Citrus Sinensis ID: 025718

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MLLQINPCSSFPLKYHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEEEEEHcHccccEHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mllqinpcssfplkyhplQHAVALAAqdgysseselASTSFMQVLNKKCDafyrltrpySCVSIIAALLSVsllplqspadftPKLIIEAFKCMVPAIMMNNYANAINQLADVhidkvnkpylplacgdfsmgegLAITIASPLMAVAMGImlrspplvIGFIIWCIvggaysidlppllrwkgnpLMAAVTIISMNGLLLLFPFFIHFQKivlgnpvaftkpVLFTAAYMVIWNAAIAFVKVTNSEIE
Flexible Loop (DISEMBL)
MLLQINPCSSFPLKYHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Low Complexity Region (SEG)
MLLQINPCSSFPLKYHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCvsiiaallsvsllplqspADFTPKLIIEAFKCMVPaimmnnyanainQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Disordered region (IsUnstruct)
*******CSSFPLKYHPLQHAVALAAQD********ASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVT*****
Disordered Region (DISOPRED)
*******CSS************************************KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSE**
Disordered Region (DISEMBL)
MLLQINPCSSFPLKYHPLQHAVALAAQ*********ASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Disordered Region (DISPRO)
MLLQINPCSSFPLKYHPLQHAVALA**************SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLQINPCSSFPLKYHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.819	0.519	0.395	3e-39
B7FA90	404	Probable homogentisate ph	no	no	0.911	0.561	0.355	6e-37
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.811	0.492	0.330	1e-26
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.771	0.469	0.341	3e-26
Q0D576	379	Probable homogentisate ph	no	no	0.855	0.562	0.281	6e-14
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.718	0.463	0.313	6e-13
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.477	0.423	0.323	5e-07
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.353	0.312	0.344	3e-05

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 1/205 (0%)

Query: 38  STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPA 97
           S S  +      DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A
Sbjct: 86  SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAA 145

Query: 98  IMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPP 157
           +MMN Y   +NQL+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S P
Sbjct: 146 LMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWP 205

Query: 158 LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 217
           L     +  ++G AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G P
Sbjct: 206 LFWALFVSFMLGTAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query: 218 VAFTKPVLFTAAYMVIWNAAIAFVK 242
           + FT+P++F  A+M  ++  IA  K
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFK 289

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 133/228 (58%), Gaps = 1/228 (0%)

Query: 15  YHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLL 74
           + P   +   + Q   SS     S+S  + ++   DAFYR +RP++ +    +++SVSLL
Sbjct: 74  HRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLL 133

Query: 75  PLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 134
            +++ +D +P  +    + +V A+ MN Y   +NQL D+ IDKVNKP LPLA G++S   
Sbjct: 134 AVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPAT 193

Query: 135 GLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 194
           G+A+  A   M+  +G  + S PL +   I  I+G AYSI+L P LRWK + ++AA+ I+
Sbjct: 194 GVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINL-PFLRWKRSAVVAALCIL 252

Query: 195 SMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
           ++  +++   FF+H Q  V   P  FT+P++F  A+M  ++  IA  K
Sbjct: 253 AVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFK 300

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 40  SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIM 99
           S    +N   D FY+  RPY+  +I+      SL+ ++  +D +    I   + +V  I 
Sbjct: 105 SIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVIC 164

Query: 100 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLV 159
           ++ +   +NQL D+ IDK+NKP LPLA G  S    + IT +S ++ +    ++ S PL 
Sbjct: 165 IHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLF 224

Query: 160 IGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVA 219
               I C+V  AY++DL PLLRWK  P++ A+  I+   +     FF+H Q  V   P  
Sbjct: 225 WTVFISCMVASAYNVDL-PLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT 283

Query: 220 FTKPVLFTAAYMVIWNAAIAFVK 242
           F +P++F  A + I+   IA  K
Sbjct: 284 FPRPLIFCTAIVSIYAIVIALFK 306

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 1/193 (0%)

Query: 50  DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 109
            AFY  + PY+ + I     S SLL ++  +D +   +I   + ++P + +  Y   +NQ
Sbjct: 114 SAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQ 173

Query: 110 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 169
           L D+ IDK+NKP+LP+A G FS   G+ I+ A   ++     +  S PL+   ++     
Sbjct: 174 LYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSW 233

Query: 170 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 229
            AYSID+ PLLRWK  P +AA+ +IS   L L   +F H Q +VL  P+ F + + F  A
Sbjct: 234 TAYSIDV-PLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVA 292

Query: 230 YMVIWNAAIAFVK 242
           +M  ++  +A  K
Sbjct: 293 FMTFYSLGLALSK 305

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 14/227 (6%)

Query: 19  QHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLP--- 75
           + AV + +Q G +  + L+ T     L+   D+ +R  RP++      AL S++L+    
Sbjct: 59  RDAVRVCSQAGAAGPAPLSKT-----LSDLKDSCWRFLRPHTIRG--TALGSIALVARAL 111

Query: 76  LQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEG 135
           +++P      L+ +AF  +V  I  N Y   INQ+ D+ IDKVNKPYLP+A GD S+   
Sbjct: 112 IENPQLINWWLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTA 171

Query: 136 LAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 195
             + +       ++ +    P +   + +   +G  YS+  PP  R K  P+ A + I +
Sbjct: 172 WLLVVLFAAAGFSIVVTNFGPFITSLYCLGLFLGTIYSV--PP-FRLKRYPVAAFLIIAT 228

Query: 196 MNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
           + G LL F  + +  +  LG    ++ PV F   ++ ++   IA  K
Sbjct: 229 VRGFLLNFGVY-YATRAALGLTFQWSSPVAFITCFVTLFALVIAITK 274

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 25/204 (12%)

Query: 50  DAFYRLTRPYSCVSIIAALLSVSLLP---LQSPADFTPKLIIEAFKCMVPAIMMNNYANA 106
           +A +R  RP++      AL S +L+    +++       L+++A   ++  I  N Y   
Sbjct: 92  NACWRFLRPHTIRG--TALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVG 149

Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
           INQ+ D+ IDKVNKPYLP+A GD S+     + I     A+A G+      LV+GF    
Sbjct: 150 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVI---FFAIA-GL------LVVGFNFGP 199

Query: 167 IVGGAYSIDL--------PPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPV 218
            +   YS+ L        PP LR K  P+ A + I ++ G LL F  + H  +  LG P 
Sbjct: 200 FITSLYSLGLFLGTIYSVPP-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPF 257

Query: 219 AFTKPVLFTAAYMVIWNAAIAFVK 242
            ++ PV F  +++ ++   IA  K
Sbjct: 258 QWSAPVAFITSFVTLFALVIAITK 281

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 17/136 (12%)

Query: 48  KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 106
           K  A+  ++RP + + SI+  L       + S + +  +LI+    C++P +++    NA
Sbjct: 3   KLGAYVEISRPKNALMSILGTLTG----WVNSTSVYDGRLILA---CLIPPLVLMA-GNA 54

Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
           IN   D  ID +NKPY P+  G  S  E L I IA  L  +A+ I L       GFI + 
Sbjct: 55  INDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL-------GFIEFL 107

Query: 167 IVGGAYSIDLPPLLRW 182
           IV  A+S+      RW
Sbjct: 108 IV-TAFSLSWYAYARW 122

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
           IN + DV IDK+NKPY P+  G  S+ +  A++IA  ++ +A+ I+L    LVI  +   
Sbjct: 56  INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALV--T 113

Query: 167 IVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196
            +G  Y         + GN L+A  T +S+
Sbjct: 114 AIGLIYYAKDLKKTGFYGNLLVATTTALSI 143

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
359476155	397	PREDICTED: probable homogentisate phytyl	0.875	0.549	0.419	4e-43
296082088	398	unnamed protein product [Vitis vinifera]	0.875	0.547	0.419	6e-43
224143266	284	predicted protein [Populus trichocarpa]	0.767	0.672	0.442	4e-42
295656253	401	homogentisate geranylgeranyl transferase	0.783	0.486	0.448	3e-39
219842170	411	homogentisate geranylgeranyl transferase	0.851	0.515	0.396	7e-39
171190284	317	homogentisate geranylgeranyl transferase	0.799	0.627	0.435	2e-38
377657555	394	homogentisate phytyltransferase [Brassic	0.771	0.487	0.419	1e-37
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.819	0.519	0.395	2e-37
171190282	404	homogentisic acid phytyltransferase [Ses	0.863	0.532	0.387	3e-37
297836742	393	predicted protein [Arabidopsis lyrata su	0.771	0.488	0.409	3e-37

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 141/224 (62%), Gaps = 6/224 (2%)

Query: 19  QHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQS 78
           ++ + ++++ GY S+ E  +      ++K+  AFY  +RP++ +  +  + SVSLLPL++
Sbjct: 76  RNPIHVSSEYGYPSKPEDQNH-----VSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 130

Query: 79  PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAI 138
            +D +P   +   K MVP+++MN Y   +NQ+ DV IDKVNKP LPLA GDFSM  G  I
Sbjct: 131 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 190

Query: 139 TIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 198
              S LM+V MGIM +SPPL    +I  ++G AYSI++ PLLRWK  PL+AA  I+ +  
Sbjct: 191 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEI-PLLRWKRYPLLAASCILIVRA 249

Query: 199 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
           +++   FF H QK VLG  + +TK V+F  A+M  ++  IA  K
Sbjct: 250 IVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFK 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 141/224 (62%), Gaps = 6/224 (2%)

Query: 19  QHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQS 78
           ++ + ++++ GY S+ E  +      ++K+  AFY  +RP++ +  +  + SVSLLPL++
Sbjct: 52  RNPIHVSSEYGYPSKPEDQNH-----VSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 106

Query: 79  PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAI 138
            +D +P   +   K MVP+++MN Y   +NQ+ DV IDKVNKP LPLA GDFSM  G  I
Sbjct: 107 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 166

Query: 139 TIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 198
              S LM+V MGIM +SPPL    +I  ++G AYSI++ PLLRWK  PL+AA  I+ +  
Sbjct: 167 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEI-PLLRWKRYPLLAASCILIVRA 225

Query: 199 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
           +++   FF H QK VLG  + +TK V+F  A+M  ++  IA  K
Sbjct: 226 IVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 125/192 (65%), Gaps = 1/192 (0%)

Query: 51  AFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 110
           +FY+ +RP++ +  +  + SVSLLP+++ ++ +P   +   K +VP+++MN Y   +NQL
Sbjct: 3   SFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQL 62

Query: 111 ADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGG 170
            DV IDKVNKPYLPLA GDFSMG G+AI  AS L + AMGIM +SP L    +I C++G 
Sbjct: 63  FDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLGS 122

Query: 171 AYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAY 230
            YSI+L P LRWK    +AA  I+ +  +++   FF+H QK VLG     T+ ++F  A+
Sbjct: 123 VYSIEL-PFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAF 181

Query: 231 MVIWNAAIAFVK 242
           M  ++A IA  K
Sbjct: 182 MCFFSAVIALFK 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 1/196 (0%)

Query: 47  KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 106
           +K DAFYR +RP++ +  I  + SVSLLPL S  D +P   +   K ++P+I MN Y   
Sbjct: 103 RKIDAFYRFSRPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVG 162

Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
           +NQL DV IDKVNKP LPLA G++SMG G AI  A  LM+ AMGI+ +SPP+    +I  
Sbjct: 163 LNQLFDVEIDKVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICF 222

Query: 167 IVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLF 226
           + G AYS++L PLLRWK N  +AA +I+ +  + +   FF H QK VLG P+ F + + F
Sbjct: 223 LFGSAYSVEL-PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCF 281

Query: 227 TAAYMVIWNAAIAFVK 242
               + ++   IA  K
Sbjct: 282 ATVCISMFTTVIALFK 297

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 134/217 (61%), Gaps = 5/217 (2%)

Query: 26  AQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPK 85
           ++DG     ++ S+S    + +  ++ Y+ +RP++ +  I  + SVSLLP+++  D +P 
Sbjct: 94  SEDG----DDICSSSKRGPILEHLNSLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPT 149

Query: 86  LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLM 145
             I   K +VP+++MN Y   +NQL DV IDKVNKPYLPLA G FSM  G+ I  AS L+
Sbjct: 150 YFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGKFSMATGILIVSASLLL 209

Query: 146 AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 205
           ++ MGI  +SPPL+   +I   +G  YSI+L P LRWK +  +AA  I+ +  +++   F
Sbjct: 210 SLYMGITFQSPPLLAALLISFALGSVYSIEL-PFLRWKKHAFLAASCILIVRAMVVQLAF 268

Query: 206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
           F+H QK VLG  +   + ++F  A+M  ++AAIA  K
Sbjct: 269 FVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFK 305

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 1/200 (0%)

Query: 43  QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 102
           Q L +K DAFYR TRP++ +  I  + SVSLLPL S  D +P   +   K M+P + +N 
Sbjct: 15  QNLWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNI 74

Query: 103 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 162
           Y   +NQL DV IDKVNKP LP+A G++SM  G AI  A  LM++ MGIM +SPP++   
Sbjct: 75  YVVGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCL 134

Query: 163 IIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTK 222
           ++    G AYSID+ PL RWK N  +AA+ I+ +  + +    F H Q+ VLG PV F++
Sbjct: 135 LVCFFFGTAYSIDV-PLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSR 193

Query: 223 PVLFTAAYMVIWNAAIAFVK 242
            + F    M ++   IA  K
Sbjct: 194 SLAFAIICMTLFVTVIALFK 213

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 50  DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 109
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 99  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 158

Query: 110 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 169
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  I+G
Sbjct: 159 LSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFILG 218

Query: 170 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 229
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G PV FT+P++F  A
Sbjct: 219 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPVMFTRPLIFATA 277

Query: 230 YMVIWNAAIAFVK 242
           +M  ++  IA  K
Sbjct: 278 FMSFFSVVIALFK 290

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 1/205 (0%)

Query: 38  STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPA 97
           S S  +      DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A
Sbjct: 86  SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAA 145

Query: 98  IMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPP 157
           +MMN Y   +NQL+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S P
Sbjct: 146 LMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWP 205

Query: 158 LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 217
           L     +  ++G AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G P
Sbjct: 206 LFWALFVSFMLGTAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query: 218 VAFTKPVLFTAAYMVIWNAAIAFVK 242
           + FT+P++F  A+M  ++  IA  K
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFK 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190282|gb|ACB42447.1| homogentisic acid phytyltransferase [Sesamum indicum]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 135/217 (62%), Gaps = 2/217 (0%)

Query: 26  AQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPK 85
           +  G+S ESE A + +  V     DAFYR +RP++ +    +++SVSLL +Q  +DF+P 
Sbjct: 86  SASGHSLESEPAKSPWRSV-QHAFDAFYRFSRPHTVIGTALSIISVSLLAVQKLSDFSPL 144

