Citrus Sinensis ID: 025525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEcccccccccEEEccccccccccccccccccccccccccEEccEEEEEEEEEEcccccccEEEEEEEEEEcccEEEEEEccEEEccccEEEEEcccEEEEEEEEEEEEEEEEEcEEEEEEEEEccccccHHHHcccccccccccccccHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccccccccccccccccccccccccccccccEccccccccccccccccccccEEEcccccccccccccEEEEEEEEEEccccccccEEEEcccccccccccccccccccccccHHHHEcccccEEEEEEccccccccEEEEEEEEEEccccEEEEEccEEEcccEEEEEEcccccEcccEEEEEEEEEEcccEEEEEEEEcccccccHHHccccccccccccccHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
MACSSAALRTISSASVKlanstsptksssilvpfklnnpflitqcphlqaatscnftvpkrsftcrsqanssddprptkvqELHVYEinerdrgspaylrlsqkpvnslgdlvpfsnklytgdlqKRLGITAGLCIlienkpekkgdrYEAIYSFYfgdyghiavqgpyltyedtYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGikdlpevllgkpvdphpgvepspaakacepgaaidnftn
Flexible Loop (DISEMBL)
MACSSAALRTissasvklanstsptksssiLVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCrsqanssddprptkvQELHVYEinerdrgspayLRLSQkpvnslgdlvPFSNKLYTGDLQKRLGITAGLCILienkpekkgdRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEpspaakacepgaaidnftn
Low Complexity Region (SEG)
MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN
Disordered region (IsUnstruct)
*****************************ILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSF*********************VY***********YLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLG*****************************
Disordered Region (DISOPRED)
**********************************************************************************LHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVD*******************ID****
Disordered Region (DISEMBL)
********RTISSAS************SSILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTC************TKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN
Disordered Region (DISPRO)
**************************************************************************PRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSP****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q93ZC5	254	Allene oxide cyclase 4, c	yes	no	0.828	0.818	0.635	4e-72
Q9LS02	253	Allene oxide cyclase 2, c	no	no	0.968	0.960	0.544	1e-71
Q9LS01	258	Allene oxide cyclase 3, c	no	no	0.988	0.961	0.555	6e-71
Q9LS03	254	Allene oxide cyclase 1, c	no	no	0.992	0.980	0.546	3e-70

>sp|Q93ZC5|AOC4_ARATH Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1

 Score =  271 bits (693), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/217 (63%), Positives = 165/217 (76%), Gaps = 9/217 (4%)

Query: 37  NNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSP 96
           N+P L T+     ++T   F        C S +N  D  RPTK+QEL+VYE NE DR SP
Sbjct: 45  NSPGLSTRARSTTSSTGGFFRT-----ICSSSSN--DYSRPTKIQELNVYEFNEGDRNSP 97

Query: 97  AYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSF 155
           A L+L +KP    LGDLVPF+NKLYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSF
Sbjct: 98  AVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSF 157

Query: 156 YFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-K 214
           YFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  
Sbjct: 158 YFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAA 217

Query: 215 DLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           DLP  L GK V+P   V+P+  A+A +PGA I NFTN
Sbjct: 218 DLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: 6

>sp|Q9LS02|AOC2_ARATH Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1

 Score =  269 bits (688), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 181/261 (69%), Gaps = 18/261 (6%)

Query: 1   MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPK 60
           MA S+ +L++IS  ++   +       SS+L   K      I+       +   +F+ P 
Sbjct: 1   MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGIS-------SNGSDFSYPS 53

Query: 61  RSFTCR---------SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGD 111
            SFT +         SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGD
Sbjct: 54  -SFTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGD 112

Query: 112 LVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLT 171
           LVPF+NKLYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLT
Sbjct: 113 LVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLT 172

Query: 172 YEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPG 230
           YED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   
Sbjct: 173 YEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKD 232

Query: 231 VEPSPAAKACEPGAAIDNFTN 251
           +EP+P AKA EP   I N+TN
Sbjct: 233 IEPAPEAKALEPSGVISNYTN 253

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 6

>sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1

 Score =  267 bits (682), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 145/261 (55%), Positives = 181/261 (69%), Gaps = 13/261 (4%)

Query: 1   MACSSAALRTISSASVKLANSTSPTKSS--SILVPFK--LNNPFLITQCPHLQAATSC-- 54
           MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P   + +    
Sbjct: 1   MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTT 59

Query: 55  --NFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGD 111
             N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGD
Sbjct: 60  SKNLNVTRAFF--WNWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGD 117

Query: 112 LVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLT 171
           LVPF+NKLYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLT
Sbjct: 118 LVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLT 177

Query: 172 YEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPG 230
           YEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   
Sbjct: 178 YEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKD 237

Query: 231 VEPSPAAKACEPGAAIDNFTN 251
           V+P+P AKA EP   I NFTN
Sbjct: 238 VKPAPEAKAMEPSGVISNFTN 258

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 6

>sp|Q9LS03|AOC1_ARATH Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/256 (54%), Positives = 182/256 (71%), Gaps = 7/256 (2%)

Query: 1   MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPK 60
           MA S+ +L++IS  ++   + +     SS+L   K    F I+      +++  +FT PK
Sbjct: 1   MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSN-GPGSSSPTSFT-PK 58

Query: 61  RSFT----CRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFS 116
           +  T          ++++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+
Sbjct: 59  KKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFT 118

Query: 117 NKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTY 176
           NKLYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++
Sbjct: 119 NKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSF 178

Query: 177 LAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSP 235
           LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P
Sbjct: 179 LAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAP 238

Query: 236 AAKACEPGAAIDNFTN 251
            AKA +P   + NFTN
Sbjct: 239 EAKALKPSGVVSNFTN 254

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
16416376	256	mangrin [Bruguiera sexangula]	0.996	0.976	0.731	2e-99
118485832	251	unknown [Populus trichocarpa]	0.880	0.880	0.804	1e-98
118484502	251	unknown [Populus trichocarpa]	0.880	0.880	0.804	1e-98
268537560	250	allene oxide cyclase [Jatropha curcas]	0.988	0.992	0.715	2e-98
118489932	251	unknown [Populus trichocarpa x Populus d	0.880	0.880	0.795	3e-98
224079844	245	predicted protein [Populus trichocarpa]	0.872	0.893	0.802	3e-97
359488393	251	PREDICTED: allene oxide cyclase 4, chlor	0.980	0.980	0.703	5e-95
324330444	245	allene oxide cyclase [Camellia sinensis]	0.972	0.995	0.742	5e-95
255579071	263	Allene oxide cyclase 4, chloroplast prec	0.976	0.931	0.690	5e-94
388501078	248	unknown [Lotus japonicus]	0.960	0.971	0.689	4e-92

