Citrus Sinensis ID: 025484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MDSPSQYIVTPESSMLESNDEPSGSHGESTPTLASPTSQAKRHIDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLPPSESIPSVSEPRVHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKHL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHcccEEEEEccccccccccEEEEEEEcccccEEEEEEccccccccccEEEEEcccccEEEEEEEEcccEEEEEcccEEEEEEEcccccccEEEEEEccccccccccccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccccccccccccccccccHccccccEEEEcccccccEEEEEEccccccEcccccccccccccccccccccccHHHcccccEEcccccccHHHHHHHHHHccccEEEEcccccccccccEEEEEEcccccEEEEEEEccccccccccEEEEEccccEEEEEEEEEcccEEEEEcccEEEEEEEcccccccEEEEEEccccccHHHcccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
mdspsqyivtpessmlesndepsgshgestptlasptsqakrhiddieestdyvvhdieesedyvvhdieesedyvvhdvlppsesipsvseprvhgfefidasgpasifipsrptkTEWAKLRAATKSGFALTGvatlgqvgphvgkadvgeseddYMFRIalpgvkrdddefsctvdptgkilikgvtttgeksVNKFSQVFEMqtqnltpagpfsitinlpgpvdpqqfsanfgfdgileGTVKKQKHL
Flexible Loop (DISEMBL)
mdspsqyiVTPESSMLESNDEPSGShgestptlasptsqakrhIDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLPPSESIPSVSEPRVHGFEFIdasgpasifipSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVgkadvgesedDYMFRIALpgvkrdddefsctvdptgkilikgvtttgekSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKHL
Low Complexity Region (SEG)
MDSPSQYIVTPESSMLESNDEPSGSHGESTPTLASPTSQAKRHIDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLppsesipsvsepRVHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKHL
Disordered region (IsUnstruct)
***************************************************DYVVHDIEESEDYVVHDIEESEDYVVHDVL*************VHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILE*********
Disordered Region (DISOPRED)
**************************************************************************************************************IPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ***
Disordered Region (DISEMBL)
*******************************************IDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLPPSESIPSVSEPRVHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKHL
Disordered Region (DISPRO)
**********************************************IEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLPPSESIP**********E**DASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSPSQYIVTPESSMLESNDEPSGSHGESTPTLASPTSQAKRHIDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLPPSESIPSVSEPRVHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
357441615	421	Heat shock protein-like protein [Medicag	0.722	0.432	0.568	2e-54
356574933	396	PREDICTED: uncharacterized protein LOC10	0.591	0.376	0.644	6e-52
255542586	409	conserved hypothetical protein [Ricinus	0.849	0.523	0.473	1e-50
356533594	399	PREDICTED: uncharacterized protein LOC10	0.591	0.373	0.617	3e-50
296088310	751	unnamed protein product [Vitis vinifera]	0.567	0.190	0.643	6e-50
225450997	235	PREDICTED: uncharacterized protein LOC10	0.567	0.608	0.643	1e-49
449518673	391	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.571	0.368	0.597	7e-46
449442839	391	PREDICTED: uncharacterized protein LOC10	0.571	0.368	0.597	7e-46
28558784	391	heat-shock protein-like protein [Cucumis	0.571	0.368	0.597	9e-46
224123224	395	predicted protein [Populus trichocarpa]	0.658	0.420	0.541	7e-44

>gi|357441615|ref|XP_003591085.1| Heat shock protein-like protein [Medicago truncatula] gi|355480133|gb|AES61336.1| Heat shock protein-like protein [Medicago truncatula]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 137/190 (72%), Gaps = 8/190 (4%)

Query: 69  IEESEDYV-VHDVLPPSESIPSVSEPRVHGFEFIDASG-------PASIFIPSRPTKTEW 120
           + ES+D+  +   LP + ++  +S    +G   +D  G       PA++F+PSRPTK EW
Sbjct: 230 VTESDDFSDLKYQLPHAHAVTPISCVPFNGGMGLDGEGDSVKVGAPAALFLPSRPTKKEW 289

Query: 121 AKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDP 180
           + + AAT SGFALTG A +GQ+GP +G  D+GE ED Y+FR++LPGVKRDD EFSC VD 
Sbjct: 290 SNIVAATNSGFALTGSAAMGQIGPIMGLVDIGECEDSYLFRMSLPGVKRDDKEFSCEVDT 349

Query: 181 TGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDG 240
            GK+ I+G+TTTGEK+V+  +QVFEMQTQNL PAG FSIT  LPGPVDP QFS NFG DG
Sbjct: 350 DGKVFIQGITTTGEKTVSMRTQVFEMQTQNLCPAGQFSITFQLPGPVDPHQFSGNFGTDG 409

Query: 241 ILEGTVKKQK 250
           ILEG V K+K
Sbjct: 410 ILEGIVVKRK 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574933|ref|XP_003555597.1| PREDICTED: uncharacterized protein LOC100785823 [Glycine max]

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 116/149 (77%)

Query: 102 DASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFR 161
           D  GPA +F+PSRP+K EW+ + AATK+GFALTG   +G +GP +G  D+GE ED Y+FR
Sbjct: 246 DKVGPAMLFLPSRPSKKEWSDIVAATKNGFALTGTVAMGGIGPTMGLVDIGECEDAYLFR 305

Query: 162 IALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITI 221
           ++LPGVKRD+ EFSC V   GK+LI GVTTTGE +V+++SQVFEMQTQNL P G FSI+ 
Sbjct: 306 LSLPGVKRDEREFSCEVGTDGKVLISGVTTTGENTVSRYSQVFEMQTQNLCPPGRFSISF 365

Query: 222 NLPGPVDPQQFSANFGFDGILEGTVKKQK 250
            LPGPVDP QFS NFG DGILEG V K K
Sbjct: 366 QLPGPVDPHQFSGNFGTDGILEGIVMKGK 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542586|ref|XP_002512356.1| conserved hypothetical protein [Ricinus communis] gi|223548317|gb|EEF49808.1| conserved hypothetical protein [Ricinus communis]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 146/230 (63%), Gaps = 16/230 (6%)

Query: 21  EPSGSHGESTPTLASPTSQAKRHIDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDV 80
           EP G    + P+ +S    AKR    ++            +ED  +H    S   V ++ 
Sbjct: 193 EPVGEFPPAKPSHSSRNRNAKRPASTLQ------------TEDQYIHVAPFSS--VRYNA 238

Query: 81  LPPSESIPSVSEPRVHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLG 140
            PP +   ++  P  +    ++   P  +F+PS P K E  ++ AA +SGFALTG A +G
Sbjct: 239 PPPVQRYTTL--PIRNNTRTVENGSPGMLFLPSCPKKEELTRIIAAGRSGFALTGSAAMG 296

Query: 141 QVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKF 200
           QVGP +G  D+GE ED YMFRI+LPGVKRD+++FSC V+  G +LIKGVTTTGE++V +F
Sbjct: 297 QVGPIIGLMDIGECEDSYMFRISLPGVKRDEEDFSCVVENDGMVLIKGVTTTGERTVYRF 356

Query: 201 SQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
           SQVFEMQ++NL P G FSI+  LPGPV+P+QFS NFG DGILEG V KQK
Sbjct: 357 SQVFEMQSKNLCPPGEFSISFQLPGPVNPRQFSGNFGTDGILEGIVMKQK 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533594|ref|XP_003535347.1| PREDICTED: uncharacterized protein LOC100775950 [Glycine max]

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 114/149 (76%)

Query: 102 DASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFR 161
           D  GPA +F+PSRP+K EW+ + AATK+GF LTG    G +GP +G  D+GE ED Y+FR
Sbjct: 249 DKVGPAMLFLPSRPSKKEWSDIVAATKNGFGLTGTVATGGIGPTMGLVDIGECEDAYLFR 308

Query: 162 IALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITI 221
           ++LPGVKR++ EFSC V   GK+LI GVTTTGE +V+++SQVFEMQT+NL P G FS++ 
Sbjct: 309 LSLPGVKRNEREFSCEVGTDGKVLISGVTTTGENTVSRYSQVFEMQTRNLCPPGQFSVSF 368

Query: 222 NLPGPVDPQQFSANFGFDGILEGTVKKQK 250
            LPGPVDP QFS NFG DGILEG V K K
Sbjct: 369 QLPGPVDPHQFSGNFGIDGILEGVVMKGK 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 112/143 (78%)

Query: 107 ASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPG 166
           A IF+PS PT  E   + AAT+ GFALTG A +GQ+GP +G  D+GE ED Y+FR++LPG
Sbjct: 605 AQIFLPSHPTMEELKNIVAATRGGFALTGSAAVGQIGPAIGHMDIGECEDSYLFRVSLPG 664

Query: 167 VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP 226
           VKRD+ EFSC V+  GK+LI+GVTTTGE++V   +QVFEMQTQNL P+G FSI+  LPGP
Sbjct: 665 VKRDEREFSCEVENDGKVLIRGVTTTGERTVYAGNQVFEMQTQNLCPSGHFSISFQLPGP 724

Query: 227 VDPQQFSANFGFDGILEGTVKKQ 249
           VDPQQFS NFG DGILEG V K+
Sbjct: 725 VDPQQFSGNFGIDGILEGIVMKR 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450997|ref|XP_002280890.1| PREDICTED: uncharacterized protein LOC100249373 [Vitis vinifera]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 112/143 (78%)

Query: 107 ASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPG 166
           A IF+PS PT  E   + AAT+ GFALTG A +GQ+GP +G  D+GE ED Y+FR++LPG
Sbjct: 89  AQIFLPSHPTMEELKNIVAATRGGFALTGSAAVGQIGPAIGHMDIGECEDSYLFRVSLPG 148

Query: 167 VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP 226
           VKRD+ EFSC V+  GK+LI+GVTTTGE++V   +QVFEMQTQNL P+G FSI+  LPGP
Sbjct: 149 VKRDEREFSCEVENDGKVLIRGVTTTGERTVYAGNQVFEMQTQNLCPSGHFSISFQLPGP 208

Query: 227 VDPQQFSANFGFDGILEGTVKKQ 249
           VDPQQFS NFG DGILEG V K+
Sbjct: 209 VDPQQFSGNFGIDGILEGIVMKR 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518673|ref|XP_004166361.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224805 [Cucumis sativus]

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 108/144 (75%)

Query: 105 GPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIAL 164
           GPA +F+P +P++ +WA L AAT +GFALTG A +G VGP +G  D+GE ED Y+FR++L
Sbjct: 244 GPAMLFLPGQPSEEDWANLVAATNTGFALTGTAAMGNVGPIIGSMDIGECEDSYLFRVSL 303

Query: 165 PGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLP 224
           PGVKRD   F+C V+  G+++IKGVTTTGE++V K SQVFEM T NL P G FS++  LP
Sbjct: 304 PGVKRDPCGFNCEVEKDGRVVIKGVTTTGERTVKKHSQVFEMVTHNLCPPGEFSLSFQLP 363

Query: 225 GPVDPQQFSANFGFDGILEGTVKK 248
           GPVDPQ F ANF   GILEG V K
Sbjct: 364 GPVDPQHFLANFDIAGILEGVVMK 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442839|ref|XP_004139188.1| PREDICTED: uncharacterized protein LOC101212060 [Cucumis sativus]

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 108/144 (75%)

Query: 105 GPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIAL 164
           GPA +F+P +P++ +WA L AAT +GFALTG A +G VGP +G  D+GE ED Y+FR++L
Sbjct: 244 GPAMLFLPGQPSEEDWANLVAATNTGFALTGTAAMGNVGPIIGSMDIGECEDSYLFRVSL 303

Query: 165 PGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLP 224
           PGVKRD   F+C V+  G+++IKGVTTTGE++V K SQVFEM T NL P G FS++  LP
Sbjct: 304 PGVKRDPCGFNCEVEKDGRVVIKGVTTTGERTVKKHSQVFEMVTHNLCPPGEFSLSFQLP 363

Query: 225 GPVDPQQFSANFGFDGILEGTVKK 248
           GPVDPQ F ANF   GILEG V K
Sbjct: 364 GPVDPQHFLANFDIAGILEGVVMK 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28558784|gb|AAO45755.1| heat-shock protein-like protein [Cucumis melo subsp. melo]

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 108/144 (75%)

Query: 105 GPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIAL 164
           GPA +F+P +P++ +WA L AAT SGFALTG A +G VGP +G  D+GE ED Y+FR++L
Sbjct: 244 GPAMLFLPRQPSEEDWANLVAATNSGFALTGTAAMGHVGPIIGSMDIGECEDSYLFRVSL 303

Query: 165 PGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLP 224
           PGVKRD   F+C V+  G+++I+GVTTTGE++V K SQVFEM T NL P G FS++  LP
Sbjct: 304 PGVKRDPCGFNCEVEKDGRVVIQGVTTTGERTVKKHSQVFEMVTHNLCPPGEFSLSFQLP 363

Query: 225 GPVDPQQFSANFGFDGILEGTVKK 248
           GPVDPQ F ANF   GILEG V K
Sbjct: 364 GPVDPQHFLANFDIAGILEGVVMK 387

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123224|ref|XP_002319025.1| predicted protein [Populus trichocarpa] gi|222857401|gb|EEE94948.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 81  LPPSESIPSVSEPRVHGFEFIDASGPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLG 140
           LPPS S  +    R  G        P  +F+PS   K EW  L AA K G ALTG A +G
Sbjct: 228 LPPSHSCTTSLLARDSGKS--AEESPRMVFLPSGAKKEEWNSLVAACKGGLALTGTAAMG 285

Query: 141 QVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKF 200
           QV   VG  D+GE ED Y+FR++LPGV++DD+EFSC ++  GK+LIKG+TTTGEK+V +F
Sbjct: 286 QVQQTVGLVDIGECEDAYLFRVSLPGVRQDDNEFSCKIENDGKVLIKGITTTGEKTVYRF 345

Query: 201 SQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
           SQ FEM ++NL   G FSI+  LPGPVDP  FS  FGFDGILE  V K
Sbjct: 346 SQKFEMLSRNLCSPGQFSISFQLPGPVDPSHFSGKFGFDGILEVIVMK 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2010995	206	AT1G54850 "AT1G54850" [Arabido	0.567	0.694	0.562	3.6e-41
TAIR|locus:2010945	349	AT1G54840 "AT1G54840" [Arabido	0.420	0.303	0.594	2.6e-31
TAIR|locus:2037380	463	AT1G20870 "AT1G20870" [Arabido	0.468	0.254	0.474	5.7e-28
TAIR|locus:2011696	143	AT1G76440 "AT1G76440" [Arabido	0.448	0.790	0.465	2.3e-23
POMBASE|SPBC3E7.02c	143	hsp16 "heat shock protein Hsp1	0.388	0.685	0.302	1.6e-05
UNIPROTKB|Q60A86	176	MCA0982 "Heat shock protein, H	0.448	0.642	0.310	0.00053

TAIR|locus:2010995 AT1G54850 "AT1G54850" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 81/144 (56%), Positives = 108/144 (75%)

Query:   105 GPASIFIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIAL 164
             GPA IF+PS  + +E++ L + TK+G ALTG A +G++G  +G  D+ ESED Y FR+AL
Sbjct:    59 GPAMIFLPS-DSSSEFSNLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVAL 117

Query:   165 PGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLP 224
             PGV RD+ EFSC ++P GKI+IKG TTTGE++V K +Q+F+M TQNL P G F+I   LP
Sbjct:   118 PGVSRDEKEFSCEIEPDGKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLP 177

Query:   225 GPVDPQQFSANFGFDGILEGTVKK 248
             GPV  ++F+ NFG DG+LEG VKK
Sbjct:   178 GPVSNEEFNGNFGSDGVLEGVVKK 201

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2010945 AT1G54840 "AT1G54840" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 63/106 (59%), Positives = 80/106 (75%)

Query:   143 GPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQ 202
             G  VG  D+GE +D Y+FR++LPGVKRD+  FSC V+  GK+L++GVTTTG K V ++S 
Sbjct:   237 GLMVGLMDIGECDDAYLFRVSLPGVKRDERYFSCEVEDNGKVLVRGVTTTGGKRVKRYSH 296

Query:   203 VFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
             VFEMQT++L P G FS++  LPGPV P +FS NFG DGILEG V K
Sbjct:   297 VFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMK 342

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2037380 AT1G20870 "AT1G20870" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.7e-28, P = 5.7e-28
 Identities = 56/118 (47%), Positives = 81/118 (68%)

Query:   134 TGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTG 193
             TG A+   +G  VG  D+G ++  Y F++ALPGV++D  EFSC ++  GK++++G TT G
Sbjct:   345 TGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKDYGEFSCEIESDGKVILEGSTTRG 404

Query:   194 EKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKH 251
             EK++ + S+VFEM  + L P GPF +  NLPGPVDP+ FS NF  DGI EG + + K+
Sbjct:   405 EKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFEGVIIRHKN 462

GO:0005575 "cellular_component" evidence=ND

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2011696 AT1G76440 "AT1G76440" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 54/116 (46%), Positives = 74/116 (63%)

Query:   134 TGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTG 193
             TG A LG VGP +G  D+G SE  Y+FR++LPG++++ D+  C +   G++ I+GV    
Sbjct:    22 TGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVIP-- 79

Query:   194 EKSV-NKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
             E ++ +    ++ MQ Q L P GPFSIT NLPG VDP+ FS NF  DGI E  V K
Sbjct:    80 EIAIPSDTGCLYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVVK 135

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC3E7.02c hsp16 "heat shock protein Hsp16" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 105 (42.0 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 33/109 (30%), Positives = 55/109 (50%)

