Citrus Sinensis ID: 025572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSSIF
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHHcHHHHHHcccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEccHEEEEEcccccccccccccccccHHcHccccHEHEccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEcccccccHHHHHHHccccHHHcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccc
Coil and Loop (DISEMBL)
mlmccggrvlaglypakkplipynyhggnsrfrrlnsnwrcrasepesssfapsidaesadknaagfciiegpetvQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAElgiskeeqdnelpsfpsfipflpplsaaNLKVYYATCFSLIAGVILFGgllapslelklgiggtsyADFIQsvhlpmqlsqvdpivasfsgGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSSIF
Flexible Loop (DISEMBL)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASepesssfapsiDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSSIF
Low Complexity Region (SEG)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRasepesssfapsIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNElpsfpsfipflpplsAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSSIF
Disordered region (IsUnstruct)
**MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRC**********************AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIK*****************FPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNL****
Disordered Region (DISOPRED)
****CGGRVLAGLYPAKKPLIPYNYHG**SRF**********************************FCIIEGPETVQDFAKMELQEIH*NIRSRRNKIFLHMEEVRRLRIQ************************FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNV*QQEQKRCKYCLGTGIFLNLSSIF
Disordered Region (DISEMBL)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRC*************IDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSSIF
Disordered Region (DISPRO)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRA********************AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGI*******ELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSS*F
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGIFLNLSSIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
359490129	307	PREDICTED: uncharacterized protein LOC10	0.932	0.758	0.777	1e-101
224114611	316	predicted protein [Populus trichocarpa]	0.952	0.753	0.744	1e-100
297793723	307	hypothetical protein ARALYDRAFT_496333 [	0.92	0.749	0.794	2e-99
345841545	311	orange protein [Nicotiana tabacum]	0.952	0.765	0.743	9e-98
225454961	312	PREDICTED: uncharacterized protein LOC10	0.944	0.756	0.791	2e-97
255539933	313	conserved hypothetical protein [Ricinus	0.928	0.741	0.772	1e-96
449451844	326	PREDICTED: uncharacterized protein LOC10	0.932	0.714	0.717	1e-96
359302816	317	orange protein [Nicotiana tabacum]	0.952	0.750	0.725	1e-95
356544872	301	PREDICTED: uncharacterized protein LOC10	0.912	0.757	0.768	2e-95
15240312	307	uncharacterized protein [Arabidopsis tha	0.892	0.726	0.759	1e-94

>gi|359490129|ref|XP_002280857.2| PREDICTED: uncharacterized protein LOC100261377 [Vitis vinifera] gi|297744972|emb|CBI38564.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/243 (77%), Positives = 209/243 (86%), Gaps = 10/243 (4%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFR--RLNSN--WRCRASEPESSSFAPSIDAE 58
           M   GR+LA  Y    P   Y Y   NSRF   +L S+  WR   S PE+S+FAPS+D+E
Sbjct: 1   MVYTGRILAVSY---SPTTSYRY--SNSRFHQGKLKSDLKWRAMVSGPEASAFAPSVDSE 55

Query: 59  SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
           SADKN  GFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAE
Sbjct: 56  SADKNDTGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 115

Query: 119 LGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLG 178
           LGI KE Q+NEL +FPSFIPFLPPLS+ANLK+YYA CFSL+AG+I+FGGLLAP+LELKLG
Sbjct: 116 LGILKE-QENELQNFPSFIPFLPPLSSANLKLYYAACFSLLAGIIIFGGLLAPTLELKLG 174

Query: 179 IGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCL 238
           +GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVIS+LMIVE+NNVKQQE+KRCKYCL
Sbjct: 175 LGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISSLMIVEINNVKQQEKKRCKYCL 234

