Citrus Sinensis ID: 025661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Secondary Structure (PSIPRED)
cccHHHHccccccccccccccccHHHHHHHcccccccccccccccccHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccEccccccccccHcHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccHcHHHHHHHHHHHHHHHHHHHcccccccEcccccccccccccEccccccHHHHHccccccccHHHHEEccccccHcHHHHHHHHHHHHHHHHHHccccccEccccccc
Coil and Loop (DISEMBL)
MAQTMLLMSgvstshagnlkrdSLVTFqtqmlrpkpfshlmfnplsneSLTAAAASSSSKAFSTVALFksktkappktkkveskpkvedgifgtsggfgftkqneLFVGRVAMIGFAASLlgegitgkgILAQLNletgipiyeaePLLLFFILFTLLGAIgalgdrgkfvdepdeptglggavippgkglrsalglkeggkgALAQLnietgipineieplvLFNVIFFFVAalnpgtgkfvtdedee
Flexible Loop (DISEMBL)
MAQTMLLMSgvstshagnlkRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVAlfksktkappktkkveskpkvedgifgtsggfgFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTglggavippgkGLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGtgkfvtdedee
Low Complexity Region (SEG)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEsltaaaasssskafstvalFksktkappktkkVESKPKVEDgifgtsggfgftKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPlllffilftllGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSalglkeggkgalaqlNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Disordered region (IsUnstruct)
*****************************************************************************************GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD********GGAVIP***GLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKF*******
Disordered Region (DISOPRED)
*************************************************************************************************FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD****************KGLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPG***********
Disordered Region (DISEMBL)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNES*************STVALFKS**************PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Disordered Region (DISPRO)
********SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNP**************SKAFSTVALFKSKTK***********PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGT*KFV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q02060	274	Photosystem II 22 kDa pro	N/A	no	0.955	0.868	0.637	3e-75
Q9SMB4	274	Photosystem II 22 kDa pro	N/A	no	0.971	0.883	0.629	2e-68
Q9XF91	265	Photosystem II 22 kDa pro	yes	no	0.927	0.871	0.624	5e-65
P54773	276	Photosystem II 22 kDa pro	N/A	no	0.951	0.858	0.618	1e-60
Q9FPP4	276	Photosystem II 22 kDa pro	N/A	no	0.951	0.858	0.607	2e-59

>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1

 Score =  281 bits (719), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 181/284 (63%), Positives = 206/284 (72%), Gaps = 46/284 (16%)

Query: 1   MAQTMLLM-SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSS 59
           MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK       +  SN   +   +SSSS
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPK-------SSTSNLFFSPLPSSSSS 53

Query: 60  K--AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
               F T+ALFKSK KAP K +K   K KVEDG+FGTSGG GFTK+NELFVGRVAMIGFA
Sbjct: 54  SSTVFKTLALFKSKAKAPKKVEK--PKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFA 111

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP   
Sbjct: 112 ASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT-- 169

Query: 178 TGLGGAVIPPGKGLRSALGLKEG--------------------------------GKGAL 205
           TGL  AVIPPGK +RSALGLK                                  GKGAL
Sbjct: 170 TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGAL 229

Query: 206 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           AQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct: 230 AQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.
Spinacia oleracea (taxid: 3562)

>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/281 (62%), Positives = 198/281 (70%), Gaps = 39/281 (13%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S      L  +  +A+A++SS  
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHF 53

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
             +TVALFKSK KAP K    + K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54  TSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKF+D+P  PTGL
Sbjct: 114 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 173

Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
             AVIPPGKG +SALGL EG                                GKGALAQL
Sbjct: 174 DKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 233

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           N ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct: 234 NFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Nicotiana tabacum (taxid: 4097)

>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1

 Score =  247 bits (631), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 176/282 (62%), Positives = 193/282 (68%), Gaps = 51/282 (18%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL SGV+  H         +  ++ + +PK   H +F  LS  S    A  S  +
Sbjct: 1   MAQTMLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46

Query: 61  AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
           +F  +ALFK KTKA    KKVE  K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAAS
Sbjct: 47  SFVPLALFKPKTKA--APKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAAS 104

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P  PTG
Sbjct: 105 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTG 162

Query: 180 LGGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQ 207
           L  AVIPPGK +RSALGLKE                                 GKGALAQ
Sbjct: 163 LEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQ 222

Query: 208 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           LNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 223 LNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Arabidopsis thaliana (taxid: 3702)

>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 178/288 (61%), Positives = 197/288 (68%), Gaps = 51/288 (17%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S L    L     +++  +SSSK
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53

Query: 61  AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
             ST VALFKSK K      APPK K+     KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54  FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108

Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
           IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168

Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEG--------------------------------G 201
           P  PTGL  AVIPPGK  +SALGL EG                                G
Sbjct: 169 PTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITG 228

Query: 202 KGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           KGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 229 KGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Solanum lycopersicum (taxid: 4081)