>gi|16416376|dbj|BAB21610.2| mangrin [Bruguiera sexangula]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/257 (73%), Positives = 213/257 (82%), Gaps = 7/257 (2%)

Query: 1   MACSSAALRTISSASVKL---ANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFT 57
           MA SS+ALRT+SS SVK+   A S S T  +  ++PFK  NP L+T+     +  S   +
Sbjct: 1   MALSSSALRTVSS-SVKVVGPARSKSATVPTQTVLPFKFTNPSLLTRSLSFSSKGSSFDS 59

Query: 58  --VPKRSFTCRSQANSSDDP-RPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVP 114
             VPKRSF+CRSQA  SDD  RPTKVQEL VYE+NERDRGSPA LRLSQKPVNSLGDLVP
Sbjct: 60  FSVPKRSFSCRSQATPSDDASRPTKVQELCVYEMNERDRGSPAVLRLSQKPVNSLGDLVP 119

Query: 115 FSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYED 174
           FSNK+Y+GDLQKR+G+TAG+CILI+NKPEKKGDR+EAIYSFYFG YGHIAVQG YLTYED
Sbjct: 120 FSNKVYSGDLQKRIGVTAGICILIQNKPEKKGDRFEAIYSFYFGGYGHIAVQGAYLTYED 179

Query: 175 TYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPS 234
           T+LAVTGGSGIFEGV GQVKLQQLV+PFKLFYTFYL+GIKDLPE L  KPV+PHP VEP 
Sbjct: 180 THLAVTGGSGIFEGVSGQVKLQQLVYPFKLFYTFYLRGIKDLPEELTKKPVEPHPSVEPM 239

Query: 235 PAAKACEPGAAIDNFTN 251
           PAAKACEP A + NFT+
Sbjct: 240 PAAKACEPHAVVANFTD 256

Source: Bruguiera sexangula

Species: Bruguiera sexangula

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485832|gb|ABK94763.1| unknown [Populus trichocarpa]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 199/230 (86%), Gaps = 9/230 (3%)

Query: 24  PTKSSSILVPFKL-NNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQE 82
           PTK S  L+ FKL  NP L+T+   L      NF+  KRSF+C+SQA S++D RPTKVQE
Sbjct: 29  PTKPS--LLSFKLAQNPCLLTKSTSLG-----NFSGTKRSFSCKSQAASTEDSRPTKVQE 81

Query: 83  LHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKP 142
           L VYEINERDRGSPAYLRLSQK VNSLGDLVPFSNKLYTGDLQKR+GITAGLC+LI+NKP
Sbjct: 82  LSVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYTGDLQKRVGITAGLCVLIQNKP 141

Query: 143 EKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 202
           EKKGDRYEAIYSFYFGDYGHIAVQG YLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF
Sbjct: 142 EKKGDRYEAIYSFYFGDYGHIAVQGSYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 201

Query: 203 KLFYTFYLKGIK-DLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           KLFYTFYLKG+K DLPE LLGK V+P P VEPSPAAKACEP A I N+TN
Sbjct: 202 KLFYTFYLKGLKADLPEELLGKAVEPSPAVEPSPAAKACEPHAVIANYTN 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484502|gb|ABK94126.1| unknown [Populus trichocarpa]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 199/230 (86%), Gaps = 9/230 (3%)

Query: 24  PTKSSSILVPFKL-NNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQE 82
           PTK S  L+ FKL  NP L+T+   L      NF+  KRSF+C+SQA S++D RPTKVQE
Sbjct: 29  PTKPS--LLSFKLAQNPCLLTKTTSLG-----NFSGTKRSFSCKSQAASTEDSRPTKVQE 81

Query: 83  LHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKP 142
           L VYEINERDRGSPAYLRLSQK VNSLGDLVPFSNKLYTGDLQKR+GITAGLC+LI+NKP
Sbjct: 82  LSVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYTGDLQKRVGITAGLCVLIQNKP 141

Query: 143 EKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 202
           EKKGDRYEAIYSFYFGDYGHIAVQG YLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF
Sbjct: 142 EKKGDRYEAIYSFYFGDYGHIAVQGSYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 201

Query: 203 KLFYTFYLKGIK-DLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           KLFYTFYLKG+K DLPE LLGK V+P P VEPSPAAKACEP A I N+TN
Sbjct: 202 KLFYTFYLKGLKADLPEELLGKAVEPSPAVEPSPAAKACEPHAVIANYTN 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268537560|gb|ACZ06580.1| allene oxide cyclase [Jatropha curcas]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/253 (71%), Positives = 211/253 (83%), Gaps = 5/253 (1%)

Query: 1   MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLI--TQCPHLQAATSCNFTV 58
           MAC+++ L+T ++   +L+N TSPT + S+ +P    NP L   ++        +  F+V
Sbjct: 1   MACTTSPLKT-AAYFARLSNKTSPTITKSLRLPSMPANPSLSFSSKTSIFNNRINNTFSV 59

Query: 59  PKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNK 118
           PKRSF+C+SQA  SDD  P+K QELHVYEINERDRGSPAYLRLSQK VNSLGDLVPFSNK
Sbjct: 60  PKRSFSCKSQA--SDDSTPSKFQELHVYEINERDRGSPAYLRLSQKEVNSLGDLVPFSNK 117

Query: 119 LYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLA 178
           LYTGDLQKR+GITAG+CILIE+K EKKGDRYEAIYSFYFGDYGHIAVQG YLTYED+YLA
Sbjct: 118 LYTGDLQKRIGITAGICILIEHKAEKKGDRYEAIYSFYFGDYGHIAVQGAYLTYEDSYLA 177

Query: 179 VTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAK 238
           VTGG+GIFEGV GQVKL+QL+FPFKLFYTFYLKGIKDLPE L+GKPV+PHP VEP P AK
Sbjct: 178 VTGGTGIFEGVSGQVKLRQLIFPFKLFYTFYLKGIKDLPEELVGKPVEPHPAVEPHPDAK 237

Query: 239 ACEPGAAIDNFTN 251
           AC+P AA+ NFT+
Sbjct: 238 ACQPHAALVNFTD 250

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489932|gb|ABK96763.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/230 (79%), Positives = 199/230 (86%), Gaps = 9/230 (3%)

Query: 24  PTKSSSILVPFKL-NNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQE 82
           PTK+S  L+ FKL  NP L+T+   L + +  N     RSF+C+SQA S++D RPTKVQE
Sbjct: 29  PTKAS--LLSFKLAQNPCLLTKSTSLGSFSGTN-----RSFSCKSQAASTEDSRPTKVQE 81

