMQFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSarsfasktskqgtetssepkkdistvedpfdaptyniPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKAlkriqddgqvrVRIGspitgygqesrnraarqripnrvytdefGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Low Complexity Region (SEG)
MIMQFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSliilaglgvagaaayavFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Disordered region (IsUnstruct)
****************************SAHFRGQCNRGYIVNLRLPFQQM**********************************************YNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG**********RIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLML*********
Disordered Region (DISOPRED)
**************R***************HFRGQCN*G*********************YC***************************************EKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG*****************TDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY******
Disordered Region (DISEMBL)
MIMQFSTALRSD************SNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSAR*********************STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGY*********RQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Disordered Region (DISPRO)
MIMQFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSA*******************************PTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMQFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q1G3L1	269	Probable mitochondrial im	yes	no	0.785	0.736	0.752	4e-78
Q3SZV6	244	Mitochondrial import inne	yes	no	0.515	0.532	0.318	2e-13
Q5XKA2	232	Mitochondrial import inne	N/A	no	0.702	0.762	0.274	5e-13
Q9BVV7	248	Mitochondrial import inne	yes	no	0.519	0.528	0.296	4e-11
Q5U2X7	245	Mitochondrial import inne	yes	no	0.480	0.493	0.312	1e-10
Q4X1I8	237	Mitochondrial import inne	yes	no	0.519	0.552	0.294	1e-10
Q7S8S5	251	Mitochondrial import inne	N/A	no	0.448	0.450	0.308	1e-08
Q6CAQ9	269	Mitochondrial import inne	yes	no	0.507	0.475	0.285	4e-08
Q4HZ95	229	Mitochondrial import inne	yes	no	0.666	0.733	0.247	8e-08

>sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1

 Score =  291 bits (744), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 175/198 (88%)

Query: 52  DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 111
           ++R  N  +    RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct: 72  EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131

Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 171
           SYSL+ILAGLGVAGAA Y VFKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct: 132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191

Query: 172 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIV 231
           E+RNRAARQRIPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIV
Sbjct: 192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIV 251

Query: 232 EITSPYKAQLMLESYMPA 249
           EI +P  A+LMLESY+PA
Sbjct: 252 EILTPSPAKLMLESYLPA 269

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3SZV6|TIM21_BOVIN Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 171
           +Y +++L G+ + G   Y +F+EL       KI+ KAL++ +   +V    G P+ GYG+
Sbjct: 109 TYLIVVLIGISITGGLFYTIFRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGE 168

Query: 172 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 229
            +R R  RQ +    Y  + G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+
Sbjct: 169 VTR-RGRRQLVSFIEYKKD-GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYI 226

Query: 230 IVEITSPYKAQLMLE 244
            VE+  PY   +++E
Sbjct: 227 FVEL-EPYSRTIVVE 240

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q5XKA2|TIM21_XENLA Mitochondrial import inner membrane translocase subunit Tim21 OS=Xenopus laevis GN=timm21 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 61  YCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAG 120
           +C+ R  ++     G  +     K +S       AP  N   K        +Y +++L G
Sbjct: 51  FCAERPIST-----GCTSLQVKDKRVSVQSTSDGAPPQNASHKVKEAGRDFTYFIVVLIG 105

Query: 121 LGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQ 180
           +GV G   Y VF+EL       KI+ +AL++ +   +V    G PI GYG+ +R R  RQ
Sbjct: 106 IGVTGGLFYVVFEELFSSSSPSKIYGEALEKCRSHPEVIGAFGEPIKGYGETTR-RGRRQ 164

Query: 181 RIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYK 238
            + +  +  + GI+ + + FYI G  P   G V  E+ ++    +++F Y+ VEI +  +
Sbjct: 165 HVSHMEFVKD-GIKCMRLKFYIEGSEPRKQGTVHIEVKENPASGKYEFQYIFVEIDTYPR 223

Query: 239 AQLMLE 244
             +++E
Sbjct: 224 RTIIIE 229

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Xenopus laevis (taxid: 8355)

>sp|Q9BVV7|TIM21_HUMAN Mitochondrial import inner membrane translocase subunit Tim21 OS=Homo sapiens GN=TIMM21 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 171
           +Y +++L G+ + G   Y +FKEL       KI+ +AL++ +   +V    G  + GYG+
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGE 168

Query: 172 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 229
            +R R  RQ +    Y  + G++H  V FYI G  P   G V+ ++ ++    ++ F Y+
Sbjct: 169 VTR-RGRRQHVRFTEYVKD-GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYI 226