>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 175/288 (60%), Positives = 194/288 (67%), Gaps = 51/288 (17%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S L    L     ++    SSSK
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSK 53

Query: 61  AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
             ST VALFKSK K      APPK K+     KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54  FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108

Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
           IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+F+D+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168

Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEG--------------------------------G 201
           P   TGL  AVIPPGK  +SALGL EG                                G
Sbjct: 169 PAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITG 228

Query: 202 KGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           KGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 229 KGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Solanum sogarandinum (taxid: 52705)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255545402	275	Photosystem II 22 kDa protein, chloropla	0.975	0.883	0.701	2e-85
224063082	272	hypothetical protein POPTRDRAFT_816277 [	0.963	0.882	0.693	2e-84
357463499	270	Photosystem II 22 kDa protein [Medicago	0.955	0.881	0.665	6e-84
388510160	273	unknown [Lotus japonicus]	0.963	0.879	0.698	8e-83
188509922	277	putative photosystem II protein [Gossypi	0.971	0.873	0.718	1e-82
133902325	278	putative photosystem II protein [Gossypi	0.971	0.870	0.714	3e-79
225459564	270	PREDICTED: photosystem II 22 kDa protein	0.955	0.881	0.658	1e-78
356509413	273	PREDICTED: photosystem II 22 kDa protein	0.963	0.879	0.683	2e-78
217072844	262	unknown [Medicago truncatula]	0.911	0.866	0.662	2e-78
449465453	272	PREDICTED: photosystem II 22 kDa protein	0.943	0.863	0.656	2e-78

>gi|255545402|ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223546847|gb|EEF48344.1| Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 197/281 (70%), Positives = 216/281 (76%), Gaps = 38/281 (13%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTML MSGVST H  +LKRD L+ FQ   LRPKPFS L+F+PL     T +++ + SK
Sbjct: 1   MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLP----TNSSSFAPSK 56

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T ALFKSK KA PK   V+ K KVEDG+FGTSGG GFTKQNELFVGRVAM+GFAASL
Sbjct: 57  TFTTFALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASL 116

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGEG+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P  PTG+
Sbjct: 117 LGEGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGI 174

Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
            GAVIPPGKG R+ALGLKEG                                GKGALAQL
Sbjct: 175 EGAVIPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 234

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           NIETGIP+NEIEPLVLFNVIFFF AALNPGTGKFVTDE++E
Sbjct: 235 NIETGIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEEDE 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063082|ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa] gi|118488707|gb|ABK96164.1| unknown [Populus trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 195/281 (69%), Positives = 214/281 (76%), Gaps = 41/281 (14%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTM+LMSGVST    +LKRD L+ FQ Q LRP PFS L++NPL +++       SSS 
Sbjct: 1   MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKA-------SSSN 53

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
           AF+T+ALFK +TKA PK      KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54  AFTTLALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+P   TG+
Sbjct: 114 LGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPT--TGI 171

Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
            GAVIPPGK  R+ALGLKEG                                GKGALAQL
Sbjct: 172 EGAVIPPGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 231

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           NIETGIP+NEIEPLVLFNV+FFF+AALNPGTGKFVTDEDEE
Sbjct: 232 NIETGIPVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDEE 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463499|ref|XP_003602031.1| Photosystem II 22 kDa protein [Medicago truncatula] gi|355491079|gb|AES72282.1| Photosystem II 22 kDa protein [Medicago truncatula] gi|388508062|gb|AFK42097.1| unknown [Medicago truncatula]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 187/281 (66%), Positives = 208/281 (74%), Gaps = 43/281 (15%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS++++ +LK+D L+  Q Q LRP+ FS + FNPL + S        SS+
Sbjct: 1   MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T+ALFKSKTKAP K  K     KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS+
Sbjct: 55  TFTTLALFKSKTKAPAKVVKKPKP-KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASI 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD  DEP   
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPN-- 169

Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
            G VIPPGKG RSALGL EG                                GKGALAQL
Sbjct: 170 TGGVIPPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQL 229

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           NIETG+PI EIEPLVLFNVIFFF+AALNPGTG FVTD++E+
Sbjct: 230 NIETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDDEED 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510160|gb|AFK43146.1| unknown [Lotus japonicus]

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 197/282 (69%), Positives = 216/282 (76%), Gaps = 42/282 (14%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPL-SNESLTAAAASSSS 59
           MAQTMLLMS VS+S++ +LK+D L+  Q+Q LRPK FS L FNPL SN SL       SS
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLF------SS 53

Query: 60  KAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
           + F+T+ALFKSK KAPP  K V+ KPKVEDG+FGTSGG GFTKQNELFVGRVAMIGFAAS
Sbjct: 54  RTFTTLALFKSKAKAPP-PKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAAS 112

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+ + PTG
Sbjct: 113 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD-ESPTG 171