Query:   140 GQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNK 199
             G++ P +   DV E +D     + LPGVK++D +     D +GK+ I G      K  N+
Sbjct:    33 GELSPSI---DVHEGKDTVSVDVELPGVKKEDVQVH--YD-SGKLTISGEVVNERK--NE 84

Query:   200 FSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
              ++  +  ++     G FS TI +P  +D  +  ANF  +G+L  T+ K
Sbjct:    85 STEGNQRWSERRF--GSFSRTITIPAKIDADRIEANFS-NGLLTVTLPK 130

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0031990 "mRNA export from nucleus in response to heat stress" evidence=IMP

GO:0034620 "cellular response to unfolded protein" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=NAS

UNIPROTKB|Q60A86 MCA0982 "Heat shock protein, Hsp20 family" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 105 (42.0 bits), Expect = 0.00053, P = 0.00053
 Identities = 40/129 (31%), Positives = 59/129 (45%)

Query:   120 WAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVD 179
             WA +R    S F  TG++     G  V K DV +  D+ + R  LPG+ +DD E + + D
Sbjct:    52 WALMRRPWPSLFR-TGLS-----GVRVPKVDVIDRADEVVVRAELPGITKDDLEVTLSED 105

Query:   180 PTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFD 239
                 +     ++  E    K  Q F  +       G FS ++ LP  VD  +  A+F  D
Sbjct:   106 ----MFTLQASSQSESKEEK-GQYFYREMSR----GEFSRSLRLPCAVDADKAKASFK-D 155

Query:   240 GILEGTVKK 248
             GILE  + K
Sbjct:   156 GILEVVIPK 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.132   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      252       240   0.00093  113 3  11 23  0.37    34
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.88u 0.08s 21.96t   Elapsed:  00:00:01
  Total cpu time:  21.88u 0.08s 21.96t   Elapsed:  00:00:01
  Start:  Fri May 10 10:44:25 2013   End:  Fri May 10 10:44:26 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	4e-10
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	1e-07
COG0071	146	COG0071, IbpA, Molecular chaperone (small heat sho	0.001

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQ 209
           DV E++D Y+    LPG K++D      V+  G + I G     E+    +        +
Sbjct: 1   DVYETDDAYVVEADLPGFKKED--IKVEVED-GVLTISGEREEEEEEEENY-------LR 50

Query: 210 NLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
                G FS +  LP  VDP +  A+   +G+L  T+ K
Sbjct: 51  RERSYGSFSRSFRLPEDVDPDKIKASLE-NGVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 18/96 (18%)

Query: 153 ESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLT 212
           +++D+ +  + LPGVK++D      V+    + I G     E+    +            
Sbjct: 3   QTDDEVVVTVDLPGVKKED--IKVEVED-NVLTISGKREEEEERERSY------------ 47

Query: 213 PAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
             G F  +  LP  VDP++  A+   +G+LE T+ K
Sbjct: 48  --GEFERSFELPEDVDPEKSKASLE-NGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
             D+ E++D+Y     LPGV ++D     TV+         +T  GE+   +  +  E  
Sbjct: 42  PVDIEETDDEYRITAELPGVDKED--IEITVEG------NTLTIRGERE-EEEEEEEEGY 92

Query: 208 TQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
            +     G F  T  LP  VDP+   A +  +G+L  T+ K +
Sbjct: 93  LRRERAYGEFERTFRLPEKVDPEVIKAKYK-NGLLTVTLPKAE 134

Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PRK11597	142	heat shock chaperone IbpB; Provisional	99.92
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.91
PRK10743	137	heat shock protein IbpA; Provisional	99.91
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.9
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.88
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.85
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.84
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.83
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.81
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.81
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.81
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.81
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.78
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.77
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.77
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.74
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.73
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.73
KOG0710	196	consensus Molecular chaperone (small heat-shock pr	99.61
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.54
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.43
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	99.32
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.28
KOG3591	173	consensus Alpha crystallins [Posttranslational mod	99.27
cd06463	84	p23_like Proteins containing this p23_like domain	98.99
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.75
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.15
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	97.99
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.96
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	97.88
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.73
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.52
cd06488	87	p23_melusin_like p23_like domain similar to the C-	97.5
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.49
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	96.48
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	96.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.85
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	95.51
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	95.16
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	94.02
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	91.47

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.92  E-value=8.7e-25  Score=183.37  Aligned_cols=115  Identities=19%  Similarity=0.319  Sum_probs=90.7

Q ss_pred             ccCCChHHHHHHHHHHHhccCccCcccccCCCCCCCceeeEEE-eCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEe
Q 025484          111 IPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGE-SEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGV  189 (252)
Q Consensus       111 ip~~p~~~Ef~~l~~~m~~~f~~~g~a~~~~~~P~~~~VDI~E-tdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~  189 (252)
                      -|+.+.|..|++++++|.+.+.       ..+.|   ++||+| ++++|+|.|+||||+|+||+|+  + ++|.|+|+|+
T Consensus         7 ~~~~~~~~~~d~l~~~~~~~~~-------~~~~P---~vdI~e~~~~~y~v~adlPGv~kedi~V~--v-~~~~LtI~ge   73 (142)
T PRK11597          7 SPLLRQWIGFDKLANALQNAGE-------SQSFP---PYNIEKSDDNHYRITLALAGFRQEDLDIQ--L-EGTRLTVKGT   73 (142)
T ss_pred             chhhcccccHHHHHHHhcccCc-------cCCCC---cEEEEEcCCCEEEEEEEeCCCCHHHeEEE--E-ECCEEEEEEE
Confidence            3445567788888877654321       12335   899998 5789999999999999999999  8 7999999976


Q ss_pred             ccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484          190 TTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ  249 (252)
Q Consensus       190 ~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~  249 (252)
                      ++     ....+..|++.+|+   +|+|+|+|.||.+||.+  +|+| +||||+|+|||.
T Consensus        74 ~~-----~~~~~~~~~~~Er~---~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~  122 (142)
T PRK11597         74 PE-----QPEKEVKWLHQGLV---NQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRN  122 (142)
T ss_pred             Ec-----cccCCCcEEEEEEe---CcEEEEEEECCCCcccC--cCEE-cCCEEEEEEecc
Confidence            32     22233445556676   79999999999999998  6999 999999999996

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.1e-24  Score=177.52  Aligned_cols=97  Identities=29%  Similarity=0.504  Sum_probs=81.2

Q ss_pred             CCCCCceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEE
Q 025484          142 VGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITI  221 (252)
Q Consensus       142 ~~P~~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I  221 (252)
                      +.|   ++||+|++++|.|.++||||+|+||+|+  + +++.|+|+|++.. + ...+... +.+.+++   +|.|+|+|
T Consensus        39 ~~P---~vdi~e~~~~~~I~~elPG~~kedI~I~--~-~~~~l~I~g~~~~-~-~~~~~~~-~~~~e~~---~~~f~r~~  106 (146)
T COG0071          39 GTP---PVDIEETDDEYRITAELPGVDKEDIEIT--V-EGNTLTIRGEREE-E-EEEEEEG-YLRRERA---YGEFERTF  106 (146)
T ss_pred             CCC---cEEEEEcCCEEEEEEEcCCCChHHeEEE--E-ECCEEEEEEEecc-c-ccccCCc-eEEEEEE---eeeEEEEE
Confidence            456   8999999999999999999999999999  7 7999999987541 1 1122334 4444555   69999999


Q ss_pred             ECCCCcccCccEEEccCCcEEEEEEecccC
Q 025484          222 NLPGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       222 ~LP~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +||..|+++.++|+| +||||+|+|||.++
T Consensus       107 ~Lp~~v~~~~~~A~~-~nGvL~I~lpk~~~  135 (146)
T COG0071         107 RLPEKVDPEVIKAKY-KNGLLTVTLPKAEP  135 (146)
T ss_pred             ECcccccccceeeEe-eCcEEEEEEecccc
Confidence            999999999999999 99999999999764

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.91  E-value=4.4e-24  Score=177.80  Aligned_cols=110  Identities=17%  Similarity=0.279  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhccCccCcccccCCCCCCCceeeEEE-eCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCcee
Q 025484          118 TEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGE-SEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKS  196 (252)
Q Consensus       118 ~Ef~~l~~~m~~~f~~~g~a~~~~~~P~~~~VDI~E-tdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk  196 (252)
                      .+|+++++.|.+.+..    ..+.+ |   ++||++ ++++|+|.|+||||+|+||+|+  + ++|.|+|+|+.+     
T Consensus        14 ~~~d~lf~~~~~~~~~----~~~~~-p---~~di~ee~~~~~~v~aelPGv~kedi~V~--v-~~~~LtI~ge~~-----   77 (137)
T PRK10743         14 IGFDRLFNLLENNQSQ----SNGGY-P---PYNVELVDENHYRIAIAVAGFAESELEIT--A-QDNLLVVKGAHA-----   77 (137)
T ss_pred             cCHHHHhhhhhhhhhc----ccCCC-C---cEEEEEcCCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEC-----
Confidence            4566666655443321    11222 5   799994 8999999999999999999999  7 789999997642     


Q ss_pred             eccCCceEEEEEeecCCCccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484          197 VNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ  249 (252)
Q Consensus       197 ~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~  249 (252)
                      ....+..+++.+|+   +|+|+|+|.||.+||.++  |+| +||||+|+|||.
T Consensus        78 ~~~~~~~~~~~Er~---~g~F~R~~~LP~~Vd~~~--A~~-~dGVL~I~lPK~  124 (137)
T PRK10743         78 DEQKERTYLYQGIA---ERNFERKFQLAENIHVRG--ANL-VNGLLYIDLERV  124 (137)
T ss_pred             ccccCCcEEEEEEE---CCEEEEEEECCCCcccCc--CEE-eCCEEEEEEeCC
Confidence            22233345555677   799999999999999994  999 999999999996

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.90  E-value=1.8e-23  Score=160.81  Aligned_cols=92  Identities=26%  Similarity=0.410  Sum_probs=76.8

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ++||+|++++|+|.++||||+|+||+|+  ++.++.|+|+|+++. +  ....+..++..+|.   +|+|.|+|+||.+|
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~--v~~~~~L~I~g~~~~-~--~~~~~~~~~~~e~~---~g~f~r~i~LP~~v   72 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVE--VEDGRVLRISGERKK-E--EEKKGDDWHRVERS---SGRFVRRFRLPENA   72 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEE--EeCCCEEEEEEEecc-c--ccccCCCEEEEEEe---ccEEEEEEECCCCC
Confidence            4899999999999999999999999999  723458999986431 1  11223445666676   79999999999999


Q ss_pred             ccCccEEEccCCcEEEEEEec
Q 025484          228 DPQQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK  248 (252)
                      |.++|+|+| +||||+|+|||
T Consensus        73 ~~~~i~A~~-~nGvL~I~lPK   92 (92)
T cd06472          73 DADEVKAFL-ENGVLTVTVPK   92 (92)
T ss_pred             CHHHCEEEE-ECCEEEEEecC
Confidence            999999999 99999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.88  E-value=1.4e-22  Score=155.45  Aligned_cols=92  Identities=26%  Similarity=0.474  Sum_probs=76.7

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ++||+|++++|+|.++||||+|+||+|+  + .++.|+|+|+++... ........+++.+|.   +|.|+|+|.|| ++
T Consensus         2 ~~di~e~~~~~~i~~~lPGv~~edi~v~--~-~~~~L~I~g~~~~~~-~~~~~~~~~~~~e~~---~g~f~r~~~lp-~v   73 (93)
T cd06471           2 KTDIKETDDEYIVEADLPGFKKEDIKLD--Y-KDGYLTISAKRDESK-DEKDKKGNYIRRERY---YGSFSRSFYLP-NV   73 (93)
T ss_pred             ceeEEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEcccc-ccccccCCEEEEeee---ccEEEEEEECC-CC
Confidence            6999999999999999999999999999  7 689999998753211 111122345566676   79999999999 79


Q ss_pred             ccCccEEEccCCcEEEEEEec
Q 025484          228 DPQQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK  248 (252)
                      +.++++|+| +||||+|+|||
T Consensus        74 ~~~~i~A~~-~dGvL~I~lPK   93 (93)
T cd06471          74 DEEEIKAKY-ENGVLKITLPK   93 (93)
T ss_pred             CHHHCEEEE-ECCEEEEEEcC
Confidence            999999999 99999999998

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.85  E-value=5.1e-21  Score=147.49  Aligned_cols=88  Identities=18%  Similarity=0.341  Sum_probs=73.4

Q ss_pred             eeeEEEeC-CEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484          148 KADVGESE-DDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP  226 (252)
Q Consensus       148 ~VDI~Etd-d~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~  226 (252)
                      ++||+|++ ++|+|.++|||++|+||+|+  + .++.|+|+|+++..   ...+.. |.++++.   +|+|.|+|.||.+
T Consensus         2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~--~-~~~~L~I~g~~~~~---~~~~~~-~~~~e~~---~g~f~R~~~LP~~   71 (90)
T cd06470           2 PYNIEKTGENNYRITLAVAGFSEDDLEIE--V-ENNQLTVTGKKADE---ENEERE-YLHRGIA---KRAFERSFNLADH   71 (90)
T ss_pred             CeeeEEcCCCeEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEccc---ccCCCc-EEEEEEe---ceEEEEEEECCCC
Confidence            79999985 99999999999999999999  7 68999999875421   122334 4445566   7999999999999


Q ss_pred             cccCccEEEccCCcEEEEEEec
Q 025484          227 VDPQQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       227 VD~dkIkAsy~~nGVLtItLPK  248 (252)
                      ||.+  +|+| +||||+|+||+
T Consensus        72 vd~~--~A~~-~~GvL~I~l~~   90 (90)
T cd06470          72 VKVK--GAEL-ENGLLTIDLER   90 (90)
T ss_pred             ceEC--eeEE-eCCEEEEEEEC
Confidence            9875  8999 99999999986

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.84  E-value=8.4e-21  Score=146.15  Aligned_cols=83  Identities=19%  Similarity=0.289  Sum_probs=69.4

Q ss_pred             eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484          150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP  229 (252)
Q Consensus       150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~  229 (252)
                      +|+|++++|.|.++||||+++||+|+  + .+|.|+|+|+..  +.  .++.+ |.+        ..|+|+|.||.+||+
T Consensus         4 ~v~e~~~~~~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~--~~--~~~~~-~~~--------~ef~R~~~LP~~Vd~   67 (86)
T cd06497           4 EVRSDRDKFTIYLDVKHFSPEDLTVK--V-LDDYVEIHGKHS--ER--QDDHG-YIS--------REFHRRYRLPSNVDQ   67 (86)
T ss_pred             eEEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEc--ce--eCCCC-EEE--------EEEEEEEECCCCCCh
Confidence            69999999999999999999999999  7 789999998632  11  12222 221        259999999999999


Q ss_pred             CccEEEccCCcEEEEEEec
Q 025484          230 QQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       230 dkIkAsy~~nGVLtItLPK  248 (252)
                      ++|+|+|++||||+|++||
T Consensus        68 ~~i~A~~~~dGvL~I~~PK   86 (86)
T cd06497          68 SAITCSLSADGMLTFSGPK   86 (86)
T ss_pred             HHeEEEeCCCCEEEEEecC
Confidence            9999998569999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.83  E-value=4.3e-20  Score=142.67  Aligned_cols=90  Identities=29%  Similarity=0.578  Sum_probs=70.3

Q ss_pred             eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484          150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP  229 (252)
Q Consensus       150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~  229 (252)
                      ||+|++++|.|.++|||++++||+|+  + .++.|+|+|..     .....+..+...+++   +|.|.|+|.||.++|.
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~--~-~~~~L~I~g~~-----~~~~~~~~~~~~~~~---~~~f~r~~~lP~~vd~   69 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIK--V-DDNKLVISGKR-----KEEEEDDRYYRSERR---YGSFERSIRLPEDVDP   69 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEE--E-ETTEEEEEEEE-----EGEECTTCEEEE-S----SEEEEEEEE-STTB-G
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEE--E-ecCccceecee-----eeeeeeeeeeecccc---cceEEEEEcCCCcCCc
Confidence            89999999999999999999999999  7 68999999763     212223333444455   7999999999999999


Q ss_pred             CccEEEccCCcEEEEEEecccC
Q 025484          230 QQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       230 dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ++++|+| +||+|+|++||.+.
T Consensus        70 ~~i~a~~-~~GvL~I~~pk~~~   90 (102)
T PF00011_consen   70 DKIKASY-ENGVLTITIPKKEE   90 (102)
T ss_dssp             GG-EEEE-TTSEEEEEEEBSSS
T ss_pred             ceEEEEe-cCCEEEEEEEcccc
Confidence            9999999 99999999999764

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.81  E-value=8.3e-20  Score=140.63  Aligned_cols=83  Identities=18%  Similarity=0.306  Sum_probs=69.8

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ..||+|++++|.|.++|||++|++|+|+  + .+|.|+|+|++.   .+ ....+ +.        .++|+|+|+||.+|
T Consensus         2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~--v-~~~~L~I~g~~~---~~-~~~~~-~~--------~~~f~R~f~LP~~v   65 (86)
T cd06475           2 MSEIRQTADRWKVSLDVNHFAPEELVVK--T-KDGVVEITGKHE---EK-QDEHG-FV--------SRCFTRKYTLPPGV   65 (86)
T ss_pred             cceEEEcCCeEEEEEECCCCCHHHEEEE--E-ECCEEEEEEEEC---cC-cCCCC-EE--------EEEEEEEEECCCCC
Confidence            4689999999999999999999999999  7 689999998642   11 11222 11        14799999999999