Query: 230 IVEITSPYKAQLMLE 244
            VEI S  +  +++E
Sbjct: 227 FVEIESYPRRTIIIE 241

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q5U2X7|TIM21_RAT Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 111 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 170
            +Y +++L G+ + G+  Y +FKEL        I+ KAL + +   +V    G P+ GYG
Sbjct: 107 VTYLIVVLFGVSITGSLLYTIFKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYG 166

Query: 171 QESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTY 228
           + SR R  RQ +    Y +  G++ + V FYI G  P   G V  E+ ++    Q+ F Y
Sbjct: 167 EMSR-RGRRQHVSFTEYANN-GLKRIRVKFYIEGSEPGKQGTVHAEVEENPRSGQFDFRY 224

Query: 229 LIVEI 233
           + V++
Sbjct: 225 IFVDV 229

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q4X1I8|TIM21_ASPFU Mitochondrial import inner membrane translocase subunit tim21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tim21 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 102 EKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKI-FNKALKRIQDDGQVRV 160
           EK    T+ +   L+I+AG  + G   Y ++ E +F P      F KA++RI+DD +   
Sbjct: 74  EKVARATQQSLNFLVIVAGAVLTGGVFYLLYTE-VFSPNSRTWQFEKAVQRIKDDPRCTD 132

Query: 161 RIGS--PITGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFK 217
            +G    I  YG+ + +R  R R I   ++ D  G EH++++F++ GP  +G V   M K
Sbjct: 133 LLGDRREIKAYGESTGSRWERNRPIATSMFKDRQGREHMKMHFHVEGPLNSGIVIVHMMK 192

Query: 218 DKEDKQWKFTYLIVEI 233
             +  +W++  L +++
Sbjct: 193 PLDKDEWEYLLLALDV 208

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q7S8S5|TIM21_NEUCR Mitochondrial import inner membrane translocase subunit tim-21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-21 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 10/123 (8%)

Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP-----I 166
           ++ L+IL G+ + G  AY +F ++     +   FN+A+ RI+ D +  V + SP     I
Sbjct: 92  NFGLVIL-GVVLTGGIAYLLFTDVFSPESKTAYFNRAVDRIRADPRC-VALLSPGDPKKI 149

Query: 167 TGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWK 225
             +G+E+ N+  R R I   V  D  G+EH++++F++ GP G+G V   +   K+   W+
Sbjct: 150 AAHGEETHNKWRRARPIAATVEKDNRGVEHLKMHFHVEGPRGSGVVGLHL--TKQPGHWE 207

Query: 226 FTY 228
             Y
Sbjct: 208 HEY 210

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM21 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 106 TFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP 165
            F + + Y  IILA LG+ G   Y +  EL+    + +IFN+A K I+ +  V   +G  
Sbjct: 102 VFFQLSWYLGIILAALGLFGLVWYYLIMELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQ 161

Query: 166 ITGYGQESRNRAARQRIP-NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK-- 222
           ++  G+    R  R + P ++   D++G EH+ +NFY+ G    G+   E+ ++ + K  
Sbjct: 162 LSSMGEGGGGRWGRNQPPVSKRGIDKYGREHIWMNFYVSGDINEGRAKLELVQNTDSKLS 221

Query: 223 --QWKFTYLIVEI 233
             ++ + Y +V+I
Sbjct: 222 SERFVYRYFVVDI 234

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4HZ95|TIM21_GIBZE Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=TIM21 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 18/186 (9%)

Query: 59  KTYCSARSFASKTSKQGT-ETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSL-- 115
           + + ++R +A++   QG   T   PK+   T   PF+   + +P K ++  E A+ +   
Sbjct: 23  RPFLASRYYATQ---QGLGATPRGPKRRAVT---PFNDNGH-VPWKQLSVAEKAARATQQ 75

Query: 116 -----IILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP--ITG 168
                +IL GL + G   Y ++ ++     +   FN+A+ +I+ D ++   +G    I  
Sbjct: 76  SFNFGMILVGLMLTGGVGYFLWTDVFSPDSKISNFNRAVDKIRSDPRIIDVMGDSKKIAA 135

Query: 169 YGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 227
           +G E+ N+  R R + +   TD  G +H+ ++FY+ GP   G     M K +    +++ 
Sbjct: 136 HGDETFNKWRRARPVASSETTDARGDQHIMMHFYVEGPKNNGVARLHMIKYRGHSDFEYK 195