Query: 239 GTG 241
           GTG
Sbjct: 235 GTG 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114611|ref|XP_002332323.1| predicted protein [Populus trichocarpa] gi|222832570|gb|EEE71047.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/247 (74%), Positives = 207/247 (83%), Gaps = 9/247 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNY---HGGNSRF-----RRLNSNWRCRASEPESSSFAPS 54
           M C  RVL    P K PL  ++        SRF      +LN  W+  ASE +SSSFA S
Sbjct: 1   MACLSRVLTVSCPVK-PLYGFSACSSQNWRSRFADASNHKLNLRWKAMASESDSSSFAAS 59

Query: 55  IDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRI 114
           +D++S D+NA GFCIIEGPETVQDFAKMEL EI DNIRSRRNKIFLHMEEVRRLRIQQRI
Sbjct: 60  VDSDSPDRNATGFCIIEGPETVQDFAKMELLEIQDNIRSRRNKIFLHMEEVRRLRIQQRI 119

Query: 115 KNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLE 174
           KNAELGIS E ++NELP+FPSFIPFLPPLSA NL++YYATCFSLIAG+I+FGGLLAP+LE
Sbjct: 120 KNAELGISNESEENELPNFPSFIPFLPPLSAENLRLYYATCFSLIAGIIIFGGLLAPALE 179

Query: 175 LKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRC 234
           LKLG+GGTSY DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRC
Sbjct: 180 LKLGLGGTSYPDFIRTMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRC 239

Query: 235 KYCLGTG 241
           KYCLGTG
Sbjct: 240 KYCLGTG 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793723|ref|XP_002864746.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata] gi|297310581|gb|EFH41005.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/238 (79%), Positives = 206/238 (86%), Gaps = 8/238 (3%)

Query: 7   GRVLAGLYPAKKPLIP-YNYHGGNSRFRRLNS-NWRCRASEPESSSFAPSIDAES-ADKN 63
           GR+L+  YP   P  P ++ +  +S  RR  S  WR  A +PESS     +D+ES ADK 
Sbjct: 5   GRILSVSYPPD-PYTPRFSQYKLSSSLRRTRSLRWRFTALDPESSP----LDSESSADKF 59

Query: 64  AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISK 123
           AAGFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  
Sbjct: 60  AAGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIIN 119

Query: 124 EEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTS 183
           EEQ++ELP+FPSFIPFLPPLSAANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTS
Sbjct: 120 EEQEHELPNFPSFIPFLPPLSAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTS 179

Query: 184 YADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTG 241
           YADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTG
Sbjct: 180 YADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTG 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345841545|gb|AEO17754.1| orange protein [Nicotiana tabacum]

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 203/242 (83%), Gaps = 4/242 (1%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYN---YHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES 59
           M C GR+L  L  +  P         H  N R    N  WR  AS+ ++S+F  S D+ES
Sbjct: 1   MVCSGRILC-LSCSTTPFCSSTSRYLHRRNLRNNTNNIKWRSMASDADASAFTTSFDSES 59

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           +DK A GFCIIEGPETV+DFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQR+K+AEL
Sbjct: 60  SDKTAPGFCIIEGPETVEDFAKMELQEIRDNIRSRRNKIFLHMEEVRRLRIQQRLKSAEL 119

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI  +EQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG++LFGGLLAP+LELKLG+
Sbjct: 120 GILTDEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIMLFGGLLAPTLELKLGL 179

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCLG
Sbjct: 180 GGTSYADFIQSMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLG 239

Query: 240 TG 241
           TG
Sbjct: 240 TG 241

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454961|ref|XP_002280630.1| PREDICTED: uncharacterized protein LOC100266582 [Vitis vinifera]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/245 (79%), Positives = 215/245 (87%), Gaps = 9/245 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPY--NYHGGNSRFRR--LNSN--WRCRASEPESSSFAPSID 56
           M C GR+LA  Y    P   +  NY   NSRF +  L SN  WR  ASEPE+SSFA S+D
Sbjct: 1   MVCTGRILAVSY---SPTTSFHRNYRYSNSRFLQGNLKSNLKWRSMASEPEASSFASSVD 57

Query: 57  AESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKN 116
           ++S+DKN+ GFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIK+
Sbjct: 58  SDSSDKNSTGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKS 117