Q ss_pred             ccCccEEEccC-CcEEEEEEe
Q 025484          228 DPQQFSANFGF-DGILEGTVK  247 (252)
Q Consensus       228 D~dkIkAsy~~-nGVLtItLP  247 (252)
                      |+++|+|+| + ||||+|++|
T Consensus        66 d~~~v~A~~-~~dGvL~I~lP   85 (86)
T cd06475          66 DPTAVTSSL-SPDGILTVEAP   85 (86)
T ss_pred             CHHHcEEEE-CCCCeEEEEec
Confidence            999999999 7 999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.81  E-value=4.1e-20  Score=141.63  Aligned_cols=80  Identities=23%  Similarity=0.355  Sum_probs=69.0

Q ss_pred             eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484          150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP  229 (252)
Q Consensus       150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~  229 (252)
                      ||.|++++|.|.++|||++|+||+|+  + .+|.|+|+|+     ++.. .+.       .   +|+|.|+|.||.+||+
T Consensus         2 ~v~e~~~~~~v~~dlpG~~pedi~V~--v-~~~~L~I~ge-----r~~~-~~~-------~---~g~F~R~~~LP~~vd~   62 (81)
T cd06479           2 NVKTLGDTYQFAVDVSDFSPEDIIVT--T-SNNQIEVHAE-----KLAS-DGT-------V---MNTFTHKCQLPEDVDP   62 (81)
T ss_pred             CccCcCCeEEEEEECCCCCHHHeEEE--E-ECCEEEEEEE-----Eecc-CCC-------E---EEEEEEEEECCCCcCH
Confidence            78999999999999999999999999  7 7899999965     3222 111       2   4899999999999999


Q ss_pred             CccEEEccCCcEEEEEEec
Q 025484          230 QQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       230 dkIkAsy~~nGVLtItLPK  248 (252)
                      ++|+|+|.+||||+|+++|
T Consensus        63 e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479          63 TSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             HHeEEEecCCCEEEEEecC
Confidence            9999994389999999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.81  E-value=9.1e-20  Score=139.99  Aligned_cols=82  Identities=17%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      +.+++++|.|.++||||+|+||+|+  + .+|.|+|+|+..  + +. +..+++    +     +.|+|+|.||.+||++
T Consensus         2 ~~~~~~~~~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~--~-~~-~~~~~~----~-----~eF~R~~~LP~~vd~~   65 (84)
T cd06498           2 MRLEKDKFSVNLDVKHFSPEELKVK--V-LGDFIEIHGKHE--E-RQ-DEHGFI----S-----REFQRKYRIPADVDPL   65 (84)
T ss_pred             eEeCCceEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEc--c-ee-CCCCEE----E-----EEEEEEEECCCCCChH
Confidence            5678999999999999999999999  7 789999998632  1 11 222222    1     3699999999999999


Q ss_pred             ccEEEccC-CcEEEEEEecc
Q 025484          231 QFSANFGF-DGILEGTVKKQ  249 (252)
Q Consensus       231 kIkAsy~~-nGVLtItLPK~  249 (252)
                      +|+|+| + ||||+|++||.
T Consensus        66 ~i~A~~-~~dGvL~I~lPk~   84 (84)
T cd06498          66 TITSSL-SPDGVLTVCGPRK   84 (84)
T ss_pred             HcEEEe-CCCCEEEEEEeCC
Confidence            999999 7 99999999994

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.81  E-value=1.2e-19  Score=138.61  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=67.8

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      |.+++++|.|.++|||++|+||+|+  + .+|.|+|+|+..  + + .++.+ +.+        ..|+|+|.||.+||++
T Consensus         2 ~~~~~~~~~v~~dlpG~~~edI~V~--v-~~~~L~I~g~~~--~-~-~~~~~-~~~--------~ef~R~~~LP~~vd~~   65 (83)
T cd06478           2 VRLDKDRFSVNLDVKHFSPEELSVK--V-LGDFVEIHGKHE--E-R-QDEHG-FIS--------REFHRRYRLPPGVDPA   65 (83)
T ss_pred             eeecCceEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEc--e-E-cCCCC-EEE--------EEEEEEEECCCCcChH
Confidence            6789999999999999999999999  7 689999998632  1 1 12223 221        2599999999999999


Q ss_pred             ccEEEccCCcEEEEEEec
Q 025484          231 QFSANFGFDGILEGTVKK  248 (252)
Q Consensus       231 kIkAsy~~nGVLtItLPK  248 (252)
                      +|+|+|++||||+|++||
T Consensus        66 ~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478          66 AITSSLSADGVLTISGPR   83 (83)
T ss_pred             HeEEEECCCCEEEEEecC
Confidence            999999349999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.78  E-value=1.6e-18  Score=128.19  Aligned_cols=88  Identities=32%  Similarity=0.527  Sum_probs=72.1

Q ss_pred             eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484          150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP  229 (252)
Q Consensus       150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~  229 (252)
                      |++|++++|.|.++|||+++++|+|+  + .++.|.|+|++....   .... .+...++.   +|.|.|+|.||..+|+
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~--v-~~~~l~I~g~~~~~~---~~~~-~~~~~~~~---~~~f~r~~~LP~~vd~   70 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVE--V-EDGVLTISGEREEEE---EEEE-NYLRRERS---YGSFSRSFRLPEDVDP   70 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEeccc---ccCC-cEEEEEEe---CcEEEEEEECCCCcCH
Confidence            58899999999999999999999999  7 689999997643111   1111 22333343   6999999999999999


Q ss_pred             CccEEEccCCcEEEEEEec
Q 025484          230 QQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       230 dkIkAsy~~nGVLtItLPK  248 (252)
                      ++++|+| +||+|+|++||
T Consensus        71 ~~i~a~~-~~G~L~I~~pk   88 (88)
T cd06464          71 DKIKASL-ENGVLTITLPK   88 (88)
T ss_pred             HHcEEEE-eCCEEEEEEcC
Confidence            9999999 89999999998

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.77  E-value=1e-18  Score=134.10  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             EEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCc
Q 025484          152 GESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQ  231 (252)
Q Consensus       152 ~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dk  231 (252)
                      .-++++|.|.++|||++++||+|+  + .+|.|+|+|+..  + + .+..+ +.        .+.|+|+|.||.+||+++
T Consensus         3 ~~~~d~y~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~--~-~-~~~~~-~~--------~~eF~R~~~LP~~vd~~~   66 (83)
T cd06476           3 ESEDDKYQVFLDVCHFTPDEITVR--T-VDNLLEVSARHP--Q-R-MDRHG-FV--------SREFTRTYILPMDVDPLL   66 (83)
T ss_pred             eccCCeEEEEEEcCCCCHHHeEEE--E-ECCEEEEEEEEc--c-e-ecCCC-EE--------EEEEEEEEECCCCCChhh
Confidence            346899999999999999999999  7 789999998632  1 1 11222 21        257999999999999999


Q ss_pred             cEEEccC-CcEEEEEEec
Q 025484          232 FSANFGF-DGILEGTVKK  248 (252)
Q Consensus       232 IkAsy~~-nGVLtItLPK  248 (252)
                      |+|+| . ||||+|++||
T Consensus        67 v~A~~-~~dGvL~I~~Pr   83 (83)
T cd06476          67 VRASL-SHDGILCIQAPR   83 (83)
T ss_pred             EEEEe-cCCCEEEEEecC
Confidence            99999 6 9999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.77  E-value=1.3e-18  Score=134.26  Aligned_cols=84  Identities=17%  Similarity=0.317  Sum_probs=68.0

Q ss_pred             EeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCcc
Q 025484          153 ESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQF  232 (252)
Q Consensus       153 Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkI  232 (252)
                      +.+++|.|.++|||++|+||+|+  + .+|.|+|+|+...   ........+.   ++   +|+|+|+|.||.+||.++|
T Consensus         4 ~~~d~~~v~~dlpG~~~edI~V~--v-~~~~L~I~g~~~~---~~~~~~~~~~---~~---~~~F~R~~~LP~~Vd~~~i   71 (87)
T cd06481           4 DGKEGFSLKLDVRGFSPEDLSVR--V-DGRKLVVTGKREK---KNEDEKGSFS---YE---YQEFVREAQLPEHVDPEAV   71 (87)
T ss_pred             CccceEEEEEECCCCChHHeEEE--E-ECCEEEEEEEEee---ecccCCCcEE---EE---eeEEEEEEECCCCcChHHe
Confidence            46789999999999999999999  7 7999999986421   1111222222   22   4899999999999999999


Q ss_pred             EEEccCCcEEEEEEec
Q 025484          233 SANFGFDGILEGTVKK  248 (252)
Q Consensus       233 kAsy~~nGVLtItLPK  248 (252)
                      +|+|.+||||+|++|+
T Consensus        72 ~A~~~~dGvL~I~~P~   87 (87)
T cd06481          72 TCSLSPSGHLHIRAPR   87 (87)
T ss_pred             EEEeCCCceEEEEcCC
Confidence            9999779999999996

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.74  E-value=9.1e-18  Score=129.31  Aligned_cols=80  Identities=24%  Similarity=0.302  Sum_probs=65.0

Q ss_pred             EEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCc
Q 025484          152 GESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQ  231 (252)
Q Consensus       152 ~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dk  231 (252)
                      -|++++|.|.++|||++|+||+|+  + .+|.|+|+|++..  .  ....+++         .++|+|+|.||.+|+.++
T Consensus         3 ~e~~~~~~v~~dlpG~~~edI~V~--v-~~~~L~I~ge~~~--~--~~~~~~~---------~r~F~R~~~LP~~Vd~~~   66 (83)
T cd06477           3 EEGKPMFQILLDVVQFRPEDIIIQ--V-FEGWLLIKGQHGV--R--MDEHGFI---------SRSFTRQYQLPDGVEHKD   66 (83)
T ss_pred             ccCCceEEEEEEcCCCCHHHeEEE--E-ECCEEEEEEEEcc--c--cCCCCEE---------EEEEEEEEECCCCcchhe
Confidence            478999999999999999999999  7 7999999976421  1  1122221         147999999999999999


Q ss_pred             cEEEccCCcEEEEEEe
Q 025484          232 FSANFGFDGILEGTVK  247 (252)
Q Consensus       232 IkAsy~~nGVLtItLP  247 (252)
                      |+|+|.+||||+|+.|
T Consensus        67 v~A~~~~dGvL~I~~~   82 (83)
T cd06477          67 LSAMLCHDGILVVETK   82 (83)
T ss_pred             EEEEEcCCCEEEEEec
Confidence            9999636999999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.73  E-value=6.8e-18  Score=131.13  Aligned_cols=81  Identities=12%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             eCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccE
Q 025484          154 SEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFS  233 (252)
Q Consensus       154 tdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIk  233 (252)
                      .+++|+|.++|||++|+||+|+  | .+|.|+|+|++.. +  ....+    ..+|+   +|+|.|+|.||.+||.++|+
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~--v-~~~~L~I~ger~~-~--~e~~~----~~er~---~g~F~R~f~LP~~Vd~d~i~   72 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVK--V-KDGKVQVSAEREN-R--YDCLG----SKKYS---YMNICKEFSLPPGVDEKDVT   72 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEec-c--cccCC----ccEEE---EEEEEEEEECCCCcChHHcE
Confidence            5789999999999999999999  7 7999999976431 1  11111    12445   69999999999999999999


Q ss_pred             EEccCCcEEEEEEe
Q 025484          234 ANFGFDGILEGTVK  247 (252)
Q Consensus       234 Asy~~nGVLtItLP  247 (252)
                      |+|.++|||+|.-|
T Consensus        73 A~~~~~~~l~i~~~   86 (87)
T cd06482          73 YSYGLGSVVKIETP   86 (87)
T ss_pred             EEEcCCCEEEEeeC
Confidence            99943449999866

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.73  E-value=1.1e-17  Score=126.65  Aligned_cols=77  Identities=18%  Similarity=0.356  Sum_probs=64.1

Q ss_pred             CCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccEE
Q 025484          155 EDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSA  234 (252)
Q Consensus       155 dd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIkA  234 (252)
                      .++|.|.++|||++|+||+|+  + .++.|+|+|++.     .......     +.   +|+|.|+|.||.+||+++++|
T Consensus         6 ~~~~~v~~dlpG~~~edI~v~--v-~~~~L~I~g~~~-----~~~~~~~-----~~---~~~f~r~~~LP~~vd~~~i~A   69 (83)
T cd06526           6 DEKFQVTLDVKGFKPEELKVK--V-SDNKLVVEGKHE-----EREDEHG-----YV---SREFTRRYQLPEGVDPDSVTS   69 (83)
T ss_pred             CeeEEEEEECCCCCHHHcEEE--E-ECCEEEEEEEEe-----eeccCCC-----EE---EEEEEEEEECCCCCChHHeEE
Confidence            369999999999999999999  7 689999997632     2211111     11   378999999999999999999


Q ss_pred             EccCC-cEEEEEEec
Q 025484          235 NFGFD-GILEGTVKK  248 (252)
Q Consensus       235 sy~~n-GVLtItLPK  248 (252)
                      +| .| |||+|++||
T Consensus        70 ~~-~~~GvL~I~~Pk   83 (83)
T cd06526          70 SL-SSDGVLTIEAPK   83 (83)
T ss_pred             Ee-CCCcEEEEEecC
Confidence            99 77 999999998

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.7e-16  Score=134.45  Aligned_cols=97  Identities=27%  Similarity=0.406  Sum_probs=79.8

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ++||.|+.++|.+.++|||+.+++|+|+  +.++++|+|+|+... +.........+++.++.   .|.|.|+|.||.++
T Consensus        86 ~~~v~e~~~~~~~~~~~Pgl~ke~iKv~--~~~~~~l~isGe~~~-e~e~~~~~~~~~~~E~~---~g~F~r~~~lPenv  159 (196)
T KOG0710|consen   86 PWDVKESPDAHEFKVDLPGLKKEDIKVE--VEDEKVLTISGERKK-EEEESGSGKKWKRVERK---LGKFKRRFELPENV  159 (196)
T ss_pred             CcccccCCCceEEEeeCCCCCchhceEE--eccCcEEEEeccccc-ccccccCCccceeehhc---ccceEeeecCCccc
Confidence            7889999999999999999999999999  524558999976431 11111133445666676   79999999999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +.++|+|.| +||||+|++||..+
T Consensus       160 ~~d~ikA~~-~nGVL~VvvpK~~~  182 (196)
T KOG0710|consen  160 DVDEIKAEM-ENGVLTVVVPKLEP  182 (196)
T ss_pred             cHHHHHHHh-hCCeEEEEEecccc
Confidence            999999999 99999999999876

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.54  E-value=2e-14  Score=112.82  Aligned_cols=82  Identities=20%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      +..+++.|.|.+++.|++++||+|+  + .+|.|+|+|+..  + +. .+.+++         .++|.|+|.||..||++
T Consensus        10 ~~~~~~~f~v~ldv~gF~pEDL~Vk--v-~~~~L~V~Gkh~--~-~~-~e~g~~---------~r~F~R~~~LP~~Vd~~   73 (91)
T cd06480          10 PPNSSEPWKVCVNVHSFKPEELTVK--T-KDGFVEVSGKHE--E-QQ-KEGGIV---------SKNFTKKIQLPPEVDPV   73 (91)
T ss_pred             CCCCCCcEEEEEEeCCCCHHHcEEE--E-ECCEEEEEEEEC--c-cc-CCCCEE---------EEEEEEEEECCCCCCch
Confidence            3458899999999999999999999  7 799999998632  1 11 122221         14899999999999999


Q ss_pred             ccEEEccCCcEEEEEEec
Q 025484          231 QFSANFGFDGILEGTVKK  248 (252)
Q Consensus       231 kIkAsy~~nGVLtItLPK  248 (252)
                      +|+|++++||+|+|++|.
T Consensus        74 ~v~s~l~~dGvL~IeaP~   91 (91)
T cd06480          74 TVFASLSPEGLLIIEAPQ   91 (91)
T ss_pred             hEEEEeCCCCeEEEEcCC
Confidence            999999559999999883

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.43  E-value=6.7e-13  Score=93.77  Aligned_cols=80  Identities=30%  Similarity=0.495  Sum_probs=67.0

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      ++++++.|.|.+++||+.+++|+|.  + .++.|+|+|......     .      ....   .+.|.+.+.||..++++
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~--~-~~~~l~v~~~~~~~~-----~------~~~~---~~~~~~~~~L~~~i~~~   63 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVE--V-EDNVLTISGKREEEE-----E------RERS---YGEFERSFELPEDVDPE   63 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEcCCC-----c------ceEe---eeeEEEEEECCCCcCHH
Confidence            4688999999999999999999999  7 689999997632111     1      1111   46899999999999999


Q ss_pred             ccEEEccCCcEEEEEEec
Q 025484          231 QFSANFGFDGILEGTVKK  248 (252)
Q Consensus       231 kIkAsy~~nGVLtItLPK  248 (252)
                      +++|+| .+|+|+|+|||
T Consensus        64 ~~~~~~-~~~~l~i~l~K   80 (80)
T cd00298          64 KSKASL-ENGVLEITLPK   80 (80)
T ss_pred             HCEEEE-ECCEEEEEEcC
Confidence            999999 89999999998

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=99.32  E-value=8.7e-12  Score=108.53  Aligned_cols=76  Identities=30%  Similarity=0.510  Sum_probs=62.8

Q ss_pred             eeeEEEeCC-EEEEEEEeCCCCCCC-eEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          148 KADVGESED-DYMFRIALPGVKRDD-DEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etdd-~yvV~adLPGV~KED-I~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      .|++.+.++ .++|.|+||||++++ |+|.++. ..+.|+|+.                         .+.|.+++.||.
T Consensus        93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~-------------------------~~~~~krv~L~~  146 (177)
T PF05455_consen   93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRV-------------------------GEKYLKRVALPW  146 (177)
T ss_pred             eeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEec-------------------------CCceEeeEecCC
Confidence            789999888 699999999999999 9998332 356777762                         135779999998