Query: 180 LGGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQ 207
           L  AVIPPGKGLR ALGL EG                                GKGALAQ
Sbjct: 172 LDKAVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQ 231

Query: 208 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           LNIETGIPINEIEPLVLFNV FFF+AALNPGTGKFV+D+ E+
Sbjct: 232 LNIETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509922|gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 204/284 (71%), Positives = 220/284 (77%), Gaps = 42/284 (14%)

Query: 1   MAQTMLLMSG--VSTSHAGNLKRDS-LVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS   VS SH  NLKRD  L+ FQ Q L+PKPFSH +FNPLSN     A A+S
Sbjct: 1   MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSN-----AVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFKSKTKA PK  + + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKSKTKAAPKKAEPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEG--------------------------------GKGAL 205
           TG+ GAVIPPGKG+R ALGLKEG                                GKGAL
Sbjct: 174 TGVEGAVIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233

Query: 206 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE+E+
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEED 277

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902325|gb|ABO41853.1| putative photosystem II protein [Gossypium hirsutum]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 203/284 (71%), Positives = 216/284 (76%), Gaps = 42/284 (14%)

Query: 1   MAQTMLLMSG--VSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS   VSTSH  NLKRD +L+ FQ Q L+PKP SH +FNP SN       A+S
Sbjct: 1   MAQTMLVMSSTRVSTSHVVNLKRDHTLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFK KTKA PK    + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEG--------------------------------GKGAL 205
           TG+ GAVIPPGKG+R ALGLKEG                                GKGAL
Sbjct: 174 TGIEGAVIPPGKGIRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233

Query: 206 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE EE
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFFAAINPGTGKFVTDEAEE 277

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459564|ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis vinifera] gi|302141814|emb|CBI19017.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/281 (65%), Positives = 207/281 (73%), Gaps = 43/281 (15%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTML+   VS     +LKR  L+    Q LRPKPFSH              ++S+SS 
Sbjct: 1   MAQTMLITPSVSGHSVLDLKRQPLL----QRLRPKPFSH------LLLPPLPTSSSTSSP 50

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
           AF+T+ALFKSKTKA P  K  + KP+VEDGIFGTSGG GFTK+NELFVGRVAM+GFAASL
Sbjct: 51  AFTTLALFKSKTKAAPSKKVTKPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASL 110

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ D PTG+
Sbjct: 111 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDD-DPPTGI 169

Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
            GAVIPPGKGLRSALGL+EG                                GKGALAQL
Sbjct: 170 EGAVIPPGKGLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQL 229

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           NIETG+PI++IEPLVLFNVIFFF AALNPG+GKFVTD++EE
Sbjct: 230 NIETGVPISDIEPLVLFNVIFFFFAALNPGSGKFVTDDEEE 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509413|ref|XP_003523444.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Glycine max]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 213/281 (75%), Gaps = 41/281 (14%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS+S++ +LK+D  +  Q+Q LRPK FS L FNPL     ++ ++ SS +
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDLFLQLQSQSLRPK-FSQLSFNPLP----SSTSSFSSPR 55

Query: 61  AFSTVALFKSKTKAPP-KTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
            F+T+ALFKSKTKA P KTK  + K KVEDGIFGTSGGFGFTKQNELFVGRVAM+GFAAS
Sbjct: 56  TFTTLALFKSKTKAAPAKTKVTKPKQKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAAS 115

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGEGITGKGILAQLNLETGIP+YEAEPLLLFFILFTLLGAIG LGDRGKFVD  DEPT 
Sbjct: 116 LLGEGITGKGILAQLNLETGIPLYEAEPLLLFFILFTLLGAIGGLGDRGKFVD--DEPT- 172

Query: 180 LGGAVIPPGKGLRSALGLKEG-------------------------------GKGALAQL 208
             G VIPPGKG R ALGL  G                               GKGALAQL
Sbjct: 173 -TGGVIPPGKGFREALGLGSGPLFGFTKANELFVGRLAQLGFVFSLIGEIITGKGALAQL 231

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           NIETG+PINEIEPLVLFNV+FFF+AALNPGTGKFVTDE E+
Sbjct: 232 NIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEGED 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072844|gb|ACJ84782.1| unknown [Medicago truncatula]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 179/270 (66%), Positives = 197/270 (72%), Gaps = 43/270 (15%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS++++ +LK+D L+  Q Q LRP+ FS + FNPL + S        SS+
Sbjct: 1   MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T+ALFKSKTKAP K  K     KVEDGIFGTS GFGFTKQNELFVGRVAMIGFAAS+
Sbjct: 55  TFTTLALFKSKTKAPAKVVKKPKP-KVEDGIFGTSRGFGFTKQNELFVGRVAMIGFAASI 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD  DEP   
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPN-- 169

Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
            G VIPPGKG RSALGL EG                                GKGALAQL
Sbjct: 170 TGGVIPPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQL 229

Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPG 238
           NIETG+PI EIEPLVLFNVIFFF+AALNPG
Sbjct: 230 NIETGVPITEIEPLVLFNVIFFFIAALNPG 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465453|ref|XP_004150442.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Cucumis sativus] gi|449529497|ref|XP_004171736.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/282 (65%), Positives = 205/282 (72%), Gaps = 47/282 (16%)

Query: 2   AQTMLLMSGVSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           AQTMLL SGV   H   LKR+ SL    TQ      F+ L FNPL + S+     S   +
Sbjct: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQ------FTRLFFNPLPSHSV-----SLPPR 51

Query: 61  AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
            F+T+A+FKS+TKAPPK  KVE  K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAAS
Sbjct: 52  GFTTLAVFKSRTKAPPK--KVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS 109

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           +LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+D+P+  TG
Sbjct: 110 ILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATG 169

Query: 180 LGGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQ 207
           L  AVIPPGK  RSALGLKEG                                GKGALAQ
Sbjct: 170 LERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQ 229

Query: 208 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
           LNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKFVTDE+++
Sbjct: 230 LNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2823639	265	NPQ4 "NONPHOTOCHEMICAL QUENCHI	0.433	0.407	0.690	7.6e-53

TAIR|locus:2823639 NPQ4 "NONPHOTOCHEMICAL QUENCHING 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 7.6e-53, Sum P(3) = 7.6e-53
 Identities = 76/110 (69%), Positives = 79/110 (71%)

Query:    84 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143
             K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIY
Sbjct:    69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIY 128

Query:   144 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRS 193
             EAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK +RS
Sbjct:   129 EAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRS 176

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009517 "PSII associated light-harvesting complex II" evidence=TAS

GO:0010196 "nonphotochemical quenching" evidence=IMP

GO:0016168 "chlorophyll binding" evidence=TAS

GO:0051738 "xanthophyll binding" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XF91	PSBS_ARATH	No assigned EC number	0.6241	0.9277	0.8716	yes	no
Q02060	PSBS_SPIOL	No assigned EC number	0.6373	0.9558	0.8686	N/A	no
P54773	PSBS_SOLLC	No assigned EC number	0.6180	0.9518	0.8586	N/A	no
Q9FPP4	PSBS_SOLSG	No assigned EC number	0.6076	0.9518	0.8586	N/A	no
Q9SMB4	PSBS_TOBAC	No assigned EC number	0.6298	0.9718	0.8832	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN00084	214	PLN00084, PLN00084, photosystem II subunit S (PsbS	9e-09

>gnl|CDD|177707 PLN00084, PLN00084, photosystem II subunit S (PsbS); Provisional

 Score = 53.9 bits (129), Expect = 9e-09
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 102 KQNELFVGRVAMIGFAASLLGEGITGK-GILAQLNLETGIPIYEAEPLLLFFIL 154
           K  ELF GR+AM+GFA ++ G+ +TG  G L Q N ETG+P+ + E    FF+ 
Sbjct: 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLF 189

Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.51
PHA02337	35	putative high light inducible protein	99.33
PLN00014	250	light-harvesting-like protein 3; Provisional	99.1
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.7
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.54
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.5
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.42
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.41
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.39
PLN00187	286	photosystem II light-harvesting complex II protein	98.07
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.01
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.01
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.99
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.9
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.89
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	97.87
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.78
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.75
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	97.66
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.64
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.58
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	97.54
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.5
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.44
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.39
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.38
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.38
PLN00187	286	photosystem II light-harvesting complex II protein	97.38
PLN00171	324	photosystem light-harvesting complex -chlorophyll	96.69
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	96.37
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	96.26
PLN02449	485	ferrochelatase	95.26
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	93.34

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.51  E-value=1.5e-14  Score=126.67  Aligned_cols=53  Identities=47%  Similarity=0.829  Sum_probs=50.0

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHhh-chhhHHhhhcccCCCcccchhHHHHHH
Q 025661          101 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFFI  153 (249)
Q Consensus       101 T~~aEl~NGRlAMlGf~a~ll~El~T-GkGiL~Qlg~~~GiPi~~~~plll~~I  153 (249)
                      ++.+|+||||+||+||+++++.|++| |+|+++|+++++|+|+++.++++++|+
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl  188 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFL  188 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHH
Confidence            57899999999999999999999999 999999999999999999999887665

>PHA02337 putative high light inducible protein

Probab=99.33  E-value=7.9e-13  Score=88.76  Aligned_cols=32  Identities=41%  Similarity=0.560  Sum_probs=30.5

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus       100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      ||+++|+||||+||+||+++++.|+.|||++.
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            78999999999999999999999999999874

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.10  E-value=7.2e-11  Score=106.93  Aligned_cols=59  Identities=31%  Similarity=0.427  Sum_probs=46.0