Query: 83  LHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKP 142
           L VYEINERDRGSPAYLRLSQK VNSLGDLVPFSNKLYTGDLQKR+GITAGLC+LI+NKP
Sbjct: 82  LSVYEINERDRGSPAYLRLSQKAVNSLGDLVPFSNKLYTGDLQKRVGITAGLCVLIQNKP 141

Query: 143 EKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 202
           EKKGDRYEAIYSFYFGDYGHIAVQG YLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF
Sbjct: 142 EKKGDRYEAIYSFYFGDYGHIAVQGSYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 201

Query: 203 KLFYTFYLKGIK-DLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           KLFYTFYLKG+K DLPE LLGK V+P P VEPSPAAKACEP A I N+TN
Sbjct: 202 KLFYTFYLKGLKADLPEELLGKAVEPSPAVEPSPAAKACEPHAVIANYTN 251

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079844|ref|XP_002305951.1| predicted protein [Populus trichocarpa] gi|222848915|gb|EEE86462.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/228 (80%), Positives = 197/228 (86%), Gaps = 9/228 (3%)

Query: 24  PTKSSSILVPFKL-NNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQE 82
           PTK S  L+ FKL  NP L+T+   L      NF+  KRSF+C+SQA S++D RPTKVQE
Sbjct: 25  PTKPS--LLSFKLAQNPCLLTKSTSLG-----NFSGTKRSFSCKSQAASTEDSRPTKVQE 77

Query: 83  LHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKP 142
           L VYEINERDRGSPAYLRLSQK VNSLGDLVPFSNKLYTGDLQKR+GITAGLC+LI+NKP
Sbjct: 78  LSVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYTGDLQKRVGITAGLCVLIQNKP 137

Query: 143 EKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 202
           EKKGDRYEAIYSFYFGDYGHIAVQG YLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF
Sbjct: 138 EKKGDRYEAIYSFYFGDYGHIAVQGSYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF 197

Query: 203 KLFYTFYLKGIK-DLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNF 249
           KLFYTFYLKG+K DLPE LLGK V+P P VEPSPAAKACEP A I N+
Sbjct: 198 KLFYTFYLKGLKADLPEELLGKAVEPSPAVEPSPAAKACEPHAVIANY 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488393|ref|XP_003633753.1| PREDICTED: allene oxide cyclase 4, chloroplastic [Vitis vinifera] gi|298204376|emb|CBI16856.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 206/256 (80%), Gaps = 10/256 (3%)

Query: 1   MACSSAALRTISSASVKLANSTSPTKS-SSILVPFKLNNPFLITQCPHLQAATSCNFTVP 59
           MA S+ ALR  SS S KL N  S + + +  L+PFK +NP       H     S +++ P
Sbjct: 1   MASSTPALRNFSS-SFKLLNPRSVSSTPAHRLLPFKFSNP----SPSHNLTLHSTHYSFP 55

Query: 60  KR----SFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPF 115
           K     SF+C++Q++ SD PRPTKVQELHVYEINERDRGSPAYLRLSQK VNSLGDLVPF
Sbjct: 56  KPARSISFSCKAQSSPSDPPRPTKVQELHVYEINERDRGSPAYLRLSQKSVNSLGDLVPF 115

Query: 116 SNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDT 175
           SNK+YTGDL+KRLG+TAGLC+LI+N P KKGDRYEA YSFYFGDYGHI+VQG YLTYEDT
Sbjct: 116 SNKIYTGDLEKRLGVTAGLCVLIQNVPGKKGDRYEATYSFYFGDYGHISVQGAYLTYEDT 175

Query: 176 YLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSP 235
           YLA+TGGSGIFEG YGQVKLQQ+VFPFKLFYTFYLKGIK+LP  LLGKPV P P VEP+P
Sbjct: 176 YLAITGGSGIFEGAYGQVKLQQIVFPFKLFYTFYLKGIKELPADLLGKPVSPSPNVEPAP 235

Query: 236 AAKACEPGAAIDNFTN 251
           +AKACEP A I NFT+
Sbjct: 236 SAKACEPHACIANFTD 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324330444|gb|ADY38579.1| allene oxide cyclase [Camellia sinensis]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 206/252 (81%), Gaps = 8/252 (3%)

Query: 1   MACSSAALRT-ISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVP 59
           MA SSA LRT ISS+ +KL+ +TSPT+     + FK +NP L +Q   L   T+   T  
Sbjct: 1   MAASSATLRTTISSSLIKLSPTTSPTQKQ---LSFKPSNPIL-SQNLKLTTTTT---TTT 53

Query: 60  KRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKL 119
           K  FTC+SQ+N SD  RP+KVQ+L VYEINERDRGSPAYLRLSQK VNSLGDLVPF+NK+
Sbjct: 54  KGLFTCKSQSNPSDASRPSKVQQLCVYEINERDRGSPAYLRLSQKSVNSLGDLVPFTNKV 113

Query: 120 YTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAV 179
           YTGDLQKRLGITAG+CILI+N PEKKGDRYEAIYSFYFGDYGHIAVQG YLTYEDT LAV
Sbjct: 114 YTGDLQKRLGITAGICILIQNVPEKKGDRYEAIYSFYFGDYGHIAVQGSYLTYEDTCLAV 173

Query: 180 TGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKA 239
           TGGSGIFEGVYGQVKL Q++FPFKLFYTFYLKGI DLP  LLG PV P P VEPSPAAKA
Sbjct: 174 TGGSGIFEGVYGQVKLHQIIFPFKLFYTFYLKGIPDLPVELLGAPVPPSPAVEPSPAAKA 233

Query: 240 CEPGAAIDNFTN 251
           CE GA I NFTN
Sbjct: 234 CEGGATISNFTN 245

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579071|ref|XP_002530384.1| Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis] gi|223530070|gb|EEF31990.1| Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]

 Score =  350 bits (897), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 181/262 (69%), Positives = 211/262 (80%), Gaps = 17/262 (6%)

Query: 4   SSAALRTISSASV--------KLANSTSPTKSSSILVPFKLNNPFL-ITQCPHL---QAA 51
           S++++R +SS  +          + S +PTKS   L+PFK+ NP    T  P L   ++A
Sbjct: 5   STSSMRALSSMRLTKPSAAAAAASRSNAPTKS---LLPFKIANPSSPFTHNPRLLLSKSA 61

Query: 52  TSCNFTVPKRSFTCRSQANSSDD-PRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLG 110
              NF +PKRSF+C++QA  SDD  RPT+VQEL VYEINERDRGSPAYLRLSQK VNSLG
Sbjct: 62  AFNNFNLPKRSFSCKNQAAPSDDNSRPTEVQELCVYEINERDRGSPAYLRLSQKQVNSLG 121