Query: 86  LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLM 145
                 + +V A++MN Y   +NQL+D+ IDKVNKPYLPLA G++S+  G+AI  +  ++
Sbjct: 145 FFTGVLEAIVAALLMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVTTGVAIVSSFAIL 204

Query: 146 AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 205
           +  +G ++ S PL     +  ++G AYS++L PLLRWK   ++AA+ I+S+  +++   F
Sbjct: 205 SFWLGYVVGSWPLFWALSVSFLLGTAYSVNL-PLLRWKRFAVIAAMCILSVRAVIVQIAF 263

Query: 206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
           ++H Q  V   P  FTKPV+F  A+M  ++  IA  K
Sbjct: 264 YLHIQTYVFRRPAVFTKPVIFATAFMSFFSVVIALFK 300

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 50  DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 109
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 98  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157

Query: 110 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 169
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G
Sbjct: 158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217

Query: 170 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 229
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G P+ FT+P++F  A
Sbjct: 218 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query: 230 YMVIWNAAIAFVK 242
           +M  ++  IA  K
Sbjct: 277 FMSFFSVVIALFK 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.819	0.519	0.341	1e-29
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.895	0.543	0.284	3.5e-22
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.791	0.484	0.303	4.4e-22
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.518	0.328	0.318	4.5e-12

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 70/205 (34%), Positives = 110/205 (53%)

Query:    38 STSFMQVLNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPX 97
             S S  +      DAFYR +RP++                   +D +P L     + +V  
Sbjct:    86 SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAA 145

Query:    98 XXXXXXXXXXXQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPP 157
                        QL+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S P
Sbjct:   146 LMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWP 205

Query:   158 LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 217
             L     +  ++G AYSI+LP LLRWK   L+AA+ I+++  +++   F++H Q  V G P
Sbjct:   206 LFWALFVSFMLGTAYSINLP-LLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query:   218 VAFTKPVLFTAAYMVIWNAAIAFVK 242
             + FT+P++F  A+M  ++  IA  K
Sbjct:   265 ILFTRPLIFATAFMSFFSVVIALFK 289

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 260 (96.6 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 64/225 (28%), Positives = 100/225 (44%)

Query:    19 QHAVALAAQDGYSSESELAST-SFMQVLNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXX 77
             ++ V   ++  +  E +     S    +N   D FY+  RPY+                 
Sbjct:    83 KYVVNAISEQSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVE 142

Query:    78 XXADFTPKLIIEAFKCMVPXXXXXXXXXXXXQLADVHIDKVNKPYLPLACGDFSMGEGLA 137
               +D +    I   + +V             QL D+ IDK+NKP LPLA G  S    + 
Sbjct:   143 KLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVI 202

Query:   138 ITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 197
             IT +S ++ +    ++ S PL     I C+V  AY++DLP LLRWK  P++ A+  I+  
Sbjct:   203 ITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLP-LLRWKKYPVLTAINFIADV 261

Query:   198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
              +     FF+H Q  V   P  F +P++F  A + I+   IA  K
Sbjct:   262 AVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFK 306

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 259 (96.2 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 60/198 (30%), Positives = 92/198 (46%)

Query:    45 LNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPXXXXXXXX 104
             +N   D FY+  RPY+                   +D +    I   + +V         
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   105 XXXXQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 164
                 QL D+ IDK+NKP LPLA G+ S    + IT +S ++ +    ++ S PL     I
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   165 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 224
              C+   AY++DLP LLRWK  P++ A++ I+   +     FF+H Q  V   P  F +P+
Sbjct:   227 CCMFAAAYNVDLP-LLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPL 285

Query:   225 LFTAAYMVIWNAAIAFVK 242
             +F  A + I+   IA  K
Sbjct:   286 IFCTAIVSIYAIVIALFK 303

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 43/135 (31%), Positives = 70/135 (51%)

Query:   109 QLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIG-FIIWCI 167
             Q+ D+ IDKVNKPYLP+A GD S+     + I   +  + + +     P +   + +   
Sbjct:   159 QIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLV-VGFNFGPFITSLYSLGLF 217

Query:   168 VGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFT 227
             +G  YS+  PPL R K  P+ A + I ++ G LL F  + H  +  LG P  ++ PV F 
Sbjct:   218 LGTIYSV--PPL-RMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFI 273

Query:   228 AAYMVIWNAAIAFVK 242
              +++ ++   IA  K
Sbjct:   274 TSFVTLFALVIAITK 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       219   0.00092  112 3  11 22  0.43    32
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.57u 0.10s 16.67t   Elapsed:  00:00:01
  Total cpu time:  16.57u 0.10s 16.67t   Elapsed:  00:00:01
  Start:  Fri May 10 23:47:56 2013   End:  Fri May 10 23:47:57 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-56
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-25
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	4e-07
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-06
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	3e-05
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	6e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	5e-04
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	0.001

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  181 bits (460), Expect = 2e-56
 Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 68  LLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 127
           + SVSLL ++S +DF+P       + +VPA++MN Y   +NQL D+ IDKVNKPYLPLA 
Sbjct: 3   ITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLAS 62

Query: 128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL 187
           G+FS+  G+AI  +  +M+  MG ++ S PL     +  ++G AYSI+L PLLRWK + +
Sbjct: 63  GEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINL-PLLRWKRSAV 121

Query: 188 MAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
            AA  I+++  +++   FF+H Q  VLG P  FT+P++F  A+M  ++  IA  K
Sbjct: 122 AAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFK 176

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  101 bits (254), Expect = 1e-25
 Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 8/194 (4%)

Query: 51  AFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL--IIEAFKCMVPAIMMNNYANAIN 108
           A ++ +RP++ +    ++L + L+ + + +  T  L  +       +  +  N Y   +N
Sbjct: 15  ALWKFSRPHTIIGTSLSVLGLYLIAI-AASSNTIALANLGLLLGAWIACLCGNVYIVGLN 73

Query: 109 QLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIV 168
           QL D+ ID++NKP+LPLA G+FS  +G  I I + ++A+ +  +L  P L+I   I  ++
Sbjct: 74  QLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALL-GPWLLITVGISLLI 132

Query: 169 GGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTA 228
           G AYS  LPP +R K  PL+AA+ I ++ G+++    F+HFQ  +LG  V     V    
Sbjct: 133 GTAYS--LPP-IRLKRFPLLAALCIFTVRGVIVNLGLFLHFQW-LLGGSVLIPPTVWLLT 188

Query: 229 AYMVIWNAAIAFVK 242
            +++++  AIA  K
Sbjct: 189 LFVLVFTFAIAIFK 202

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 97  AIMMNNYANAINQLADVHIDKV--NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 154
            +++    N +N   D  ID    NKP  PL  G  S  E L + +A  L+ + + ++L 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLLG 91

Query: 155 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVL 214
              L++G +   ++G  YS    P LR K  PL+  + +    GLL+L   +      + 
Sbjct: 92  PLLLLLGLLGL-LLGLLYS----PPLRLKRRPLLGELVVGLAFGLLILLGAYA-VGGDIP 145

Query: 215 GNPVAFTKPVLFTAAYMVIWNAA 237
              +    PV   +  +++ N  
Sbjct: 146 SPLLLLALPVFLLSLAILLTNDI 168

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 97  AIMMNNYANAINQLADVHIDKVNKP--YLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 154
             +  +    IN LAD  ID++N      PL  G  S+ E L + I   L+ +A+ ++L 
Sbjct: 56  FFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLN 115

Query: 155 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVL 214
               ++      ++  AY          K    +  + +    GL  L         + L
Sbjct: 116 PLAFLLSL-AALVLALAY-------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL 167

Query: 215 GNPVAFTKPVLFTAAYMVI 233
              +     +L+T  Y +I
Sbjct: 168 LAWLLLLAAILWTLGYDII 186

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 17/134 (12%)

Query: 48  KCDAFYRLTRP-----YSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 102
           K  A+  L RP          ++ A++++  LPL            EA    + A   + 
Sbjct: 3   KMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL-----------DEALLGFLTAFFASG 51

Query: 103 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 162
            ANA+N   D  +D++N+P  P+  G  S  E L + I   ++ +    ++     ++  
Sbjct: 52  SANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVI 111

Query: 163 IIWCIVGGAYSIDL 176
           ++  ++G  Y+  L
Sbjct: 112 LVS-VLGILYNWKL 124

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 99  MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 158
           +   ++ +IN   D  +D +N+P  P+  G  S+ E     +   +  + + ++L    L
Sbjct: 49  LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVL-GNWL 107

Query: 159 VIGFIIWCIVGGAYSIDLPPL-LR---WKGNPLMAA 190
           ++ F +  IV  A    +PP+ L+   W G P +  
Sbjct: 108 IVLFTVVGIV-LAVIYSMPPIKLKRNGWLGPPAVGL 142

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 51  AFYRLTRPYSCV-----SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN 105
            +  LTRP + V     + I A ++  +L   S                    +     N
Sbjct: 6   GYLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLA----------FAAVFLATGAGN 55

Query: 106 AINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 163
           AIN   D  ID++N+P  P+  G  S    LA +I      VA+  +L    L I   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALF 113

Length = 276

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 103 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 162
             N IN + D+ IDK+NKP  P+  G  S+ E    +I        +G++L     +  F
Sbjct: 52  GGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSIT----LFIVGLILSIFINIYAF 107

Query: 163 II 164
           +I
Sbjct: 108 LI 109

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.96
PLN00012	375	chlorophyll synthetase; Provisional	99.96
PRK12882	276	ubiA prenyltransferase; Reviewed	99.96
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.96
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.96
PRK12884	279	ubiA prenyltransferase; Reviewed	99.96
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.96
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.96
PRK13106	300	ubiA prenyltransferase; Reviewed	99.95
PRK12895	286	ubiA prenyltransferase; Reviewed	99.95
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.95
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.95
PRK12874	291	ubiA prenyltransferase; Reviewed	99.95
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.95
PRK12886	291	ubiA prenyltransferase; Reviewed	99.94
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.94
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.94
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.94
PRK08238	479	hypothetical protein; Validated	99.94
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.94
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.94
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.93
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.93
PRK12888	284	ubiA prenyltransferase; Reviewed	99.93
PRK13595	292	ubiA prenyltransferase; Provisional	99.93
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.92
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.92
PRK12873	294	ubiA prenyltransferase; Reviewed	99.92
PRK05951	296	ubiA prenyltransferase; Reviewed	99.92
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.92
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.91
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.91
PRK12876	300	ubiA prenyltransferase; Reviewed	99.91
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.9
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.88
PRK12871	297	ubiA prenyltransferase; Reviewed	99.87
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.86
PLN02776	341	prenyltransferase	99.86
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.85
PLN02922	315	prenyltransferase	99.85
PRK13105	282	ubiA prenyltransferase; Reviewed	99.84
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.83
PRK12872	285	ubiA prenyltransferase; Reviewed	99.83
PRK12875	282	ubiA prenyltransferase; Reviewed	99.81
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.81
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.79
PRK13591	307	ubiA prenyltransferase; Provisional	99.79
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.74
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.32
KOG4581	359	consensus Predicted membrane protein [Function unk	97.69
PRK13591	307	ubiA prenyltransferase; Provisional	94.31
PRK12872	285	ubiA prenyltransferase; Reviewed	92.91
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	92.33
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	91.22
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	90.85
PRK13105	282	ubiA prenyltransferase; Reviewed	90.69
PLN02922	315	prenyltransferase	90.35
PLN00012	375	chlorophyll synthetase; Provisional	90.21
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	90.15
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.48
PRK12392	331	bacteriochlorophyll c synthase; Provisional	88.94
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	88.08
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	87.95
PRK13106	300	ubiA prenyltransferase; Reviewed	87.81
PRK12875	282	ubiA prenyltransferase; Reviewed	87.78
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	87.48
PRK12888	284	ubiA prenyltransferase; Reviewed	87.44
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	86.66
PRK11383	145	hypothetical protein; Provisional	86.63
PRK12884	279	ubiA prenyltransferase; Reviewed	86.32
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	86.28
PRK12871	297	ubiA prenyltransferase; Reviewed	86.06
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	86.0
PRK12886	291	ubiA prenyltransferase; Reviewed	85.46
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	85.28
PRK05951	296	ubiA prenyltransferase; Reviewed	84.98
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	84.9
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	83.87
PRK12882	276	ubiA prenyltransferase; Reviewed	82.64
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	82.0

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.7e-35  Score=262.40  Aligned_cols=176  Identities=41%  Similarity=0.760  Sum_probs=157.5

Q ss_pred             HHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHH
Q 025718           72 SLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI  151 (249)
Q Consensus        72 ~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~  151 (249)
                      +++|.+...+.++..+...+.+++++++++.+...+|||+|+|+||+|||+||||||++|+++|+.+...+.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44554444455555566777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 025718          152 MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYM  231 (249)
Q Consensus       152 ~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~  231 (249)
                      .+|++++..+++.+++++++||.|+| |+++||+++++.+|+..+++..+++|+|.|+++.++|++..++.++++.++|+
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~  165 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM  165 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence            99988888877777789999998889 99999999999999999999999999999999999998777777888888899


Q ss_pred             HHHHHHHHHhhCCCCcc
Q 025718          232 VIWNAAIAFVKVTNSEI  248 (249)
Q Consensus       232 ~l~~~~~~i~kdi~Di~  248 (249)
                      ++|+.++|++||+||+|
T Consensus       166 ~~f~~~i~i~KDi~Die  182 (280)
T PLN02878        166 CFFSVVIALFKDIPDVE  182 (280)
T ss_pred             HHHHHHHHHHhhCcCch
Confidence            99999999999999998

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=5.7e-34  Score=258.47  Aligned_cols=205  Identities=27%  Similarity=0.463  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcc
Q 025718           40 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV  118 (249)
Q Consensus        40 ~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~-~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~i  118 (249)
                      +.+++..+.+++++|++|||+..++.++++.+.+++.....+ .+...+...+.+++....++.+.+.+|||+|+|+||+
T Consensus         4 ~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~i   83 (308)
T PRK12887          4 NPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRI   83 (308)
T ss_pred             chhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhc
Confidence            466777788999999999999999999998887766322111 1111222222333333444444444999999999999


Q ss_pred             CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHH
Q 025718          119 NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG  198 (249)
Q Consensus       119 nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g  198 (249)
                      |||+||++||++|+++++.+..++.++|+.+++.+|++.+.+++ .+.+++++||.  | |+++||++++++++++.++|
T Consensus        84 nkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~-~~~~lg~~Ys~--p-P~rlKr~~~~~~~~i~~~~g  159 (308)
T PRK12887         84 NKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVG-ISLLIGTAYSL--P-PIRLKRFPLLAALCIFTVRG  159 (308)
T ss_pred             CCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHcC--C-chhhcccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999988887766665 45589999999  8 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          199 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       199 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .++.+|++++.+. ..+++..++...++.++++++++++++++||++|+|+
T Consensus       160 ~i~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~eg  209 (308)
T PRK12887        160 VIVNLGLFLHFQW-LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG  209 (308)
T ss_pred             HHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            9999999887544 3344445667777888899999999999999999995