Q ss_pred             cccCCCccCCccCCCCc--cCCc-----cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccC
Q 025661           81 VESKPKVEDGIFGTSGG--FGFT-----KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETG  139 (249)
Q Consensus        81 pk~~pkved~~fg~s~~--fGFT-----~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~G  139 (249)
                      |+....-|...|+++..  |.|-     +.+|++|||+|||||++++++|++||+|+++|+|...+
T Consensus       132 Pe~s~n~epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~  197 (250)
T PLN00014        132 PETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFC  197 (250)
T ss_pred             ccccCCCCCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhh
Confidence            44444445555988864  3332     45999999999999999999999999999999986433

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.70  E-value=1.3e-08  Score=92.66  Aligned_cols=58  Identities=40%  Similarity=0.478  Sum_probs=41.2

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHH---hhhcccCCCcccchhHHHHHHHHHHHHHh
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILA---QLNLETGIPIYEAEPLLLFFILFTLLGAI  161 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~---Qlg~~~GiPi~~~~plll~~I~ftLlaAi  161 (249)
                      +.+|+.||||||+|+++.++.|++|+.|++.   |+  +.|...|.+.+..++.|-+.+.+.+
T Consensus        92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~--~ag~~~~~~~~~~l~~ie~~~mg~~  152 (250)
T PLN00101         92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWY--DAGKAEYFASSSTLFVIEFILFHYV  152 (250)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccc--cccchhhcccchHHHHHHHHHHHHH
Confidence            5679999999999999999999999999873   43  3555545554444444434444444

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.54  E-value=2.8e-08  Score=87.66  Aligned_cols=42  Identities=36%  Similarity=0.530  Sum_probs=36.2

Q ss_pred             h-hhhcccc-------c-CccccccccccccccCCccchhHHHHHHHHHHH
Q 025661          192 R-SALGLKE-------G-GKGALAQLNIETGIPINEIEPLVLFNVIFFFVA  233 (249)
Q Consensus       192 r-~~~g~~~-------~-GkgaLaql~ietgvp~~e~ep~~~~~v~f~~~a  233 (249)
                      | +|+||..       | |||+|+|+|+|||||+.|+||+++|++.-.+|-
T Consensus       144 RLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl~gV~fN  194 (214)
T PLN00084        144 RLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLFGVFFN  194 (214)
T ss_pred             HHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHHHHHhhh
Confidence            6 9999987       5 999999999999999999999987776555443

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.50  E-value=6.8e-08  Score=87.70  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      +.|.+++|+.||||||+|++++++.|++++.|+.
T Consensus        79 ~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~  112 (244)
T PLN00097         79 LKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA  112 (244)
T ss_pred             HHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence            3344678999999999999999999999998774

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.42  E-value=1.1e-07  Score=78.13  Aligned_cols=34  Identities=38%  Similarity=0.522  Sum_probs=30.6

Q ss_pred             ccCCccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661           97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGI  130 (249)
Q Consensus        97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGi  130 (249)
                      .+.|.+++|++|||+||+|+++.++.|++++.+.
T Consensus        25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~   58 (156)
T PF00504_consen   25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPG   58 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTS
T ss_pred             hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCc
Confidence            5668899999999999999999999999998643

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.41  E-value=3e-07  Score=84.46  Aligned_cols=61  Identities=30%  Similarity=0.434  Sum_probs=39.6

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhh-hcccCCCcccchhHHHHHHHHHHHHHh
Q 025661          101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQL-NLETGIPIYEAEPLLLFFILFTLLGAI  161 (249)
Q Consensus       101 T~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Ql-g~~~GiPi~~~~plll~~I~ftLlaAi  161 (249)
                      .+++|+.||||||+|+++.++.|++++.|++... ..+.|...|...+..++.+-+.+++++
T Consensus       100 ~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~  161 (267)
T PLN00098        100 FAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWA  161 (267)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHH
Confidence            3678999999999999999999999998886522 123444434333333333333344444

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.39  E-value=3.4e-07  Score=83.79  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=28.6

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILA  132 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~  132 (249)
                      +++|+.||||||+|++++++.|+++++|++.
T Consensus        86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~  116 (262)
T PLN00048         86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIP  116 (262)
T ss_pred             HHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence            5679999999999999999999999998874

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.07  E-value=5.5e-06  Score=76.96  Aligned_cols=30  Identities=33%  Similarity=0.364  Sum_probs=27.1

Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHHHhhch
Q 025661           99 GFTKQNELFVGRVAMIGFAASLLGEGITGK  128 (249)
Q Consensus        99 GFT~~aEl~NGRlAMlGf~a~ll~El~TGk  128 (249)
                      -|.+++|++||||||+|+++.++.|+++|.
T Consensus       131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~  160 (286)
T PLN00187        131 QRFRECELIHGRWAMLATLGALSVEALTGV  160 (286)
T ss_pred             HHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence            456899999999999999999999999764