Query: 117 AELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 176
           AELGI KEEQ+NELP+FPSFIPFLPPLS+ANLK+YYATCFSLIAG+I+FGGLLAP+LELK
Sbjct: 118 AELGILKEEQENELPNFPSFIPFLPPLSSANLKLYYATCFSLIAGIIIFGGLLAPTLELK 177

Query: 177 LGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKY 236
           LG+GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKY
Sbjct: 178 LGLGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQENKRCKY 237

Query: 237 CLGTG 241
           CLGTG
Sbjct: 238 CLGTG 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539933|ref|XP_002511031.1| conserved hypothetical protein [Ricinus communis] gi|223550146|gb|EEF51633.1| conserved hypothetical protein [Ricinus communis]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/242 (77%), Positives = 208/242 (85%), Gaps = 10/242 (4%)

Query: 7   GRVLAGLYPAKKPL---IPYNYHGGNSRF----RRLNSNWRCRASEPESSSFAPSIDAES 59
           GR LA  YP K PL   + +N H    RF    R+L S WR  ASE ++SS +    +  
Sbjct: 5   GRALAVSYPVK-PLCLHVLHNPHHSTGRFIDVNRKLISKWRSMASELDASSPS--SSSFD 61

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           +DKNAAGFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL
Sbjct: 62  SDKNAAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 121

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI +EEQ+NELP+FPSFIPFLPPLSAANL++YYATCFSLIAG+I+FGGLLAP+LELKLG+
Sbjct: 122 GILQEEQENELPNFPSFIPFLPPLSAANLRLYYATCFSLIAGIIIFGGLLAPALELKLGL 181

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSY DFI++VHLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCLG
Sbjct: 182 GGTSYEDFIRNVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLG 241

Query: 240 TG 241
           TG
Sbjct: 242 TG 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451844|ref|XP_004143670.1| PREDICTED: uncharacterized protein LOC101219412 [Cucumis sativus] gi|449488619|ref|XP_004158115.1| PREDICTED: uncharacterized protein LOC101232024 [Cucumis sativus]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 183/255 (71%), Positives = 210/255 (82%), Gaps = 22/255 (8%)

Query: 8   RVLAGLYPAKKPLIPYNY--------------HGGNSRFRRLNSNWRCRA-------SEP 46
           RVL   YP    + P+++              + G  R ++L+S WR R+       S  
Sbjct: 3   RVLVASYPINHLIRPHSFRIDYCWSTCFISRFNSGKER-QKLSSRWRWRSMASDSTDSSS 61

Query: 47  ESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVR 106
            SSSFAPS++++ +DK +A FCIIEGPETVQDFAKMELQEI +NIRSRRNKIFLHMEEVR
Sbjct: 62  SSSSFAPSVESDPSDKTSASFCIIEGPETVQDFAKMELQEIQENIRSRRNKIFLHMEEVR 121

Query: 107 RLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFG 166
           RLRIQQRIKNAELGISKEE++NELP+FPSFIPFLPPLS+ANLK+YY TC+SLIAG+ILFG
Sbjct: 122 RLRIQQRIKNAELGISKEERENELPNFPSFIPFLPPLSSANLKLYYVTCYSLIAGIILFG 181

Query: 167 GLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNV 226
           GLLAP+LELKLG+GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNV
Sbjct: 182 GLLAPTLELKLGLGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNV 241

Query: 227 KQQEQKRCKYCLGTG 241
           KQQE KRCKYCLGTG
Sbjct: 242 KQQEHKRCKYCLGTG 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359302816|gb|AEV23056.1| orange protein [Nicotiana tabacum]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/248 (72%), Positives = 203/248 (81%), Gaps = 10/248 (4%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYN---YHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES 59
           M C GR+L  L  +  P         H  N R    N  WR  AS+ ++S+F  S D+ES
Sbjct: 1   MVCSGRILC-LSCSTTPFCSSTSRYLHRRNLRNNTNNIKWRSMASDADASAFTTSFDSES 59