Query: 111 DLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYL 170
           DLVPFSNKLYTGDLQ+R+GITAG+CILI+NKPE KGDRYEAIYSFYFGDYGH+AVQGPYL
Sbjct: 122 DLVPFSNKLYTGDLQQRIGITAGICILIQNKPEMKGDRYEAIYSFYFGDYGHLAVQGPYL 181

Query: 171 TYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIK-DLPEVLLGKPVDPHP 229
           T+EDTYLAVTGGSGIFEG YGQVKLQQ+VFPFKLFYTFYLKG+K DLP+ LL KP +PHP
Sbjct: 182 TFEDTYLAVTGGSGIFEGAYGQVKLQQIVFPFKLFYTFYLKGLKTDLPDELLRKPTEPHP 241

Query: 230 GVEPSPAAKACEPGAAIDNFTN 251
            VEP P AKAC+P A + NFT+
Sbjct: 242 AVEPHPDAKACQPHATVANFTD 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501078|gb|AFK38605.1| unknown [Lotus japonicus]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/258 (68%), Positives = 202/258 (78%), Gaps = 17/258 (6%)

Query: 1   MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLI-------TQCPHLQAATS 53
           MA S  +LRT++S+ +KL+N    +  S+  +    +NPFL        T  PH  ++ S
Sbjct: 1   MASSCFSLRTVASSCLKLSNLRRSSLLSTSSIT-TSSNPFLTRNLKLNTTFSPHSHSSLS 59

Query: 54  CNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLV 113
                  RSFTCRSQA  SD     KVQEL VYEINERDRGSPAYLRLSQK VNSLGDLV
Sbjct: 60  ------TRSFTCRSQAEQSDS---VKVQELSVYEINERDRGSPAYLRLSQKSVNSLGDLV 110

Query: 114 PFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYE 173
           PFSNKLY+G LQKR+GITAG+C+LIENK EKKGDRYEAIYSFYFGDYGHI+VQGPYLTYE
Sbjct: 111 PFSNKLYSGCLQKRVGITAGICVLIENKAEKKGDRYEAIYSFYFGDYGHISVQGPYLTYE 170

Query: 174 DTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEP 233
           ++YLAVTGGSGIFEGVYGQVKL Q+VFPFKLFYTFYLKGIKDLP+ LL KPV+P P VEP
Sbjct: 171 ESYLAVTGGSGIFEGVYGQVKLNQIVFPFKLFYTFYLKGIKDLPQELLAKPVEPSPAVEP 230

Query: 234 SPAAKACEPGAAIDNFTN 251
           SPAAKACEP A +  FT+
Sbjct: 231 SPAAKACEPHAVVAGFTD 248

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2205349	254	AOC4 "allene oxide cyclase 4"	1.0	0.988	0.555	8e-69
TAIR|locus:2085974	258	AOC3 "allene oxide cyclase 3"	0.988	0.961	0.563	3.5e-68
TAIR|locus:2086009	253	AOC2 "allene oxide cyclase 2"	0.992	0.984	0.556	7.2e-68
TAIR|locus:2085999	254	AOC1 "allene oxide cyclase 1"	0.988	0.976	0.564	1.5e-67

TAIR|locus:2205349 AOC4 "allene oxide cyclase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 141/254 (55%), Positives = 179/254 (70%)

Query:     1 MACSSAALRTISSASVKLANSTSPTKSSSIL-VPFKLNNPFLITQCPHLQAATSCNFTVP 59
             M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +  
Sbjct:     1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSST 60

Query:    60 KRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNK 118
                F     ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NK
Sbjct:    61 GGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNK 120

Query:   119 LYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLA 178
             LYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSFYFGDYGHI+VQGPYLTYEDT+LA
Sbjct:   121 LYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLA 180

Query:   179 VTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIK-DLPEVLLGKPVDPHPGVEPSPAA 237
             +TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A
Sbjct:   181 ITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEA 240

Query:   238 KACEPGAAIDNFTN 251
             +A +PGA I NFTN
Sbjct:   241 QATQPGATIANFTN 254

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0016853 "isomerase activity" evidence=IEA

GO:0046423 "allene-oxide cyclase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2085974 AOC3 "allene oxide cyclase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 147/261 (56%), Positives = 183/261 (70%)

Query:     1 MACSSAALRTISSASVKLANSTSPTKSS--SILVPFK--LNNPFLITQCPHL----QAAT 52
             MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ T
Sbjct:     1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTT 59

Query:    53 SCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGD 111
             S N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGD
Sbjct:    60 SKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGD 117

Query:   112 LVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLT 171
             LVPF+NKLYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLT
Sbjct:   118 LVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLT 177

Query:   172 YEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPG 230
             YEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   
Sbjct:   178 YEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKD 237

Query:   231 VEPSPAAKACEPGAAIDNFTN 251
             V+P+P AKA EP   I NFTN
Sbjct:   238 VKPAPEAKAMEPSGVISNFTN 258

GO:0009507 "chloroplast" evidence=ISM

GO:0016853 "isomerase activity" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0046423 "allene-oxide cyclase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009620 "response to fungus" evidence=IEP;RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2086009 AOC2 "allene oxide cyclase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 142/255 (55%), Positives = 179/255 (70%)

Query:     1 MACSSAALRTISSASVKLANSTSPTKSSSILVPFK-LNNPFLITQCPHLQAATSCNFTVP 59
             MA S+ +L++IS  ++   +       SS+L   K   N  + +        +S  FT  
Sbjct:     1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGISSNGSDFSYPSS--FTAK 58

Query:    60 KRSFTCR--SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSN 117
             K     R  SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+N
Sbjct:    59 KNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTN 118

Query:   118 KLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYL 177
             KLYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++L
Sbjct:   119 KLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFL 178

Query:   178 AVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPA 236
             A+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P 
Sbjct:   179 AITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPE 238

Query:   237 AKACEPGAAIDNFTN 251
             AKA EP   I N+TN
Sbjct:   239 AKALEPSGVISNYTN 253

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0016853 "isomerase activity" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0046423 "allene-oxide cyclase activity" evidence=ISS;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2085999 AOC1 "allene oxide cyclase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 145/257 (56%), Positives = 184/257 (71%)

Query:     1 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQC-PHLQAATSCNFTVP 59
             MA S+ +L++IS  ++   + +     SS+L   K    F I+   P   + TS  FT P
Sbjct:     1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FT-P 57

Query:    60 KRSFT---CRSQ-ANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPF 115
             K+  T     SQ   ++++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF
Sbjct:    58 KKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPF 117

Query:   116 SNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDT 175
             +NKLYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED+
Sbjct:   118 TNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDS 177

Query:   176 YLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPS 234
             +LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+
Sbjct:   178 FLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPA 237