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.96  E-value=8.2e-29  Score=221.80  Aligned_cols=180  Identities=19%  Similarity=0.273  Sum_probs=145.7

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC  127 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~s  127 (249)
                      ++++|+|++||+++..++++++.|.+++.+.  ..++.   ..+..+++++++++++|++|||+|+|+||+|+|+||+|+
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3689999999999999999999999888532  12222   233467888999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718          128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  207 (249)
Q Consensus       128 G~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~  207 (249)
                      |++|+++|+.++.++.++|+.+++++|+.+..++++. .+..+.||.      ++||++.+||+.++...|..+..|...
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~-~~~~~~Ys~------~lKr~~~~~~~~vg~~~G~~~~~g~~~  149 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN-SILLYLYAK------DLKKTGLIGNLIVAYLTGLSFIFGGLA  149 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH------HHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988898888877654 356889976      799999999999999988776555532


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .      ++  .  ...++...+.+++..+++++||++|+|+
T Consensus       150 ~------~~--~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~  181 (279)
T PRK09573        150 V------FN--V--LRIIILFLCAFFSTWSREIVKDIEDIEG  181 (279)
T ss_pred             H------cc--c--hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            2      11  1  1222334456677889999999999985

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.96  E-value=1.6e-28  Score=227.76  Aligned_cols=191  Identities=18%  Similarity=0.192  Sum_probs=142.0

Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCC
Q 025718           45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPK-LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL  123 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~-~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~R  123 (249)
                      ..+++|+|++++||+++..++++++.|..... . .++... .....+..++++.++++++|++|||+|+|+|++|+|+|
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~g-~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R  158 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAASG-N-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR  158 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHcC-C-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence            45778999999999999999999999988532 1 122211 11122445677888999999999999999999999999


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMGIML-------RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  196 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l-------~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~  196 (249)
                      |+++|++|+++++.++.++..+++.+++++       |++.+.++++ +++..++||.  | |+++||++++|++.++..
T Consensus       159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~-gi~l~~~YS~--p-Pl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALG-GSLLSYIYSA--P-PLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHHhhhhcC--C-chhhhHhccHhHHHHHHH
Confidence            999999999999998888777777766554       3344445543 4467899999  8 999999999999876666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .+.+..++.+     ...| .  ++...++...+.+++.++++++||++|+|+
T Consensus       235 ~~~lp~~~g~-----a~~g-~--~s~~~illal~~~l~~lai~ivnd~~Die~  279 (375)
T PLN00012        235 YISLPWWAGQ-----ALFG-T--LTPDVVVLTLLYSIAGLGIAIVNDFKSIEG  279 (375)
T ss_pred             HHHHHHHHHH-----HHcC-C--CCHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            5533222221     1222 2  334455566778889999999999999985

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=5.2e-28  Score=216.23  Aligned_cols=182  Identities=21%  Similarity=0.253  Sum_probs=143.5

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC  127 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~s  127 (249)
                      ++|+|+|++||++...++++.+.|++++.+.   .+....  .++.+++.+++++++|++||++|+|+||+|+|+||+|+
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~~~--~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSPSL--TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchHHH--HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            4789999999999999999999999998542   121111  23467888999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718          128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  207 (249)
Q Consensus       128 G~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~  207 (249)
                      |++|++||+.++.++.++|+.+++++|+.+..++.+. ++..+.||.      ++||++.+||+.++...|..+.+|...
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~-~~~~~~Yt~------~lK~~~~~g~~~vg~~~g~~~~~g~~~  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFN-SLLLVLYAE------TLKGTPGLGNASVAYLTGSTFLFGGAA  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH------HHhcccchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988898887776644 356789987      899999999998887777554444422


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                            .+... . ...+.+..+.+++..++|++||++|+|+
T Consensus       151 ------~~~~~-~-~~~~~l~~~~fl~~~~~~~~~~~~D~e~  184 (276)
T PRK12882        151 ------VGTEG-L-LALLVLFALAALATLAREIIKDVEDIEG  184 (276)
T ss_pred             ------hcccc-h-HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence                  22111 1 1223334455677889999999999985

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.96  E-value=2.8e-28  Score=218.73  Aligned_cols=186  Identities=15%  Similarity=0.135  Sum_probs=143.1

Q ss_pred             HHHHhhhcchhhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCC
Q 025718           50 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACG  128 (249)
Q Consensus        50 ~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~-~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG  128 (249)
                      |+|++++||+++...+.+++.|..++.....+ +++.  ..++.++++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46889999999999999999999887421121 2222  12233567888999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718          129 DFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  207 (249)
Q Consensus       129 ~IS~~~A~~~~~~l~~~gl~l~~~l~~~~-l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~  207 (249)
                      ++|+++++.++.++..+++++++.++.+. ..+++ .+++.+++||.  | |+++||++.+|++.++..++.....+.+.
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~-~~~~~~~~Ys~--~-p~~lk~~~~~g~~~vg~~~~~~~~~~~~~  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTV-VGIVLAVIYSM--P-PIKLKRNGWLGPPAVGLSYEGLPWMAGHA  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhheecC--c-hhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887766 44443 44577899999  8 99999999999988776655332222221


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                           ..+ +  ++...++.....+++..+++.+||++|+|+
T Consensus       155 -----~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~  188 (283)
T TIGR01476       155 -----IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEG  188 (283)
T ss_pred             -----HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence                 112 2  334445556677788999999999999986

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.96  E-value=6.4e-28  Score=219.54  Aligned_cols=192  Identities=16%  Similarity=0.171  Sum_probs=147.9

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCc
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLII-EAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLP  124 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~-~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RP  124 (249)
                      ++++++|++++||+++..++++++.|...+..  .++...... ..+..++++.++++++|++|||+|+|+||+|+|+||
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            46789999999999999999888878776532  122221111 123345677889999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHH
Q 025718          125 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  204 (249)
Q Consensus       125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g  204 (249)
                      +++|++|+++++.++.++.++++++++.+|++...++++ +++..++||.  | |+++||++.+||+.++..+|....++
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~-~~~~~~~Yt~--g-P~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALL-GLFLAWIYSA--P-PLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH-HHHHHHHhcC--C-ccccccccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888877777654 4466899998  7 89999999999998887776543333


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          205 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .+..     .+. ..++...++.....+++..+++.+||++|+|+
T Consensus       178 g~~~-----~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~  216 (314)
T PRK07566        178 GAAA-----FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEG  216 (314)
T ss_pred             HHHH-----hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            3222     221 12334455566677788899999999999986

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=2.4e-27  Score=212.00  Aligned_cols=181  Identities=19%  Similarity=0.313  Sum_probs=146.5

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCccc
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA  126 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~  126 (249)
                      +++++|+|++||+++....++.+.|.++|.+.   .+..   ..+..+++.+++++++|++||++|+|+|++|||+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---CchH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            57899999999999999999999999888542   2221   23345688899999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 025718          127 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  206 (249)
Q Consensus       127 sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~  206 (249)
                      +|++|+++++.++.++.+++++++..+|+..+.++++ ++++++.||.      ++||++.++++.++...|..+..|..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~  148 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVIL-VSVLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGI  148 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888887777654 4477899977      79999999999888887755544443


Q ss_pred             HHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          207 IHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       207 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .      .+...   ...++.....+++..+.+++||++|+|+
T Consensus       149 ~------~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~  182 (279)
T PRK12884        149 A------VGELN---EAVILLAAMAFLMTLGREIMKDIEDVEG  182 (279)
T ss_pred             H------hCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            2      22221   1344455677788889999999999996

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.96  E-value=4.6e-27  Score=215.03  Aligned_cols=192  Identities=18%  Similarity=0.247  Sum_probs=136.3

Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCC
Q 025718           45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSP-ADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL  123 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~-~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~R  123 (249)
                      ...++|++++++||+++. ..++.+.|..+|.+.. +..... .+.....++...+.++++|++|||+|+|+|++|+|+|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            346789999999999988 4555566667775321 111111 1111122334455667889999999999999999999


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMGIMLRS-------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  196 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~-------~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~  196 (249)
                      |+|+|++|+++++.+..++.+++++++.+++.       +......+.+++++++||.  | |+++||+++.++..++..
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~-P~~lKr~~~~g~~~vGl~  162 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--P-PLKLKKNILTSAPAVGFS  162 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--C-chhhhccchhHHHHHHHH
Confidence            99999999999999999999999888776543       2222322344578899999  8 999999999899877766


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ++.....+..     ...+ .  ++...++..+..++++.+++++||++|+|+
T Consensus       163 ~~~~~~~~~~-----a~~g-~--~~~~~~~l~~~~~l~~~~~~~i~d~~D~eg  207 (331)
T PRK12392        163 YGFITFLSAN-----ALFS-D--IRPEVVWLAGLNFFMAIALIIMNDFKSVEG  207 (331)
T ss_pred             HHHHHHHHHH-----HHhc-C--CCHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence            6644332221     1222 2  334445566678889999999999999985

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.96  E-value=2.4e-27  Score=215.12  Aligned_cols=192  Identities=17%  Similarity=0.231  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCC
Q 025718           44 VLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPK-LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPY  122 (249)
Q Consensus        44 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~-~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~  122 (249)
                      ...+++|+|++++||+++..++++++.|...+..  .++... .....+..++++.++++++|++|||+|+|.|++|+|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~   88 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASGN--FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY   88 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence            3456788999999999999999998889876421  112211 1111233456778999999999999999999999999


Q ss_pred             CcccCCCCChHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHH
Q 025718          123 LPLACGDFSMGEGLAITIASPLMAVAMGIMLR-------SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS  195 (249)
Q Consensus       123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~-------~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~  195 (249)
                      ||+++|++|+++++.++..+.++++.++..+.       ++.+.+++ .+++.+++||.  | |+++||++.+|++.++.
T Consensus        89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~--g-P~~lk~~g~~G~i~vg~  164 (306)
T TIGR02056        89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSA--P-PLKLKQNGWLGNFALGA  164 (306)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcC--C-hhhhhhcccHHHHHHHH
Confidence            99999999999999999999999888876553       34455554 34577999999  8 99999999999987766


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          196 MNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       196 ~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ..+....++.+.     ..| .  ++...++.....++++.+++++||++|+|+
T Consensus       165 ~~~~~~~~~~~a-----~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~  210 (306)
T TIGR02056       165 SYIALPWWAGHA-----LFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEG  210 (306)
T ss_pred             HHHHHHHHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHH
Confidence            655443333221     122 2  334445666778889999999999999986

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=2.6e-27  Score=214.16  Aligned_cols=191  Identities=15%  Similarity=0.176  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CC
Q 025718           44 VLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KP  121 (249)
Q Consensus        44 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp  121 (249)
                      ...+++++|+|++||++......+.+.|+++|.++..  ++..   .++.+++.+++++++|++||++|+|+|++|  +|
T Consensus        10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~   84 (300)
T PRK13106         10 NTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK   84 (300)
T ss_pred             hhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence            3556899999999999999999988899999864322  3222   234568889999999999999999999998  57


Q ss_pred             CCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHH
Q 025718          122 YLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  201 (249)
Q Consensus       122 ~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~  201 (249)
                      +||+|+|++|++||+.+..++.+.++.++..+|+.+..++.+.. ++...|    |   .+||++.++|+.++..+|+.+
T Consensus        85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~-~~~~~Y----~---~~KR~t~~~~~~lg~~~~~~~  156 (300)
T PRK13106         85 NRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVA-LIAMSY----P---YMKRYTAFANYHLASIQGLAV  156 (300)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----h---HHhcCCcchHHHHHHHHHHHH
Confidence            99999999999999999888787787778888988888776544 556678    4   589999999999888887665


Q ss_pred             HHHHHHHHHHHHhcCCc--cccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          202 LFPFFIHFQKIVLGNPV--AFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       202 ~~g~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ..|....  .+....+.  ..+...+++.+...+++.+.+++|+.+|+|.
T Consensus       157 ~~G~~a~--~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~  204 (300)
T PRK13106        157 FSGAVAV--LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEF  204 (300)
T ss_pred             HHHHHHH--cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence            5555321  11111010  1112223344467788999999999999984

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=4.7e-27  Score=211.02  Aligned_cols=183  Identities=15%  Similarity=0.149  Sum_probs=143.0

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCCcc
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL  125 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~RPi  125 (249)
                      ++|+|+|++||++....+..++.|.++|.++.  .++..   .++.+++.+++++++|++||++|+|+||+|  +|+||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            47899999999999999998899999985421  22221   233456788999999999999999999998  689999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718          126 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  205 (249)
Q Consensus       126 ~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~  205 (249)
                      |+|++|++||+.+..++.++++.+++.+|+.++.++... ..+...|    |   ++||++.++|+.++...|..+..|+
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~-~~l~~~y----p---~~KR~t~~~~~~lG~~~g~~~l~g~  148 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIV-IFLFIID----P---FLKRYTAWRHIYMGSIIGLGVLAGY  148 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH----H---HHHhCccccHHHHHHHHHhHHHHHH
Confidence            999999999999999999999999888999988877643 3444555    5   8999999999877777664333333


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                            .+.++...+....+++.+...+|+.+.+++++.+|+|+
T Consensus       149 ------~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~  186 (286)
T PRK12895        149 ------LAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEY  186 (286)
T ss_pred             ------HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence                  33444444333444555677899999999999999984

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.95  E-value=4.8e-27  Score=211.34  Aligned_cols=183  Identities=19%  Similarity=0.247  Sum_probs=139.8

Q ss_pred             HHHHHHHHHhhhcch---hhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCC
Q 025718           45 LNKKCDAFYRLTRPY---SCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP  121 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~---~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp  121 (249)
                      .+.+++.+.+++|++   .+.....+...+..++..   +++.  +...+..+++++++++++|++||++|+|+||+|+|
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            334445555555554   444445555566666542   2222  23345567889999999999999999999999977


Q ss_pred             --CCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH
Q 025718          122 --YLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  199 (249)
Q Consensus       122 --~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~  199 (249)
                        +||+|||++|+++|+.+..++.++++++++.+|+.++.+.+. +.++.+.|    |   ++||++.+++++++..++.
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~-~~~l~~~Y----~---~~Kr~~~~~~~~lg~~~~~  152 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLA-ALVLALAY----P---FLKRFTFLPQLVLGLAFGL  152 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHH----H---HhhcCCchHHHHHHHHHHH
Confidence              999999999999999999999999999999999988777654 45788888    5   8999999999998888886