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.01  E-value=5.3e-06  Score=75.39  Aligned_cols=30  Identities=27%  Similarity=0.261  Sum_probs=25.4

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhc
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITG  127 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TG  127 (249)
                      +.|.+++|+.||||||+|+++.++.|+++.
T Consensus        79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~  108 (243)
T PLN00099         79 LERYKESELIHCRWAMLAVPGILVPEALGL  108 (243)
T ss_pred             HHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence            344467899999999999999999999753

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.01  E-value=8.1e-06  Score=74.81  Aligned_cols=31  Identities=26%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGI  130 (249)
Q Consensus       100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGi  130 (249)
                      +.+++|+.||||||+|++++++.|++||...
T Consensus        94 ~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w  124 (255)
T PLN00170         94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPW  124 (255)
T ss_pred             HHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence            3456899999999999999999999998754

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.99  E-value=7.1e-06  Score=75.34  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=27.6

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGI  130 (249)
Q Consensus       100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGi  130 (249)
                      +.+++|+.||||||+|++++++.|++++.|+
T Consensus        90 ~~re~El~hGR~AMLa~~G~i~~e~l~~~g~  120 (262)
T PLN00025         90 RNRELEVIHARWAMLGALGCVTPELLAKNGV  120 (262)
T ss_pred             HHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence            3456899999999999999999999998776

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.90  E-value=1.4e-05  Score=72.97  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=25.1

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhh
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGIT  126 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~T  126 (249)
                      +.|.+++|+.||||||+|+++.++.|+++
T Consensus        70 ~~~~r~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         70 LPYLQEAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             HHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence            34456789999999999999999999864

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.89  E-value=5.1e-05  Score=69.41  Aligned_cols=30  Identities=37%  Similarity=0.405  Sum_probs=26.9

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      +++|+.|||+||+|+++.++.|+++..|+.
T Consensus        84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~~  113 (252)
T PLN00147         84 VQAELVHSRFAMAGVAGILFTDLLRVTGIR  113 (252)
T ss_pred             HHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence            567999999999999999999999887753

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=97.87  E-value=6.2e-06  Score=67.87  Aligned_cols=28  Identities=36%  Similarity=0.443  Sum_probs=24.5

Q ss_pred             ccCCccchhhhhhHHHHHHHHHHHHHHH
Q 025661           97 GFGFTKQNELFVGRVAMIGFAASLLGEG  124 (249)
Q Consensus        97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El  124 (249)
                      .+.+++.+|++|||+||||+++.+++|.
T Consensus       129 ~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  129 EKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4667889999999999999999999873

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.78  E-value=1.7e-05  Score=72.56  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=35.8

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       103 ~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      ..|+.|||+||+++++.+++|++||+|+++++..-.-.|+.
T Consensus       202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~  242 (252)
T PLN00147        202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWH  242 (252)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence            46999999999999999999999999999998765556644

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.75  E-value=1.6e-05  Score=72.58  Aligned_cols=41  Identities=32%  Similarity=0.386  Sum_probs=35.7

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCc
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI  142 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi  142 (249)
                      +..|+-|||+||++|++.+.++++||+|.++++......|.
T Consensus       161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~  201 (246)
T PLN00100        161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPG  201 (246)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCc
Confidence            46899999999999999999999999999999875455553

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=97.66  E-value=2.6e-05  Score=69.38  Aligned_cols=28  Identities=39%  Similarity=0.599  Sum_probs=26.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661          104 NELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus       104 aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      +|+.|||+||+|+++.+..|++||+|++
T Consensus       180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        180 KELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            5999999999999999999999999985

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.64  E-value=3.6e-05  Score=70.01  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             chhhhhhHHHHHHHHHHHHHH-HhhchhhHHhhhcccCCCcc
Q 025661          103 QNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       103 ~aEl~NGRlAMlGf~a~ll~E-l~TGkGiL~Qlg~~~GiPi~  143 (249)
                      ..|+-|||+||+++++.+++| ++||+|+++++..-...|+.
T Consensus       188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~  229 (243)
T PLN00099        188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH  229 (243)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence            479999999999999999999 57899999998765555644

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.58  E-value=4e-05  Score=70.51  Aligned_cols=42  Identities=31%  Similarity=0.382  Sum_probs=37.1

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      +..|+.|||+||+++++.+++|++||+|.++++..-...|+.
T Consensus       207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~  248 (262)
T PLN00025        207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA  248 (262)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence            467999999999999999999999999999998766666644

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=97.54  E-value=3.3e-05  Score=70.62  Aligned_cols=42  Identities=33%  Similarity=0.474  Sum_probs=36.1

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      +..|+-|||+||+++++.++++++||+|.++++..-...|+.
T Consensus       201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~  242 (250)
T PLN00101        201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWH  242 (250)
T ss_pred             HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcc
Confidence            357999999999999999999999999999998655555543