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEE------VRRLRIQQR 113
           +DK A GFCIIEGPETV+DFAKMELQEI DNIRSRRNKIFLHMEE      VRRLRIQQR
Sbjct: 60  SDKTAPGFCIIEGPETVEDFAKMELQEIRDNIRSRRNKIFLHMEEACFSPYVRRLRIQQR 119

Query: 114 IKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173
           +K+AELGI  +EQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG++LFGGLLAP+L
Sbjct: 120 LKSAELGILTDEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIMLFGGLLAPTL 179

Query: 174 ELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKR 233
           ELKLG+GGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KR
Sbjct: 180 ELKLGLGGTSYADFIQSMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKR 239

Query: 234 CKYCLGTG 241
           CKYCLGTG
Sbjct: 240 CKYCLGTG 247

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544872|ref|XP_003540871.1| PREDICTED: uncharacterized protein LOC100780118 [Glycine max]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/242 (76%), Positives = 204/242 (84%), Gaps = 14/242 (5%)

Query: 3   MCCGGRVLAGL--YPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESA 60
           M C GR   G+  YP K      +Y   N+R R     W   A++   SSFAPS+D+   
Sbjct: 1   MLCLGR-FGGVSHYPIKSGWSRRDYT--NNRPR-----WCLMAAQESDSSFAPSLDS--- 49

Query: 61  DKNA-AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           DK A AGFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIK+AEL
Sbjct: 50  DKTASAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAEL 109

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI  EEQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG+ILFGGLLAPSLELKLG+
Sbjct: 110 GILNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGL 169

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSYADFI+S+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQEQKRCKYCLG
Sbjct: 170 GGTSYADFIESLHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLG 229

Query: 240 TG 241
           TG
Sbjct: 230 TG 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240312|ref|NP_200975.1| uncharacterized protein [Arabidopsis thaliana] gi|42573758|ref|NP_974975.1| uncharacterized protein [Arabidopsis thaliana] gi|9758482|dbj|BAB09011.1| unnamed protein product [Arabidopsis thaliana] gi|17529230|gb|AAL38842.1| unknown protein [Arabidopsis thaliana] gi|20453124|gb|AAM19804.1| AT5g61670/k11j9_190 [Arabidopsis thaliana] gi|21436109|gb|AAM51301.1| unknown protein [Arabidopsis thaliana] gi|21536802|gb|AAM61134.1| unknown [Arabidopsis thaliana] gi|23506191|gb|AAN31107.1| At5g61670/k11j9_190 [Arabidopsis thaliana] gi|332010120|gb|AED97503.1| uncharacterized protein [Arabidopsis thaliana] gi|332010121|gb|AED97504.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/245 (75%), Positives = 200/245 (81%), Gaps = 22/245 (8%)

Query: 7   GRVLAGLYPAKKPLIPYNYH----------GGNSRFRRLNSNWRCRASEPESSSFAPSID 56
           GR+L+  YP      PY +           G N R R     WR  A +PESSS      
Sbjct: 5   GRILSVSYPPD----PYTWRFSQYKLSSSLGRNRRLR-----WRFTALDPESSS---LDS 52

Query: 57  AESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKN 116
             SADK A+GFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN
Sbjct: 53  ESSADKFASGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKN 112

Query: 117 AELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 176
            ELGI  EEQ++ELP+FPSFIPFLPPL+AANLKVYYATCFSLIAG+ILFGGLLAP+LELK
Sbjct: 113 TELGIINEEQEHELPNFPSFIPFLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELK 172

Query: 177 LGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKY 236
           LGIGGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKY
Sbjct: 173 LGIGGTSYADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKY 232

Query: 237 CLGTG 241
           CLGTG
Sbjct: 233 CLGTG 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2151556	307	AT5G61670 "AT5G61670" [Arabido	0.924	0.752	0.704	5.4e-79
TAIR|locus:2152845	315	AT5G06130 [Arabidopsis thalian	0.732	0.580	0.646	1.7e-57