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 025718          200 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI  248 (249)
Q Consensus       200 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~  248 (249)
                      .+..|....      ++.  .+...+++.++..+++.+++++||++|+|
T Consensus       153 ~~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e  193 (289)
T COG0382         153 GALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIE  193 (289)
T ss_pred             HHHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            666555332      222  23455666778889999999999999998

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.95  E-value=4.2e-27  Score=210.47  Aligned_cols=180  Identities=19%  Similarity=0.257  Sum_probs=140.9

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC  127 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~s  127 (249)
                      .+|+|++++||+++..+.++.+.|.+++.+...  ++..   .+..+++.++.++++|++|||+|+|+|++|||+||+|+
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~--~~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIP--PIKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC--cHHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            368899999999999999998899888754211  1221   22345677888999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718          128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  207 (249)
Q Consensus       128 G~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~  207 (249)
                      |++|+++|+.++.++.++|+.+++.+|++++.++++. .++.++|+.      ++||++.++|+.++.+.|.....|...
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~-~~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~~a  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGA-YVLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGAIA  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888887776644 477899987      899999999999998888665444421


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                            .+ ...+  ..++ ..+.+++..+++++||++|+|+
T Consensus       150 ------~~-~~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~  181 (277)
T PRK12883        150 ------VG-RIGL--AGYL-AICAFLVNVAREIMKDIEDIEG  181 (277)
T ss_pred             ------hc-cccH--HHHH-HHHHHHHHHHHHHHhhhhhhcc
Confidence                  12 1222  2222 2345666779999999999985

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=6.4e-27  Score=210.90  Aligned_cols=188  Identities=18%  Similarity=0.201  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC
Q 025718           43 QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQS---PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN  119 (249)
Q Consensus        43 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~---~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in  119 (249)
                      ++.++++|+|+|++||++.+.+....+.|.++|...   ....++.   ..++.+++++++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            345678999999999999999999988898887521   1112332   2345678888999999999999999999998


Q ss_pred             C--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718          120 K--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  197 (249)
Q Consensus       120 k--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~  197 (249)
                      +  |+||+|||++|++||+.++.++.++++.+++.+|+.+..+++. .+++...|+       .+||++.++++.++...
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~-~~~~~~~Y~-------~~KR~t~~~~~~~g~~~  150 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFP-FLIVLGGYS-------YFKRFSSLAHLVLGLSL  150 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHh-------hhcccccccHHHHHHHH
Confidence            5  7999999999999999999999988888888889888877753 446788894       48999999999888887


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       198 g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      |+.+..|..      +.++...  .+.+++.+..++++.+.+.+++++|+|+
T Consensus       151 ~~~~l~G~~------av~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~  194 (291)
T PRK12874        151 GLAPIAGVV------AVLGEIP--LWSVFLALGVMFWVAGFDLLYSLQDMEF  194 (291)
T ss_pred             HHHHHHHHH------HHcCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            766555542      2233333  2333445567899999999999999984

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.95  E-value=1.8e-26  Score=206.90  Aligned_cols=183  Identities=18%  Similarity=0.166  Sum_probs=141.9

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCCcc
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL  125 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~RPi  125 (249)
                      ++|+|+|++||++........+.|.++|.++.  .++.   ..++.+++++++++++|++|||+|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            36899999999999999888888988885432  2332   2334578899999999999999999999998  789999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718          126 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  205 (249)
Q Consensus       126 ~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~  205 (249)
                      |+|++|+++|+.++.++.++++.++..+|..+..++.+.. +..++|    |   .+||++.++++.++...++.+..|.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~Y----~---~~Kr~~~~~~~~~g~~~~~~~~~g~  147 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVL-LVLIIY----P---YTKRFTFLCHYVLGSTYGLAPLAGW  147 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----h---hHhccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888888888877765443 557788    3   4899999999988877775554454


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ..      .++........++.....++++.+.+++||++|+|+
T Consensus       148 ~a------~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~  185 (282)
T TIGR01475       148 VA------VIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEF  185 (282)
T ss_pred             HH------HhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            22      222322113334455667888899999999999984

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.9e-25  Score=201.39  Aligned_cols=184  Identities=16%  Similarity=0.114  Sum_probs=140.2

Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CC
Q 025718           45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY  122 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~  122 (249)
                      ..+++++|+|++||++......+.+.|.++|..+.+  +..   ..++..++.+++++++|++|||+|+|+|++|+  |+
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            346789999999999999999888899998854322  222   12345678899999999999999999999986  68


Q ss_pred             CcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718          123 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  202 (249)
Q Consensus       123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~  202 (249)
                      ||+|+|++|++||+.+...+.+.++.+++.+|+.+..++++.. +....|+       .+||++.++++..+...++...
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~Y~-------~~Kr~t~~~~~~~g~~~~~~~l  150 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL-FFLLLYS-------YCKRFTALAHVVLGFCLALAPL  150 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-------hhhccccccHHHHHHHHHHHHH
Confidence            9999999999999999777666666666778888887776544 5578894       3899999999888877665543


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .|+ ..     ..+...  ...+++....+++..+.+++++++|.|+
T Consensus       151 ~g~-~a-----~~g~~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~  189 (291)
T PRK12886        151 GAW-IA-----IRGTIE--LPAILLGLAVLFWVAGFDILYALQDLEF  189 (291)
T ss_pred             HHH-HH-----HcCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHh
Confidence            333 22     223332  3334445556788889999999999885

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.94  E-value=6e-26  Score=204.58  Aligned_cols=170  Identities=15%  Similarity=0.254  Sum_probs=127.2

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCC
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYL  123 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~R  123 (249)
                      .+++++|+|++|||+|.++++.+. +.+++.. ..+.+  .+...+.++++.+++++++|++||++|+|+||+|  ||+|
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~-~~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGN-LLNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHh-hcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            357899999999999999998654 4455532 11111  1223445667778889999999999999999995  7999


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  203 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~  203 (249)
                      |+|||++|+++|+.++.++.++|+.+++++|+.+..+.. .++++.++||.      ++||++.+|+++++..+++-+..
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~-~~~~~~~~Ys~------~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLL-VYLVLNLAYSF------KLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhH------HhcCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888877666643 45678899987      99999999999887766644444


Q ss_pred             HHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Q 025718          204 PFFIHFQKIVLGNPVAFTKPVLFTAAYMVIW  234 (249)
Q Consensus       204 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~  234 (249)
                      |..      +.  +...|.|++.++.+.++|
T Consensus       157 G~~------a~--~~~~s~wll~~~~~~~lf  179 (295)
T PRK12324        157 GGV------AI--GVPLSPWLLLCTALLSLF  179 (295)
T ss_pred             HHH------Hh--CCCccHHHHHHHHHHHHH
Confidence            432      22  234667776555444433

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.94  E-value=9.8e-26  Score=203.14  Aligned_cols=184  Identities=18%  Similarity=0.156  Sum_probs=141.6

Q ss_pred             HHHHHHHHHhhhcchhhHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC-C
Q 025718           45 LNKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN-K  120 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in-k  120 (249)
                      .++++++|+|++||+++.+..   ++++.|.++|.++.  .++..   .+..+++.+++++++|++||++|+|+||+| +
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            346889999999999987766   46677888875432  23222   234567888999999999999999999874 3


Q ss_pred             -CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH
Q 025718          121 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  199 (249)
Q Consensus       121 -p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~  199 (249)
                       ++||+|||++|++||..++.++.++++.+++.+|+.++.++.... ++.++|    |   ..||++.++++.++..+|+
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y----~---~~KR~t~~~~~~lg~~~~~  151 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAV-PVIFLY----P---LAKRVFPVPQLVLAIAWGF  151 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHh----h---hhhhccccceeeehHHHHh
Confidence             589999999999999999999999999999889988888776543 567788    3   4899999999887777775


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          200 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       200 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .+..|+.      +.++...  ...+++.+..++++.+.+++++++|+|+
T Consensus       152 ~~l~g~~------a~~g~~~--~~~~~l~~~~~lw~~~~d~~~a~~D~e~  193 (290)
T PRK12870        152 AVLISWS------AVTGHLD--LGTWLLWAATVFWTLGFDTVYAMSDRED  193 (290)
T ss_pred             HHHHHHH------HHcCCCC--HHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            4333332      2233333  3344556677899999999999999985

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.94  E-value=2.2e-25  Score=200.28  Aligned_cols=184  Identities=18%  Similarity=0.206  Sum_probs=139.8

Q ss_pred             HHHHHHHHhhhcchhhHH---HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--
Q 025718           46 NKKCDAFYRLTRPYSCVS---IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--  120 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~---~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--  120 (249)
                      .+++++|+|++||+++.+   ..++++.|..+|.... ..++.   ..++.+++++++++++|++|||+|+|+|++|+  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            357899999999998776   4466778888875321 12322   23456788899999999999999999999753  


Q ss_pred             CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718          121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  200 (249)
Q Consensus       121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~  200 (249)
                      |+||+|+|++|++||+.++.++.++++.+++.+|+.++.++.+.. +..+.|    |   ..||++.++++..+...++.
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~Y----~---~~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAV-ILIVLY----P---LMKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhc----c---ccccCCcccHHHHHHHHHHH
Confidence            689999999999999999999999999988888888888776544 567888    3   39999999998776666543


Q ss_pred             HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ...|.      .+.++..  +...+++....++++.+.+++++++|+|+
T Consensus       152 ~l~~~------~a~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~  192 (285)
T PRK12847        152 ILMAF------AAVQNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKD  192 (285)
T ss_pred             HHHHH------HHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            32232      2233333  33444556677889999999999999996

>PRK08238 hypothetical protein; Validated

Probab=99.94  E-value=7.3e-26  Score=216.19  Aligned_cols=182  Identities=19%  Similarity=0.230  Sum_probs=139.0

Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCC
Q 025718           45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY  122 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~  122 (249)
                      .+.++++|++++|||+|.++++.+ .+.+++.. ..  +...+...+.++++.+++++++|++||++|+|+||+|  ||+
T Consensus       187 ~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~-~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~  262 (479)
T PRK08238        187 RPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQ-FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR  262 (479)
T ss_pred             CchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence            345789999999999999999874 47776632 11  2222334456778888999999999999999999997  789


Q ss_pred             CcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718          123 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  202 (249)
Q Consensus       123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~  202 (249)
                      ||+|||++|+++|+.++.+++++|+++++++|+.++.+. +.++++.++||.      ++||++.+++++++..+++-+.
T Consensus       263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~Ys~------~lKr~~~~~~~~la~~~~lr~~  335 (479)
T PRK08238        263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLAYSL------RLKRKVLVDVLTLAALYTLRII  335 (479)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhH------HhcCCccccchHHHHHHHHHHH
Confidence            999999999999999999999999999988887554443 455688899977      9999999999888777665444


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 025718          203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI  248 (249)
Q Consensus       203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~  248 (249)
                      .|..      +.+  +..+.|++.   +..+++..++++|+..|++
T Consensus       336 ~G~~------a~~--~~~s~wll~---~~~~~~l~la~~KR~~El~  370 (479)
T PRK08238        336 AGAA------AIG--VALSFWLLA---FSMFFFLSLALVKRYTELR  370 (479)
T ss_pred             HHHH------Hhc--cCHHHHHHH---HHHHHHHHHHHHHhHHHHH
Confidence            4432      222  344455543   3344566789999987764

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.94  E-value=4.4e-25  Score=200.18  Aligned_cols=184  Identities=13%  Similarity=0.188  Sum_probs=138.1

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCC
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYL  123 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~R  123 (249)
                      ++++++|++++||+++..+.++++.|+++|..+  +.++..   .+.++++.++.++++|++|||+|+|+|++|  +|+|
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            356789999999999999999999999998432  233322   234567888999999999999999999975  3699


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  202 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~-~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~  202 (249)
                      |+|||++|+++|+.++.++.++|+.++ +..|..+..++.+..+++.++||.      ++||++.++++..+...++.+.
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~------~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL------YLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH------HHhccCcHhHHHHHHHHHHHHH
Confidence            999999999999999999999998865 446777665655444457789976      8999999999877766665554


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHH---hhCCCCcc
Q 025718          203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAF---VKVTNSEI  248 (249)
Q Consensus       203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i---~kdi~Di~  248 (249)
                      .|..      +.++...  ...+++..+++++....+.   ++|.||.|
T Consensus       159 ~G~~------a~~g~~~--~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~  199 (306)
T PRK13362        159 VGYC------AVTGQFD--AGALILLLMFSLWQMPHSYAIAIFRFNDYA  199 (306)
T ss_pred             HHHH------HHcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence            5543      2333433  3444556677788777654   55556654

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.94  E-value=3e-25  Score=198.91  Aligned_cols=182  Identities=16%  Similarity=0.186  Sum_probs=132.7

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCcc
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPL  125 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RPi  125 (249)
                      ++|+|+|++||++.....++++.|.++|.+.  ..++..   .+..+++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            4689999999999999999999999998532  123322   2345678889999999999999999999975  79999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHH
Q 025718          126 ACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  204 (249)
Q Consensus       126 ~sG~IS~~~A~~~~~~l~~~gl~l~~~-l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g  204 (249)
                      |+|++|++||..++.++.++|+.++.+ +|+.+.....+..+++.++||.      ++||++.+ +..++...|....+|
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~------~lKr~~~~-~~~v~~~~g~~~~l~  148 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI------WLKPRTWL-NIVIGGFAGNAAALA  148 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc------ccccCChH-HHHHHHHHHHHHHHH
Confidence            999999999999999999999998877 7877644333344467788976      89999976 445555555454555


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH---HhhCCCCcc
Q 025718          205 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIA---FVKVTNSEI  248 (249)
Q Consensus       205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~---i~kdi~Di~  248 (249)
                      .+..     ..+..  +...+++...++++..+..   ..||.||.+
T Consensus       149 g~~a-----~~g~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~  188 (279)
T PRK12869        149 GYAS-----GTGSL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYR  188 (279)
T ss_pred             HHHH-----HhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence            5433     22232  3344445556666776665   346666653

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.93  E-value=5.6e-25  Score=198.74  Aligned_cols=183  Identities=14%  Similarity=0.122  Sum_probs=132.5

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCC
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYL  123 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~R  123 (249)
                      ++++++|+|++||+++....++++.|.++|.++  ..++..   .+..+++++++++++|++|||+|+|+|++|+  |+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            357899999999999999999999999998532  223322   2346788899999999999999999999975  799


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH-HH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL-LL  201 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~-l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~-~~  201 (249)
                      |+|+|++|++||+.++.++.++|++++++ .|+.+..++.+..+.+...||.      ++||++. ++..++...|. .+
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~------~lKr~~~-~~~~v~~~~g~~~~  154 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL------WLKRRTP-QNIVIGGAAGAMPP  154 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc------chhcCCc-cchHHHHHHHHhHH
Confidence            99999999999999999999999988754 5766666655444346778976      7999984 56555544442 23