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.50  E-value=6e-05  Score=69.24  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP  141 (249)
                      +..|+.|||+||+++++.+++|++||+|.++++..-.-.|
T Consensus       211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP  250 (262)
T PLN00048        211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADP  250 (262)
T ss_pred             HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCc
Confidence            3579999999999999999999999999999886444444

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.44  E-value=0.00011  Score=65.08  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=24.0

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHhhch
Q 025661          103 QNELFVGRVAMIGFAASLLGEGITGK  128 (249)
Q Consensus       103 ~aEl~NGRlAMlGf~a~ll~El~TGk  128 (249)
                      ..|+.|||+||||+++.+..|.++|.
T Consensus       170 ~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        170 AIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            46999999999999999999999885

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.39  E-value=0.00011  Score=67.84  Aligned_cols=40  Identities=28%  Similarity=0.414  Sum_probs=34.7

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP  141 (249)
                      +..|+-|||+||+++++.++++.+||+|+++++..-...|
T Consensus       216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP  255 (267)
T PLN00098        216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADP  255 (267)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCc
Confidence            3479999999999999999999999999999986544444

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.38  E-value=0.00012  Score=69.40  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=35.4

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       103 ~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      ..|+-|||+||+++++.+++|.+||+|.++++......|..
T Consensus       275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~  315 (324)
T PLN00171        275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH  315 (324)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccc
Confidence            46999999999999999999999999999988755555544

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.38  E-value=0.0001  Score=67.24  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP  141 (249)
                      +.+|+-|||+||+++++.++++.+||+|.++++..-...|
T Consensus       198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP  237 (244)
T PLN00097        198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADP  237 (244)
T ss_pred             HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCc
Confidence            3589999999999999999999999999999986544444

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.38  E-value=0.00012  Score=68.22  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=35.2

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCc
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI  142 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi  142 (249)
                      +..|+.|||+||+++++.++++.+||+|.++.|..-...|.
T Consensus       236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~  276 (286)
T PLN00187        236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL  276 (286)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcc
Confidence            35799999999999999999999999999988865555553

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=96.69  E-value=0.00066  Score=64.38  Aligned_cols=30  Identities=20%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      +++|+.||||||+|+++.++.|++++.|..
T Consensus       149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        149 FNFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            457999999999999999999999877654

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=96.37  E-value=0.0014  Score=60.33  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhc
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL  136 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~  136 (249)
                      +..|+-|||+||+++++.+++- .||+|.|+.+++
T Consensus       222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~~  255 (255)
T PLN00170        222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALGL  255 (255)
T ss_pred             HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhcC
Confidence            5689999999999999987766 799999998863

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=96.26  E-value=0.0026  Score=56.80  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGI  130 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGi  130 (249)
                      +-|.+++|+.|||+||+++++.++.|.++.-|.
T Consensus        72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~  104 (209)
T PLN00089         72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE  104 (209)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence            345578999999999999999999999875553

>PLN02449 ferrochelatase

Probab=95.26  E-value=0.0096  Score=59.08  Aligned_cols=31  Identities=35%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CCccCCccchhhhhhHHHHHHHHHHHHHHHhhchhhHHh
Q 025661           95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ  133 (249)
Q Consensus        95 s~~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Q  133 (249)
                      .|.|||++        +||+||++.++.|++||+|.+++
T Consensus       455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence            57899998        99999999999999999998763

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=93.34  E-value=0.011  Score=52.58  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHH
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEG  124 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El  124 (249)
                      +-+.+.+|+.|||+||+++++.++.|.
T Consensus        61 ~~~~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         61 FDRLRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHHHHHhhcccHHHHhhccceeecc
Confidence            455678999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.44
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.32
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.2
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.18
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.15
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.06
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.91
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.87
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.75
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.65
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.35
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	97.02

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.44  E-value=1.8e-07  Score=84.49  Aligned_cols=35  Identities=37%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             ccCCccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661           97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus        97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      .+.|.+++|+.||||||+|+++.++.|++++.|++
T Consensus        98 ~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2           98 SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            46777899999999999999999999999988876

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.32  E-value=5.4e-08  Score=86.92  Aligned_cols=36  Identities=42%  Similarity=0.529  Sum_probs=33.2

Q ss_pred             ccCCccchhhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 025661           97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA  132 (249)
Q Consensus        97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~  132 (249)
                      .+.|.+++|++||||||+|+++.++.|+++++|++.
T Consensus        87 ~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~  122 (251)
T 2wsc_4           87 NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN  122 (251)
T ss_dssp             CTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence            477889999999999999999999999999999874

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.20  E-value=3.1e-08  Score=89.74  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661           99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (249)
Q Consensus        99 GFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL  131 (249)
                      .|.+++|++||||||+|+++.++.|++++.|++
T Consensus        97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            778899999999999999999999999999876