Query: 228 YLIVEI 233
           YL V++
Sbjct: 196 YLFVDV 201

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
225427488	314	PREDICTED: TIM21-like protein, mitochond	0.845	0.678	0.751	1e-88
224067574	238	predicted protein [Populus trichocarpa]	0.896	0.949	0.761	2e-88
224136346	304	predicted protein [Populus trichocarpa]	0.952	0.789	0.704	4e-88
449446321	323	PREDICTED: uncharacterized protein LOC10	0.964	0.752	0.665	4e-79
449494116	323	PREDICTED: uncharacterized LOC101212713	0.746	0.582	0.824	5e-79
255541104	312	Import inner membrane translocase subuni	0.857	0.692	0.736	6e-79
125543152	355	hypothetical protein OsI_10791 [Oryza sa	0.658	0.467	0.795	3e-78
297721981	265	Os03g0253800 [Oryza sativa Japonica Grou	0.734	0.698	0.724	6e-78
108707219	209	expressed protein [Oryza sativa Japonica	0.734	0.885	0.724	2e-77
222617352	355	hypothetical protein OsJ_36633 [Oryza sa	0.658	0.467	0.783	3e-77

>gi|225427488|ref|XP_002263208.1| PREDICTED: TIM21-like protein, mitochondrial [Vitis vinifera] gi|296088479|emb|CBI37470.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/213 (75%), Positives = 177/213 (83%)

Query: 37  NRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAP 96
            R  IV    P++ +++   ++   C ARS AS  SK   E  SE +KDISTVEDPFDAP
Sbjct: 102 TRERIVGFCSPYRPIETHGKSTVVPCFARSCASTASKSPEEKQSETRKDISTVEDPFDAP 161

Query: 97  TYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDG 156
           TYNIPEKPVTF EGASYS+IIL GLG+A AA YAVFKELIFEPKEYKIF KALKR+Q+DG
Sbjct: 162 TYNIPEKPVTFAEGASYSVIILVGLGIAAAAGYAVFKELIFEPKEYKIFGKALKRVQEDG 221

Query: 157 QVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMF 216
           QVRVRIGSPITGYGQESRNRAARQRI NR++TDE G+EHVEVNFYIRGPHGAGKV+TEMF
Sbjct: 222 QVRVRIGSPITGYGQESRNRAARQRISNRIWTDEDGVEHVEVNFYIRGPHGAGKVYTEMF 281

Query: 217 KDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 249
           KDK DKQWKFTYLI EI SP  AQLMLESY+PA
Sbjct: 282 KDKVDKQWKFTYLIAEIKSPSPAQLMLESYVPA 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067574|ref|XP_002302508.1| predicted protein [Populus trichocarpa] gi|222844234|gb|EEE81781.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/226 (76%), Positives = 193/226 (85%)

Query: 27  GVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDI 86
           G+ A + GQ NR Y+V+LR  FQ M++   ++   C ARSFASK SK+ T   SE KKD+
Sbjct: 12  GIPAIYGGQPNREYLVSLRSSFQIMETHGESTINICFARSFASKASKKETHKQSETKKDV 71

Query: 87  STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFN 146
           STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGL VA AAAYAVFKELIFEPKEYKIFN
Sbjct: 72  STVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLAVAAAAAYAVFKELIFEPKEYKIFN 131

Query: 147 KALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPH 206
           KALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIPNR++TDE G+EHV++NFYIRGPH
Sbjct: 132 KALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIFTDEDGVEHVQINFYIRGPH 191

Query: 207 GAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA 252
           GAGKV  EMFKDK DKQWK+TYLIVE+  P ++QL+LESYMPA  A
Sbjct: 192 GAGKVSAEMFKDKVDKQWKYTYLIVEVMQPSRSQLILESYMPAPVA 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136346|ref|XP_002326838.1| predicted protein [Populus trichocarpa] gi|222835153|gb|EEE73588.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 202/244 (82%), Gaps = 4/244 (1%)

Query: 10  RSDFARPASADSKQISN----GVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSAR 65
           +SD+ R  ++++  ++     G+ A + G+ NR  +V+L  PFQ M++   ++   C AR
Sbjct: 57  KSDYVRHFASNANHLTKVRWLGIPAMYGGKSNRECLVSLGSPFQIMENHGGSTINICVAR 116

Query: 66  SFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAG 125
           SFASK SK+ T   SE +KD+STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGLGVA 
Sbjct: 117 SFASKASKKETRNQSETRKDLSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLGVAA 176

Query: 126 AAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNR 185
           AAAYAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIPNR
Sbjct: 177 AAAYAVFKELIFEPKEYKIFNKALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNR 236

Query: 186 VYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLES 245
           ++TDE G+EHV++NFYIRGPHGAGKV  EMFKDK DKQWK+TYLIVE   P ++QL+LES
Sbjct: 237 IFTDEDGVEHVQINFYIRGPHGAGKVSAEMFKDKVDKQWKYTYLIVETMQPSRSQLILES 296