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH---HhhCCCCcc
Q 025718          202 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIA---FVKVTNSEI  248 (249)
Q Consensus       202 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~---i~kdi~Di~  248 (249)
                      ..|.+      +..+..  +...+++.+..+++....+   -.||.||.+
T Consensus       155 l~g~~------a~~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~  196 (296)
T PRK04375        155 LIGWA------AVTGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYA  196 (296)
T ss_pred             HHHHH------HhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33332      222333  3334444555666664443   478888864

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.93  E-value=2.1e-24  Score=193.73  Aligned_cols=183  Identities=18%  Similarity=0.169  Sum_probs=136.8

Q ss_pred             HHHHHHHHhhhcchhhHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--
Q 025718           46 NKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--  120 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~---l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--  120 (249)
                      ++++++|+|++|++++..+.   ++.+.|..+|.....  +...   .+..+++.+++++++|++||++|+|+|++|+  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            35789999999977765555   446678777753222  2221   2345678889999999999999999999753  


Q ss_pred             CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718          121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  200 (249)
Q Consensus       121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~  200 (249)
                      |+||+|||++|+++|+.++.++.++++.+++.+|+.+..++++.. +..++|    |   ..||++.++++.++...|+.
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y----~---~~Kr~~~~~~~~~g~~~g~~  148 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAAL-ALAWIY----P---FMKRYTHLPQVVLGAAFGWG  148 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---hHHhcCcccHHHHHHHHHHH
Confidence            689999999999999999999999999988888988887776443 557888    4   58999999998887777765


Q ss_pred             HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +..|+.      +.++...  ...++......++......+++++|+|+
T Consensus       149 ~~~g~~------a~~~~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~  189 (282)
T PRK12848        149 IPMAFA------AVQGSVP--LEAWLLFLANILWTVAYDTQYAMVDRDD  189 (282)
T ss_pred             HHHHHH------HHhCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            444432      2233333  3334444556778888888888999885

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=1.1e-24  Score=195.88  Aligned_cols=183  Identities=14%  Similarity=0.105  Sum_probs=138.0

Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCc
Q 025718           48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQ-SPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP  124 (249)
Q Consensus        48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~-~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RP  124 (249)
                      ++++++|++||++.+......+.+.+.+.. .....++..   .++.+++.+++++++|++||++|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            368999999999988877666666666531 011223322   2345788899999999999999999999986  7999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHH
Q 025718          125 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  204 (249)
Q Consensus       125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g  204 (249)
                      +|+|++|++||+.++.++.++++.++..+|+.++.++.+.. +....|    |   +.||++.++++.++...++....|
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~-~~~~~Y----~---~~Kr~t~~~~~~lg~~~~~~~l~g  149 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAV-APLVVY----P---YAKRFTNFPHAILGLAQAVGPVGA  149 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---HhhcccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999888888888888888877776443 556788    4   589999999988777766544434


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          205 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      + .     +..+..  +...+++.+..++++.+.+++|+++|+|+
T Consensus       150 ~-~-----a~~g~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~  186 (284)
T PRK12888        150 W-I-----AVTGTW--SWPAVLLGLAVGLWIGGFDLIYACQDAEV  186 (284)
T ss_pred             H-H-----HHcCCC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3 2     222333  33444556677889999999999999985

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=4e-24  Score=191.64  Aligned_cols=184  Identities=17%  Similarity=0.234  Sum_probs=133.8

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcc
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPL  125 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi  125 (249)
                      ...++.+++++||..|+.+..++.+|...+.. ..++.+..   .+..+......+...|.+|||+|+|+|++|+|+||+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i   84 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW   84 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence            35667789999999999999999999877743 12221122   123455667788899999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHH
Q 025718          126 ACGDFSMGEGLAITIASPLM----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  201 (249)
Q Consensus       126 ~sG~IS~~~A~~~~~~l~~~----gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~  201 (249)
                      ++|++|+++++.+..++..+    ++.+++.+|+.++.+..+ ..++.++||.  | |+++|+++++|+++. ..+|..+
T Consensus        85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v-~~~l~~~YS~--p-PlRlK~rp~l~~l~~-~~~g~p~  159 (292)
T PRK13595         85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLL-YAALFVGYSL--P-PLRFKARPFLDGLSN-AAYALPL  159 (292)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHcc--C-ccchhcCcchhHHHH-HHHHHHH
Confidence            99999999999976655544    445566677777666654 4589999999  8 999999999999885 3444322


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          202 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       202 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ..|      ..+.|..   ..+..+  ....+|..+.+++||++|+|.
T Consensus       160 ~~~------~~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~Dieg  196 (292)
T PRK13595        160 ALP------ALALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPA  196 (292)
T ss_pred             HHH------HHHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHh
Confidence            222      1123322   123322  234577799999999999984

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.92  E-value=5e-24  Score=193.94  Aligned_cols=188  Identities=15%  Similarity=0.141  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHhhh---cchhhHHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC
Q 025718           43 QVLNKKCDAFYRLT---RPYSCVSIIAALLSVSLLPLQSPA---DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHID  116 (249)
Q Consensus        43 ~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~~lA~~~~~---~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D  116 (249)
                      +..+.++++|+|++   ||+......++++.|.++|.....   ..++.   ..++.+++++++++++|++|||+|+|+|
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD  100 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID  100 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34668999999999   888999999999999999854211   22322   2345678899999999999999999999


Q ss_pred             ccCC--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHH
Q 025718          117 KVNK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII  194 (249)
Q Consensus       117 ~ink--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~  194 (249)
                      ++|+  |+||+|+|++|++||+.++.++.++|+.+.+..|++++.++++. ++..+.|    |   .+||++.++++..+
T Consensus       101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~-~~~~~~Y----~---~~KR~t~~~~~~~G  172 (314)
T PRK12878        101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIAS-LAIVAAY----P---FMKRITWWPQFFLG  172 (314)
T ss_pred             cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH----H---HHHhcCCcchHHHH
Confidence            9764  68999999999999999999999999998887888887777654 4668889    4   49999999987665


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          195 SMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       195 ~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +..++....|++      +.++...+  ..+++....+++....+.+++++|+|+
T Consensus       173 l~~~~~~l~g~~------a~~g~~~~--~~~~l~~~~~~w~~~~~~~~a~~D~e~  219 (314)
T PRK12878        173 LAFSWGALMGWA------AHFGSLSL--AAVLLYAGSIAWTIGYDTIYAHQDKED  219 (314)
T ss_pred             HHHHHHHHHHHH------HHhCCCch--HHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            554443333422      22333333  333444556788889999999999985

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.92  E-value=6.7e-24  Score=191.10  Aligned_cols=185  Identities=18%  Similarity=0.187  Sum_probs=143.3

Q ss_pred             HHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccCcc--CCCCCc
Q 025718           49 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKV--NKPYLP  124 (249)
Q Consensus        49 l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~--e~D~i--nkp~RP  124 (249)
                      +|+|++++||+++..+.++++.|..+|... ..+++.   ..+..+++.+++++++|.+|||+|+  ++|+.  ++|+||
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            678999999999999999999999888431 223432   2344577889999999999999999  57854  678999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718          125 LACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  200 (249)
Q Consensus       125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~l----~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~  200 (249)
                      +++|++|++++..++.++.+++++++..+    +.+.+.+++ .+++.++.||.  | |+++|++ .+||+.++..+|+.
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys~--~-p~~~~~~-glge~~~~~~~G~~  153 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYTG--G-PKPYGYT-GLGELFVGVFFGLV  153 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhcC--C-CCccCCC-CcHHHHHHHHHHHH
Confidence            99999999999999988888776665443    544455544 34577899999  7 8888876 48999998888887


Q ss_pred             HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +..|.++. +.   + .  .+...++.+...+++..++.++||++|+|+
T Consensus       154 ~~~~~~~~-~~---~-~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~  195 (293)
T PRK06080        154 IVLGTYYL-QA---G-T--VDSAVFLPALPCGLLIGAVLLANNIRDIET  195 (293)
T ss_pred             HHHHHHHH-hc---C-C--CCHHHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence            66666443 11   1 1  335566777888899999999999999996

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=2.3e-24  Score=194.05  Aligned_cols=185  Identities=17%  Similarity=0.167  Sum_probs=137.9

Q ss_pred             HHHHHHHHhhhcchhhHHHHHH---HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--C
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAA---LLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--K  120 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~---~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--k  120 (249)
                      ++++++|+|++||+++.++.+.   .+.|.+++....  .+..   ..+..+++++++++++|++||+.|+|+||+|  +
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~--~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT   78 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP--PSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT   78 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence            3578899999998888777755   445666653321  1221   2345678999999999999999999999986  4


Q ss_pred             CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718          121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  196 (249)
Q Consensus       121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l----~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~  196 (249)
                      ++||+|+|++|++||+.++.++.++++.+++.+    |+.+..++.+.. ++..+|    |   .+||++.+.++..+..
T Consensus        79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~-~~~~~Y----~---~~KR~t~~~~~vlg~~  150 (294)
T PRK12873         79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLAL-PPILIY----P---SAKRWFAYPQAILALC  150 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHHHH----H---HHHhccccchHHHHHH
Confidence            799999999999999999999999998887665    566777776544 577889    3   4999999999877666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .++....|+      .+..+...+..+.+++.+..++|..+.++++.++|.|+
T Consensus       151 ~a~~~l~gw------~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~ed  197 (294)
T PRK12873        151 WGFAVLIPW------AAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRD  197 (294)
T ss_pred             HHhHHHHHH------HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            654444333      23344444434444445677899999999999999874

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=1.4e-23  Score=189.67  Aligned_cols=188  Identities=14%  Similarity=0.179  Sum_probs=143.9

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccCccCC---C
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLAD--VHIDKVNK---P  121 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D--~e~D~ink---p  121 (249)
                      +++|.+++.+||++......+++.|..+|.....++++..   .+..+++++++++++|++|||+|  +|.|+.++   |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            4689999999999999999999999888853223455432   34567889999999999999999  55565532   7


Q ss_pred             CCcccCCCCChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718          122 YLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  197 (249)
Q Consensus       122 ~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~----l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~  197 (249)
                      +||+++|++|+++++.++.++..+++.++..    .+...+.+++ .+++.++.||.  | |+++|++ .+|++.++..+
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~-~~~~~~~~Yt~--~-P~~lky~-glGe~~v~~~~  153 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLAL-LGVFLWTCYMG--P-PFFLKYR-WLGEHLVFYAW  153 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHcC--C-CcccCCC-CchHHHHHHHH
Confidence            8999999999999999999987777655432    2444555554 45688999999  8 8899865 69999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       198 g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      |+.+..|.++. ++    +..  +...+..+.-.+++..++..+||++|+|+
T Consensus       154 g~~~vlg~~~~-~~----~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~  198 (296)
T PRK05951        154 SHMLVMGLIYV-WL----GNL--SSPNLLAGVPLGLLMALVLLSNNLRDIED  198 (296)
T ss_pred             HHHHHHHHHHH-Hh----Ccc--cHHHHHHHHHHHHHHHHHHHHCCCccchh
Confidence            98888888655 22    122  23344555666777888999999999996

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.92  E-value=1.9e-23  Score=187.47  Aligned_cols=180  Identities=16%  Similarity=0.172  Sum_probs=132.5

Q ss_pred             HHHHhhhcchhhHHH---HHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCC
Q 025718           50 DAFYRLTRPYSCVSI---IAALLSVSLLPLQSPADF-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYL  123 (249)
Q Consensus        50 ~~~~~l~Rp~~~~~~---~l~~~~g~~lA~~~~~~~-~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~R  123 (249)
                      ++|+|++|++++.+.   .++...|..+|... ... ++..   .+...++++++++++|++|||+|+|+|++|+  |+|
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   77 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR   77 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence            467777776655444   55566788887431 112 2221   2345678889999999999999999999753  689


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  203 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~  203 (249)
                      |+|+|++|++||+.++.++.++|+.+++.+|+.+..++++. ++..+.|+       .+||++.++++..+...++....
T Consensus        78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~-~~~~~~Y~-------~~Kr~~~~~~~~~g~~~~~~~~~  149 (281)
T TIGR01474        78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVAS-LALVATYP-------FMKRITYWPQLVLGLAFGWGALM  149 (281)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHhc-------hhcccccccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888898888777654 46688884       49999999998777666655444


Q ss_pred             HHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          204 PFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       204 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      |.+      +.++..  +...+++.....++..+.+.+|+++|+|+
T Consensus       150 g~~------a~~g~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~  187 (281)
T TIGR01474       150 GWA------AVTGDL--STAAWVLYLANILWTLGYDTIYAMQDKED  187 (281)
T ss_pred             HHH------HHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            532      222333  33334345567888999999999999985

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=5e-24  Score=190.63  Aligned_cols=145  Identities=10%  Similarity=0.067  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 025718           90 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG  169 (249)
Q Consensus        90 ~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~  169 (249)
                      .+++++..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.++..+.++++.++...     ...... .+..
T Consensus        48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~~-~~i~  121 (299)
T PRK13592         48 EFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVGW-FLFL  121 (299)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHH
Confidence            3445666778899999999999999999999999999999999999999999977777765443     111111 2344


Q ss_pred             hHh-----cCcCCcccccccCchhHHHHHHHHHHHHHHHH--HHHH-HHHHHhcCCccccHHHHHHHHHHHHHHHHHHHh
Q 025718          170 GAY-----SIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP--FFIH-FQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFV  241 (249)
Q Consensus       170 ~~Y-----S~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~  241 (249)
                      +.|     +.      ++||.++.||+.++...|..+..|  ++.. +.....|.+ ......+++..+.++.++++|++
T Consensus       122 ~lY~~lm~a~------~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        122 YIYGTLMSFW------FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHH------HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            555     88      999999999999999999766444  2211 111122322 11221234456778889999999


Q ss_pred             hCCCCc
Q 025718          242 KVTNSE  247 (249)
Q Consensus       242 kdi~Di  247 (249)
                      ||+||.
T Consensus       195 KdieD~  200 (299)
T PRK13592        195 RKIRAP  200 (299)
T ss_pred             HhhcCC
Confidence            999994

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.91  E-value=2.2e-23  Score=186.82  Aligned_cols=146  Identities=21%  Similarity=0.228  Sum_probs=113.1