Query:   235 PAAKACEPGAAIDNFTN 251
             P AKA +P   + NFTN
Sbjct:   238 PEAKALKPSGVVSNFTN 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       251   0.00081  114 3  11 22  0.47    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.08u 0.08s 23.16t   Elapsed:  00:00:01
  Total cpu time:  23.08u 0.08s 23.16t   Elapsed:  00:00:01
  Start:  Fri May 10 13:05:05 2013   End:  Fri May 10 13:05:06 2013

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0016853 "isomerase activity" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0046423 "allene-oxide cyclase activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009269 "response to desiccation" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZC5	AOC4_ARATH	5, ., 3, ., 9, 9, ., 6	0.6359	0.8286	0.8188	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.99.6	0.946
3rd Layer	5.3.99	0.963

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
pfam06351	177	pfam06351, Allene_ox_cyc, Allene oxide cyclase	1e-132
PLN02343	229	PLN02343, PLN02343, allene oxide cyclase	1e-129

>gnl|CDD|191500 pfam06351, Allene_ox_cyc, Allene oxide cyclase

 Score =  369 bits (949), Expect = e-132
 Identities = 157/177 (88%), Positives = 163/177 (92%)

Query: 73  DDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITA 132
           +  RP KVQEL VYEINERDRGSPAYLRLSQK VNSLGDLVPFSNKLYTGDLQKRLGITA
Sbjct: 1   ESSRPAKVQELFVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYTGDLQKRLGITA 60

Query: 133 GLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQ 192
           G+CILI++ PEKKGDRYEAIYSFYFGDYGHI+VQGPYLTYEDTYLAVTGGSGIFEG YGQ
Sbjct: 61  GICILIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYEDTYLAVTGGSGIFEGAYGQ 120

Query: 193 VKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNF 249
           VKLQQ+VFPFKLFYTFYLKGIKDLPE LLGKPV P P VEPSPAAKACEP A I NF
Sbjct: 121 VKLQQIVFPFKLFYTFYLKGIKDLPEELLGKPVPPSPSVEPSPAAKACEPHAVIPNF 177

This family consists of several plant specific allene oxide cyclase proteins (EC:5.3.99.6). The allene oxide cyclase (AOC)-catalyzed step in jasmonate (JA) biosynthesis is important in the wound response of tomato. Length = 177

>gnl|CDD|177977 PLN02343, PLN02343, allene oxide cyclase

 Score =  364 bits (935), Expect = e-129
 Identities = 149/208 (71%), Positives = 173/208 (83%), Gaps = 3/208 (1%)

Query: 45  CPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQK 104
               +++ + +  +        ++AN  ++PRPTKVQEL VYEINERDRGSPA+L+LS+K
Sbjct: 24  DFSSRSSFTTSKNLTVTRALFSNKAN--ENPRPTKVQELSVYEINERDRGSPAFLKLSKK 81

Query: 105 PV-NSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHI 163
            V N+LGDLVPF+NKLYTGDL+KRLGITAGLC+LI++ PEKKGDRYEAIYSFYFGDYGHI
Sbjct: 82  SVENALGDLVPFTNKLYTGDLKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGDYGHI 141

Query: 164 AVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGK 223
           +VQGPYLTYEDTYLA+TGGSGIFEG YGQVKL Q+VFPFKLFYTFYLKGI DLPE L G 
Sbjct: 142 SVQGPYLTYEDTYLAITGGSGIFEGAYGQVKLHQIVFPFKLFYTFYLKGIPDLPEELTGT 201

Query: 224 PVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           PV P P VEP+P AKACEP + I NFTN
Sbjct: 202 PVPPSPDVEPAPEAKACEPSSVIPNFTN 229

Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PLN02343	229	allene oxide cyclase	100.0
PF06351	176	Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR	100.0
PF03018	144	Dirigent: Dirigent-like protein; InterPro: IPR0042	98.72

>PLN02343 allene oxide cyclase

Probab=100.00  E-value=8.8e-114  Score=751.88  Aligned_cols=214  Identities=71%  Similarity=1.188  Sum_probs=199.5

Q ss_pred             eeccccCCCccccccccccccccccCCCCcceEEEeecCCCCCCCCCceeEEEEEEEeecccCCCcceEeecCCcc-ccc
Q 025525           31 LVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPV-NSL  109 (251)
Q Consensus        31 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~q~~~~~~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~~-nsl  109 (251)
                      .+.|+.+++..++     +.....+....+++|+|++|++  ++++|+|||||+|||||||||+||||||||+|++ |+|
T Consensus        15 ~~~~~~~~p~~s~-----~~~~~~s~~~s~~~~~~~~~~~--~~~~p~kvQel~VYEiNErDR~SPa~L~ls~k~~~~sL   87 (229)
T PLN02343         15 NLGISSNGPDFSS-----RSSFTTSKNLTVTRALFSNKAN--ENPRPTKVQELSVYEINERDRGSPAFLKLSKKSVENAL   87 (229)
T ss_pred             cccccccCccccc-----cccccccccccceeeeeccccc--CCCCCceeEEEEEEEeccccCCCcceEEcccCcccccc
Confidence            3456666665554     1111233445688999999997  8899999999999999999999999999999999 999


Q ss_pred             cccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEEEEEeecCeeEEEeCccccccccEEEEeccceeeeee
Q 025525          110 GDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGV  189 (251)
Q Consensus       110 GDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiySfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa  189 (251)
                      ||||||+||||+|||+|||||||||||+|||+||||||||||||||||||||||+|||||+||||||||||||+||||||
T Consensus        88 GDlVPFsNKlY~g~L~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpyltyeDt~LaiTGGsGiFega  167 (229)
T PLN02343         88 GDLVPFTNKLYTGDLKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYEDTYLAITGGSGIFEGA  167 (229)
T ss_pred             cceeccccccccchhhhhhcccceeEEEEEeccccCCceeEEEEEEEecCcceeEEeccccccccceEEeecCcceeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeeeeceeEEEEEEecCCCCChhhhcCCCCCCCCCCCCCcchhccCCCccccCCCC
Q 025525          190 YGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN  251 (251)
Q Consensus       190 ~GqVkL~qivfPfklfYtFylkGi~dLP~el~~~~v~Ps~~vep~p~aka~~p~a~~~nft~  251 (251)
                      ||||||||||||||||||||||||||||+||+++||+|||+|||+|+|||||||++|+||||
T Consensus       168 ~GqvkL~qivfPfKlfYTFyLkGi~dLP~eL~~~~v~Ps~~Vep~p~Aka~~p~~~~~nfT~  229 (229)
T PLN02343        168 YGQVKLHQIVFPFKLFYTFYLKGIPDLPEELTGTPVPPSPDVEPAPEAKACEPSSVIPNFTN  229 (229)
T ss_pred             eeEEEEeeeeeeeeeEEEEEecccccchHHHhCCCCCCCCCCCcChhHhhcCCCccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5