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.18  E-value=6.2e-07  Score=79.05  Aligned_cols=43  Identities=33%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       101 T~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      .+.+|+.|||+||+||++.++.|.+||+|+++|+......|..
T Consensus       176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~  218 (232)
T 2bhw_A          176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN  218 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTT
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHH
Confidence            3568999999999999999999999999999998755555543

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.15  E-value=8.8e-07  Score=79.23  Aligned_cols=31  Identities=35%  Similarity=0.443  Sum_probs=27.7

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhch
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGK  128 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGk  128 (249)
                      +.|.+++|++||||||+|+++.++.|+++|-
T Consensus        89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~  119 (243)
T 3pl9_A           89 LQRFRECELIHGRWAMLATLGALTVEGLTGI  119 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence            4566899999999999999999999999763

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.06  E-value=1.9e-06  Score=77.07  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=36.0

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP  141 (249)
Q Consensus       100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP  141 (249)
                      +.+.+|+.|||+||+|+++.++.|++||+|+++|+..-...|
T Consensus       192 ~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP  233 (243)
T 3pl9_A          192 ILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDP  233 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCS
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence            345799999999999999999999999999999986444444

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.91  E-value=1.2e-06  Score=79.01  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=37.0

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhh-cccCCC
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIP  141 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg-~~~GiP  141 (249)
                      +.+.+.+|+.|||+||+||++.++.|.+||+|+++++. .-...|
T Consensus       214 ~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP  258 (269)
T 2wsc_2          214 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP  258 (269)
T ss_dssp             CTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc
Confidence            44557789999999999999999999999999999887 434444

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.87  E-value=1.7e-06  Score=78.34  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCc
Q 025661           99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI  142 (249)
Q Consensus        99 GFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi  142 (249)
                      -..+.+|+.|||+||+||++.++.|++||+|+++|+..-...|.
T Consensus       222 ~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~  265 (276)
T 2wsc_3          222 KDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPV  265 (276)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC---------
T ss_pred             HHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcc
Confidence            34567899999999999999999999999999998875444453

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.75  E-value=4.2e-06  Score=74.49  Aligned_cols=44  Identities=25%  Similarity=0.325  Sum_probs=38.0

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHH-HhhchhhHHhhhcccCCCcc
Q 025661          100 FTKQNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       100 FT~~aEl~NGRlAMlGf~a~ll~E-l~TGkGiL~Qlg~~~GiPi~  143 (249)
                      ..+.+|+.|||+||+|+++.++.| ++||+|++++++.-...|..
T Consensus       186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~  230 (241)
T 2wsc_1          186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH  230 (241)
T ss_dssp             CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC
T ss_pred             HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccc
Confidence            346789999999999999999999 58999999999876666755

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.65  E-value=5.6e-06  Score=73.70  Aligned_cols=30  Identities=27%  Similarity=0.265  Sum_probs=25.9

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhc
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITG  127 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TG  127 (249)
                      +-+.+++|+.||||||+++++.++.|+++.
T Consensus        80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~~  109 (241)
T 2wsc_1           80 LERYKESELIHCRWAMLAVPGILVPEALGY  109 (241)
T ss_dssp             HHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred             HHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence            445678999999999999999999998654

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.35  E-value=3.1e-05  Score=69.13  Aligned_cols=41  Identities=29%  Similarity=0.476  Sum_probs=35.6

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      +..|+.|||+ |+|+++.+++|.+||+|+++++..-...|..
T Consensus       201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~  241 (251)
T 2wsc_4          201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH  241 (251)
T ss_dssp             TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred             HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence            5789999999 9999999999999999999988755555544

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=97.02  E-value=0.00018  Score=63.38  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=27.9

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGI  130 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGi  130 (249)
                      +.|.+++|+.|||+||+|+++.++.|+++..|+
T Consensus        58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~   90 (232)
T 2bhw_A           58 FSKNRELEVIHSRWAMLGALGSVFPELLSRNGV   90 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhccchHHHhhhhhhhHHHhccCCc
Confidence            445578999999999999999999999875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.35
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.33

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.35  E-value=8.1e-08  Score=80.73  Aligned_cols=41  Identities=29%  Similarity=0.372  Sum_probs=35.4

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661          103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY  143 (249)
Q Consensus       103 ~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~  143 (249)
                      .+|+.|||+||||+++.+++|++||+|.+++|..-...|+.
T Consensus       165 ~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~  205 (218)
T d1rwta_         165 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN  205 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTT
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchh
Confidence            47999999999999999999999999999998754445543

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.33  E-value=1.4e-07  Score=79.30  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=27.4

Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHHHhhch
Q 025661           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGK  128 (249)
Q Consensus        98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGk  128 (249)
                      +-|.+++|+.|||+||+++++.++.|+++..
T Consensus        45 ~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          45 FAKNRELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhceehHhhhcceeehhhhccC
Confidence            5567889999999999999999999997644