Q ss_pred             CcccCccEEEccCCcEEEEEEecccC
Q 025484          226 PVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       226 ~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      . +++.++|+| +||||+|+|-|.+.
T Consensus       147 ~-~~e~~~~t~-nNgILEIri~~~~~  170 (177)
T PF05455_consen  147 P-DPEITSATF-NNGILEIRIRRTEE  170 (177)
T ss_pred             C-ccceeeEEE-eCceEEEEEeecCC
Confidence            7 689999999 99999999988764

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.28  E-value=2.4e-11  Score=89.53  Aligned_cols=71  Identities=21%  Similarity=0.347  Sum_probs=63.7

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      ++++++.+.|.+++||+++++++|+  + +++.|.|+|                          ..|.+.+.||..||++
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~--~-~~~~l~i~~--------------------------~~~~~~~~l~~~I~~e   51 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIF--C-SDLYLKVNF--------------------------PPYLFELDLAAPIDDE   51 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEE--E-ecCEEEEcC--------------------------CCEEEEEeCccccccc
Confidence            4688999999999999999999999  7 678888872                          1478999999999999


Q ss_pred             ccEEEccCCcEEEEEEecccC
Q 025484          231 QFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       231 kIkAsy~~nGVLtItLPK~e~  251 (252)
                      +++|++ .+|.|+|+|+|+++
T Consensus        52 ~~~~~~-~~~~l~i~L~K~~~   71 (78)
T cd06469          52 KSSAKI-GNGVLVFTLVKKEP   71 (78)
T ss_pred             ccEEEE-eCCEEEEEEEeCCC
Confidence            999999 99999999999864

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.5e-11  Score=105.14  Aligned_cols=90  Identities=17%  Similarity=0.306  Sum_probs=74.5

Q ss_pred             CceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          146 VGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       146 ~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      .+...+..+++.|.|.+|+-.+++++|+|.  + .++.|.|.|+   .+.+.++. ++.    .     ..|.|++.||.
T Consensus        62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk--~-~~~~l~V~gk---Heer~d~~-G~v----~-----R~F~R~y~LP~  125 (173)
T KOG3591|consen   62 SGASEIVNDKDKFEVNLDVHQFKPEELKVK--T-DDNTLEVEGK---HEEKEDEH-GYV----S-----RSFVRKYLLPE  125 (173)
T ss_pred             ccccccccCCCcEEEEEEcccCcccceEEE--e-CCCEEEEEee---eccccCCC-CeE----E-----EEEEEEecCCC
Confidence            346788999999999999999999999999  7 6889999976   22222222 221    1     37999999999


Q ss_pred             CcccCccEEEccCCcEEEEEEecccC
Q 025484          226 PVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       226 ~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +||+++|+++++.||+|+|+.||...
T Consensus       126 ~vdp~~V~S~LS~dGvLtI~ap~~~~  151 (173)
T KOG3591|consen  126 DVDPTSVTSTLSSDGVLTIEAPKPPP  151 (173)
T ss_pred             CCChhheEEeeCCCceEEEEccCCCC
Confidence            99999999999999999999999764

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.99  E-value=3.5e-09  Score=76.89  Aligned_cols=76  Identities=20%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      ++++++.+.|.+.+||+.+++++|.  + .++.|+|++..   .     .             .+.|.+.+.|+.+|+++
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~--~-~~~~l~i~~~~---~-----~-------------~~~~~~~~~L~~~I~~~   56 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVE--F-TPKSLTVSVKG---G-----G-------------GKEYLLEGELFGPIDPE   56 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEE--E-ecCEEEEEeeC---C-----C-------------CCceEEeeEccCccchh
Confidence            3578999999999999999999999  7 68899999641   1     0             24688999999999999


Q ss_pred             ccEEEccCCcEEEEEEecccC
Q 025484          231 QFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       231 kIkAsy~~nGVLtItLPK~e~  251 (252)
                      +.++++ .+|.|+|+|+|+++
T Consensus        57 ~s~~~~-~~~~l~i~L~K~~~   76 (84)
T cd06463          57 ESKWTV-EDRKIEITLKKKEP   76 (84)
T ss_pred             hcEEEE-eCCEEEEEEEECCC
Confidence            999999 89999999999875

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.75  E-value=3.9e-08  Score=73.02  Aligned_cols=77  Identities=18%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484          150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP  229 (252)
Q Consensus       150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~  229 (252)
                      |++++++.+.|.+.+||+.+++++|.  + .++.|.|++..  +      .             .+.|...+.|...|++
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~--~-~~~~l~i~~~~--~------~-------------~~~~~~~~~L~~~I~~   56 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVE--F-NEQSLSVSIIL--P------G-------------GSEYQLELDLFGPIDP   56 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEE--E-ecCEEEEEEEC--C------C-------------CCeEEEecccccccCc
Confidence            68899999999999999999999999  6 67899998531  0      0             1368888999999999


Q ss_pred             CccEEEccCCcEEEEEEecccC
Q 025484          230 QQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       230 dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +..++++ .+|.|+|+|.|.++
T Consensus        57 ~~s~~~~-~~~~vei~L~K~~~   77 (84)
T cd06466          57 EQSKVSV-LPTKVEITLKKAEP   77 (84)
T ss_pred             hhcEEEE-eCeEEEEEEEcCCC
Confidence            9999999 89999999999874

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.15  E-value=4.2e-05  Score=55.15  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             eeeEEEeCCEEEEEEEeCCC--CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          148 KADVGESEDDYMFRIALPGV--KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV--~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      ..+++++++.+.|.+.+++.  +++|++|.  + .++.|.|+....        ++             ..|.-.+.|..
T Consensus         2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~--~-~~~~l~v~~~~~--------~~-------------~~~~~~~~L~~   57 (79)
T PF04969_consen    2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVD--F-TDTSLSVSIKSG--------DG-------------KEYLLEGELFG   57 (79)
T ss_dssp             SEEEEEESSEEEEEEE-TTTTSSGGGEEEE--E-ETTEEEEEEEET--------TS-------------CEEEEEEEBSS
T ss_pred             CeEEEECCCEEEEEEEEcCCCCChHHeEEE--E-EeeEEEEEEEcc--------CC-------------ceEEEEEEEee
Confidence            58899999999999999665  49999999  7 688999985311        10             14677788999


Q ss_pred             CcccCccEEEccCCcEEEEEEec
Q 025484          226 PVDPQQFSANFGFDGILEGTVKK  248 (252)
Q Consensus       226 ~VD~dkIkAsy~~nGVLtItLPK  248 (252)
                      .|+++..+.++ .++.|+|+|.|
T Consensus        58 ~I~~~~s~~~~-~~~~i~i~L~K   79 (79)
T PF04969_consen   58 EIDPDESTWKV-KDNKIEITLKK   79 (79)
T ss_dssp             -BECCCEEEEE-ETTEEEEEEEB
T ss_pred             eEcchhcEEEE-ECCEEEEEEEC
Confidence            99999999999 89999999987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=97.99  E-value=8e-05  Score=58.76  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=64.8

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      +++++++.+.+.|.+.+||+  ++++|.  + ..+.|.|++.   +.     .++            ..|.-.+.|...|
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~--~-~~~~l~v~~~---~~-----~~~------------~~y~~~~~L~~~I   56 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPDA--KDPKIK--L-EPTSLSFKAK---GG-----GGG------------KKYEFDLEFYKEI   56 (108)
T ss_pred             ceeeeECCCEEEEEEEeCCC--CCcEEE--E-ECCEEEEEEE---cC-----CCC------------eeEEEEeEhhhhc
Confidence            68999999999999999998  788888  6 6889999964   11     011            1367778999999


Q ss_pred             ccCccEEEccCCcEEEEEEeccc
Q 025484          228 DPQQFSANFGFDGILEGTVKKQK  250 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e  250 (252)
                      ++++.+.++ .++.|+|+|.|++
T Consensus        57 ~pe~s~~~v-~~~kveI~L~K~~   78 (108)
T cd06465          57 DPEESKYKV-TGRQIEFVLRKKE   78 (108)
T ss_pred             cccccEEEe-cCCeEEEEEEECC
Confidence            999999999 8999999999987

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.96  E-value=3.7e-05  Score=70.32  Aligned_cols=65  Identities=25%  Similarity=0.424  Sum_probs=56.6

Q ss_pred             CCEEEEEEEeCCC-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccE
Q 025484          155 EDDYMFRIALPGV-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFS  233 (252)
Q Consensus       155 dd~yvV~adLPGV-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIk  233 (252)
                      .+.++|+++|||+ +..+|+|.  | .+..|.|...                        ...|.-.+.||..||.+.++
T Consensus       260 p~~lvv~i~LP~~~s~~~i~Ld--V-~~~~l~l~~~------------------------~~~y~L~l~LP~~V~~~~~~  312 (328)
T PF08190_consen  260 PEELVVEIELPGVESASDIDLD--V-SEDRLSLSSP------------------------KPKYRLDLPLPYPVDEDNGK  312 (328)
T ss_pred             CceEEEEEECCCcCccceeEEE--E-eCCEEEEEeC------------------------CCceEEEccCCCcccCCCce
Confidence            6899999999999 78999999  8 7889998832                        12577889999999999999


Q ss_pred             EEccCC--cEEEEEEe
Q 025484          234 ANFGFD--GILEGTVK  247 (252)
Q Consensus       234 Asy~~n--GVLtItLP  247 (252)
                      |+| ..  ++|+||||
T Consensus       313 Akf-~~~~~~L~vtlp  327 (328)
T PF08190_consen  313 AKF-DKKTKTLTVTLP  327 (328)
T ss_pred             EEE-ccCCCEEEEEEE
Confidence            999 44  89999998

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=97.88  E-value=9.6e-05  Score=55.62  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=64.4

Q ss_pred             eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484          150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP  229 (252)
Q Consensus       150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~  229 (252)
                      |++++++.+.|.+.++|+.++++.|+  + .++.|.+++...        .+             ..|.-.+.|...|++
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~--~-~~~~l~~~~~~~--------~~-------------~~y~~~~~L~~~I~p   56 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVE--F-EKRELSATVKLP--------SG-------------NDYSLKLHLLHPIVP   56 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEE--E-eCCEEEEEEECC--------CC-------------CcEEEeeecCceecc
Confidence            68899999999999999999999999  6 688999986411        11             146677789999999


Q ss_pred             CccEEEccCCcEEEEEEecccC
Q 025484          230 QQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       230 dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ++.+.+. ..+-++|+|.|+++
T Consensus        57 ~~s~~~v-~~~kiei~L~K~~~   77 (84)
T cd06489          57 EQSSYKI-LSTKIEIKLKKTEA   77 (84)
T ss_pred             hhcEEEE-eCcEEEEEEEcCCC
Confidence            9999999 78889999999864

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.73  E-value=0.0003  Score=52.42  Aligned_cols=74  Identities=20%  Similarity=0.238  Sum_probs=59.6

Q ss_pred             eEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcc
Q 025484          150 DVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD  228 (252)
Q Consensus       150 DI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD  228 (252)
                      +++++++.+.|.+.+| |++++|++|+  + .++.|.|+..   +       +              .+.-.-.|...|+
T Consensus         2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~--~-~~~~l~v~~~---~-------~--------------~~~l~~~L~~~I~   54 (85)
T cd06467           2 SWTQTLDEVTVTIPLPEGTKSKDVKVE--I-TPKHLKVGVK---G-------G--------------EPLLDGELYAKVK   54 (85)
T ss_pred             EEEeeCCEEEEEEECCCCCcceeEEEE--E-EcCEEEEEEC---C-------C--------------CceEcCcccCcee
Confidence            4788999999999997 7899999999  7 6789999842   1       0              1112224888999


Q ss_pred             cCccEEEccCC-cEEEEEEecccC
Q 025484          229 PQQFSANFGFD-GILEGTVKKQKH  251 (252)
Q Consensus       229 ~dkIkAsy~~n-GVLtItLPK~e~  251 (252)
                      ++...-++ .+ ..|+|+|+|+++
T Consensus        55 ~~~s~w~~-~~~~~v~i~L~K~~~   77 (85)
T cd06467          55 VDESTWTL-EDGKLLEITLEKRNE   77 (85)
T ss_pred             EcCCEEEE-eCCCEEEEEEEECCC
Confidence            99999999 78 899999999875

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.52  E-value=0.001  Score=50.52  Aligned_cols=74  Identities=19%  Similarity=0.240  Sum_probs=58.3

Q ss_pred             eEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcc
Q 025484          150 DVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD  228 (252)
Q Consensus       150 DI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD  228 (252)
                      +++++.+.+.|.+.+| |+.++|++|+  + ..+.|.+...   ++       .             .+ -.-+|...|+
T Consensus         2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~--~-~~~~l~v~~~---~~-------~-------------~~-~~g~L~~~I~   54 (85)
T cd06493           2 YWQQTEEDLTLTIRLPEDTTKEDIRIK--F-LPDHISIALK---DQ-------A-------------PL-LEGKLYSSID   54 (85)
T ss_pred             ccEEeCCEEEEEEECCCCCChhhEEEE--E-ecCEEEEEeC---CC-------C-------------eE-EeCcccCccc
Confidence            5789999999999996 9999999999  7 6788988731   11       1             11 2236888999


Q ss_pred             cCccEEEccCCc-EEEEEEecccC
Q 025484          229 PQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       229 ~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      ++...=+. .+| .|+|+|.|+++
T Consensus        55 ~d~Stw~i-~~~~~l~i~L~K~~~   77 (85)
T cd06493          55 HESSTWII-KENKSLEVSLIKKDE   77 (85)
T ss_pred             ccCcEEEE-eCCCEEEEEEEECCC
Confidence            99988887 677 79999999874

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=97.50  E-value=0.0016  Score=49.72  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             eeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcc
Q 025484          149 ADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD  228 (252)
Q Consensus       149 VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD  228 (252)
                      .|++++++.+.|.+-+.|+.++++.+.  + +++.|+++....        .+             -.|.-.+.|-.+|+
T Consensus         3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~--~-~~~~l~v~~~~~--------~~-------------~~y~~~l~L~~~I~   58 (87)
T cd06488           3 HDWHQTGSHVVVSVYAKNSNPELSVVE--A-NSTVLTIHIVFE--------GN-------------KEFQLDIELWGVID   58 (87)
T ss_pred             ccEeeCCCEEEEEEEECcCCccceEEE--e-cCCEEEEEEECC--------CC-------------ceEEEEeeccceEC
Confidence            689999999999999999999999999  7 577888874311        01             14777888999999


Q ss_pred             cCccEEEccCCcEEEEEEecccC
Q 025484          229 PQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       229 ~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +++.+-+. ..+-++|+|.|+++
T Consensus        59 ~~~s~~~v-~~~kvei~L~K~~~   80 (87)
T cd06488          59 VEKSSVNM-LPTKVEIKLRKAEP   80 (87)
T ss_pred             hhHcEEEe-cCcEEEEEEEeCCC
Confidence            99998888 78999999999874

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.49  E-value=0.0014  Score=49.78  Aligned_cols=79  Identities=22%  Similarity=0.212  Sum_probs=63.2

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCC---CCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEE-C
Q 025484          148 KADVGESEDDYMFRIALPGVKR---DDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITIN-L  223 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~K---EDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~-L  223 (252)
                      ..+++++++.+.|.+.+|++.+   ++++|+  + ..+.|.|++.   +.     ++.             .|.-.+. |
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~--~-~~~~l~v~~~---~~-----~~~-------------~~~~~~~~L   58 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVE--F-TERSFELKVH---DL-----NGK-------------NYRFTINRL   58 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEE--e-cCCEEEEEEE---CC-----CCc-------------EEEEEehHh
Confidence            3678999999999999999986   999999  6 6889999853   10     111             2444453 8


Q ss_pred             CCCcccCccEEEccCCcEEEEEEecccC
Q 025484          224 PGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       224 P~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      -..|++++.+.+. ..+-++|+|.|+++
T Consensus        59 ~~~I~~e~s~~~~-~~~ki~i~L~K~~~   85 (92)
T cd06468          59 LKKIDPEKSSFKV-KTDRIVITLAKKKE   85 (92)
T ss_pred             hCccCccccEEEE-eCCEEEEEEEeCCC
Confidence            8999999999999 78889999999875

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=96.48  E-value=0.028  Score=44.18  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             eeeEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484          148 KADVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP  226 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~  226 (252)
                      ..++..+.+++.|.+.|| |+++.|++|.  + ..+.|.|.-+   |+        .+    -    .|      .|...
T Consensus         7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~--i-~~~~l~V~~~---g~--------~~----l----~G------~L~~~   58 (93)
T cd06494           7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCK--L-GSRDISLAVK---GQ--------EV----L----KG------KLFDS   58 (93)
T ss_pred             CcEEEeEcCEEEEEEECCCCCceeeEEEE--E-EcCEEEEEEC---CE--------EE----E----cC------cccCc
Confidence            567999999999999998 8999999999  7 6889988831   21        00    0    23      47788


Q ss_pred             cccCccEEEccCCc-EEEEEEeccc
Q 025484          227 VDPQQFSANFGFDG-ILEGTVKKQK  250 (252)
Q Consensus       227 VD~dkIkAsy~~nG-VLtItLPK~e  250 (252)
                      |+++...=++ ++| +|.|+|.|.+
T Consensus        59 I~~destWtl-ed~k~l~I~L~K~~   82 (93)
T cd06494          59 VVADECTWTL-EDRKLIRIVLTKSN   82 (93)
T ss_pred             cCcccCEEEE-ECCcEEEEEEEeCC
Confidence            9999999999 666 5899999985