Probab=100.00  E-value=3.3e-109  Score=702.23  Aligned_cols=176  Identities=88%  Similarity=1.436  Sum_probs=137.9

Q ss_pred             CCCCceeEEEEEEEeecccCCCcceEeecCCccccccccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEE
Q 025525           74 DPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIY  153 (251)
Q Consensus        74 ~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiy  153 (251)
                      ++||+|||||+|||||||||+||||||||||++|+|||||||+||||+|+||||||||||||++|||+|||+||||||+|
T Consensus         1 ~~~p~kvqel~vyeiNErdR~SPa~L~ls~k~~nslGDlvpFsNklY~g~l~~rlGitaG~Cvliq~~p~k~GdryEaiy   80 (176)
T PF06351_consen    1 SSRPTKVQELSVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYDGDLQKRLGITAGICVLIQHVPEKKGDRYEAIY   80 (176)
T ss_dssp             -------EEEEEEEE--S-S--S--B--SSSSSS-TT-EEEEEEEEEETTSS-EEEEEEEEEEEEEEECCCTEEEEEEEE
T ss_pred             CCCccceEEEEEEEEcccccCCCcEEEcccccchhcccccccccccccchhhhhhcccceEEEEEEeccccCCceEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCCCChhhhcCCCCCCCCCCCC
Q 025525          154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEP  233 (251)
Q Consensus       154 SfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~dLP~el~~~~v~Ps~~vep  233 (251)
                      ||||||||||||||||+|||||||||||||||||||||||||||||||||||||||||||||||+||+++||+|||+|||
T Consensus        81 SfyfGdyGhISvqGpy~t~eDtyLAVTGGtGiF~g~~GqVkL~qivfPfKlfYTFylkGi~dLP~el~~~~v~Ps~~vep  160 (176)
T PF06351_consen   81 SFYFGDYGHISVQGPYLTYEDTYLAVTGGTGIFEGVYGQVKLHQIVFPFKLFYTFYLKGIPDLPEELLGKPVEPSPAVEP  160 (176)
T ss_dssp             EEE-GGGEEEEEEEEEETTS-EEEEEEEEEETTTT-EEEEEEEEEETTTEEEEEEEEES-S---GGGHS-----STT---
T ss_pred             EEEecccceEEEecccccccceeEEEeccCceeecceEEEEEEEeecceEEEEEEEecccccccHHHhCCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccCCCccccCC
Q 025525          234 SPAAKACEPGAAIDNF  249 (251)
Q Consensus       234 ~p~aka~~p~a~~~nf  249 (251)
                      +|+||||||||+++||
T Consensus       161 ~p~Aka~~p~a~~~nf  176 (176)
T PF06351_consen  161 SPAAKACEPHAVIPNF  176 (176)
T ss_dssp             -HHHHCT-GGGB-TT-
T ss_pred             ChHHhhcCCcccccCC
Confidence            9999999999999998

3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.

>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants

Probab=98.72  E-value=2.9e-07  Score=75.37  Aligned_cols=115  Identities=25%  Similarity=0.379  Sum_probs=88.5

Q ss_pred             eEEEEEEEeecccCCCcceEeecCCcc---ccccccccccCccccccc--cceecceeeeEEEEeeccCCCCCeEEEEEE
Q 025525           80 VQELHVYEINERDRGSPAYLRLSQKPV---NSLGDLVPFSNKLYTGDL--QKRLGITAGLCILIENKPEKKGDRYEAIYS  154 (251)
Q Consensus        80 vqel~VyEiNErDr~SPa~L~ls~k~~---nslGDlVpFsNkLY~g~l--~~RlGitaG~Cvliq~~pek~GdryEaiyS  154 (251)
                      +-.|++|-.+.+....|--..+-.-..   +..|+++-|+|+|++|--  -+.||--+|+.+.-.    +.|..+-..++
T Consensus         2 ~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s----~~~~~~~~~~~   77 (144)
T PF03018_consen    2 ETHLHFYMHDIVSGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSAS----LDGSSWFMSFT   77 (144)
T ss_pred             ceEEEEEeeecCCCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeec----ccCccEEEEEE
Confidence            345666666555543343344433222   278999999999999854  789999999999853    45778888899


Q ss_pred             EEeecC---e-eEEEeCccc-cccccEEEEeccceeeeeeeeEEEEeee
Q 025525          155 FYFGDY---G-HIAVQGPYL-TYEDTYLAVTGGSGIFEGVYGQVKLQQL  198 (251)
Q Consensus       155 fyfGdy---G-hIsvqGpyl-t~eDtyLAVTGGtGifeGa~GqVkL~qi  198 (251)
                      +.|-+.   | +|+|+|.+- .-+..-+||+||||-|+.|+|-+++..+
T Consensus        78 ~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~  126 (144)
T PF03018_consen   78 LVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV  126 (144)
T ss_pred             EEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE
Confidence            999872   6 899999985 4466799999999999999999999887

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
1z8k_A	193	X-ray Structure Of Allene Oxide Cyclase From Arabid		2e-70
1zvc_A	189	X-Ray Structure Of Allene Oxide Cyclase From Arabid		3e-69
2gin_A	188	X-Ray Structure Of The Wt Allene Oxide Cyclase 2 Fr		4e-68
2dio_A	188	Crystal Structure Of The Allene Oxide Cyclase 2 Wit		1e-67
2brj_A	188	X-Ray Structure Of The Allene Oxide Cyclase From Ar		1e-67
4h6b_A	195	Structural Basis For Allene Oxide Cyclization In Mo		1e-64
4h69_A	194	Crystal Structure Of The Allene Oxide Cyclase 2 Fro		5e-63

>pdb|1Z8K|A Chain A, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770 Length = 193

Iteration: 1
 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 151/186 (81%), Gaps = 1/186 (0%)
Query: 67  SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQK 126
           SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +      LGDLVPF+NKLYTGDL+K
Sbjct: 8   SQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLXFGLGDLVPFTNKLYTGDLKK 67
Query: 127 RLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIF 186
           R+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIF
Sbjct: 68  RVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIF 127
Query: 187 EGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAA 245
           EG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   
Sbjct: 128 EGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGV 187
Query: 246 IDNFTN 251
           I N+TN
Sbjct: 188 ISNYTN 193

>pdb|1ZVC|A Chain A, X-Ray Structure Of Allene Oxide Cyclase From Arabidopsis Thaliana At3g25760 Length = 189