Query: 246 YMPA 249
           YMPA
Sbjct: 297 YMPA 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446321|ref|XP_004140920.1| PREDICTED: uncharacterized protein LOC101212713 [Cucumis sativus]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/257 (66%), Positives = 195/257 (75%), Gaps = 14/257 (5%)

Query: 5   FSTALRSDFARPASADSKQIS-----------NGVSAHFRGQCNRGYIVNLRLPFQQMDS 53
           ++T++R   A   S  SKQ +            G+    R Q  R  +VN       + S
Sbjct: 69  YATSVRELLAPLKSGISKQSAVYVCDIPKAALGGMPVLSRWQDARASVVNFST--LGVTS 126

Query: 54  RVANS-KTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGAS 112
           R   S +  C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGAS
Sbjct: 127 RCDTSARGPCFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGAS 186

Query: 113 YSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQE 172
           YS IILAGLGVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE
Sbjct: 187 YSFIILAGLGVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQE 246

Query: 173 SRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVE 232
           +RNRAARQRIPNRV+TDE G+E VEVNFYIRGPHGAGKV+TEMFKD+ DKQWKFTYLIVE
Sbjct: 247 TRNRAARQRIPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVE 306

Query: 233 ITSPYKAQLMLESYMPA 249
           + SP  AQL+LESYMPA
Sbjct: 307 VKSPSPAQLILESYMPA 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494116|ref|XP_004159453.1| PREDICTED: uncharacterized LOC101212713 [Cucumis sativus]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 170/188 (90%)

Query: 62  CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 121
           C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGASYS IILAGL
Sbjct: 136 CFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGL 195

Query: 122 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 181
           GVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE+RNRAARQR
Sbjct: 196 GVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQR 255

Query: 182 IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQL 241
           IPNRV+TDE G+E VEVNFYIRGPHGAGKV+TEMFKD+ DKQWKFTYLIVE+ SP  AQL
Sbjct: 256 IPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVEVKSPSPAQL 315

Query: 242 MLESYMPA 249
           +LESYMPA
Sbjct: 316 ILESYMPA 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541104|ref|XP_002511616.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis] gi|223548796|gb|EEF50285.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 179/216 (82%)

Query: 34  GQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPF 93
           G  ++  I  L   FQ +     ++     ARSFASK SK+  E +SE +K++STVEDPF
Sbjct: 91  GNYDKQCIAGLGSQFQLVKLLGGSTTNSWFARSFASKASKKTGEATSETRKEVSTVEDPF 150

Query: 94  DAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQ 153
           DAPTYNIPEKPVTFTEGASYS+IILAGLGVA AA YAVFKELIFEPKEYKIFNKALKRIQ
Sbjct: 151 DAPTYNIPEKPVTFTEGASYSIIILAGLGVAAAAGYAVFKELIFEPKEYKIFNKALKRIQ 210

Query: 154 DDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFT 213
           DD QVRVRIGSPITGYGQESRNRAARQRIPN++YTDE G+EHV VNFYIRGPHGAGKV  
Sbjct: 211 DDAQVRVRIGSPITGYGQESRNRAARQRIPNKIYTDEDGVEHVLVNFYIRGPHGAGKVSA 270

Query: 214 EMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 249
           EMFKDK DK+WK+TYLIV+   P ++QL+LESYMPA
Sbjct: 271 EMFKDKVDKEWKYTYLIVQFLQPNQSQLILESYMPA 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125543152|gb|EAY89291.1| hypothetical protein OsI_10791 [Oryza sativa Indica Group]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 150/166 (90%)

Query: 84  KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
           KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A  A YAVFKELIFEPKEYK
Sbjct: 190 KDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAVFKELIFEPKEYK 249

Query: 144 IFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIR 203
           IF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN+V+TDE G+EHVEVNFYIR
Sbjct: 250 IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIR 309

Query: 204 GPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 249
           GPHGAGKV++EMFKDK D+ WKFTYLIVEI SP++AQLMLESY+PA
Sbjct: 310 GPHGAGKVYSEMFKDKNDRSWKFTYLIVEIVSPHRAQLMLESYVPA 355

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297721981|ref|NP_001173354.1| Os03g0253800 [Oryza sativa Japonica Group] gi|108707218|gb|ABF95013.1| expressed protein [Oryza sativa Japonica Group] gi|255674378|dbj|BAH92082.1| Os03g0253800 [Oryza sativa Japonica Group]

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 156/185 (84%)

Query: 65  RSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVA 124
           R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A
Sbjct: 81  RPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIA 140