Little is known about the function of the proteins in this subgroup.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=96.33  E-value=0.068  Score=42.92  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      .++++++.+.+.|++.+|+  ..|++|+  + +++.|+++|.   +.     ++.             .|.-.+.|=..|
T Consensus         3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~--l-~~~~l~f~~~---~~-----~g~-------------~y~~~l~l~~~I   56 (106)
T cd00237           3 KTLWYDRRDYVFIEFCVED--SKDVKVD--F-EKSKLTFSCL---NG-----DNV-------------KIYNEIELYDRV   56 (106)
T ss_pred             cceeeECCCEEEEEEEeCC--CCCcEEE--E-ecCEEEEEEE---CC-----CCc-------------EEEEEEEeeccc
Confidence            7999999999999999999  4788888  6 5789999974   11     111             244566777889


Q ss_pred             ccCccEEEccCCcEEEEEEeccc
Q 025484          228 DPQQFSANFGFDGILEGTVKKQK  250 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e  250 (252)
                      ++++.+-+. ..--++|.|.|++
T Consensus        57 ~pe~Sk~~v-~~r~ve~~L~K~~   78 (106)
T cd00237          57 DPNDSKHKR-TDRSILCCLRKGK   78 (106)
T ss_pred             CcccCeEEe-CCceEEEEEEeCC
Confidence            998877776 4556888899975

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.85  E-value=0.046  Score=51.62  Aligned_cols=79  Identities=9%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ..|+|.+++.++|.+-+.|+.++++.|+  + .++.|.|+-...        .+             -.|.-.+.|-..|
T Consensus       158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~--~-~~~~l~v~~~~~--------~~-------------~~y~~~~~L~~~I  213 (356)
T PLN03088        158 RHEFYQKPEEVVVTVFAKGVPAENVNVD--F-GEQILSVVIEVP--------GE-------------DAYHLQPRLFGKI  213 (356)
T ss_pred             ccceeecCCEEEEEEEecCCChHHcEEE--e-ecCEEEEEEecC--------CC-------------cceeecccccccc
Confidence            6899999999999999999999999999  6 678888884211        11             1355567899999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ++++.+-+. .---++|+|.|+++
T Consensus       214 ~p~~s~~~v-~~~Kiei~l~K~~~  236 (356)
T PLN03088        214 IPDKCKYEV-LSTKIEIRLAKAEP  236 (356)
T ss_pred             cccccEEEE-ecceEEEEEecCCC
Confidence            999998888 67789999999864

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=95.51  E-value=0.3  Score=37.49  Aligned_cols=75  Identities=11%  Similarity=0.097  Sum_probs=55.2

Q ss_pred             eEEEeCCEEEEEEEeCC--CCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          150 DVGESEDDYMFRIALPG--VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       150 DI~Etdd~yvV~adLPG--V~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      |+|.+++.++|.+=..+  ..+.++.+.  . ..+.|.|+-..       .  +             -.|...+.|=..|
T Consensus         2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~--~-~~~~l~v~~~~-------~--~-------------~~~~~~~~L~~~I   56 (87)
T cd06490           2 DWFQTDSEVTIVVYTKSKGNPADIVIVD--D-QQRELRVEIIL-------G--D-------------KSYLLHLDLSNEV   56 (87)
T ss_pred             CceECCCEEEEEEEEcccCCCCccEEEE--C-CCCEEEEEEEC-------C--C-------------ceEEEeeeccccC
Confidence            89999999999999885  556666666  5 56688887321       0  0             1367777898999


Q ss_pred             ccCccEEEccC--CcEEEEEEecccC
Q 025484          228 DPQQFSANFGF--DGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~--nGVLtItLPK~e~  251 (252)
                      +++. +.++ .  -|-++|+|.|+++
T Consensus        57 ~~~~-~~~~-~~~~~KVEI~L~K~e~   80 (87)
T cd06490          57 QWPC-EVRI-STETGKIELVLKKKEP   80 (87)
T ss_pred             CCCc-EEEE-cccCceEEEEEEcCCC
Confidence            8875 5555 4  6799999999875

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=95.16  E-value=0.062  Score=47.83  Aligned_cols=78  Identities=18%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ..|+|++...++|.+-.+||.++|+.|+  + .+++|.|.-....|                     ..|.-...|=..|
T Consensus         5 r~DwyQt~~~vvIti~~k~v~~~~v~v~--~-s~~~l~~~~~~~~g---------------------~~~~l~~~L~~~I   60 (196)
T KOG1309|consen    5 RHDWYQTETSVVITIFAKNVPKEDVNVE--I-SENTLSIVIQLPSG---------------------SEYNLQLKLYHEI   60 (196)
T ss_pred             cceeecCCceEEEEEEecCCCccceeEE--e-ecceEEEEEecCCc---------------------hhhhhhHHhcccc
Confidence            6899999999999999999999999999  8 68888877332111                     1244444477788


Q ss_pred             ccCccEEEccCCcEEEEEEeccc
Q 025484          228 DPQQFSANFGFDGILEGTVKKQK  250 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e  250 (252)
                      .+++.+-+. ----++|+|+|.+
T Consensus        61 ~pe~~s~k~-~stKVEI~L~K~~   82 (196)
T KOG1309|consen   61 IPEKSSFKV-FSTKVEITLAKAE   82 (196)
T ss_pred             cccceeeEe-eeeeEEEEecccc
Confidence            888876666 4566889999865

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=94.02  E-value=0.6  Score=35.96  Aligned_cols=73  Identities=14%  Similarity=0.197  Sum_probs=54.4

Q ss_pred             EEEeCCEEEEEEEeC-C--CCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          151 VGESEDDYMFRIALP-G--VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       151 I~Etdd~yvV~adLP-G--V~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      +..+.+++.|.+.|| |  +++.||+|.  + ..+.|.|.-+   |+       ..+ .       .|      .|...|
T Consensus         3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~--i-~~~~l~v~~~---g~-------~~~-i-------~G------~L~~~V   55 (87)
T cd06492           3 WTQTLSEVELKVPFKVSFRLKGKDVVVD--I-QRKHLKVGLK---GQ-------PPI-I-------DG------ELYNEV   55 (87)
T ss_pred             cEeecCEEEEEEECCCCCCccceEEEEE--E-ecCEEEEEEC---CC-------ceE-E-------eC------cccCcc
Confidence            346788899999996 3  899999999  7 6788888721   21       100 1       13      467889


Q ss_pred             ccCccEEEccCCc-EEEEEEecccC
Q 025484          228 DPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      +++...=++ ++| .|.|+|-|+++
T Consensus        56 ~~des~Wtl-ed~~~l~i~L~K~~~   79 (87)
T cd06492          56 KVEESSWLI-EDGKVVTVNLEKINK   79 (87)
T ss_pred             cccccEEEE-eCCCEEEEEEEECCC
Confidence            999988999 886 89999999853

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=91.47  E-value=2.9  Score=33.50  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             eeeEEEeCCEEEEEEEeC-CC-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          148 KADVGESEDDYMFRIALP-GV-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-GV-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      ..-+..|.+++.|.+.|| |+ +..||.|.  + ..+.|.|.-+   +.    .....+ .       .|      .|..
T Consensus         6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~--i-~~~~l~v~~~---~~----~~~~~~-i-------~G------~L~~   61 (102)
T cd06495           6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVD--L-QSSSIRVSVR---DG----GGEKVL-M-------EG------EFTH   61 (102)
T ss_pred             ceEEEeECCeEEEEEECCCCCccceEEEEE--E-EcCEEEEEEe---cC----CCCceE-E-------eC------cccC
Confidence            455778999999999999 64 67899999  7 6788888732   10    001111 1       13      4778


Q ss_pred             CcccCccEEEccCCc-EEEEEEeccc
Q 025484          226 PVDPQQFSANFGFDG-ILEGTVKKQK  250 (252)
Q Consensus       226 ~VD~dkIkAsy~~nG-VLtItLPK~e  250 (252)
                      .|+++...=++ ++| .|.|+|-|..
T Consensus        62 ~V~~des~Wtl-ed~~~l~I~L~K~~   86 (102)
T cd06495          62 KINTENSLWSL-EPGKCVLLSLSKCS   86 (102)
T ss_pred             cccCccceEEE-eCCCEEEEEEEECC
Confidence            89999999999 886 5899999975

Little is known about the function of the proteins in this subgroup.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	4e-07
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	1e-06
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	6e-06
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	1e-05

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 110 FIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKR 169
              +   ++      AA +S     G+   G+    +    + E +        LPGV +
Sbjct: 23  MTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPI---SIIEGDQHIKVIAWLPGVNK 79

Query: 170 DDDEFSCTVDPTGKIL-IKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD 228
           +D      ++  G  L I+   +    + ++     E+  +          TI LP  V 
Sbjct: 80  ED----IILNAVGDTLEIRAKRSPLMITESERIIYSEIPEE-----EEIYRTIKLPATVK 130

Query: 229 PQQFSANFGFDGILEGTVKK 248
            +  SA F  +G+L   + K
Sbjct: 131 EENASAKFE-NGVLSVILPK 149

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
           + D+ E  + ++    LPG+          V     IL    +  GE+           +
Sbjct: 6   RVDIKEEVNHFVLYADLPGIDPSQ----IEVQMDKGIL----SIRGERKSES-----STE 52

Query: 208 TQNLT----PAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
           T+  +      G F     LP   D    +A    +G+LE  + K
Sbjct: 53  TERFSRIERRYGSFHRRFALPDSADADGITAAGR-NGVLEIRIPK 96

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 129 SGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKG 188
              +  G  T       +   D  E+ + ++F+  LPGVK+++      V+  G +L   
Sbjct: 29  PAISGGGSETAAFANARM---DWKETPEAHVFKADLPGVKKEE--VKVEVED-GNVL--- 79

Query: 189 VTTTGEKSVNKFSQVFEMQTQNLT----PAGPFSITINLPGPVDPQQFSANFGFDGILEG 244
              +GE++  K     E +          +G F     L      ++  A    +G+L  
Sbjct: 80  -VVSGERTKEK-----EDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE-NGVLTV 132

Query: 245 TVKKQKH 251
           TV K + 
Sbjct: 133 TVPKAEV 139

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 14/104 (13%)

Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
             D+ E     +    L G  ++       V    +++I+      E  V   +Q     
Sbjct: 26  PVDMYEEGGYLVVVADLAGFNKEK--IKARVSGQNELIIEAEREITEPGVKYLTQRP--- 80

Query: 208 TQNLTPAGPFSITINLPGPVDP-QQFSANFGFDGILEGTVKKQK 250
                        I LP  V    + S  +  +G+L   +    
Sbjct: 81  -------KYVRKVIRLPYNVAKDAEISGKYE-NGVLTIRIPIAG 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.92
4fei_A	102	Heat shock protein-related protein; stress respons	99.91
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.91
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.9
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.89
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.86
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.85
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.85
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.83
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.8
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.77
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.74
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.0
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.99
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.97
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.79
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.64
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.56
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.55
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	97.44
3igf_A	374	ALL4481 protein; two-domained protein consisting o	97.43
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.21
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	97.12
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	97.04
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	96.98
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	96.67
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	96.62

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.92  E-value=2.4e-25  Score=171.53  Aligned_cols=98  Identities=22%  Similarity=0.379  Sum_probs=82.9

Q ss_pred             CCCCCCceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEE
Q 025484          141 QVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSIT  220 (252)
Q Consensus       141 ~~~P~~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~  220 (252)
                      .|.|   ++||+|++++|+|.++|||++|+||+|+  + .++.|+|+|++...   .......|++.+|.   +|+|+|+
T Consensus         2 ~~~P---~~di~e~~~~~~v~~~lPG~~~edi~v~--~-~~~~L~I~g~~~~~---~~~~~~~~~~~er~---~g~f~r~   69 (100)
T 3gla_A            2 QWVP---RVDIKEEVNHFVLYADLPGIDPSQIEVQ--M-DKGILSIRGERKSE---SSTETERFSRIERR---YGSFHRR   69 (100)
T ss_dssp             CSCC---CEEEEECSSEEEEEEECTTSCGGGCEEE--E-ETTEEEEEEEECCG---GGSSGGGEEEECCC---CEEEEEE
T ss_pred             CccC---cEEEEECCCEEEEEEECCCCCHHHEEEE--E-ECCEEEEEEEEcCc---CccCCccEEEEeec---ceEEEEE
Confidence            4778   8999999999999999999999999999  7 68999999864311   12233456666676   7999999


Q ss_pred             EECCCCcccCccEEEccCCcEEEEEEecccC
Q 025484          221 INLPGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       221 I~LP~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      |.||.+||.++|+|+| +||||+|+|||.+.
T Consensus        70 ~~LP~~vd~~~i~A~~-~~GvL~I~~pK~~~   99 (100)
T 3gla_A           70 FALPDSADADGITAAG-RNGVLEIRIPKRPA   99 (100)
T ss_dssp             EECCTTBCTTSCEEEE-ETTEEEEEEEBC--
T ss_pred             EECCCCcChHHeEEEE-eCCEEEEEEecCCC
Confidence            9999999999999999 99999999999864

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.91  E-value=1.1e-24  Score=169.58  Aligned_cols=94  Identities=20%  Similarity=0.334  Sum_probs=81.1

Q ss_pred             CCCCCCCceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEE
Q 025484          140 GQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSI  219 (252)
Q Consensus       140 ~~~~P~~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R  219 (252)
                      +.|.|   ++||+|++++|+|.++|||++|+||+|+  + .++.|+|+|++.     .  +.. +++.+|+   +|+|.|
T Consensus         3 g~~~P---~~di~e~~~~~~v~~~lPG~~~edi~v~--~-~~~~L~I~g~~~-----~--~~~-~~~~er~---~g~f~R   65 (102)
T 4fei_A            3 GPWTP---AADWRDAGTHLDLLLDVPGVDAGTLALA--E-DGGQLTVSGERP-----G--TEH-LLRSERP---SGRFVR   65 (102)
T ss_dssp             EECCC---CEEEEEETTEEEEEEECTTCCGGGCEEE--E-ETTEEEEEEEEC-----C--CSS-CSSCCSE---EEEEEE
T ss_pred             CcccC---cEEEEEcCCEEEEEEECCCCchHhEEEE--E-ECCEEEEEEEEe-----c--CCC-EEEEEEe---ccEEEE
Confidence            45788   8999999999999999999999999999  7 689999997642     1  222 3344455   699999


Q ss_pred             EEECCCCcccCccEEEccCCcEEEEEEecccC
Q 025484          220 TINLPGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       220 ~I~LP~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +|.||.+||.++|+|+| +||||+|+|||.++
T Consensus        66 ~~~LP~~vd~~~i~A~~-~~GvL~I~lpK~~~   96 (102)
T 4fei_A           66 ELAFPEPVRPASGVASL-AGGVLTVRFEKLRP   96 (102)
T ss_dssp             EEECSSCBCTTCCEEEE-ETTEEEEEEEBSSC
T ss_pred             EEECCCCcchhHcEEEE-ECCEEEEEEEccCc
Confidence            99999999999999999 99999999999875

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.91  E-value=4.7e-24  Score=178.12  Aligned_cols=94  Identities=20%  Similarity=0.229  Sum_probs=80.0

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEe-ecCCCccEEEEEECCCC
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQ-NLTPAGPFSITINLPGP  226 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer-~~cp~G~F~R~I~LP~~  226 (252)
                      ++||+|++++|+|.++|||++|+||+|+  + .+|.|+|+|++...   ....+..+++.+| .   +|+|.|+|.||.+
T Consensus        58 pvdi~e~~~~~~v~~dlPG~~~edi~V~--~-~~~~L~I~g~~~~~---~~~~~~~~~~~Er~~---~g~f~R~~~LP~~  128 (161)
T 4eld_A           58 PISIIEGDQHIKVIAWLPGVNKEDIILN--A-VGDTLEIRAKRSPL---MITESERIIYSEIPE---EEEIYRTIKLPAT  128 (161)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEE--E-ETTEEEEEEECCCC---CCCSSCEEEEECSCC---CCEEEEEEECSSC
T ss_pred             ceeEEEeCCEEEEEEECCCCChHhEEEE--E-ECCEEEEEEEEccc---ccCCCceEEEEEeec---cccEEEEEECCCC
Confidence            5999999999999999999999999999  7 68999999874311   1123334666667 6   7999999999999


Q ss_pred             cccCccEEEccCCcEEEEEEecccC
Q 025484          227 VDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       227 VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ||.++|+|+| +||||+|+|||.+.
T Consensus       129 vd~~~i~A~~-~nGvL~I~lpK~~~  152 (161)
T 4eld_A          129 VKEENASAKF-ENGVLSVILPKAES  152 (161)
T ss_dssp             BCGGGCEEEE-ETTEEEEEEEBCGG
T ss_pred             cccccEEEEE-ECCEEEEEEEcCCC
Confidence            9999999999 99999999999753

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.90  E-value=4.8e-24  Score=170.76  Aligned_cols=93  Identities=17%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             CCCCCceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCC-CEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEE
Q 025484          142 VGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPT-GKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSIT  220 (252)
Q Consensus       142 ~~P~~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d-~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~  220 (252)
                      |.|   ++||+|++++|+|.++|||++|+||+|+  + .+ +.|+|+|.+.     ... +..|++.+|.   + +|.|+
T Consensus        23 ~~P---~~di~e~~~~~~v~~~lPG~~~edi~V~--v-~~~~~L~I~g~~~-----~~~-~~~~~~~Er~---~-~f~R~   86 (123)
T 3aab_A           23 VYP---PVDMYEEGGYLVVVADLAGFNKEKIKAR--V-SGQNELIIEAERE-----ITE-PGVKYLTQRP---K-YVRKV   86 (123)
T ss_dssp             HCS---CEEEEEETTEEEEEEECCSCCGGGCEEE--E-ETTTEEEEEEECC-----CCC-CSCEEEECSC---S-EEEEE
T ss_pred             CCC---cEEEEEcCCEEEEEEECCCCCHHHEEEE--E-eCCCEEEEEEEEe-----ccC-CCeEEEEEEe---E-EEEEE
Confidence            456   8999999999999999999999999999  7 57 9999998643     122 3445666676   7 99999


