Citrus Sinensis ID: 025568


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
ccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHccHHHHHHcccccccccccc
cHHHHHHHHHHcccccccccccccccccEcccccHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccHHcccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccc
MYMLILYKFSEIRVQLVPKLsrciyngrleiwpskdwelesiHEFEVLEMIREHISTVIGLrancsvtdswaTTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHlthrnslqfpeawsyglkqnqvvgcvnntqsislgrgtnghelkqenlkcyvmgfdpeTLQRCAKLRSREAVNLVEkhscalfgdgqtglldtdeVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
MYMLILYKFSEIRVQLVPKLSRCIYNGrleiwpskdweLESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
*YMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYK****
MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEEC*********************************************************KCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLK**
MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAH**********************************************LKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLK*N
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
224069880275 predicted protein [Populus trichocarpa] 0.996 0.905 0.749 1e-104
255580495 408 conserved hypothetical protein [Ricinus 0.996 0.610 0.712 1e-100
225467702 380 PREDICTED: uncharacterized protein LOC10 0.976 0.642 0.653 1e-90
356558985 388 PREDICTED: uncharacterized protein LOC10 0.972 0.626 0.648 7e-86
356504408 393 PREDICTED: uncharacterized protein LOC10 0.972 0.618 0.636 1e-83
449464112 388 PREDICTED: uncharacterized protein LOC10 0.976 0.628 0.626 3e-83
449527687251 PREDICTED: uncharacterized protein LOC10 0.976 0.972 0.626 8e-83
357513325 372 hypothetical protein MTR_8g012420 [Medic 0.988 0.663 0.62 9e-83
356566244 353 PREDICTED: uncharacterized protein LOC10 0.912 0.645 0.584 7e-78
297833518 371 hypothetical protein ARALYDRAFT_896892 [ 0.88 0.592 0.592 6e-75
>gi|224069880|ref|XP_002303068.1| predicted protein [Populus trichocarpa] gi|222844794|gb|EEE82341.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/251 (74%), Positives = 214/251 (85%), Gaps = 2/251 (0%)

Query: 1   MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIG 60
           MYML+LYKFSEIRV LVPKLSRCIYNGRLEI PSKDWELESIH FEVLEM+REH+STVIG
Sbjct: 26  MYMLVLYKFSEIRVPLVPKLSRCIYNGRLEIRPSKDWELESIHSFEVLEMVREHVSTVIG 85

Query: 61  LRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHR 120
           L+AN SV DSWATTE+QR RLGRVY ASILYGYFLKSASLR++LE CL   HQD+HL HR
Sbjct: 86  LKANSSVADSWATTEVQRCRLGRVYAASILYGYFLKSASLRHHLEWCLVLPHQDIHLGHR 145

Query: 121 NSLQFPEAW-SYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRC 179
           ++LQFPE+  SYGL  N V G ++N QS S G   N  + + E LKCY+MGFD ETLQRC
Sbjct: 146 STLQFPESLPSYGL-TNLVFGHISNKQSTSQGTRLNRPKSEHEKLKCYMMGFDSETLQRC 204

Query: 180 AKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEE 239
           AKL+S+EAVNL+EKHSCALFGD +TG+L+ DEVILTSFSSLKRLVLEA+AFG FLWD EE
Sbjct: 205 AKLKSKEAVNLIEKHSCALFGDEKTGVLENDEVILTSFSSLKRLVLEAVAFGCFLWDTEE 264