Query: 125 GAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPN 184
             A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN
Sbjct: 141 AVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPN 200

Query: 185 RVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
           +V+TDE G+EHVEVNFYIRGPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLE
Sbjct: 201 KVWTDEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLE 260

Query: 245 SYMPA 249
           SY+PA
Sbjct: 261 SYVPA 265

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707219|gb|ABF95014.1| expressed protein [Oryza sativa Japonica Group]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 156/185 (84%)

Query: 65  RSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVA 124
           R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A
Sbjct: 25  RPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIA 84

Query: 125 GAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPN 184
             A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN
Sbjct: 85  AVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPN 144

Query: 185 RVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
           +V+TDE G+EHVEVNFYIRGPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLE
Sbjct: 145 KVWTDEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLE 204

Query: 245 SYMPA 249
           SY+PA
Sbjct: 205 SYVPA 209

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617352|gb|EEE53484.1| hypothetical protein OsJ_36633 [Oryza sativa Japonica Group]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 148/166 (89%)

Query: 84  KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
           KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A  A YAVFKELIFEPKEYK
Sbjct: 190 KDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAVFKELIFEPKEYK 249

Query: 144 IFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIR 203
           IF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN+V+TDE G+EHVEVNFYIR
Sbjct: 250 IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIR 309

Query: 204 GPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 249
           GPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLESY+PA
Sbjct: 310 GPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLESYVPA 355

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:1009023383	269	SD3 "AT4G00026" [Arabidopsis t	0.972	0.910	0.589	3.7e-71
UNIPROTKB|F1SNL5	243	LOC100622200 "Uncharacterized	0.436	0.452	0.330	5.7e-12
UNIPROTKB|F1MRI2	244	TIMM21 "Mitochondrial import i	0.436	0.450	0.330	2.3e-11
UNIPROTKB|Q3SZV6	244	TIMM21 "Mitochondrial import i	0.436	0.450	0.330	5.4e-11
UNIPROTKB|E2R117	244	TIMM21 "Uncharacterized protei	0.440	0.454	0.321	1.7e-10
ZFIN|ZDB-GENE-120709-89	238	si:dkey-118j18.1 "si:dkey-118j	0.440	0.466	0.313	3e-09
FB|FBgn0031708	236	CG7382 [Drosophila melanogaste	0.563	0.601	0.282	5.5e-09
WB|WBGene00018934	213	F56B3.11 [Caenorhabditis elega	0.373	0.441	0.312	5.8e-09
UNIPROTKB|E1BTY5	231	C2H18orf55 "Uncharacterized pr	0.440	0.480	0.304	6e-08
UNIPROTKB|Q9BVV7	248	TIMM21 "Mitochondrial import i	0.440	0.447	0.304	6.1e-08

TAIR|locus:1009023383 SD3 "AT4G00026" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 148/251 (58%), Positives = 181/251 (72%)

Query:     2 IMQFSTALRSDFARPASADSKQI-SNGVSAHFRGQCNRGYIVNLRLPFQQM--DSRVANS 58
             +  FS+A +     P S  SK++ SN   +      N G +   R P   +  ++R  N 
Sbjct:    22 LASFSSATQPCSGIPKS--SKRVFSNSFLSKDSTGAN-GLLFRFRNPQASICTEARPKNI 78

Query:    59 KTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSXXXX 118
              +    RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGASYS    
Sbjct:    79 NSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGASYSLVIL 138

Query:   119 XXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAA 178
                          FKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQE+RNRAA
Sbjct:   139 AGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQETRNRAA 198

Query:   179 RQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYK 238
             RQRIPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIVEI +P  
Sbjct:   199 RQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIVEILTPSP 258

Query:   239 AQLMLESYMPA 249
             A+LMLESY+PA
Sbjct:   259 AKLMLESYLPA 269

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0090351 "seedling development" evidence=IMP

UNIPROTKB|F1SNL5 LOC100622200 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   128 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGETTR-RGRRQHVSFIEYVKD- 185

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   186 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVIE 239

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F1MRI2 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQHVSFIEYKKD- 186

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   187 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVVE 240

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|Q3SZV6 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQLVSFIEYKKD- 186

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   187 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVVE 240

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0030150 "protein import into mitochondrial matrix" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R117 TIMM21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 37/115 (32%), Positives = 62/115 (53%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             FKEL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   128 FKELFSSSSPNKIYGKALEKCRSHPEVISIFGEPVKGYGEATR-RGRRQHVSFIEYVKD- 185