Q ss_pred             EECCCCcccCcc-EEEccCCcEEEEEEecccC
Q 025484          221 INLPGPVDPQQF-SANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       221 I~LP~~VD~dkI-kAsy~~nGVLtItLPK~e~  251 (252)
                      |.||.+||.++| +|+| +||||+|++||.+.
T Consensus        87 ~~LP~~vd~~~i~~A~~-~~GvL~I~lPK~~~  117 (123)
T 3aab_A           87 IRLPYNVAKDAEISGKY-ENGVLTIRIPIAGT  117 (123)
T ss_dssp             EECSSEECTTCCCEEEE-ETTEEEEEEEGGGE
T ss_pred             EECCCCcCcchhCeeEE-cCCEEEEEEEcCCC
Confidence            999999999999 9999 99999999999763

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.89  E-value=3.2e-23  Score=172.30  Aligned_cols=99  Identities=20%  Similarity=0.341  Sum_probs=82.8

Q ss_pred             CCCCCCceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEE
Q 025484          141 QVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSIT  220 (252)
Q Consensus       141 ~~~P~~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~  220 (252)
                      .|.|   ++||+|++++|+|.++|||++|+||+|+  +.+++.|+|+|++..   .....+..|++.+|.   +|+|+|+
T Consensus        41 ~~~p---~~di~e~~d~~~v~~dlPGv~kedI~V~--v~~~~~L~I~g~~~~---~~~~~~~~~~~~Er~---~g~F~R~  109 (151)
T 1gme_A           41 FANA---RMDWKETPEAHVFKADLPGVKKEEVKVE--VEDGNVLVVSGERTK---EKEDKNDKWHRVERS---SGKFVRR  109 (151)
T ss_dssp             HGGG---CEEEEECSSEEEEEEECTTCCGGGEEEE--EETTTEEEEEECCCC---CCCCTTCEEEECCCC---CCCEEEE
T ss_pred             ccCC---ceEEEEcCCEEEEEEECCCCChHHEEEE--EecCCEEEEEEEEcc---ccccCCceEEEEeEe---ccEEEEE
Confidence            4566   8999999999999999999999999999  524679999986431   112234556666676   7999999


Q ss_pred             EECCCCcccCccEEEccCCcEEEEEEecccC
Q 025484          221 INLPGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       221 I~LP~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      |.||.+||.++|+|+| +||||+|+|||.++
T Consensus       110 ~~LP~~vd~~~i~A~~-~nGvL~I~lPK~~~  139 (151)
T 1gme_A          110 FRLLEDAKVEEVKAGL-ENGVLTVTVPKAEV  139 (151)
T ss_dssp             EECSSCCCGGGCEEEE-ETTEEEEEEECCCC
T ss_pred             EECCCCccccceEEEE-ECCEEEEEEEccCc
Confidence            9999999999999999 99999999999763

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.86  E-value=2.6e-21  Score=152.17  Aligned_cols=89  Identities=19%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             ceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484          147 GKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP  226 (252)
Q Consensus       147 ~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~  226 (252)
                      +.+||+|++++|+|.++||||+|+||+|+  + .+|.|+|+|+.     +.......|.   +     +.|.|+|.||.+
T Consensus         3 g~~~i~e~~~~~~v~~dlPG~~~edi~V~--v-~~~~L~I~g~~-----~~~~~~~~~~---~-----~eF~R~~~LP~~   66 (106)
T 3l1e_A            3 GISEVRSDRDKFVIFLDVKHFSPEDLTVK--V-QEDFVEIHGKH-----NERQDDHGYI---S-----REFHRRYRLPSN   66 (106)
T ss_dssp             CSEEEEECSSEEEEEEECTTSCGGGEEEE--E-ETTEEEEEEEE-----EEEETTTEEE---E-----EEEEEEEECCTT
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEE--E-ECCEEEEEEEE-----ccccCCCCEE---E-----EEEEEEEECCCC
Confidence            36999999999999999999999999999  7 68999999752     2222222232   1     369999999999


Q ss_pred             cccCccEEEccCCcEEEEEEecccC
Q 025484          227 VDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       227 VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ||.++|+|+|++||||+|++||.++
T Consensus        67 vd~~~i~A~~s~~GvL~I~~PK~~~   91 (106)
T 3l1e_A           67 VDQSALSCSLSADGMLTFSGPKIPS   91 (106)
T ss_dssp             BCTTSCEEEECTTSEEEEEEEBCCC
T ss_pred             cChhHcEEEECCCCEEEEEEEccCc
Confidence            9999999999559999999999764

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.85  E-value=1.7e-21  Score=151.83  Aligned_cols=88  Identities=14%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      .+||+|++++|+|.++|||++++||+|+  + .+|.|+|+|++     +....+..|++        ..|.|+|.||.+|
T Consensus         3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~--v-~~~~L~I~g~~-----~~~~~~~~~~~--------~eF~R~~~LP~~v   66 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVKHFSPEEISVK--V-VGDHVEVHARH-----EERPDEHGFIA--------REFHRRYRLPPGV   66 (101)
T ss_dssp             CCCCCCCSSCEEEEEECTTSCGGGEEEE--E-ETTEEEEEEEE-----EECSSTTCCEE--------EEEEEEEECCTTB
T ss_pred             cEEEEEeCCEEEEEEECCCCcHHHeEEE--E-ECCEEEEEEEE-----ecccCCCCEEE--------EEEEEEEECCCCc
Confidence            6999999999999999999999999999  7 68999999763     22222222221        2599999999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      |.++|+|+|++||||+|++||.+.
T Consensus        67 d~~~i~A~~s~nGvL~I~lPK~~~   90 (101)
T 2wj5_A           67 DPAAVTSALSPEGVLSIQATPASA   90 (101)
T ss_dssp             CTTCCEEEECTTSEEEEEECBCCC
T ss_pred             ChhHCEEEECCCCEEEEEEECCCc
Confidence            999999999449999999999764

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.85  E-value=2e-21  Score=147.28  Aligned_cols=83  Identities=19%  Similarity=0.237  Sum_probs=68.0

Q ss_pred             EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484          151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ  230 (252)
Q Consensus       151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d  230 (252)
                      +.|++++|.|.++||||+|+||+|+  + .+|.|+|+|++.     .......     ..   +|+|.|+|.||.+||++
T Consensus         2 ~~E~~~~~~v~~dlPG~~~edi~V~--v-~~~~L~I~g~~~-----~~~~~~~-----~~---~~~F~R~~~LP~~vd~~   65 (85)
T 3q9p_A            2 GSHTADRWRVSLDVNHFAPDELTVK--T-KDGVVEITGKHA-----ARQDEHG-----YI---SRCFTRKYTLPPGVDPT   65 (85)
T ss_dssp             -CCCCCEEEEEEECTTTCCSEEEEE--E-ETTEEEEEEEEC-----------------CC---CEEEEEEEECCTTCCGG
T ss_pred             ccCcCCEEEEEEECCCCChHHEEEE--E-ECCEEEEEEEEc-----cccCCCC-----EE---EEEEEEEEECCCCcChH
Confidence            4689999999999999999999999  7 689999997643     1111110     11   47999999999999999


Q ss_pred             ccEEEccC-CcEEEEEEeccc
Q 025484          231 QFSANFGF-DGILEGTVKKQK  250 (252)
Q Consensus       231 kIkAsy~~-nGVLtItLPK~e  250 (252)
                      +|+|+| + ||||+|++||.+
T Consensus        66 ~i~A~~-~~~GvL~I~lPK~k   85 (85)
T 3q9p_A           66 QVSSSL-SPEGTLTVEAPMPK   85 (85)
T ss_dssp             GCEEEE-CTTSEEEEEEECCC
T ss_pred             HcEEEE-CCCCEEEEEEEcCC
Confidence            999999 8 999999999974

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.83  E-value=3.8e-20  Score=170.97  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=75.3

Q ss_pred             eeeEEEeCC----EEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEEC
Q 025484          148 KADVGESED----DYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINL  223 (252)
Q Consensus       148 ~VDI~Etdd----~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~L  223 (252)
                      ++||+|+++    +|+|.++|||++|+||+|+  + ++|.|+|+|+..     ...+.+      +.   +|+|.|+|.|
T Consensus       100 ~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~--v-~~~~L~I~ge~~-----~~~e~~------r~---~g~F~R~~~L  162 (314)
T 2bol_A          100 LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIK--A-DKNKLVVRAQKS-----VACGDA------AM---SESVGRSIPL  162 (314)
T ss_dssp             GGGCEEECTTSSEEEEEEEECTTCCTTTEEEE--E-ETTEEEEEECCB-----SSTTCC------CB---CCCEEEEEEC
T ss_pred             ccceEEcCCCCceEEEEEEECCCCchHHeEEE--E-ECCEEEEEEEEe-----ccCCCC------EE---EEEEEEEEEC
Confidence            899999999    9999999999999999999  7 799999997632     221221      33   6999999999


Q ss_pred             CCCcccCccEEEccC-CcEEEEEEecccC
Q 025484          224 PGPVDPQQFSANFGF-DGILEGTVKKQKH  251 (252)
Q Consensus       224 P~~VD~dkIkAsy~~-nGVLtItLPK~e~  251 (252)
                      |..||+++|+|+| + ||||+|++||.++
T Consensus       163 P~~Vd~e~i~A~~-~~nGVL~I~lPK~~~  190 (314)
T 2bol_A          163 PPSVDRNHIQATI-TTDDVLVIEAPVNEP  190 (314)
T ss_dssp             CTTBCGGGCEEEE-CSSSEEEEEEEBSSC
T ss_pred             CCCccccccEEEE-eCCCEEEEEEeccCc
Confidence            9999999999999 8 9999999999764

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.80  E-value=1.3e-19  Score=138.21  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             EeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCcc
Q 025484          153 ESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQF  232 (252)
Q Consensus       153 Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkI  232 (252)
                      +++++|+|.++|||++++||+|+  + .++.|+|+|+..     ....+..|++        +.|.|+|.||.+||.++|
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~--v-~~~~L~I~g~~~-----~~~~~~~~~~--------~ef~R~~~LP~~vd~~~i   66 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVK--V-LGDVIEVHGKHE-----ERQDEHGFIS--------REFHRKYRIPADVDPLTI   66 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEE--E-ETTEEEEEEEEE-----EEECSSSEEE--------EEEEEEEECCTTBCGGGC
T ss_pred             cCCCEEEEEEECCCCcHHHeEEE--E-ECCEEEEEEEEe-----cccCCCCEEE--------EEEEEEEECCCCcChhHc
Confidence            68999999999999999999999  7 689999997632     2212222321        259999999999999999


Q ss_pred             EEEccCCcEEEEEEecccC
Q 025484          233 SANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       233 kAsy~~nGVLtItLPK~e~  251 (252)
                      +|+|++||||+|++||.+.
T Consensus        67 ~A~~~~~GvL~I~~pK~~~   85 (90)
T 2y1y_A           67 TSSMSSDGVLTVNGPRKQV   85 (90)
T ss_dssp             EEEECTTSEEEEEECBC--
T ss_pred             EEEECCCCEEEEEEEcCCC
Confidence            9999449999999999763

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.77  E-value=6.3e-19  Score=150.55  Aligned_cols=87  Identities=15%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      .+||+|++++|+|.++|||++|+||+|+  + .+|.|+|+|+.     +...++..+.   +     ..|.|+|.||.+|
T Consensus        65 ~~dv~e~~d~~~v~~dlPG~~~edI~V~--v-~~~~L~I~g~~-----~~~~~~~~~~---~-----reF~R~~~LP~~V  128 (175)
T 2klr_A           65 LSEMRLEKDRFSVNLDVKHFSPEELKVK--V-LGDVIEVHGKH-----EERQDEHGFI---S-----REFHRKYRIPADV  128 (175)
T ss_dssp             ----CCCCSEEEEEECCSSCCGGGEEEE--E-ETTEEEEEEEE-----EEEEETTEEE---E-----EEEEEEEECTTTC
T ss_pred             ceEEEEcCCeEEEEEECCCCChHHEEEE--E-ECCEEEEEEEE-----cccccCCceE---E-----EEEEEEEECCCCc
Confidence            5899999999999999999999999999  7 68999999763     2221222232   1     2599999999999


Q ss_pred             ccCccEEEccCCcEEEEEEeccc
Q 025484          228 DPQQFSANFGFDGILEGTVKKQK  250 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e  250 (252)
                      |.++|+|+|++||||+|++||.+
T Consensus       129 d~~~i~A~~s~dGvL~I~lPK~~  151 (175)
T 2klr_A          129 DPLTITSSLSSDGVLTVNGPRKQ  151 (175)
T ss_dssp             CTTTCEEEECTTSCEEEEEECC-
T ss_pred             ChhHeEEEEcCCCEEEEEEECCC
Confidence            99999999944999999999975

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.74  E-value=3.4e-18  Score=157.92  Aligned_cols=89  Identities=17%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             eeeEEEeC---CEEEEEEEe-CCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEEC
Q 025484          148 KADVGESE---DDYMFRIAL-PGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINL  223 (252)
Q Consensus       148 ~VDI~Etd---d~yvV~adL-PGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~L  223 (252)
                      ..+|.+++   ++|+|.++| ||++|+||+|+  | ++|.|+|+|++     +....  .+++.+|+   +|+|+|+|.|
T Consensus       222 ~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~--v-~~~~LtI~ge~-----~~~~~--~~~~~Er~---~g~F~R~~~L  288 (314)
T 2bol_A          222 GLEIVTAEDGSKKIHLELKVDPHFAPKDVKVW--A-KGNKVYVHGVT-----GKEEK--TENASHSE---HREFYKAFVT  288 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCGGGEEEE--E-SSSEEEEEEEE-----C-----------------CEEEEEEEEC
T ss_pred             CCcEEEecCCCcEEEEEEEcCCCCChHHeEEE--E-ECCEEEEEEEE-----eccCC--ceEEEEEe---eeEEEEEEEC
Confidence            46777765   589999999 99999999999  8 79999999763     32222  23555676   8999999999


Q ss_pred             CCCcccCccEEEccCCcEEEEEEeccc
Q 025484          224 PGPVDPQQFSANFGFDGILEGTVKKQK  250 (252)
Q Consensus       224 P~~VD~dkIkAsy~~nGVLtItLPK~e  250 (252)
                      |.+||+++|+|+| +||||+|++||.+
T Consensus       289 P~~vd~~~i~A~~-~dGvL~i~~Pk~~  314 (314)
T 2bol_A          289 PEVVDASKTQAEI-VDGLMVVEAPLFK  314 (314)
T ss_dssp             SSEECGGGCEEEE-ETTEEEEEEEEEC
T ss_pred             CCCcChHHeEEEE-eCCEEEEEEecCC
Confidence            9999999999999 9999999999964

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.00  E-value=1.9e-09  Score=80.69  Aligned_cols=79  Identities=8%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      .+|++++++.+.|.+.+||+.+++++|+  + .++.|.|++..   .     +             ...|...+.|+..|
T Consensus         4 ~~~W~Qt~~~V~v~i~~~~v~~~~v~v~--~-~~~~l~v~~~~---~-----~-------------~~~y~~~~~L~~~I   59 (92)
T 2xcm_C            4 RHEYYQKPEEVVVTVFAKGIPKQNVNID--F-GEQILSVVIEV---P-----G-------------EDAYYLQPRLFGKI   59 (92)
T ss_dssp             EEEEEEETTEEEEEEECCSCCGGGEEEE--E-CSSBEEEEECC---T-----T-------------SCCEEECCBBSSCB
T ss_pred             cccEEeCCCEEEEEEEECCCChHHeEEE--E-ECCEEEEEEEc---C-----C-------------CcEEEEeeEcCCcc
Confidence            7999999999999999999999999999  7 78899999641   1     1             13588899999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ++++.++++ .+|.|+|+|+|+++
T Consensus        60 ~~~~s~~~~-~~~~l~i~L~K~~~   82 (92)
T 2xcm_C           60 IPDKCKYEV-LSTKIEICLAKADI   82 (92)
T ss_dssp             CGGGCEEEE-CSSCEEEEEEBSSS
T ss_pred             CchhEEEEE-ECCEEEEEEEcCCC
Confidence            999999999 89999999999864

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.99  E-value=1.9e-09  Score=84.24  Aligned_cols=79  Identities=15%  Similarity=0.226  Sum_probs=69.8

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      .+|++++++.+.|.+.+||+++++++|.  + .++.|.|++...        +             ...|...+.|+..|
T Consensus        11 ~~~W~Qt~~~V~v~i~l~~v~~~~v~v~--~-~~~~l~v~~~~~--------~-------------~~~y~~~~~L~~~I   66 (114)
T 1rl1_A           11 KYDWYQTESQVVITLMIKNVQKNDVNVE--F-SEKELSALVKLP--------S-------------GEDYNLKLELLHPI   66 (114)
T ss_dssp             CEEEEECSSEEEEEECCCSCCGGGEEEE--C-SSSCEEEEEECT--------T-------------SSEEEEEECBSSCC
T ss_pred             CccEEeCCCEEEEEEEeCCCCHHHCEEE--E-EcCEEEEEEEeC--------C-------------CcEEEEEeeCCCcC
Confidence            7999999999999999999999999999  8 788999996411        1             13588999999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ++++.++++ .+|.|+|+|+|+++
T Consensus        67 ~~e~s~~~~-~~~~l~i~L~K~~~   89 (114)
T 1rl1_A           67 IPEQSTFKV-LSTKIEIKLKKPEA   89 (114)
T ss_dssp             CGGGEEEEE-CSSSEEEEEECSSC
T ss_pred             CccccEEEE-ECCEEEEEEEcCCC
Confidence            999999999 89999999999864