Query: 240 YADAVYKLKEN 250
             ++VYKLK+N
Sbjct: 265 DVNSVYKLKDN 275




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580495|ref|XP_002531072.1| conserved hypothetical protein [Ricinus communis] gi|223529318|gb|EEF31286.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225467702|ref|XP_002272171.1| PREDICTED: uncharacterized protein LOC100251038 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558985|ref|XP_003547782.1| PREDICTED: uncharacterized protein LOC100804253 [Glycine max] Back     alignment and taxonomy information
>gi|356504408|ref|XP_003520988.1| PREDICTED: uncharacterized protein LOC100793365 [Glycine max] Back     alignment and taxonomy information
>gi|449464112|ref|XP_004149773.1| PREDICTED: uncharacterized protein LOC101209314 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527687|ref|XP_004170841.1| PREDICTED: uncharacterized protein LOC101230760 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357513325|ref|XP_003626951.1| hypothetical protein MTR_8g012420 [Medicago truncatula] gi|355520973|gb|AET01427.1| hypothetical protein MTR_8g012420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356566244|ref|XP_003551344.1| PREDICTED: uncharacterized protein LOC100794032 [Glycine max] Back     alignment and taxonomy information
>gi|297833518|ref|XP_002884641.1| hypothetical protein ARALYDRAFT_896892 [Arabidopsis lyrata subsp. lyrata] gi|297330481|gb|EFH60900.1| hypothetical protein ARALYDRAFT_896892 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2079626368 AT3G07310 "AT3G07310" [Arabido 0.448 0.304 0.741 1.2e-69
TAIR|locus:2152516344 AT5G48590 "AT5G48590" [Arabido 0.444 0.322 0.732 9.9e-64
TAIR|locus:2088490427 AT3G17800 "AT3G17800" [Arabido 0.948 0.555 0.4 4.2e-40
TAIR|locus:2198055423 AT1G48450 "AT1G48450" [Arabido 0.952 0.562 0.403 5.3e-40
TAIR|locus:2031760406 AT1G32160 "AT1G32160" [Arabido 0.956 0.588 0.350 8.5e-33
TAIR|locus:2079626 AT3G07310 "AT3G07310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 437 (158.9 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 83/112 (74%), Positives = 95/112 (84%)

Query:     1 MYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIG 60
             MYMLI YK+SEIRV LVPKLSRCIYNGRLEIWPSKDWELESI+  + LE+I+EH+S VIG
Sbjct:   137 MYMLIFYKYSEIRVPLVPKLSRCIYNGRLEIWPSKDWELESIYSCDTLEIIKEHVSAVIG 196

Query:    61 LRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAH 112
             LR N  VTD+WATT+IQ+L L +VY ASILYGYFLKSASLR+ LE  L+  H
Sbjct:   197 LRVNSCVTDNWATTQIQKLHLRKVYAASILYGYFLKSASLRHQLECSLSDIH 248


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
TAIR|locus:2152516 AT5G48590 "AT5G48590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088490 AT3G17800 "AT3G17800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198055 AT1G48450 "AT1G48450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031760 AT1G32160 "AT1G32160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00002530
hypothetical protein (275 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
pfam0554285 pfam05542, DUF760, Protein of unknown function (DU 6e-15
>gnl|CDD|203271 pfam05542, DUF760, Protein of unknown function (DUF760) Back     alignment and domain information
 Score = 67.6 bits (166), Expect = 6e-15
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 38  ELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKS 97
            L      EVLE +R ++S ++G            T +  R  L ++  +S++ GYFL++
Sbjct: 17  RLADSASPEVLEAMRRNVSGLLGSL---PSDHFEVTIQTSRENLAQLLASSMMTGYFLRN 73

Query: 98  ASLRYYLEECL 108
           A  R  LE  L
Sbjct: 74  AEQRLELERSL 84


This family contains several uncharacterized plant proteins. Length = 85

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
PF0554286 DUF760: Protein of unknown function (DUF760); Inte 99.92
PF0554286 DUF760: Protein of unknown function (DUF760); Inte 97.86
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins Back     alignment and domain information
Probab=99.92  E-value=2e-25  Score=172.41  Aligned_cols=72  Identities=29%  Similarity=0.419  Sum_probs=67.1

Q ss_pred             cchhhcccCcHHHHHHHHHHHHHhhccc-cCCCCCCCcceEEechhhhhhHHHHHhhhhHhhhhhhhHhHHHHHHh
Q 025568           35 KDWELESIHEFEVLEMIREHISTVIGLR-ANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLA  109 (250)
Q Consensus        35 ~~~~Le~~hS~Ev~emI~~hl~~vLG~~-~~~~~~~~~~~~~isr~~Lg~lyAAsmM~GYFLr~~eqR~~LE~sl~  109 (250)
                      .-..++++|||||+|+|++||.++||++ |++.++   ++++++|++||||||++||+|||||++|+|++||++|+
T Consensus        14 ~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~---~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~Le~sL~   86 (86)
T PF05542_consen   14 RIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFN---VTIQTSRENLAQLLAWSMMTGYFLRNAEQRLELERSLK   86 (86)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCc---ceeEECHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            3467999999999999999999999999 877655   89999999999999999999999999999999999985



>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00