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++H+ V FYI G  P   G V  E+ ++ E  +++F Y+ VE+    +  +++E
Sbjct:   186 GLKHMRVKFYIEGSEPGKQGTVHLEVKENPESGEYEFRYIFVELEPHPRRTIIIE 240

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

ZFIN|ZDB-GENE-120709-89 si:dkey-118j18.1 "si:dkey-118j18.1" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 36/115 (31%), Positives = 64/115 (55%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             F+EL       KI+ KA +R +   +V    G PI G+G+ SR R  RQ++ +  Y  + 
Sbjct:   123 FQELFSSSSPSKIYGKAFERCRSHPEVIGAFGEPIKGFGETSR-RGRRQQVSHLEYMKD- 180

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++++ + FYI G  P   G V +E  ++ E  +++F Y+ VEI +  +  +++E
Sbjct:   181 GLKYMRLKFYIEGSEPGLRGTVHSESKENPETGKYEFRYIFVEIDTYPRRTIVIE 235

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

FB|FBgn0031708 CG7382 [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 41/145 (28%), Positives = 68/145 (46%)

Query:   100 IPEKPVTFTEGASYSXXXXXXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVR 159
             I EK    T+ ASY+                 F+EL        I+  AL+R+ +D +V+
Sbjct:    65 IGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFRELFSSESPNNIYADALRRVVEDPRVQ 124

Query:   160 VRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDK 219
               IG+PI G+G+ SR R  RQ + +  Y +  G  H+ + FY++G      V  E  +  
Sbjct:   125 DAIGAPIKGFGETSR-RGRRQHVAHSSY-ERNGKPHMRMQFYVQGLRNKATVQLESRRSD 182

Query:   220 EDKQWKFTYLIVEITSPYKAQLMLE 244
               K  ++ YL V++    +  ++LE
Sbjct:   183 SGKL-EYRYLFVQLDHYPRTTIILE 206

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

WB|WBGene00018934 F56B3.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 30/96 (31%), Positives = 53/96 (55%)

Query:   134 ELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGI 193
             E   +     IFNKAL  ++DDG+ +   G+ I G+G+E+ +R  R+ + +  Y  + G+
Sbjct:   104 EFFAQDSPQTIFNKALALVRDDGRCQEIFGASIAGFGEET-SRGRRRHVAHHKYEKD-GM 161

Query:   194 EHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 229
             + + V F+++G    G    EM +   D QW+F Y+
Sbjct:   162 QRIRVLFHVKGDRDEGIAQAEMEQRDGDWQWRFLYV 197

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BTY5 C2H18orf55 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 35/115 (30%), Positives = 61/115 (53%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             FKEL       KI+  AL++ +   +V    G PI GYG+ +R R  RQ + +  Y  + 
Sbjct:   116 FKELFSSSSPSKIYGDALEKCRSHPEVIGVFGEPIKGYGEATR-RGRRQFVSHIEYVKD- 173

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++H+ + FYI G  P   G V  E+ ++ E  ++   Y+ V++ S  +  +++E
Sbjct:   174 GLKHMRLKFYIEGSEPGKQGTVHVEVKENPERGRFDVRYIFVDVDSYPRRTIVVE 228

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|Q9BVV7 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 35/115 (30%), Positives = 60/115 (52%)

Query:   132 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 191
             FKEL       KI+ +AL++ +   +V    G  + GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTR-RGRRQHVRFTEYVKD- 186

Query:   192 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244
             G++H  V FYI G  P   G V+ ++ ++    ++ F Y+ VEI S  +  +++E
Sbjct:   187 GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIE 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1G3L1	TIM21_ARATH	No assigned EC number	0.7525	0.7857	0.7360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam08294	145	pfam08294, TIM21, TIM21	2e-24
pfam08695	117	pfam08695, Coa1, Cytochrome oxidase complex assemb	6e-04

>gnl|CDD|116878 pfam08294, TIM21, TIM21

 Score = 94.7 bits (236), Expect = 2e-24
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 107 FTEGASYSLIILAGLGVAGAAAYAVFKELIFEPK-EYKIFNKALKRIQDDGQVRVRIGSP 165
            T    Y +I+L G+GV G   Y +F EL F P  + +IFN+A++ ++++ +VR  +G  
Sbjct: 5   ATTFTFYFIIVLGGVGVTGLVIYLIFSEL-FSPSGDTQIFNRAVELVEENERVRDLLGER 63

Query: 166 ITGYGQESRN---RAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK 222
           I  YG+E+R       R  +  R Y D+ G EH+ + F++ GP   G V  E+ +  +  
Sbjct: 64  IKAYGEETRRGRWTRNRPIVSTREY-DKDGKEHIRMQFHVEGPRKKGTVHLELVESDDSG 122