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=2e-05  Score=65.16  Aligned_cols=75  Identities=15%  Similarity=0.319  Sum_probs=63.7

Q ss_pred             eeeEEEeCCEEEEEEEeCCCC--CCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          148 KADVGESEDDYMFRIALPGVK--RDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~--KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      ...|..+++.++|.+-+|.++  ..++++.  | ++..+....                          -.|.-++.||.
T Consensus         5 ~F~itQd~e~viV~Ik~P~~~~~~sdiei~--v-~~~~F~F~~--------------------------~PYyLRL~LP~   55 (134)
T 2k8q_A            5 RFSITQDEEFIFLKIFISNIRFSAVGLEII--I-QENMIIFHL--------------------------SPYYLRLRFPH   55 (134)
T ss_dssp             EEEEEECSSEEEEEEECCSSCCCSSSCCCE--E-CSSSEEECS--------------------------SSSCEEECCSS
T ss_pred             eEEEEECCCEEEEEEEcCccccCccccEEE--E-eCCEEEEec--------------------------CCeEEEecCCC
Confidence            788999999999999999999  8999999  7 566665551                          25788899999


Q ss_pred             Cc-ccCccEEEcc-CCcEEEEEEecccC
Q 025484          226 PV-DPQQFSANFG-FDGILEGTVKKQKH  251 (252)
Q Consensus       226 ~V-D~dkIkAsy~-~nGVLtItLPK~e~  251 (252)
                      .| +.++.+|+|+ +.|.|+|+|||..+
T Consensus        56 ~V~e~~~~kA~YD~d~~~~~VtLpK~~~   83 (134)
T 2k8q_A           56 ELIDDERSTAQYDSKDECINVKVAKLNK   83 (134)
T ss_dssp             CEECCSSCEEEEETTTTEEEEEEEESST
T ss_pred             eeecCCCcceeEeccCCEEEEEEeCCCC
Confidence            99 8899999995 27999999999754

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00023  Score=57.50  Aligned_cols=78  Identities=15%  Similarity=0.347  Sum_probs=64.4

Q ss_pred             CCCCCceeeEEEeCCEEEEEEEeCCCC--CCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEE
Q 025484          142 VGPHVGKADVGESEDDYMFRIALPGVK--RDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSI  219 (252)
Q Consensus       142 ~~P~~~~VDI~Etdd~yvV~adLPGV~--KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R  219 (252)
                      ..|   ...|..+++.++|.+-+|-++  ..++++.  | +++.+...+                          -.|.-
T Consensus        16 iTP---~F~itQDdefv~I~I~~p~ir~~a~~~ei~--v-d~~~F~F~~--------------------------~PYyL   63 (115)
T 3eud_A           16 ITP---RFSITQDEEFIFLKIFISNIRFSAVGLEII--I-QENMIIFHL--------------------------SPYYL   63 (115)
T ss_dssp             BCC---CEEEEECSSEEEEEEECCSCCCCSSSCEEE--E-ETTEEEEEE--------------------------TTEEE
T ss_pred             eCC---cEEEEECCCEEEEEEEcCceecccCccEEE--E-eCCEEEEec--------------------------CCeEE
Confidence            456   788999999999999999987  7899998  7 566666552                          26889


Q ss_pred             EEECCCCc-ccCccEEEcc-CCcEEEEEEecccC
Q 025484          220 TINLPGPV-DPQQFSANFG-FDGILEGTVKKQKH  251 (252)
Q Consensus       220 ~I~LP~~V-D~dkIkAsy~-~nGVLtItLPK~e~  251 (252)
                      ++.||..| +.+..+|+|+ ++|.++|+|||..+
T Consensus        64 RL~lP~~vved~~~~A~YD~d~g~~~v~lpK~~~   97 (115)
T 3eud_A           64 RLRFPHELIDDERSTAQYDSKDECINVKVAKLNK   97 (115)
T ss_dssp             EEECSSCEECSTTCEEEEETTTTEEEEEEEESST
T ss_pred             EEecCcceecCCCcceEEeCCCcEEEEEEcCCcC
Confidence            99999998 6688899994 37999999999764

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=0.00076  Score=53.74  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=66.6

Q ss_pred             eeeEEEeCCEEEEEEEeCCC---CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEE-C
Q 025484          148 KADVGESEDDYMFRIALPGV---KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITIN-L  223 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV---~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~-L  223 (252)
                      ..+++.+.+.+.|.+.+||+   .++++.|.  + ..+.|.|+..   +.     .+             ..|.-.+. |
T Consensus        22 ~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~--~-~~~~l~v~~~---~~-----~~-------------~~y~~~~~~L   77 (127)
T 1x5m_A           22 NYGWDQSDKFVKIYITLTGVHQVPTENVQVH--F-TERSFDLLVK---NL-----NG-------------KSYSMIVNNL   77 (127)
T ss_dssp             SCEEEEETTEEEEEEECTTTTTSCTTSEEEE--E-CSSEEEEEEC---SC-----SS-------------SCEEEEEECB
T ss_pred             EEEEEcCCCEEEEEEEeCCCCcCCccccEEE--E-EcCEEEEEEE---cC-----CC-------------CcEEEEhHHh
Confidence            68999999999999999999   89999999  7 6889999853   11     11             14677775 9


Q ss_pred             CCCcccCccEEEccCCcEEEEEEecccC
Q 025484          224 PGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       224 P~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      -..|++++-+.+. ..+-++|+|.|+++
T Consensus        78 ~~~I~~e~S~~~v-~~~kVei~L~K~~~  104 (127)
T 1x5m_A           78 LKPISVEGSSKKV-KTDTVLILCRKKVE  104 (127)
T ss_dssp             SSCCCTTTCEEEE-ETTEEEEEEECSSS
T ss_pred             cCccCcccCEEEE-eCCEEEEEEEECCC
Confidence            9999999999999 78999999999864

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.56  E-value=0.00078  Score=54.93  Aligned_cols=88  Identities=17%  Similarity=0.251  Sum_probs=68.6

Q ss_pred             eeeEEEe-CCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCc---cEEEEEEC
Q 025484          148 KADVGES-EDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAG---PFSITINL  223 (252)
Q Consensus       148 ~VDI~Et-dd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G---~F~R~I~L  223 (252)
                      ..|++++ .+.+.|.+.++|+.+++++|.  + ..+.|.++.....+. ....+..           .|   .|.-.+.|
T Consensus        21 r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~--f-~~~~l~v~~~~~~~~-~l~~~~a-----------~g~~~~y~~~~~L   85 (134)
T 1wh0_A           21 KNDSYEKGPDSVVVHVYVKEICRDTSRVL--F-REQDFTLIFQTRDGN-FLRLHPG-----------CGPHTTFRWQVKL   85 (134)
T ss_dssp             CEEEEEETTTEEEEEEECCSBCTTSCEEE--E-CSSEEEEEECBCCHH-HHHHSTT-----------CCTTSCEEEEEEB
T ss_pred             CeEEEcCCCCEEEEEEEeCCCCcccCEEE--E-ECCEEEEEEEcCCCc-ccccccc-----------cCcceeEEEeccc
Confidence            7999999 999999999999999999999  7 788999985421000 0000000           12   67888899


Q ss_pred             CCCcccCccEEEccCCcEEEEEEecccC
Q 025484          224 PGPVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       224 P~~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      -..|++++-+.+. ..+-++|+|.|++.
T Consensus        86 ~~~I~pe~S~~~v-~~~kIeI~L~K~e~  112 (134)
T 1wh0_A           86 RNLIEPEQCTFCF-TASRIDICLRKRQS  112 (134)
T ss_dssp             SSCEEEEEEEEEE-CSSEEEEEEEESSS
T ss_pred             cccCCchhCEEEE-eCCEEEEEEEECCC
Confidence            9999999999999 78999999999864

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.55  E-value=0.0014  Score=52.07  Aligned_cols=79  Identities=13%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             eeeEEEeCCEEEEEEEeC-CC-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          148 KADVGESEDDYMFRIALP-GV-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-GV-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      .+.++.+.+.+.|.+.|| |+ +++||+|.  + ..+.|.+...   +.     .+             ..+.-...|..
T Consensus        21 ~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~--i-~~~~l~v~~~---~~-----~~-------------~~~~~~~~L~~   76 (124)
T 1wgv_A           21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVA--L-SSSSIRVAML---EE-----NG-------------ERVLMEGKLTH   76 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEE--E-CSSEEEEEEE---CS-----SS-------------EEEEEEEEBSS
T ss_pred             cEEEEEcccEEEEEEEcCCCCCchhheEEE--E-EcCEEEEEEE---cc-----CC-------------CceEEcccccC
Confidence            799999999999999999 88 89999999  7 7899999853   10     01             12335567999


Q ss_pred             CcccCccEEEccCCc-EEEEEEecccC
Q 025484          226 PVDPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       226 ~VD~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      .|+++.-+-++ .+| .|+|+|-|++.
T Consensus        77 ~I~~e~S~w~i-~~~k~v~i~L~K~~~  102 (124)
T 1wgv_A           77 KINTESSLWSL-EPGKCVLVNLSKVGE  102 (124)
T ss_dssp             CBCTTTCEEEE-CTTSEEEEEECBSSS
T ss_pred             cCCCcCCEEEE-eCCCEEEEEEEECCC
Confidence            99999999999 787 49999999753

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=97.44  E-value=0.00039  Score=55.64  Aligned_cols=76  Identities=12%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             eeeEEEeCCEEEEEEEeC-C--CCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECC
Q 025484          148 KADVGESEDDYMFRIALP-G--VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLP  224 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-G--V~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP  224 (252)
                      .+.++.+.+.+.|.+.|| |  ++++|+.|.  + ..+.|.|..+   |.       .              +.-...|.
T Consensus         9 ~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~--i-~~~~l~v~~k---g~-------~--------------~~~~~~L~   61 (131)
T 1wfi_A            9 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVD--I-QRRHLRVGLK---GQ-------P--------------PVVDGELY   61 (131)
T ss_dssp             SSEEEECSSEEEEEECCCCSSCCCTTSEEEE--E-ETTEEEEEET---TS-------C--------------CSBCSCBS
T ss_pred             cEEEEecCCEEEEEEECCCCCcccccceEEE--E-eCCEEEEEEC---Cc-------e--------------EEEecccc
Confidence            789999999999999999 6  899999999  7 6889999842   21       0              11223488


Q ss_pred             CCcccCccEEEccCCc-EEEEEEecccC
Q 025484          225 GPVDPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       225 ~~VD~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      ..|+++.-.-+. .+| .|.|+|-|+++
T Consensus        62 ~~I~~e~s~w~i-~~~k~v~i~L~K~~~   88 (131)
T 1wfi_A           62 NEVKVEESSWLI-EDGKVVTVHLEKINK   88 (131)
T ss_dssp             SCBCSTTCEEEE-ETTTEEEEEEEBSSS
T ss_pred             cccccccCEEEE-cCCCEEEEEEEECCC
Confidence            899999999999 888 89999999864

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=97.43  E-value=0.00015  Score=67.82  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=54.0

Q ss_pred             EEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC-ccEEE
Q 025484          157 DYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ-QFSAN  235 (252)
Q Consensus       157 ~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d-kIkAs  235 (252)
                      .|.+.+.|||++|++|++.  - .++.|+|+                          .|.|+|.|.||...--- -..|+
T Consensus       306 ~~~~~l~lP~~~~~~~~l~--~-~gdeL~v~--------------------------~g~~rR~i~LP~~L~~~~v~~A~  356 (374)
T 3igf_A          306 NRQVRLFLPGFDKKQVKLT--Q-YGPEVTVE--------------------------AGDQRRNIFLPPALSGRPITGAK  356 (374)
T ss_dssp             TTEEEEECTTCCGGGCEEE--E-ETTEEEEE--------------------------ETTEEEEEECCTTTTTCCEEEEE
T ss_pred             cEEEEEECCCCCHHHeEEE--E-ECCeEEEE--------------------------ECCEeecccCCHHHcCCCccccE
Confidence            7999999999999999999  6 68899999                          27899999999876543 46899


Q ss_pred             ccCCcEEEEEEec
Q 025484          236 FGFDGILEGTVKK  248 (252)
Q Consensus       236 y~~nGVLtItLPK  248 (252)
                      | +||.|.|++-.
T Consensus       357 ~-~~~~L~i~~~~  368 (374)
T 3igf_A          357 F-QNNYLIISFLE  368 (374)
T ss_dssp             E-ETTEEEEEECC
T ss_pred             E-ECCEEEEEEeh
Confidence            9 99999999854

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.21  E-value=0.0023  Score=50.75  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             eeeEEEeCCEEEEEEEeC-C--CCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECC
Q 025484          148 KADVGESEDDYMFRIALP-G--VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLP  224 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-G--V~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP  224 (252)
                      ...+..+.+.+.|.+.|| |  +++.|+.|.  + ..+.|.|..+   |.                     .+.-...|.
T Consensus        18 ~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~--i-~~~~l~v~~k---g~---------------------~~~~~g~L~   70 (121)
T 3qor_A           18 NYRWTQTLSELDLAVPFCVNFRLKGKDMVVD--I-QRRHLRVGLK---GQ---------------------PAIIDGELY   70 (121)
T ss_dssp             SCEEEECSSEEEEEEECCCSSCCCGGGEEEE--E-ETTEEEEEET---TS---------------------CCSEEEEBS
T ss_pred             CEEEEEccceEEEEEECCCCCcccccceEEE--E-EcCEEEEEEc---Cc---------------------ceEEecccc
Confidence            788999999999999999 4  799999999  7 6788988742   21                     122345689


Q ss_pred             CCcccCccEEEccCCc-EEEEEEecccC
Q 025484          225 GPVDPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       225 ~~VD~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      ..|+++....++ ++| .|.|+|-|++.
T Consensus        71 ~~I~~deS~w~i-~~~~~i~i~L~K~~~   97 (121)
T 3qor_A           71 NEVKVEESSWLI-ADGAVVTVHLEKINK   97 (121)
T ss_dssp             SCBCGGGCEEEE-ETTTEEEEEEEBSSS
T ss_pred             ccccccccEEEE-cCCCEEEEEEEECCC
Confidence            999999999999 888 99999999853

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=97.12  E-value=0.0028  Score=50.73  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             eeeEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484          148 KADVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP  226 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~  226 (252)
                      .+.++.+.+.+.|.+.|| |++++++.|.  + ..+.|.|...   |.                     . .-...|...
T Consensus         6 ~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~--i-~~~~l~v~~~---g~---------------------~-~~~~~L~~~   57 (131)
T 2o30_A            6 KYTWDQELNEINIQFPVTGDADSSAIKIR--M-VGKKICVKNQ---GE---------------------I-VIDGELLHE   57 (131)
T ss_dssp             CCEEEEETTEEEEEEECC---CCSCEEEE--E-ETTEEEEEET---TE---------------------E-EEEEEBSSC
T ss_pred             cEEEEecCCEEEEEEECCCCCCccceEEE--E-ECCEEEEEEC---CE---------------------e-eEccccccc
Confidence            789999999999999996 9999999999  7 6889999842   21                     1 233468899


Q ss_pred             cccCccEEEccCCcEEEEEEeccc
Q 025484          227 VDPQQFSANFGFDGILEGTVKKQK  250 (252)
Q Consensus       227 VD~dkIkAsy~~nGVLtItLPK~e  250 (252)
                      |+++.-..++ .+|-|+|+|-|++
T Consensus        58 I~~e~S~w~i-~~~kv~i~L~K~~   80 (131)
T 2o30_A           58 VDVSSLWWVI-NGDVVDVNVTKKR   80 (131)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEEESS
T ss_pred             cccccCEEEE-eCCEEEEEEEECC
Confidence            9999999999 8888999999974

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=97.04  E-value=0.0026  Score=50.59  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=64.2

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      .++++.+.+.+.|.+.+|++  +++.|.  + ..+.|.+++...       .++             ..|.-.+.|-..|
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~--~-~~~~l~~~~~~~-------~~~-------------~~y~~~l~L~~~I   59 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVEDS--KDVNVN--F-EKSKLTFSCLGG-------SDN-------------FKHLNEIDLFHCI   59 (125)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEE--E-ETTEEEEEEEET-------TTT-------------EEEEEEEEBSSCE
T ss_pred             ceeEEeCCCEEEEEEEecCC--CceEEE--E-ECCEEEEEEEeC-------CCC-------------ceEEEEEEcccee
Confidence            69999999999999999996  588888  6 688999986410       011             1477888999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      ++++.+.+. .++-++|+|.|+++
T Consensus        60 ~~e~S~~~v-~~~kiei~L~K~~~   82 (125)
T 1ejf_A           60 DPNDSKHKR-TDRSILCCLRKGES   82 (125)
T ss_dssp             EEEEEEEEE-CSSCEEEEEEESST
T ss_pred             ccccCEEEE-CCCEEEEEEEECCC
Confidence            999999999 78889999999863