Iteration: 1
 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 150/182 (82%), Gaps = 1/182 (0%)
Query: 71  SSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGI 130
           ++++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KR+GI
Sbjct: 8   NTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGI 67
Query: 131 TAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVY 190
           TAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG Y
Sbjct: 68  TAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAY 127
Query: 191 GQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNF 249
           GQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NF
Sbjct: 128 GQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNF 187
Query: 250 TN 251
           TN
Sbjct: 188 TN 189

>pdb|2GIN|A Chain A, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana Length = 188

Iteration: 1
 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/176 (69%), Positives = 145/176 (82%), Gaps = 1/176 (0%)
Query: 77  PTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCI 136
           P+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KR+GITAGLC+
Sbjct: 13  PSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 137 LIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQ 196
           +IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQ
Sbjct: 73  VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 197 QLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           QLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188

>pdb|2DIO|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound Inhibitor Vernolic Acid Length = 188

Iteration: 1
 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/176 (69%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Query: 77  PTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCI 136
           P+KVQEL VYEINE DR SP  L+ +      LGDLVPF+NKLYTGDL+KR+GITAGLC+
Sbjct: 13  PSKVQELSVYEINELDRHSPKILKNAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 137 LIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQ 196
           +IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQ
Sbjct: 73  VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 197 QLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           QLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188

>pdb|2BRJ|A Chain A, X-Ray Structure Of The Allene Oxide Cyclase From Arabidopsis Thaliana Length = 188

Iteration: 1
 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/176 (69%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Query: 77  PTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCI 136
           P+KVQEL VYEINE DR SP  L+ +      LGDLVPF+NKLYTGDL+KR+GITAGLC+
Sbjct: 13  PSKVQELSVYEINELDRHSPKILKNAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 137 LIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQ 196
           +IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQ
Sbjct: 73  VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 197 QLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           QLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188

>pdb|4H6B|A Chain A, Structural Basis For Allene Oxide Cyclization In Moss Length = 195

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 134/181 (74%), Gaps = 7/181 (3%)
Query: 77  PTKVQELHVYEINERDRGSPAYLRLSQKP-------VNSLGDLVPFSNKLYTGDLQKRLG 129
           P  VQEL VYEINERDRGSP +L    K        VNSLGDLVPFSNK+Y G L+ RLG
Sbjct: 14  PGHVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLG 73
Query: 130 ITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGV 189
           ITAGLC LI +  +K GDRYEA+YSFYFGDYGHI+VQGPY+TYED+YLA+TGGSGIF G 
Sbjct: 74  ITAGLCTLISHSDQKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGC 133
Query: 190 YGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNF 249
           YGQ KL Q++FPFKLFYTFYL+GIK LPE L    V P P V P+  AK C P     NF
Sbjct: 134 YGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCAPCVPPSPSVAPADEAKQCLPNHVAPNF 193
Query: 250 T 250
           T
Sbjct: 194 T 194

>pdb|4H69|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From Physcomitrella Patens Complexed With Substrate Analog Length = 194

Iteration: 1
 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/178 (66%), Positives = 130/178 (73%), Gaps = 6/178 (3%)
Query: 80  VQELHVYEINERDRGSPAYLRLSQKP------VNSLGDLVPFSNKLYTGDLQKRLGITAG 133
           VQEL VYEINERDRGSP  L    K        NSLGDLVPFSNK+Y G LQ+RLGITAG
Sbjct: 17  VQELSVYEINERDRGSPVILPFGGKKDENGAHANSLGDLVPFSNKVYDGSLQRRLGITAG 76
Query: 134 LCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQV 193
           +C LI +  EKKGDRYEA YSFYFGDYGHI+VQGPY+TYEDT L VTGG+GIF G +G  
Sbjct: 77  ICTLISHNAEKKGDRYEAQYSFYFGDYGHISVQGPYITYEDTELVVTGGTGIFAGCHGVA 136
Query: 194 KLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           KL Q++FP KLFYTFYL+GIK LPE L    V P P  EPS  AK C P +   NFTN
Sbjct: 137 KLHQIIFPVKLFYTFYLQGIKKLPEELCASVVPPSPSAEPSEQAKKCHPSSVAPNFTN 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
2brj_A	188	Arabidopsis thaliana genomic DNA, chromosome 3, TA	1e-100

>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A Length = 188

 Score =  289 bits (741), Expect = e-100
 Identities = 123/187 (65%), Positives = 147/187 (78%), Gaps = 1/187 (0%)

Query: 66  RSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQ 125
           R   +      P+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+
Sbjct: 2   RGSHHHHHHRSPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLK 61

Query: 126 KRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGI 185
           KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GI
Sbjct: 62  KRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGI 121

Query: 186 FEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGA 244
           FEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP  
Sbjct: 122 FEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSG 181

Query: 245 AIDNFTN 251
            I N+TN
Sbjct: 182 VISNYTN 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
4h6b_A	195	Allene oxide cyclase; B-barrel, oxylipins, fatty a	100.0
2brj_A	188	Arabidopsis thaliana genomic DNA, chromosome 3, TA	100.0

>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*

Probab=100.00  E-value=1.3e-103  Score=676.17  Aligned_cols=180  Identities=67%  Similarity=1.174  Sum_probs=171.7

Q ss_pred             CCCCCCceeEEEEEEEeecccCCCcceEeecCCc-------cccccccccccCccccccccceecceeeeEEEEeeccCC
Q 025525           72 SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKP-------VNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEK  144 (251)
Q Consensus        72 ~~~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~-------~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek  144 (251)
                      .++++|+|||||+|||||||||+||||||||||.       +|+|||||||+|||||++|++|||||+|+||+|||+|||
T Consensus         9 ~~~~~p~~vqel~VyEiNE~dr~sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l~~RiGitaG~Cv~i~~~~~k   88 (195)
T 4h6b_A            9 ARGASPGHVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITAGLCTLISHSDQK   88 (195)
T ss_dssp             -------CCEEEEEEEECCSCSCCCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTSCCEEEEEEEEEEEEEEETTT
T ss_pred             ccCCCCceeEEEEEEEecccccCCcceeecccccCccccccccccccccccccccccccccccccccccEEEEEeecCCC
Confidence            3788999999999999999999999999999997       899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCCCChhhhcCCC
Q 025525          145 KGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKP  224 (251)
Q Consensus       145 ~GdryEaiySfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~dLP~el~~~~  224 (251)
                      +||||||+|||||||||||+|||||+||||+|||||||||||+||+|||||||||||||||||||||||||||+||+++|
T Consensus        89 ~GdryEci~Tf~fGD~GhIsvqGpy~t~eDs~lAITGGTGiF~Ga~GqVkl~qiv~pfklfytfyl~gi~~lp~~l~~~~  168 (195)
T 4h6b_A           89 NGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCAPC  168 (195)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEEEEETTBCEEEEEEEESGGGTTCEEEEEEEEEETTTEEEEEEEEESSCCCCGGGCSCC
T ss_pred             CCceEEEEEEEEecCCceEEEecceeccCceeEEEecCcceEcccEEEEEEeEeeeeeeEEEEEEecccccchHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcchhccCCCccccCCCC
Q 025525          225 VDPHPGVEPSPAAKACEPGAAIDNFTN  251 (251)
Q Consensus       225 v~Ps~~vep~p~aka~~p~a~~~nft~  251 (251)
                      |+|+|+|||+|+|||||||++++|||.
T Consensus       169 v~p~~~vep~~~ak~~~p~~~~~nft~  195 (195)
T 4h6b_A          169 VPPSPSVAPADEAKQCLPNHVAPNFTK  195 (195)
T ss_dssp             CCCCTTCCCCHHHHTTCTTSBCTTCCC
T ss_pred             CCCCCCCCcChhHhhcCCccccccccC
Confidence            999999999999999999999999995