Query: 223 QWKFTYLIVEI 233
           Q++F YL V++
Sbjct: 123 QYEFRYLYVDV 133

TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane. Length = 145

>gnl|CDD|219973 pfam08695, Coa1, Cytochrome oxidase complex assembly protein 1

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 28/126 (22%)

Query: 115 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPIT---GY-- 169
              +  +GV  A AY    E         I+   L +++   +VR  +G  I    G+  
Sbjct: 3   TFAVFAVGVGAALAYIFNYEK----TSSPIYRSTLYQLRRSPEVRELLGENIPFKSGWPW 58

Query: 170 --GQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 227
             G  +  +                   ++++F ++G  G G V+    ++ +   W   
Sbjct: 59  ISGSINTVQG-----------------RIDLSFPVKGSKGEGTVYLTASRESKRGPWHIH 101

Query: 228 YLIVEI 233
              + +
Sbjct: 102 EWSLTV 107

Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PF08294	145	TIM21: TIM21; InterPro: IPR013261 TIM21 interacts	100.0
KOG4836	215	consensus Uncharacterized conserved protein [Funct	100.0
PF08695	116	Coa1: Cytochrome oxidase complex assembly protein	99.63

>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane []

Probab=100.00  E-value=2.4e-50  Score=338.47  Aligned_cols=142  Identities=39%  Similarity=0.653  Sum_probs=78.3

Q ss_pred             CceeeeeeceeeehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCCCceeccccCc-cccccCc
Q 025462          103 KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR-NRAARQR  181 (252)
Q Consensus       103 Kv~rat~~s~~~~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGePIkayGe~s~-nrw~Rnr  181 (252)
                      |++|++++++|++|||+|+||+|+++|+|++|||++++|+.+||+|+++|++||+|+++||+||+|||++++ +||+|||
T Consensus         1 Kv~~~~~~~~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R   80 (145)
T PF08294_consen    1 KVKRATKQTSYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGEPIKAYGEETGRNRWRRNR   80 (145)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHH-HHHHHHT----EEEE-EEE-SS-EEE-
T ss_pred             ChheehcceeeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCCCeEEecCCCCCCcccccC
Confidence            899999999999999999999999999999999998899999999999999999999999999999999998 8999998


Q ss_pred             -ccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEeccC
Q 025462          182 -IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY  246 (252)
Q Consensus       182 -I~s~~y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd~  246 (252)
                       +.++.+.|+||++||+|+|||+||+|+|+||+||+|++.+++|||+||+||++|++  +|+|||+
T Consensus        81 ~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~e~~yL~vdv~g~~--ri~l~dn  144 (145)
T PF08294_consen   81 PIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEYEYRYLYVDVPGHK--RIYLEDN  144 (145)
T ss_dssp             ---EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-EEEEEEEE-TTS----EEEE--
T ss_pred             CccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCeeEEEEEEecCCCe--EEEEEcC
Confidence             66666679999999999999999999999999999997679999999999999976  8999984

; PDB: 2CIU_A.

>KOG4836 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.1e-40  Score=290.58  Aligned_cols=146  Identities=30%  Similarity=0.580  Sum_probs=138.3

Q ss_pred             CCCCceeeeeeceeeehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCCCceeccccCcccccc
Q 025462          100 IPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR  179 (252)
Q Consensus       100 i~eKv~rat~~s~~~~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGePIkayGe~s~nrw~R  179 (252)
                      .+.||++++.+++|+.+||+|+||+|+++|+|++|||++++|+.+||+||++|++||+|+.++|++||||||+++ |+||
T Consensus        68 ~~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~~~ifG~~iKgfGE~t~-rgRR  146 (215)
T KOG4836|consen   68 FGGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEVQGIFGESIKGFGEETR-RGRR  146 (215)
T ss_pred             CccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHHhhHhhhhhhhhhhhhc-Cccc
Confidence            456999999999999999999999999999999999998899999999999999999999999999999999998 6789


Q ss_pred             CcccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEeccCCCC
Q 025462          180 QRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA  249 (252)
Q Consensus       180 nrI~s~~y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd~~p~  249 (252)
                      +||+|..| |+||.+|++|+|||+|.+.+|+|+++++.+  +|+|+|+||+|||+++++..|++||+-|.
T Consensus       147 ~hVa~~~y-dk~G~~h~~m~Fhv~g~~~~g~v~~~~k~~--~g~~~~~flfVdv~~ypr~tii~~dnr~~  213 (215)
T KOG4836|consen  147 QHVAHHKY-DKDGMEHLRMQFHVEGSEPQGHVFARLKEV--DGDYEWDFLFVDVARYPRTTIILEDNRVR  213 (215)
T ss_pred             ceeeeeee-ecCCceEEEEEEEEEcCCcccchhhhhhcc--CCCCceeEEEEecCCCceeEEEccCCccc
Confidence            99999999 899999999999999999999999999876  78888888999999999999999998664