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=96.98  E-value=0.0046  Score=51.34  Aligned_cols=75  Identities=11%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             eeeEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484          148 KADVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP  226 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~  226 (252)
                      .+.++.+.+.+.|.+.|| |+++.||.|.  + ..+.|.|+.+   |+                     . .-...|...
T Consensus        15 ~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~--i-~~~~L~v~~k---g~---------------------~-~l~g~L~~~   66 (157)
T 2rh0_A           15 WGQWYQTLEEVFIEVQVPPGTRAQDIQCG--L-QSRHVALAVG---GR---------------------E-ILKGKLFDS   66 (157)
T ss_dssp             SEEEEECSSEEEEEEECCTTCCGGGEEEE--E-CSSEEEEEET---TE---------------------E-EEEEEBSSC
T ss_pred             cEEEEecCCEEEEEEECCCCCcccceEEE--E-ecCEEEEEEC---CE---------------------E-EEeeccccc
Confidence            789999999999999998 9999999999  8 7899999842   21                     0 133568899


Q ss_pred             cccCccEEEccCCc-EEEEEEecccC
Q 025484          227 VDPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       227 VD~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      |+++.-..+. .+| +|.|+|-|++.
T Consensus        67 I~~eeS~w~i-~~~k~v~I~L~K~~~   91 (157)
T 2rh0_A           67 TIADEGTWTL-EDRKMVRIVLTKTKR   91 (157)
T ss_dssp             BCGGGCEEEE-ECCCEEEEEEEBSSC
T ss_pred             cCccccEEEE-cCCcEEEEEEEEcCC
Confidence            9999999999 777 59999999863

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=96.67  E-value=0.0044  Score=51.23  Aligned_cols=76  Identities=16%  Similarity=0.247  Sum_probs=62.2

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCC-CCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDP-TGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP  226 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~-d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~  226 (252)
                      .++++.+.+.+.|.+.||++  ++++|.  + . .+.|.+++.   +.     .+             ..|.-.+.|=..
T Consensus         6 ~~~W~Qt~~~V~ltI~l~~~--~~v~V~--~-~~~~~l~~~~~---~~-----~~-------------~~y~~~l~L~~~   59 (150)
T 2kmw_A            6 EVLWAQRSDKVYLTVALPDA--KDISVK--C-EPQGLFSFSAL---GA-----QG-------------ERFEFSLELYGK   59 (150)
T ss_dssp             CEEEEECSSEEEEEECCSSE--EEEEEC--C-CTTEEEEEEEE---TT-----TT-------------EEEEEEEEBSSC
T ss_pred             cEEEEeCCCEEEEEEEeCCC--CceEEE--E-ecCCEEEEEEE---cC-----CC-------------ceEEEEeEhhhc
Confidence            79999999999999999998  478888  7 6 688999964   11     11             147788889999


Q ss_pred             cccCccEEEccCCcEEEEEEecccC
Q 025484          227 VDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       227 VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      |+++ .+.+. ...-++|+|.|+++
T Consensus        60 Idpe-S~~~v-~~~kIei~L~K~e~   82 (150)
T 2kmw_A           60 IMTE-YRKNV-GLRNIIFSIQKEER   82 (150)
T ss_dssp             EEEE-EEEEE-ESSSEEEEEEECCS
T ss_pred             cccc-ceEEe-cCCEEEEEEEECCC
Confidence            9999 88888 67779999999864

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.00081  Score=54.44  Aligned_cols=82  Identities=10%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             eeeEEEeCCE-------EEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEE
Q 025484          148 KADVGESEDD-------YMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSIT  220 (252)
Q Consensus       148 ~VDI~Etdd~-------yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~  220 (252)
                      .++++.+.+.       +.|.+.+|+++  +++|.  + ..+.|.+++... +.     .+.     +.    ...|.-.
T Consensus         8 ~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~--~-~~~~l~~~~~~~-~~-----~g~-----~~----~~~y~~~   67 (134)
T 2cg9_X            8 QVAWAQRSSTTDPERNYVLITVSIADCD--APELT--I-KPSYIELKAQSK-PH-----VGD-----EN----VHHYQLH   67 (134)
T ss_dssp             ---CBCCCEEECCCSSEEEEECCCSSEE--SCCCC--B-CSSEEEECCEEC----------------------CEEBCEE
T ss_pred             CEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEE--E-ECCEEEEEEecc-cc-----cCC-----cc----CceEEEE
Confidence            6888888877       99999999985  78888  7 688999985411 00     000     00    0147788


Q ss_pred             EECCCCcccCccEEEccCCcE-EEEEEeccc
Q 025484          221 INLPGPVDPQQFSANFGFDGI-LEGTVKKQK  250 (252)
Q Consensus       221 I~LP~~VD~dkIkAsy~~nGV-LtItLPK~e  250 (252)
                      +.|...|++++.+.++ .++- |+|+|.|++
T Consensus        68 l~L~~~Idpe~S~~~v-~~~~~vei~L~K~~   97 (134)
T 2cg9_X           68 IDLYKEIIPEKTMHKV-ANGQHYFLKLYKKD   97 (134)
T ss_dssp             EECSSCCCSSSEEEEE-CCC--CEEEEEECS
T ss_pred             EEChhhccccccEEEE-CCCEEEEEEEEECC
Confidence            8999999999999999 8888 999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	3e-08
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	7e-06

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 12/118 (10%)

Query: 134 TGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTG 193
           TG+   G+    +    + E +        LPGV ++D             +    +   
Sbjct: 1   TGIQISGKGFMPI---SIIEGDQHIKVIAWLPGVNKED--IILNAVGDTLEIRAKRSPLM 55

Query: 194 EKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKH 251
                +       +            TI LP  V  +  SA F  +G+L   + K + 
Sbjct: 56  ITESERIIYSEIPEE------EEIYRTIKLPATVKEENASAKFE-NGVLSVILPKAES 106

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
           + D  E+ + ++F+  LPGVK+++ +          +       +GE++  K  +  +  
Sbjct: 44  RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVV-------SGERTKEKEDKNDKWH 96

Query: 208 TQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
                 +G F     L      ++  A    +G+L  TV K +
Sbjct: 97  RVER-SSGKFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVPKAE 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.9
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.88
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.23
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	97.1
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	96.75
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	96.36
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	96.19

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.90  E-value=6.7e-24  Score=173.38  Aligned_cols=95  Identities=21%  Similarity=0.361  Sum_probs=79.1

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ++||+|++++|+|.++|||++|+||+|+  +++++.|+|+|+.+.   .....+..++..++.   +|+|+|+|.||.+|
T Consensus        44 ~~dv~e~~~~~~i~~~lPG~~~edi~v~--v~~~~~l~i~~~~~~---~~~~~~~~~~~~e~~---~~~f~r~~~LP~~v  115 (150)
T d1gmea_          44 RMDWKETPEAHVFKADLPGVKKEEVKVE--VEDGNVLVVSGERTK---EKEDKNDKWHRVERS---SGKFVRRFRLLEDA  115 (150)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEE--EETTTEEEEEECCCC---CCCCTTCEEEECCCC---CCCEEEEEECSSCC
T ss_pred             ceeEEECCCEEEEEEEeCCCccCCEEEE--EEEccceeEEEEEec---ccccccceeeeeeec---cceEEEEEECCCCe
Confidence            8999999999999999999999999999  623457899976431   112234456666666   79999999999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      |.++|+|+| +||||+|+|||.+.
T Consensus       116 d~~~i~A~~-~nGvL~I~lpK~~~  138 (150)
T d1gmea_         116 KVEEVKAGL-ENGVLTVTVPKAEV  138 (150)
T ss_dssp             CGGGCEEEE-ETTEEEEEEECCCC
T ss_pred             eeceeEEEE-ECCEEEEEEEcCCc
Confidence            999999999 99999999999753

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=3.1e-23  Score=161.67  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=79.0

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ++||+|++++|+|.++|||++++||+|+  + +++.|+|+|++...  ...+....++.++++   +|.|+|+|.||.+|
T Consensus        12 pvdi~e~~~~~~i~~~lPG~~~edi~v~--v-~~~~l~I~~~~~~~--~~~~~~~~~~~~~~~---~~~f~r~~~lP~~v   83 (115)
T d1shsa_          12 PISIIEGDQHIKVIAWLPGVNKEDIILN--A-VGDTLEIRAKRSPL--MITESERIIYSEIPE---EEEIYRTIKLPATV   83 (115)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEE--E-ETTEEEEEEECCCC--CCCTTCEEEEECSCC---CCEEEEEEECSSCB
T ss_pred             ceEEEEcCCEEEEEEECCCCCHHHEEEE--E-ECCEEEEEEEeccc--cccccccEEEEeeec---ccceEEEEecCCce
Confidence            6999999999999999999999999999  7 68999999864311  112233444444444   79999999999999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      |.++++|+| +||||+|+|||.++
T Consensus        84 d~~~i~A~~-~nGvL~I~lpK~~~  106 (115)
T d1shsa_          84 KEENASAKF-ENGVLSVILPKAES  106 (115)
T ss_dssp             CGGGCEEEE-ETTEEEEEEEBCGG
T ss_pred             eecceEEEE-ECCEEEEEEEeCCC
Confidence            999999999 99999999999753

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3e-06  Score=61.72  Aligned_cols=79  Identities=15%  Similarity=0.226  Sum_probs=67.0

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ..|++++++.+.|.+.+||+.++++.|.  + ....|.+.....        ++             -.|.-.+.|...|
T Consensus         4 ry~W~Qt~~~V~i~i~~~~~~~~~v~v~--~-~~~~l~v~~~~~--------~~-------------~~y~~~~~L~~~I   59 (92)
T d1rl1a_           4 KYDWYQTESQVVITLMIKNVQKNDVNVE--F-SEKELSALVKLP--------SG-------------EDYNLKLELLHPI   59 (92)
T ss_dssp             CEEEEECSSEEEEEECCCSCCGGGEEEE--C-SSSCEEEEEECT--------TS-------------SEEEEEECBSSCC
T ss_pred             ceeEEeCCCEEEEEEEeCCCChHheEEE--E-ecCEEEEEEEcC--------CC-------------cEEEEEEEcCccc
Confidence            5789999999999999999999999999  7 688888874311        11             1467778899999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +++..+.++ .++-|+|+|.|+++
T Consensus        60 ~p~~s~~~~-~~~kiei~L~K~~~   82 (92)
T d1rl1a_          60 IPEQSTFKV-LSTKIEIKLKKPEA   82 (92)
T ss_dssp             CGGGEEEEE-CSSSEEEEEECSSC
T ss_pred             CchhcEEEE-eCCEEEEEEEECCC
Confidence            999999999 89999999999864

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0021  Score=50.47  Aligned_cols=90  Identities=17%  Similarity=0.271  Sum_probs=68.6

Q ss_pred             eeeEEEeC-CEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecC-CCccEEEEEECCC
Q 025484          148 KADVGESE-DDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLT-PAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etd-d~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~c-p~G~F~R~I~LP~  225 (252)
                      .-|+|+++ +.++|.+-+.||.+++++|.  + .++.|+|+=....|        ..+.+...  + +.-.|.-.+.|-.
T Consensus        21 r~dwyq~~~~~V~VtI~~K~v~ke~~~V~--f-~~~sl~v~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~L~~   87 (134)
T d1wh0a_          21 KNDSYEKGPDSVVVHVYVKEICRDTSRVL--F-REQDFTLIFQTRDG--------NFLRLHPG--CGPHTTFRWQVKLRN   87 (134)
T ss_dssp             CEEEEEETTTEEEEEEECCSBCTTSCEEE--E-CSSEEEEEECBCCH--------HHHHHSTT--CCTTSCEEEEEEBSS
T ss_pred             ccceeecCCCEEEEEEEeCCCchhheEEE--E-eCCEEEEEEECCCC--------cceeeccc--cCcCeeEEEeeeccc
Confidence            57999995 79999999999999999999  6 68999998431111        00000000  0 0136889999999


Q ss_pred             CcccCccEEEccCCcEEEEEEecccC
Q 025484          226 PVDPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       226 ~VD~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      .|++++-+.+. ..+-++|+|.|+++
T Consensus        88 ~I~pe~S~~~v-~~~kiei~L~K~~~  112 (134)
T d1wh0a_          88 LIEPEQCTFCF-TASRIDICLRKRQS  112 (134)
T ss_dssp             CEEEEEEEEEE-CSSEEEEEEEESSS
T ss_pred             ccChhHcEEEe-CCCEEEEEEEeCCC
Confidence            99999999999 89999999999764

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0024  Score=47.38  Aligned_cols=78  Identities=14%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484          148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV  227 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V  227 (252)
                      ++.++.+.+.+.|.+.+||++  +++|.  + +.+.|.+++...       ..+             ..|.-.+.|-..|
T Consensus         5 ~~~W~Qt~~~V~i~I~v~~~~--~~~v~--i-~~~~l~~~~~~~-------~~~-------------~~y~l~~~L~~~I   59 (110)
T d1ejfa_           5 SAKWYDRRDYVFIEFCVEDSK--DVNVN--F-EKSKLTFSCLGG-------SDN-------------FKHLNEIDLFHCI   59 (110)
T ss_dssp             CEEEEECSSEEEEEECCTTEE--EEEEE--E-ETTEEEEEEEET-------TTT-------------EEEEEEEEBSSCE
T ss_pred             CcEEEECCCEEEEEEEeCCCC--CceEE--E-EeceEEEEEEec-------CCC-------------ceEEEEEEcccCc
Confidence            588999999999999999875  55555  4 467788875411       111             1466778899999


Q ss_pred             ccCccEEEccCCcEEEEEEecccC
Q 025484          228 DPQQFSANFGFDGILEGTVKKQKH  251 (252)
Q Consensus       228 D~dkIkAsy~~nGVLtItLPK~e~  251 (252)
                      +++..+.++ .++-|+|+|.|+++
T Consensus        60 ~~~~s~~~v-~~~kiei~L~K~~~   82 (110)
T d1ejfa_          60 DPNDSKHKR-TDRSILCCLRKGES   82 (110)
T ss_dssp             EEEEEEEEE-CSSCEEEEEEESST
T ss_pred             ccCccEEEE-eCCEEEEEEEEcCC
Confidence            999999999 89999999999764

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.038  Score=41.47  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             eeeEEEeCCEEEEEEEeCC-C-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484          148 KADVGESEDDYMFRIALPG-V-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG  225 (252)
Q Consensus       148 ~VDI~Etdd~yvV~adLPG-V-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~  225 (252)
                      ...+.++.+.+.|.+.||. . +.+||.|+  + ....|.|+-.   +.     ..             ..+.-...|..
T Consensus        21 ~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~--~-~~~~l~v~v~---~~-----~~-------------~~~~l~g~L~~   76 (124)
T d1wgva_          21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVA--L-SSSSIRVAML---EE-----NG-------------ERVLMEGKLTH   76 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEE--E-CSSEEEEEEE---CS-----SS-------------EEEEEEEEBSS
T ss_pred             CeEEEeECCEEEEEEEeCCCCcchhhEEEE--E-EeCEEEEEEe---cc-----CC-------------cceEEeCcccC
Confidence            6789999999999999984 3 45899999  7 6788888732   10     11             12344567999


Q ss_pred             CcccCccEEEccCCc-EEEEEEecccC
Q 025484          226 PVDPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       226 ~VD~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                      .|+++...-++ +++ +|.+.+.|.+.
T Consensus        77 ~I~~deS~w~i-~~~~~~i~~lkK~~~  102 (124)
T d1wgva_          77 KINTESSLWSL-EPGKCVLVNLSKVGE  102 (124)
T ss_dssp             CBCTTTCEEEE-CTTSEEEEEECBSSS
T ss_pred             cccccccEEEE-eCCCEEEEEEEecCC
Confidence            99999999999 777 66667777653

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.02  Score=43.94  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             CCCCCCCceeeEEEeCCEEEEEEEeC---CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCcc
Q 025484          140 GQVGPHVGKADVGESEDDYMFRIALP---GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGP  216 (252)
Q Consensus       140 ~~~~P~~~~VDI~Etdd~yvV~adLP---GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~  216 (252)
                      |..+|   ...+.++.+.+.|.+.+|   |++++||.|+  + ..+.|.|.-+   +.       ..+    .    .| 
T Consensus         4 G~~~~---~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~--i-~~~~l~v~v~---~~-------~~l----l----~g-   58 (131)
T d1wfia_           4 GSSGP---NYRWTQTLAELDLAVPFRVSFRLKGKDVVVD--I-QRRHLRVGLK---GQ-------PPV----V----DG-   58 (131)
T ss_dssp             SSSCC---SSEEEECSSEEEEEECCCCSSCCCTTSEEEE--E-ETTEEEEEET---TS-------CCS----B----CS-
T ss_pred             CCCCC---CeEEEeeCCEEEEEEEcCCCCCcchhhEEEE--e-eCCEEEEEEc---CC-------cee----e----cc-
Confidence            44456   788999999999998764   7899999999  7 6889988732   11       000    0    12 


Q ss_pred             EEEEEECCCCcccCccEEEccCCc-EEEEEEecccC
Q 025484          217 FSITINLPGPVDPQQFSANFGFDG-ILEGTVKKQKH  251 (252)
Q Consensus       217 F~R~I~LP~~VD~dkIkAsy~~nG-VLtItLPK~e~  251 (252)
                           .|...|+++...-++ ++| +|.|+|-|+..
T Consensus        59 -----~L~~~I~~des~W~i-ed~~~l~i~L~K~~~   88 (131)
T d1wfia_          59 -----ELYNEVKVEESSWLI-EDGKVVTVHLEKINK   88 (131)
T ss_dssp             -----CBSSCBCSTTCEEEE-ETTTEEEEEEEBSSS
T ss_pred             -----cccCcccccccEEEE-eCCCEEEEEEEECCC
Confidence                 477899999998999 665 89999999753