TAIR|locus:2151556 AT5G61670 "AT5G61670" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 167/237 (70%), Positives = 181/237 (76%)

Query:     7 GRVLAGLYPAKKPLIPYNYHGGNSRFRR-LNSNWRCRXXXXXXXXXXXXIDAES-ADKNA 64
             GR+L+  YP      PY +     +    L  N R R            +D+ES ADK A
Sbjct:     5 GRILSVSYPPD----PYTWRFSQYKLSSSLGRNRRLRWRFTALDPESSSLDSESSADKFA 60

Query:    65 AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKE 124
             +GFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  E
Sbjct:    61 SGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINE 120

Query:   125 EQDNEXXXXXXXXXXXXXXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSY 184
             EQ++E               AANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTSY
Sbjct:   121 EQEHELPNFPSFIPFLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSY 180

Query:   185 ADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTG 241
             ADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTG
Sbjct:   181 ADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTG 237

GO:0009536 "plastid" evidence=ISS

GO:0009661 "chromoplast organization" evidence=ISS

GO:0016120 "carotene biosynthetic process" evidence=ISS

TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 119/184 (64%), Positives = 140/184 (76%)

Query:    59 SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
             S D     FCIIEG ETVQDF +M+LQEI DNIRSRRNKIFL MEEVRRLR+QQRIK+ +
Sbjct:    62 SGDTVPNNFCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVK 121

Query:   119 -LGISKEEQDNEXXXXXXXXXXXXXXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKL 177
              +    E +  E                  LK  Y+T  +LI+G+I FGGL+AP+LELK+
Sbjct:   122 AINEDSELEATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKV 181

Query:   178 GIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYC 237
             G+GGTSY DFI+S+HLP+QLSQVDPIVASFSGGAVGVIS LM++EVNNVKQQE+KRCKYC
Sbjct:   182 GLGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYC 241

Query:   238 LGTG 241
             LGTG
Sbjct:   242 LGTG 245


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       223   0.00098  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  167 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.25u 0.10s 19.35t   Elapsed:  00:00:01
  Total cpu time:  19.25u 0.10s 19.35t   Elapsed:  00:00:01
  Start:  Fri May 10 15:41:53 2013   End:  Fri May 10 15:41:54 2013

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014180001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (307 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PLN03165	111	chaperone protein dnaJ-related; Provisional	95.26

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=95.26  E-value=0.0025  Score=51.79  Aligned_cols=46  Identities=26%  Similarity=0.424  Sum_probs=34.9

Q ss_pred             ceecccCcchhH-HHHHHHHhhhhh-hhhhhcccccccccceeccccc
Q 025572          203 IVASFSGGAVGV-ISALMIVEVNNV-KQQEQKRCKYCLGTGIFLNLSS  248 (250)
Q Consensus       203 IVASFsGGAVGV-isalmvvE~nNv-kqQekkrC~YC~GTGyL~Cat~  248 (250)
                      |.|...|=|||. |-.||+.+++|. |+++...|..|+|+|+-.|-.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C   58 (111)
T PLN03165         11 ISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFC   58 (111)
T ss_pred             hhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCC
Confidence            334444445664 567888888888 7888889999999999888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1guqa1	176	Galactose-1-phosphate uridylyltransferase {Escheri	85.59

>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=0.62  Score=36.18  Aligned_cols=35  Identities=11%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             CCcce--EeeCchhHHHHHhhhHHHHHHHHHhhhhhh
Q 025572           64 AAGFC--IIEGPETVQDFAKMELQEIHDNIRSRRNKI   98 (250)
Q Consensus        64 ~~~fc--Iiegpetv~Dfa~MqlqEI~dNI~sRrnKI   98 (250)
                      ..|+|  |||+|+--.+|+.|..++|++=|+.=|+++
T Consensus       101 ~~G~heVIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~  137 (176)
T d1guqa1         101 ARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQT  137 (176)
T ss_dssp             CCEEEEEEESCSCTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEECcccccChhhCCHHHHHHHHHHHHHHH
Confidence            45565  999999999999999999999887766653