>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly

Probab=99.63  E-value=4.8e-15  Score=118.52  Aligned_cols=105  Identities=25%  Similarity=0.389  Sum_probs=79.4

Q ss_pred             HHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCC--Cceeccc-cCccccccCcccceEEecCCCceEEEE
Q 025462          122 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITGYGQ-ESRNRAARQRIPNRVYTDEFGIEHVEV  198 (252)
Q Consensus       122 gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGe--PIkayGe-~s~nrw~RnrI~s~~y~D~dG~eh~~m  198 (252)
                      ++++.++|.+..++    ..+.+|+.|++.+++||+|+++||+  ||+.... .+++          ....   ..++.+
T Consensus         9 ~~~~~~~~~~~~~~----~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~~~i~G~----------~~~~---~g~a~~   71 (116)
T PF08695_consen    9 GWGVFLFYAINSEK----KSSEYYKEALEQLRSNPEVVEALGENIPIKDGWPWISGS----------INTS---KGRADL   71 (116)
T ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCcccccce----------eecc---CcEEEE
Confidence            33345667766665    4567899999999999999999999  8886442 2321          2212   446889


Q ss_pred             EEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecc
Q 025462          199 NFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLES  245 (252)
Q Consensus       199 ~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd  245 (252)
                      +|+|+||+++|+||+++.++.+.+.|+|..|.|.++  ..++|.|.|
T Consensus        72 ~~pV~G~k~~G~v~~~a~r~~~~~~W~~~~~~v~~~--~g~~I~L~~  116 (116)
T PF08695_consen   72 SFPVKGPKGKGTVYVEATRSGGKDPWEILRLEVEID--DGQVIDLLD  116 (116)
T ss_pred             EEEEEcCCCcEEEEEEEEecCCCCceEEEEEEEEeC--CCCEEeCcC
Confidence            999999999999999999985555599999999999  345776643

It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2ciu_A	127	TIM21P, import inner membrane translocase subunit	3e-26

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae} Length = 127

 Score = 98.6 bits (245), Expect = 3e-26
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 143 KIFNKALKRIQDDGQVRVRI--------GSPITGYGQE-SRNRAARQR-IPNRVYTDEFG 192
           ++FN+A+  ++ +  +R  +           +  YG+  + ++  R R I +    D+ G
Sbjct: 9   QLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEG 68

Query: 193 IEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSP 236
             H  + F++        V  E  + K++ Q  F  + V++   
Sbjct: 69  RTHHYMRFHVESKKKIALVHLEAKESKQNYQPDFINMYVDVPGE 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
2ciu_A	127	TIM21P, import inner membrane translocase subunit	100.0

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-40  Score=268.91  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=101.5

Q ss_pred             ccCCcchHHHHHHHHHHhhchhHHHhh----C----CCceecccc-CccccccCc-ccceEEecCCCceEEEEEEEEEcC
Q 025462          136 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGP  205 (252)
Q Consensus       136 f~s~s~t~iyn~Al~rIk~DprV~~~L----G----ePIkayGe~-s~nrw~Rnr-I~s~~y~D~dG~eh~~m~F~VeGp  205 (252)
                      |++++++++||+||++|++||+|+++|    |    +||+|||++ +++||+||| |+|++++|+||+|||+|+|||+||
T Consensus         2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~   81 (127)
T 2ciu_A            2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK   81 (127)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred             cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence            356679999999999999999999999    6    899999998 889999999 999999999999999999999999


Q ss_pred             CCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEeccC
Q 025462          206 HGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY  246 (252)
Q Consensus       206 rg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd~  246 (252)
                      +++|+||+||+|+++.++|+|+||+|||+|++  +||||+.
T Consensus        82 ~~~G~V~le~~k~~~~~~~ef~Yl~vDV~g~~--Ri~Le~p  120 (127)
T 2ciu_A           82 KKIALVHLEAKESKQNYQPDFINMYVDVPGEK--RYYLIKP  120 (127)
T ss_dssp             SCEEEEEEEEECCSSCSSCEEEEEEEECTTSC--CEEEECC
T ss_pred             CCcEEEEEEEEecCCCCceEEEEEEEEeCCCc--eEEEECC
Confidence            99999999999988899999999999999976  8999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00