Q ss_pred             HHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCcccC
Q 025718           50 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLAC  127 (249)
Q Consensus        50 ~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RPi~s  127 (249)
                      |+|+|++||+++..+.++++.|.++|.+.. ..++..   .+..+++++++++++|++|||+|+|+|++|+  |+||+|+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999999985421 123322   2345788899999999999999999999964  7999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 025718          128 GDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  206 (249)
Q Consensus       128 G~IS~~~A~~~~~~l~~~gl~l-~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~  206 (249)
                      |++|+++|+.++.++.++|+.+ .+.+|+.+..++.+..+++.++||.      .+||++.++++. +...|...+++.|
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~------~lKr~~~~~~~v-~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI------WLKRRTPQNTVI-GGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh------hhccCCchhHHH-HHHHHHHHHHHHH
Confidence            9999999999999999999884 4457877777666544345789986      699998876654 4444544444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.91  E-value=2.4e-23  Score=187.42  Aligned_cols=186  Identities=16%  Similarity=0.113  Sum_probs=132.2

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHH---HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAAL---LSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--  120 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~---~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--  120 (249)
                      ++++++|+|++|.+++.+..+..   ..+..++.......++..   .++..++.+++++++|++||++|||+|++|+  
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            36789999999999887776654   344455431101112222   2345788899999999999999999999863  


Q ss_pred             CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718          121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  200 (249)
Q Consensus       121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~  200 (249)
                      |+||+|+|++|++||+.+..++.++++.+++.+|+.++.++.+. +++.+.|    |   .+||++.++++..+...++.
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~Y----~---~~KR~t~~~~~~lg~~~~~~  151 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASS-LLLVFTY----P---LMKRFTFWPQAFLGLTFNWG  151 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH----h---HHHhcCcchHHHHHHHHHHH
Confidence            69999999999999999999999999999888888888777654 4667888    4   49999999997655554433


Q ss_pred             HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ...|.      .+..+..... ....+.....++..+.+++...+|+|+
T Consensus       152 ~l~g~------~av~g~~~~~-~~~~l~~~~~~W~~~~d~~ya~~D~e~  193 (289)
T PLN02809        152 ALLGW------AAVKGSLDPA-VVLPLYASGVCWTLVYDTIYAHQDKED  193 (289)
T ss_pred             HHHHH------HHHhCCCChH-HHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            33332      2223333222 222234455667878888888888874

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=3.7e-23  Score=186.41  Aligned_cols=186  Identities=15%  Similarity=0.109  Sum_probs=133.1

Q ss_pred             HHHHHHHhhhcchh-hHHHHHHHHHHHHhcCC---CCCC---C-CHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcc
Q 025718           47 KKCDAFYRLTRPYS-CVSIIAALLSVSLLPLQ---SPAD---F-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV  118 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~-~~~~~l~~~~g~~lA~~---~~~~---~-~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~i  118 (249)
                      ++++.|.+++|-++ .+...+ ...|+++|..   ...+   . ++.   ..++..++.+.+++++|++||++|+|+|++
T Consensus         2 ~~~~~~~~~i~~~ht~Falpf-a~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~   77 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALF-LSASTVFALSLPEISFSLFSLGGIK---TISLGGSAFFCARTVGIIVNQIIDCAIDKK   77 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccccCCCcCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCC
Confidence            46789999999855 555544 4678888841   0011   1 222   234567888999999999999999999999


Q ss_pred             CC--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718          119 NK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  196 (249)
Q Consensus       119 nk--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~  196 (249)
                      |+  |+||+|+|++|++||+.+...+.++++.++..+|+.+..++.+.. ++..+|    |   ++||++.++++..+..
T Consensus        78 ~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~-~~~~iY----~---~~KR~t~~~~~vLGl~  149 (300)
T PRK12876         78 NPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLST-LLMIIY----P---YTKRVTFLCHWILGLV  149 (300)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---hHhcCCchhHHHHHHH
Confidence            86  699999999999999999988888888888889999988887554 555788    4   5999999999776666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccH--HHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          197 NGLLLLFPFFIHFQKIVLGNPVAFTK--PVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       197 ~g~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .+.....|+. +    +.+.+..+..  ..++.+...+++..+.+++++.+|+|.
T Consensus       150 ~~~~~l~~~~-A----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~  199 (300)
T PRK12876        150 YYLAILMNFF-A----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEF  199 (300)
T ss_pred             HHHHHHHHHH-H----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhh
Confidence            5543333322 1    2232222211  223334556677778999999999884

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.90  E-value=1.3e-22  Score=184.83  Aligned_cols=192  Identities=14%  Similarity=0.068  Sum_probs=143.5

Q ss_pred             HHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC----CCCCc
Q 025718           49 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN----KPYLP  124 (249)
Q Consensus        49 l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in----kp~RP  124 (249)
                      ++.+++++||++....+++++.|..+|.....++++..   .+..+++++++++++|++|||+|.+.|+-+    +++|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            67899999999999999999999988853223345432   334567888899999999999998754433    37899


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718          125 LACGDFSMGEGLAITIASPLMAVAM----GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  200 (249)
Q Consensus       125 i~sG~IS~~~A~~~~~~l~~~gl~l----~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~  200 (249)
                      +++|.+|+++++..+..+..++.++    .+..|...+.+++ .+++.++.||.  | |+++||++ +|++.++..+|+.
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt~--g-P~~l~y~g-LGe~~v~i~~G~~  154 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYTG--G-PLPLSRMP-LGEIFSGLTMGFG  154 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhcC--C-CcccccCc-cHHHHHHHHHHHH
Confidence            9999999999999999998887774    4445555555554 45688999999  8 99999988 9999999999988


Q ss_pred             HHHHHHHHHHHHHhcCC-c---------cccH----HHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          201 LLFPFFIHFQKIVLGNP-V---------AFTK----PVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       201 ~~~g~~~~~~~~~~g~~-~---------~~~~----~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +..|.++. +++..... .         .++.    ..++.+.-.++...+++++||+||+||
T Consensus       155 ~v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~  216 (317)
T PRK13387        155 IFLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDE  216 (317)
T ss_pred             HHHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            77777554 33211100 0         0000    112356677788888999999999996

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.7e-22  Score=180.44  Aligned_cols=183  Identities=16%  Similarity=0.223  Sum_probs=137.3

Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CC
Q 025718           45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY  122 (249)
Q Consensus        45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~  122 (249)
                      ..+++|+|++++||+....++++.+.|+++|.++  ..++..   .+.+.++..+..+++|++|+++|||+|++|+  ++
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            5578999999999999999999999999999742  233332   3456789999999999999999999999974  69


Q ss_pred             CcccCCCCChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHH
Q 025718          123 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  201 (249)
Q Consensus       123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~-~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~  201 (249)
                      ||+|+|+++|+||+.++.++.++|+.+. +..|+.+..++++..+++..+||.      ++||++...-+. +..-|...
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~------~lKR~T~~Nivi-Gg~aGa~P  161 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL------WLKRRTPQNIVI-GGFAGAMP  161 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCCcccceee-eecccccc
Confidence            9999999999999999999999999886 778998888888888899999999      999998665433 22323222


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHHH----HHHHHHHHhhCC
Q 025718          202 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMV----IWNAAIAFVKVT  244 (249)
Q Consensus       202 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~----l~~~~~~i~kdi  244 (249)
                      ++..|     .+..+.+.+..+.++...|+-    ++.+++-..+|.
T Consensus       162 pliGw-----aAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY  203 (304)
T COG0109         162 PLIGW-----AAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDY  203 (304)
T ss_pred             cccee-----eeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            22222     233445555555554444332    344555444443

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=4.9e-21  Score=173.12  Aligned_cols=184  Identities=15%  Similarity=0.104  Sum_probs=116.2

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC-------
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN-------  119 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in-------  119 (249)
                      +++++|++++||++.......+..|.++|.......++..+   +..+++++++.+++|++|||+|+|.|++|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~---~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELT---IKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            46889999999998888877777888787311112333221   22244455555778999999999999864       


Q ss_pred             --C--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHH---HHHHHHHhhHhcCcCCcccccccCchh--HH
Q 025718          120 --K--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIG---FIIWCIVGGAYSIDLPPLLRWKGNPLM--AA  190 (249)
Q Consensus       120 --k--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~---~l~~~~l~~~YS~~~P~p~~lKr~~~~--~~  190 (249)
                        |  ++||+|+|++|+++|+.++.++.++|++++..++.......   .+...+.++.|    |   .-||...+  +.
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y----~---~~kr~~~~p~~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFY----Q---VKKRNQKYPVAQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---cccccccccHHH
Confidence              2  58999999999999999999999999888776554222111   12222444555    3   23332111  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          191 VTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       191 l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +......+.. +++.+.     . .+.  .+...++...+.++++.+++.+||++|+|+
T Consensus       153 l~G~~~~~~~-~~~g~~-----~-~g~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~  202 (297)
T PRK12871        153 LLGRTDFTLF-PAAGYL-----C-YGQ--PDMTALLYMVFFYPWTMAHLGLNDFIDLEN  202 (297)
T ss_pred             HHHHHHHHHH-HHHHHH-----H-hCC--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            1111122222 222221     1 222  234445566788899999999999999986

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.86  E-value=1.8e-20  Score=168.40  Aligned_cols=177  Identities=15%  Similarity=0.119  Sum_probs=136.2

Q ss_pred             cchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccC--CCCCcccCCCCCh
Q 025718           57 RPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVN--KPYLPLACGDFSM  132 (249)
Q Consensus        57 Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~in--kp~RPi~sG~IS~  132 (249)
                      ||+++...+.+++.|..+|... ..+++..   .+++++++++++.++|.+|||+|.+  .|+.+  +|+|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWL-HAFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            8999999999999999998542 2455432   3456788899999999999999985  47543  5899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh----ch-----HHH-HHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718          133 GEGLAITIASPLMAVAMGIML----RS-----PPL-VIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  202 (249)
Q Consensus       133 ~~A~~~~~~l~~~gl~l~~~l----~~-----~~l-~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~  202 (249)
                      ++++..+.++++++.+++.++    ++     +.+ .++ +.+++.++.||.  | |+++|+++ +|++.++..+|++..
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--g-P~~l~y~g-LGE~~v~i~~G~l~v  151 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--G-SKPYGYAG-LGDISVLVFFGPLAV  151 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--C-CCccccCc-hHHHHHHHHHHHHHH
Confidence            999999998888766655432    32     133 344 345678899999  8 99999875 899999999999888


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      .|.++. +++    .  ++...++.+.-.++.+.+++.+||++|+||
T Consensus       152 ~g~~yv-q~~----~--~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~  191 (284)
T TIGR00751       152 LGTQYL-QAH----R--VDWVGILPAVATGLLACAVLNINNLRDIPT  191 (284)
T ss_pred             HHHHHH-hcC----C--CCHHHHHHHHHHHHHHHHHHHHcCcccchh
Confidence            887654 331    2  334445556667888899999999999996

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02776 prenyltransferase

Probab=99.86  E-value=3.6e-20  Score=169.56  Aligned_cols=162  Identities=15%  Similarity=0.067  Sum_probs=119.3

Q ss_pred             hhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCcccCCCCCh
Q 025718           55 LTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLACGDFSM  132 (249)
Q Consensus        55 l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RPi~sG~IS~  132 (249)
                      ++||+....++++.+.|+++|.++..  ++..   .++..++++++++++|++||++|+|+|++|+  ++||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~~---l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLPG---LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            57999999999999999999854322  3222   2345789999999999999999999999964  699999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025718          133 GEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQK  211 (249)
Q Consensus       133 ~~A~~~~~~l~~~gl~l-~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~  211 (249)
                      ++|+.++.++.++|+.+ ++++|+.+..++.+..+++...||.       +||++.+. ..++...|..-+++.|.    
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-------lKR~t~~~-~~lG~~~Ga~ppL~Gw~----  143 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-------LKQIHPAN-TWVGAVVGAIPPLMGWA----  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-------HccCCchh-HHHHHHHHHHHHHHHHH----
Confidence            99999999999999854 5668988888877655566778953       99999774 56666666443444433    


Q ss_pred             HHhcCCccccHHHHHHHHHHHHHHH
Q 025718          212 IVLGNPVAFTKPVLFTAAYMVIWNA  236 (249)
Q Consensus       212 ~~~g~~~~~~~~~~~~~~~~~l~~~  236 (249)
                       +.++...+..++++  ..+++|..
T Consensus       144 -Avtg~~~~~~~~Lf--~~~~~Wq~  165 (341)
T PLN02776        144 -AASGQLDAGAMVLA--AALYFWQM  165 (341)
T ss_pred             -HHcCCCCHHHHHHH--HHHHHHHH
Confidence             33444444444433  34445544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.85  E-value=5.2e-20  Score=166.82  Aligned_cols=187  Identities=14%  Similarity=0.095  Sum_probs=143.4

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccCCCCC
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPYL  123 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~inkp~R  123 (249)
                      .++++.+++.+||+++...+.+++.|..+|.....++++..   .++.++++++++.++|.+|||+|.+  .|+. ++ +
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~-~   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KF-H   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc-c
Confidence            46688899999999999999999999999854223455432   3456788999999999999999987  7884 22 2


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH
Q 025718          124 PLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  199 (249)
Q Consensus       124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~----l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~  199 (249)
                      ..+++..++++....+.++..++..++.+    .+++.+.+++ ++++.++.||.  | |+++|+++ +|++.++..+|+
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~-~g~~~~~~YT~--g-P~~l~y~g-LGE~~v~l~~G~  158 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVL-LCCFLGYLYQG--P-PFRLGYQG-LGEPLCFLAFGP  158 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHhheccC--C-CcccCCCC-chHHHHHHHHHH
Confidence            34456668999998888888777665433    3444444444 55688999999  8 99999987 799999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          200 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       200 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +...|.++. +++      .++...++.+..+++.+.++..+||++|+||
T Consensus       159 l~v~g~~yv-~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~  201 (304)
T PRK07419        159 LAVAAALYS-QTP------SWSLIPLAASIILGLATSLILFCSHFHQVED  201 (304)
T ss_pred             HHHHHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhh
Confidence            888888654 231      2444566677788899999999999999997

>PLN02922 prenyltransferase

Probab=99.85  E-value=1e-19  Score=165.65  Aligned_cols=190  Identities=15%  Similarity=0.128  Sum_probs=140.9

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccCC--CC
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNK--PY  122 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~ink--p~  122 (249)
                      ++++.+++.+||++....+.+++.|..+|......+++..   .+++++++++++.+.|.+|||+|.+  .|+.++  |.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            5578899999999999999999999998854223455432   3456788999999999999999976  687543  33


Q ss_pred             CcccCCCCChHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718          123 LPLACGDFSMGEGLAITIASPLMAVAMGIML-----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  197 (249)
Q Consensus       123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l-----~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~  197 (249)
                      |++  |  |+++.+..+..+.++++...+.+     +++.+.++ +.+++.++.||.  | |+++|+++ +|++.++..+
T Consensus        90 ~~~--~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--g-P~pl~y~g-LGE~~v~i~f  160 (315)
T PLN02922         90 NLV--G--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--P-PFRLSYKG-LGEPLCFAAF  160 (315)
T ss_pred             Ccc--c--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--C-CcccccCc-chHHHHHHHH
Confidence            543  3  99999888888877766432221     33344444 456688999999  8 99999875 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCC-c---cccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          198 GLLLLFPFFIHFQKIVLGNP-V---AFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       198 g~~~~~g~~~~~~~~~~g~~-~---~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      |.+...|.|+. +++..+.. .   .++...++.++-.++.+.++..+||++|+||
T Consensus       161 G~l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~  215 (315)
T PLN02922        161 GPLATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDG  215 (315)
T ss_pred             HHHHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhh
Confidence            98877777654 33322111 1   2345567788888999999999999999997