>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A

Probab=100.00  E-value=4.2e-99  Score=645.75  Aligned_cols=178  Identities=69%  Similarity=1.175  Sum_probs=172.6

Q ss_pred             CCCCceeEEEEEEEeecccCCCcceEeecCCccccccccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEE
Q 025525           74 DPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIY  153 (251)
Q Consensus        74 ~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiy  153 (251)
                      +..|+|||||+|||||||||+||||||||||++|++||||||+|||||+++++|||||+|+|++|||+||++||||||+|
T Consensus        10 ~~~~~~vq~l~vye~NE~dr~sPa~L~l~~k~~~slGDlvpFsNkLydg~l~~rvG~taG~Cv~~~~~p~~~gdryE~ty   89 (188)
T 2brj_A           10 HRSPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATY   89 (188)
T ss_dssp             -----CCEEEEEEEECCSCSCCCCCBCCCSSSSSCTTCEEEECCEEEETTSSCEEEEEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             cCCccceEEEEEEEecccccCCCceEEcccccCcCcccEEeecccccccccceeccccceEEEEEEecCCCCCcEEEEEE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCC-CChhhhcCCCCCCCCCCC
Q 025525          154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIK-DLPEVLLGKPVDPHPGVE  232 (251)
Q Consensus       154 SfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~-dLP~el~~~~v~Ps~~ve  232 (251)
                      ||||||||||||||||+||||+|||||||||||+|||||||||||+||||+|||||||||| |||+||+++||+|+|+||
T Consensus        90 S~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~gA~G~Vkl~~i~~P~k~~yTf~L~gi~~~lp~~l~~~~v~p~~~ve  169 (188)
T 2brj_A           90 SFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIE  169 (188)
T ss_dssp             EEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTCC
T ss_pred             EEEeCCCceEEEeccccccccceeeEecCcceEcceEEEEEEEeeccCceEEEEEEEecCcccCcHHHhCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             CCcchhccCCCccccCCCC
Q 025525          233 PSPAAKACEPGAAIDNFTN  251 (251)
Q Consensus       233 p~p~aka~~p~a~~~nft~  251 (251)
                      |+|+||||||+++++||||
T Consensus       170 p~~~a~~~~p~~~~~n~t~  188 (188)
T 2brj_A          170 PAPEAKALEPSGVISNYTN  188 (188)
T ss_dssp             CCHHHHTTCGGGBCTTCCC
T ss_pred             cChHHhhcCCcccccccCC
Confidence            9999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2brja1	174	b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Th	1e-115

>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]} Length = 174

class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]

 Score =  326 bits (836), Expect = e-115
 Identities = 121/174 (69%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 79  KVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILI 138
           KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KR+GITAGLC++I
Sbjct: 1   KVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVI 60

Query: 139 ENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQL 198
           E+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQL
Sbjct: 61  EHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQL 120

Query: 199 VFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
           V+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct: 121 VYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d2brja1	174	Allene oxide cyclase, AOC {Thale cress (Arabidopsi	100.0

>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]}

class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]

Probab=100.00  E-value=3.6e-107  Score=685.71  Aligned_cols=173  Identities=70%  Similarity=1.192  Sum_probs=172.1

Q ss_pred             eeEEEEEEEeecccCCCcceEeecCCccccccccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEEEEEee
Q 025525           79 KVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFG  158 (251)
Q Consensus        79 kvqel~VyEiNErDr~SPa~L~ls~k~~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiySfyfG  158 (251)
                      |||||+|||||||||+||||||+++|++|+|||||||+||||+|||+||||||+|+|++|||+|||+||||||+||||||
T Consensus         1 kvqel~VYEiNErdR~SPa~L~~s~~~~n~lGDlVpFsNkly~g~l~kRlGitaG~C~liq~~pek~gdryEa~ySfyfG   80 (174)
T d2brja1           1 KVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFG   80 (174)
T ss_dssp             CCEEEEEEEECCSCSCCCCCBCCCSSSSSCTTCEEEECCEEEETTSSCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECG
T ss_pred             CceEEEEEEeccccCCCchheeccccccccccccccccchhcccchhhhccceeeEEEEEEecCCcCcceeEEEEEEEec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCC-CChhhhcCCCCCCCCCCCCCcch
Q 025525          159 DYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIK-DLPEVLLGKPVDPHPGVEPSPAA  237 (251)
Q Consensus       159 dyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~-dLP~el~~~~v~Ps~~vep~p~a  237 (251)
                      |||||||||||+|||||||||||||||||||||||||||||||||||||||||||| |||+||+++||+|||+|||+|+|
T Consensus        81 DyGhISvqGpyltyeDtylaiTGGsGiFeGa~GqVkL~qivfPfKlfYTFyLkGip~dLP~~L~~~~v~Ps~~vep~~~A  160 (174)
T d2brja1          81 DYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEA  160 (174)
T ss_dssp             GGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTCCCCHHH
T ss_pred             CcccEEEeccccccccceeeeecccceeecceeEEEEeeeeeeeeEEEEEEEccCcccChHHHhCCCCCCCCCCCcChHH
Confidence            99999999999999999999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             hccCCCccccCCCC
Q 025525          238 KACEPGAAIDNFTN  251 (251)
Q Consensus       238 ka~~p~a~~~nft~  251 (251)
                      ||||||++++||||
T Consensus       161 ka~~p~~~~~nfT~  174 (174)
T d2brja1         161 KALEPSGVISNYTN  174 (174)
T ss_dssp             HTTCGGGBCTTCCC
T ss_pred             hccCCcccccccCC
Confidence            99999999999998