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=1.5e-19  Score=162.14  Aligned_cols=181  Identities=18%  Similarity=0.128  Sum_probs=120.3

Q ss_pred             HHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718           49 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVP-AIMMNNYANAINQLADVHIDKVNKPYLPLAC  127 (249)
Q Consensus        49 l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~-~~l~~~a~~iiND~~D~e~D~inkp~RPi~s  127 (249)
                      +|.+++++||++|+...+++..|+++|.+ ..  ++..    ++..++ ....+.+-|.+|||+|+|.|+.|++++.. .
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            36789999999999999998889999942 22  2211    112222 22233333566999999999998665443 5


Q ss_pred             CCCChHHHHHHHHHHHHH-----HHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718          128 GDFSMGEGLAITIASPLM-----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  202 (249)
Q Consensus       128 G~IS~~~A~~~~~~l~~~-----gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~  202 (249)
                      |.+|++|..........+     ++.+....+++.+.++. .+++..+.||.  | |.++|++++.|+++.+..+.....
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~-~ai~~~~~YS~--~-p~rlk~~gl~d~~t~~~~f~~~~v  148 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLA-VSVFAVVAYSA--P-GLRFKERPFLDSLTSSTHFVSPAL  148 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhcC--C-CccccccchHHHHHHHHHHHHHHH
Confidence            889999874443333333     33333333555555554 45588899999  8 999999999999755544433344


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +|.+.      .++.  ++...++.+..+++++.+++++||+||+|.
T Consensus       149 ~G~~~------~~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~  187 (282)
T PRK13105        149 YGLVL------AGAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVA  187 (282)
T ss_pred             HHHHH------hhcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHh
Confidence            44432      1332  334456677788899999999999999984

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.83  E-value=5.6e-20  Score=160.77  Aligned_cols=144  Identities=23%  Similarity=0.349  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHhhhhccccccCcc--CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 025718           93 CMVPAIMMNNYANAINQLADVHIDKV--NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGG  170 (249)
Q Consensus        93 ~~l~~~l~~~a~~iiND~~D~e~D~i--nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~  170 (249)
                      ..+++++.+.++|.+||+.|+|+|+.  |||+||+++|++|++++..++.++.++++++++..++..+.+..+.. +.++
T Consensus        28 ~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~-~~~~  106 (257)
T PF01040_consen   28 GLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGF-LLGL  106 (257)
T ss_pred             HHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHH
Confidence            45566689999999999999999999  89999999999999999999999999999998888887777766444 6669


Q ss_pred             HhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          171 AYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       171 ~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +||.    |+++||+++++++.++..++..+..|.+.      .++.  .+.+.++...+.+++..+....+|++|+||
T Consensus       107 ~Ys~----~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  173 (257)
T PF01040_consen  107 LYSP----PLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD--PPPPPFLLAIFFFLLIFAIMFFNDIRDIEG  173 (257)
T ss_pred             HHhh----hhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc--ccHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            9984    88999999999999988887665555543      2222  244555566666788888899999999986

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=2.8e-19  Score=160.24  Aligned_cols=186  Identities=17%  Similarity=0.097  Sum_probs=125.0

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCccc
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA  126 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~  126 (249)
                      +-+++++++.|+.+......++..+.....  ..+...     ....+++.++.+.++|++||++|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            346889999999988887776554432210  011111     1234567788999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718          127 CGDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  205 (249)
Q Consensus       127 sG~IS~~~A~~~~~~l~~~gl~l-~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~  205 (249)
                      +++...+.+..+..+...+++.+ +...|+..+.++++. .+.++.||.  |+..++||.|.++|+.++..+|....++.
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIP-LILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            55444444444333333344333 222366666666544 477999998  52226999999999999999887655544


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +..     .+.  .++...++...++++...+++++||+||+|+
T Consensus       152 ~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~  188 (285)
T PRK12872        152 VYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEG  188 (285)
T ss_pred             HHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            332     111  1334455566777888899999999999985

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.81  E-value=2.7e-18  Score=154.17  Aligned_cols=180  Identities=16%  Similarity=0.254  Sum_probs=107.9

Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHH--HHHHHHHHhhhhccccccCccCCCC
Q 025718           46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPA--IMMNNYANAINQLADVHIDKVNKPY  122 (249)
Q Consensus        46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~-~~~~~l~~~l~~~l~~--~l~~~a~~iiND~~D~e~D~inkp~  122 (249)
                      ..+++.++++.||+++..+..+++.|..+|..+..+ +++.. .    ++++.  +..+...|++||++|+|+||.|+|+
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-~----~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-V----ALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-H----HHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            467889999999999999999999999998653222 23211 1    11221  2344555678999999999998654


Q ss_pred             ---Cccc-CCCCChHHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718          123 ---LPLA-CGDFSMGEGLAITIA-SPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  197 (249)
Q Consensus       123 ---RPi~-sG~IS~~~A~~~~~~-l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~  197 (249)
                         ||++ +|    +.+.....+ ...+++.+....++..... .+.++++.+.||.  | |+++|+++..+....+.. 
T Consensus        80 ~~~r~~~~s~----~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--p-P~rlk~~p~~~~~~~g~~-  150 (282)
T PRK12875         80 DREREVRYRG----DRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--P-PLRFKTTPVLDSLSNGLY-  150 (282)
T ss_pred             cCCCCccHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--C-CccchhccHHHHHHHHHH-
Confidence               4444 22    222222221 2233444433333332222 2345688899999  8 999999998776432211 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       198 g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                       .....+.|..     ..+.  .+.+.++.+  .+++..+++++||++|+|+
T Consensus       151 -~~~~~~~y~~-----~tg~--~~~~~l~~a--~~l~~~~~~~in~i~Die~  192 (282)
T PRK12875        151 -ILPGVAAYAL-----VSGS--LPPLLAVAG--GWLWAMGMHTFSAIPDIEP  192 (282)
T ss_pred             -HHHHHHHHHH-----HcCC--CcHHHHHHH--HHHHHHHHHHHHhccCHHH
Confidence             1111222221     1222  334444333  3588899999999999985

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.81  E-value=2.4e-18  Score=154.73  Aligned_cols=181  Identities=13%  Similarity=0.070  Sum_probs=133.9

Q ss_pred             HHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccCCCCCcccCCC
Q 025718           52 FYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPYLPLACGD  129 (249)
Q Consensus        52 ~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~inkp~RPi~sG~  129 (249)
                      +++.+||++....+.+++.|..+|.....++++..   .+++++++++.+.++|.+|||+|.+  .|+.+.  ....++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence            56899999999999999999999854223455443   2345788899999999999999976  488532  1122333


Q ss_pred             CChHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718          130 FSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  205 (249)
Q Consensus       130 IS~~~A~~~~~~l~~~gl~l~~----~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~  205 (249)
                      .|+++....+.++..++..++.    ..+++.+.++. .+++.++.||.  | |+++|+++ +|++.++.++|++...|.
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~-~g~~~~~~Yt~--g-P~~l~y~g-LGE~~v~l~~G~l~v~g~  151 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVG-LCCFLGYLYQG--P-PFRLGYQG-LGEPICWLCFGPLAIAAA  151 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhcC--C-CcccCCCC-ccHHHHHHHHHHHHHHHH
Confidence            4678888877777777655443    33333334443 46688999999  8 99999876 799999999999888777


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      ++. +++      .++...++.+..+++.+.++..+||++|+||
T Consensus       152 ~yv-qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~  188 (285)
T TIGR02235       152 LYA-QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVED  188 (285)
T ss_pred             HHH-hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            654 331      2445566677888899999999999999997

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.79  E-value=5.9e-18  Score=151.64  Aligned_cols=188  Identities=16%  Similarity=0.144  Sum_probs=143.4

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCc----cCC
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDK----VNK  120 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~----ink  120 (249)
                      ++.+.+++++|||++...+.+++.|..+|......+++   ...+++++++++++...|..|||+|.+  .|.    ..+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            44588999999999999999999999998642222332   234567789999999999999999976  575    356


Q ss_pred             CCCcccCCCCChHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718          121 PYLPLACGDFSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  196 (249)
Q Consensus       121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~----~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~  196 (249)
                      .++-+.+.+++++..+.+.+.+...+.+++.    ..+++.+.+++ .+++.++.||.  + |+++++.+ +|++.++.+
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~-l~~~~g~~YTg--G-p~PlgY~g-LGEi~~~vf  157 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGL-LCIAAGILYTG--G-PFPLGYMG-LGEIFVGVF  157 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHheeeecc--C-CcCcccCC-HHHHHHHHH
Confidence            6788888888999988888887776655433    23444344444 56688999999  8 89998765 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                      +|++...|.|+. |++      .++...++.+...++.+..+...||++|+||
T Consensus       158 fG~l~v~g~~yi-qt~------~~~~~~ll~slp~gil~~~Il~aNNirDie~  203 (303)
T COG1575         158 FGPLIVLGAYYI-QTG------RLSWAILLPSLPVGILIANILLANNLRDIEE  203 (303)
T ss_pred             HHHHHHHHHHHH-hcc------cchHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            998877777654 332      1334566677888888899999999999997

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.79  E-value=5e-18  Score=153.13  Aligned_cols=138  Identities=15%  Similarity=0.034  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCc
Q 025718           96 PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSID  175 (249)
Q Consensus        96 ~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~  175 (249)
                      .+.+...++|++||++|+|+|++|+|+||.+    |++.++.++.+..++|+.+++..|.+.  +++ ...+.++.||..
T Consensus        66 ~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~l-l~~l~g~lYS~G  138 (307)
T PRK13591         66 AGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LAF-LPFITGYLYSKG  138 (307)
T ss_pred             HHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HHH-HHHHHHHHhcCC
Confidence            4456678889999999999999999999987    899999999999999999998877533  333 334678999962


Q ss_pred             ---CCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718          176 ---LPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  249 (249)
Q Consensus       176 ---~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~  249 (249)
                         +|+|+++|+.+.+||+.++..+|..+..+. .   .  ....  + ........+.....++++++||++|+|+
T Consensus       139 lk~~P~plklK~~~glGnl~V~i~~G~~i~g~~-g---~--~~~~--~-~~~~~i~l~~~~~l~~~~iindirDiEG  206 (307)
T PRK13591        139 IKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA-G---S--YCGS--L-IPVGLIFLFFGVKLFINSCVYDFKDVKG  206 (307)
T ss_pred             CCCCCccccccCCCchhHHHHHHHHHHHHHHHH-H---h--hhhh--H-HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence               267789999999999999999886432211 0   0  1101  0 1111112222233467889999999985

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.74  E-value=9.5e-19  Score=153.20  Aligned_cols=173  Identities=16%  Similarity=0.173  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHhhhcchhhHHHHHHHH---HHHHhcCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHhhhhcccccc
Q 025718           40 SFMQVLNKKCDAFYRLTRPYSCVSIIAALL---SVSLLPLQSPADFTPKLIIEAFK-CMVPAIMMNNYANAINQLADVHI  115 (249)
Q Consensus        40 ~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~---~g~~lA~~~~~~~~~~~l~~~l~-~~l~~~l~~~a~~iiND~~D~e~  115 (249)
                      ++....+.++++|.|++|.+.++++.+...   ...++|.. ....+ ..  .++. .-.+.+++++++|+|||..|+|+
T Consensus        55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd-ag~~p-~~--~mL~LFG~GAllMRgAGCtINDlwDkdl  130 (353)
T KOG1381|consen   55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD-AGLLP-SI--KMLALFGVGALLMRGAGCTINDLWDKDL  130 (353)
T ss_pred             hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccC-CCccc-hh--HHHHHhcccHHHhccCCceehhhhhhhh
Confidence            455667788999999999999888876532   23344432 11121 11  1211 12578999999999999999999


Q ss_pred             Ccc--CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHH
Q 025718          116 DKV--NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTI  193 (249)
Q Consensus       116 D~i--nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v  193 (249)
                      |++  +.+.||++||++|+++|+.+..+...+|+.+...+|..+..++. .++...+.|    |   ..||.++++++  
T Consensus       131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~y----p---l~kr~TY~pq~--  200 (353)
T KOG1381|consen  131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITY----P---LMKRFTYWPQL--  200 (353)
T ss_pred             hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEe----e---hhhhcchhHHH--
Confidence            997  35799999999999999999999999999998889988877764 455666777    6   79999999995  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccccH--HHHHHHHH
Q 025718          194 ISMNGLLLLFPFFIHFQKIVLGNPVAFTK--PVLFTAAY  230 (249)
Q Consensus       194 ~~~~g~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~  230 (249)
                        +.|+.+++|..+.  +.+.++....+.  |+.+.+..
T Consensus       201 --vLgltfnwGAllG--w~A~~g~~~~s~~~plYls~v~  235 (353)
T KOG1381|consen  201 --VLGLTFNWGALLG--WCALKGSLSPSAVLPLYLSGVC  235 (353)
T ss_pred             --HHhhhcchhhhhc--chhhcCccChhhhhHHHHhhhh
Confidence              4566778888765  566776654433  44444433

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.32  E-value=6e-13  Score=119.42  Aligned_cols=143  Identities=17%  Similarity=0.168  Sum_probs=114.7

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCc
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP  124 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RP  124 (249)
                      ..++.|+||.||+....++++...|+.+|.+.   +++..   +++..+|+.+.++++|.+||+++.+.|++|+  +.||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            45789999999998888888888898888642   33322   2345789999999999999999999999975  6899


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718          125 LACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  203 (249)
Q Consensus       125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~-l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~  203 (249)
                      +++|++||..|..++.+....|+.+.++ +|+.+..++..-.+++..+|+-       +||.. +.|=.++.+.|.+.++
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP-------lKrih-iinTWvGavVGAIPPL  237 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP-------LKRIH-IINTWVGAVVGAIPPL  237 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc-------hhhhh-hhhhHHHHHhccCCcc
Confidence            9999999999999999999999877544 8888888887667788999974       99865 5555566666665443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.69  E-value=3.7e-06  Score=73.01  Aligned_cols=148  Identities=16%  Similarity=0.130  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccCccCCCCCc
Q 025718           47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKVNKPYLP  124 (249)
Q Consensus        47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~--e~D~inkp~RP  124 (249)
                      ++.+.|+...||+.....+.++..|..+|+.+...-++... ...++..+.+..+.++|+.|.|+|.  .+|++..-+|-
T Consensus        59 ~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrt  137 (359)
T KOG4581|consen   59 MKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRT  137 (359)
T ss_pred             HHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccchh
Confidence            67788999999999999999999999999753221222222 2223345556678999999999996  58988888999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHH---HHHhchHHH---HHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHH
Q 025718          125 LACGDFSMGEGLAITIASPLMAVAM---GIMLRSPPL---VIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG  198 (249)
Q Consensus       125 i~sG~IS~~~A~~~~~~l~~~gl~l---~~~l~~~~l---~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g  198 (249)
                      ++...+.+.+...++..+.-.|...   ...+++.-+   .+..+.++--.+.|+.    -+-+|.. -+|.+++.+.+|
T Consensus       138 lvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg----gigfkyi-algdliili~fg  212 (359)
T KOG4581|consen  138 LVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG----GIGFKYI-ALGDLIILILFG  212 (359)
T ss_pred             HHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec----ccceEEE-eccCEEEEEeec
Confidence            9999999999999999887775443   334555432   2222233344578887    3457754 477777667777


Q ss_pred             HH
Q 025718          199 LL  200 (249)
Q Consensus       199 ~~  200 (249)
                      .+
T Consensus       213 pi  214 (359)
T KOG4581|consen  213 PI  214 (359)
T ss_pred             hH
Confidence            54

>PRK13591 ubiA prenyltransferase; Provisional

Probab=94.31  E-value=0.18  Score=46.04  Aligned_cols=66  Identities=18%  Similarity=0.302  Sum_probs=38.9

Q ss_pred             hhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHH---HHHHHHh---c--hHHHHHHHHHHHHHhhHhcC
Q 025718          106 AINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMA---VAMGIML---R--SPPLVIGFIIWCIVGGAYSI  174 (249)
Q Consensus       106 iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~g---l~l~~~l---~--~~~l~l~~l~~~~l~~~YS~  174 (249)
                      ++||+.|+|.||.+ ++.-|+.=|+=   .+..+...+.+.+   .+.+...   .  +...+.+++..++..+.||.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~---~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQ---KTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            67999999999997 57888866643   3333333332222   1122222   2  33344455555678889998

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.91  E-value=0.44  Score=42.51  Aligned_cols=43  Identities=16%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHH
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPL  144 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~  144 (249)
                      +....-.++||..|+|.||.+ .|.-|..=|+   +.+..+...+.+
T Consensus       172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~  215 (285)
T PRK12872        172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNL  215 (285)
T ss_pred             HHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHH
Confidence            344455588999999999985 5788887776   444444444333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=92.33  E-value=0.55  Score=43.09  Aligned_cols=48  Identities=19%  Similarity=0.101  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHH
Q 025718           97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV  147 (249)
Q Consensus        97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl  147 (249)
                      ..+..+.....||+.|+|.||.+ |++-|.-=|   ++.+..+...+...+.
T Consensus       198 ~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~l~~~a~  246 (317)
T PRK13387        198 IIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAILFYASY  246 (317)
T ss_pred             HHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHHHHHHHH
Confidence            34445556788999999999996 567776444   5555555555544433

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=91.22  E-value=4.3  Score=36.28  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=24.9

Q ss_pred             HHHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718           97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus        97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      .++-+.+-..+||..|+|.|+.. .|.-|+.-|+
T Consensus       167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            34444555679999999999874 6888888884

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=90.85  E-value=1.3  Score=40.39  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhhhccccccCccCCC-CCcccCCCCChHHHHHHHHHHHHH
Q 025718           95 VPAIMMNNYANAINQLADVHIDKVNKP-YLPLACGDFSMGEGLAITIASPLM  145 (249)
Q Consensus        95 l~~~l~~~a~~iiND~~D~e~D~inkp-~RPi~sG~IS~~~A~~~~~~l~~~  145 (249)
                      +.+....+..+..|++.|.|.|++|+| .-|+   |+..+.+..+...+...
T Consensus       183 lp~gil~~~Il~aNNirDie~D~~~gk~TLav---rLG~~~~~~l~~~l~~~  231 (303)
T COG1575         183 LPVGILIANILLANNLRDIEEDIRNGKYTLAV---RLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHHHhcccccchhHHhcCCcceee---eeccHhHHHHHHHHHHH
Confidence            344445666677899999999999865 4444   34444454444444433

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=90.69  E-value=1.1  Score=40.63  Aligned_cols=52  Identities=12%  Similarity=0.107  Sum_probs=38.9

Q ss_pred             HHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 025718          100 MNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR  154 (249)
Q Consensus       100 ~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~  154 (249)
                      ...+..++||+-|.|.||.+ +++=|.   ++.++.+..++..+.+++.++...++
T Consensus       172 ~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        172 WGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36666799999999999986 566665   56678888888888777766544433

>PLN02922 prenyltransferase

Probab=90.35  E-value=1.3  Score=40.54  Aligned_cols=44  Identities=11%  Similarity=0.093  Sum_probs=29.3

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHH
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLM  145 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~  145 (249)
                      +..+.....||+-|+|.||++ |++-|.-=|   ++.+..+...+...
T Consensus       199 ll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~  243 (315)
T PLN02922        199 LTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVVRWAVLL  243 (315)
T ss_pred             HHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHHHHHHHH
Confidence            345566778999999999997 566776444   45555444444443

>PLN00012 chlorophyll synthetase; Provisional

Probab=90.21  E-value=1.4  Score=41.52  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      +...+-...||+-|+|.||+. +|.-|+.-|+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            345556678999999999985 7888987776

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=90.15  E-value=1.3  Score=40.51  Aligned_cols=44  Identities=11%  Similarity=-0.007  Sum_probs=28.9

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHH
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLM  145 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~  145 (249)
                      +..+.....||+-|+|.||.+ |++-|.-=|   ++.+..+...+...
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~ly~~l~~~  229 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIVRLG---TKRGAQLLPWIVGL  229 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceeeeec---hHhHHHHHHHHHHH
Confidence            345566678999999999996 667776444   45554444444443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=89.48  E-value=3.7  Score=36.84  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHH
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV  147 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl  147 (249)
                      +........||+.|+|.||.+ +++-|.-=|   .+.+..+...+..++.
T Consensus       179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~  225 (293)
T PRK06080        179 LLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAY  225 (293)
T ss_pred             HHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHH
Confidence            345555678999999999986 566666444   4555555544444433

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=88.94  E-value=1.4  Score=40.66  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=24.9

Q ss_pred             HHHHHHHHhhhhccccccCccC-CCCCcccCCCCC
Q 025718           98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS  131 (249)
Q Consensus        98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS  131 (249)
                      ++...+-..+||+.|+|.||.. +++-|+.=|+=.
T Consensus       190 ~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~  224 (331)
T PRK12392        190 FFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKN  224 (331)
T ss_pred             HHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhh
Confidence            3445555678999999999985 678888666443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=88.08  E-value=2.1  Score=39.12  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             HHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718          101 NNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus       101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      ..+....||+.|+|.||.. +|.-|+.-|+
T Consensus       202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            4444678999999999985 6888887765

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=87.95  E-value=2.4  Score=37.99  Aligned_cols=36  Identities=19%  Similarity=0.092  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCC
Q 025718           96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS  131 (249)
Q Consensus        96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS  131 (249)
                      +.++-+.+-..+|++.|+|.||.. .|.-|+.-|+-+
T Consensus       168 ~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  204 (281)
T TIGR01474       168 ANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT  204 (281)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence            344445556678999999999985 688888888543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=87.81  E-value=3.5  Score=37.56  Aligned_cols=40  Identities=13%  Similarity=0.198  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHH
Q 025718           96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEG  135 (249)
Q Consensus        96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A  135 (249)
                      +.++-+.+-.++|+..|+|.|+.. .|+-|+-=|+-+.+-+
T Consensus       185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~  225 (300)
T PRK13106        185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFA  225 (300)
T ss_pred             HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHH
Confidence            334445555688999999999875 5788887774443333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=87.78  E-value=8  Score=34.89  Aligned_cols=50  Identities=14%  Similarity=0.070  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHHHH
Q 025718           97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAM  149 (249)
Q Consensus        97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl~l  149 (249)
                      ..+...+...+||+.|+|.||+. +++-|.   ++..+.+..+..++..++.++
T Consensus       174 ~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~  224 (282)
T PRK12875        174 GWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAA  224 (282)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHH
Confidence            34445555788999999999985 667776   444566666666665555444

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=87.48  E-value=2.9  Score=38.04  Aligned_cols=41  Identities=20%  Similarity=0.194  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHH
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIAS  142 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l  142 (249)
                      +...+....||+.|+|.||++ +|.-|..-|+   +.+......+
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~---~~a~~~~~~l  235 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI---ETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcCh---HHHHHHHHHH
Confidence            345555678999999999985 6778876664   4444444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=87.44  E-value=4.4  Score=36.53  Aligned_cols=35  Identities=14%  Similarity=0.044  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718           96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF  130 (249)
Q Consensus        96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I  130 (249)
                      ...+-+.+-..+|++.|+|.||.. .|.-|+--|+=
T Consensus       167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~  202 (284)
T PRK12888        167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVR  202 (284)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCch
Confidence            334445566789999999999985 57788766653

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=86.66  E-value=3.3  Score=37.01  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=22.8

Q ss_pred             HHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718          101 NNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus       101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      ..+....||+.|+|.||.+ ++.-|+.=|+
T Consensus       174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       174 AHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            4445678999999999985 6788876666

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK11383 hypothetical protein; Provisional

Probab=86.63  E-value=9.9  Score=30.90  Aligned_cols=52  Identities=8%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 025718          193 IISMNG-LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSE  247 (249)
Q Consensus       193 v~~~~g-~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di  247 (249)
                      .+.++. ++..++.+..   +...++..+++--+...+|..-..-++.+-|++||.
T Consensus        76 ~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFgai~vQKn~RD~  128 (145)
T PRK11383         76 YMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA  128 (145)
T ss_pred             HHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence            334443 3445555433   355556666665555544443344568999999997

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=86.32  E-value=3.4  Score=36.71  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=24.0

Q ss_pred             HHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718           98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus        98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      ++.+.+-...||+.|+|.||.+ .|.=|..-|+
T Consensus       165 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        165 FLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            3444455788999999999985 5788876665

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=86.28  E-value=11  Score=33.71  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718           98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDF  130 (249)
Q Consensus        98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I  130 (249)
                      ++.+.+-...|++.|+|.|+.+ .|.-|+.-|+=
T Consensus       175 ~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~  208 (285)
T PRK12847        175 IFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK  208 (285)
T ss_pred             HHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence            3344444577999999999985 57888877753

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=86.06  E-value=2.6  Score=38.30  Aligned_cols=34  Identities=12%  Similarity=0.067  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718           97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF  130 (249)
Q Consensus        97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I  130 (249)
                      .++-+..-...||+.|+|.|+.+ +|.-|+.-|+-
T Consensus       184 ~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~  218 (297)
T PRK12871        184 FYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence            33445555688999999999985 68899988874

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=86.00  E-value=3.4  Score=37.28  Aligned_cols=46  Identities=9%  Similarity=-0.047  Sum_probs=30.9

Q ss_pred             HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHH
Q 025718           99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV  147 (249)
Q Consensus        99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl  147 (249)
                      +........||+-|+|.||.+ |++-|.-   +.++.+..+...+...+.
T Consensus       172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~~~l~~~~y  218 (285)
T TIGR02235       172 LATTLILFCSHFHQVEDDLAHGKRSPVVR---LGTKLAAKIVPWVISLSY  218 (285)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCcceehe---ecHHhHHHHHHHHHHHHH
Confidence            445566677999999999996 6677764   445566555555554443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.46  E-value=1.9  Score=38.98  Aligned_cols=30  Identities=17%  Similarity=0.168  Sum_probs=22.6

Q ss_pred             HHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718          101 NNYANAINQLADVHIDKVN-KPYLPLACGDF  130 (249)
Q Consensus       101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~I  130 (249)
                      +.+-..+|++.|+|.||.. .|.-|+.-|+=
T Consensus       175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~  205 (291)
T PRK12886        175 VAGFDILYALQDLEFDRKEGLHSIPAKLGVN  205 (291)
T ss_pred             HHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence            4343467889999999974 68888887764

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=85.28  E-value=6.5  Score=35.89  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718           97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus        97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      .++...+-.++||+.|+|.||.+ +++-|+-=|+
T Consensus       191 ~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~  224 (308)
T PRK12887        191 VLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGK  224 (308)
T ss_pred             HHHHHHHHHHHHhccchhhHHHcCCcchhHHHhH
Confidence            33455566688999999999985 5677765554

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=84.98  E-value=18  Score=32.72  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=23.6

Q ss_pred             HHHHHHhhhhccccccCccC-CCCCcccCCCCChHHH
Q 025718          100 MNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEG  135 (249)
Q Consensus       100 ~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A  135 (249)
                      ..+.....||+-|+|.||.+ |++-|.   ++..+.+
T Consensus       183 ~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a  216 (296)
T PRK05951        183 LMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA  216 (296)
T ss_pred             HHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence            34556778999999999986 556665   4555555

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=84.90  E-value=3.1  Score=37.15  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=23.7

Q ss_pred             HHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718           98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus        98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      ++.+.+-.++||+.|+|.|+.. .|.-|+.-|+
T Consensus       164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~  196 (279)
T PRK09573        164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence            3444455677999999999974 6788886664

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=83.87  E-value=4.5  Score=36.01  Aligned_cols=29  Identities=24%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             HHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718          101 NNYANAINQLADVHIDKVN-KPYLPLACGD  129 (249)
Q Consensus       101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~  129 (249)
                      ..+-...||+.|+|.||+. .|.-|+.-|+
T Consensus       167 ~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        167 NVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            3344467999999999985 6888887775

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=82.64  E-value=13  Score=33.02  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=28.2

Q ss_pred             HHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHH
Q 025718           98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIAS  142 (249)
Q Consensus        98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l  142 (249)
                      ++...+-..+||+.|+|.||.+ .|.-|+.-|+   +.+......+
T Consensus       167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~---~~t~~~~~~~  209 (276)
T PRK12882        167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV---RKALYVAAAF  209 (276)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH---HHHHHHHHHH
Confidence            3344455688999999999985 5788876665   4444444333

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=82.00  E-value=8.5  Score=34.49  Aligned_cols=36  Identities=11%  Similarity=0.062  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCC
Q 025718           96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS  131 (249)
Q Consensus        96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS  131 (249)
                      ..++-+..-...|.+.|+|.||.. .|.-|+.-|+=+
T Consensus       170 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  206 (282)
T PRK12848        170 ANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD  206 (282)
T ss_pred             HHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence            333444444567899999999985 588888777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00