Citrus Sinensis ID: 025743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MLLLSPSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccEEEEEEccccccEEEEEEEEcccccccccccEEEEccccccccccccccEEEEEEEccccEEEEEEcccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccEEEEEcccccEEEEEEcccccccEEEEEEEccccccccccccHEEcHHHccccccccccEEEEEEcccccEEEEEccccccccccccEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlllspsptseksTFVKQAIkigrpgyrvtkqfdpetkqRSLLFQieypeiedlskprhrfmsSFEQRVQPFDKRYQYLMFAAEPYEiiafkvpsteidkstpkffshwdpdskmfTLQLYfkskpvegnkpqaapaangavapppppppqgpppgvsagnaprappppmtgtlppppppmangprpmppggappapppppggsgtmanftpgtqvgrpptmpppppqgyggqqmpirppppppnmgq
Flexible Loop (DISEMBL)
mlllspsptsekstfvkqaikigrpgyrvtkqfdpetkqrslLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKStpkffshwdpdSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Low Complexity Region (SEG)
MLLLSPSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKpqaapaangavapppppppqgpppgvsagnaprappppmtgtlppppppmangprpmppggappapppppggSGTMANFTPGTQVGRpptmpppppqgyggqqmpIRppppppNMGQ
Disordered region (IsUnstruct)
*****************QAIKIGRPGYRVTK*********SLLFQIEYPEIE***********SFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF******************************************************************************************************************************
Disordered Region (DISOPRED)
********************KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF******************************************************************************************************************************
Disordered Region (DISEMBL)
*************TFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Disordered Region (DISPRO)
MLLL**SPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPV***************APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLSPSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q15428	464	Splicing factor 3A subuni	yes	no	0.411	0.219	0.647	3e-36
Q6AXT8	471	Splicing factor 3A subuni	yes	no	0.411	0.216	0.647	3e-36
A5PJN8	477	Splicing factor 3A subuni	yes	no	0.411	0.213	0.647	5e-36
Q54B65	215	Splicing factor 3A subuni	yes	no	0.427	0.493	0.654	8e-36
Q62203	475	Splicing factor 3A subuni	yes	no	0.370	0.193	0.617	4e-30
Q9P7L8	217	Pre-mRNA-splicing factor	yes	no	0.447	0.511	0.459	5e-22

>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 84/102 (82%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Homo sapiens (taxid: 9606)

>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 84/102 (82%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Rattus norvegicus (taxid: 10116)

>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 84/102 (82%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Bos taurus (taxid: 9913)

>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1

 Score =  150 bits (379), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 4/110 (3%)

Query: 17  KQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRY 76
           K+ IKIGRPGY++ KQ D +T Q SLLFQI+YPEIE   +PRHR MS+FEQRV+  +K Y
Sbjct: 106 KKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDY 165

Query: 77  QYLMFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 123
           QYL+FAAEPYE IAFK+P+ EID++T    KFF+HWD + K FTLQLYFK
Sbjct: 166 QYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 10/102 (9%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF          F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKF----------FFLQFHFK 203

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Mus musculus (taxid: 10090)

>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap62 PE=1 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 84/122 (68%), Gaps = 11/122 (9%)

Query: 1   MLLLSPSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHR 60
           +L +S S    K    K  +KIGRPGY+V+K  + E+ +  L FQI+YP+IE  +KPR+R
Sbjct: 101 LLGISQSHVQVK----KSVVKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYR 156

Query: 61  FMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQL 120
            MS++EQRV+  D+++QYL+ AAEPYE IAFK     ID++  KF+S+WD  +  +T+Q 
Sbjct: 157 IMSAYEQRVEAPDRKFQYLVVAAEPYESIAFK-----IDRAPGKFWSYWDAPT--YTIQF 209

Query: 121 YF 122
           ++
Sbjct: 210 FY 211


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.137    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,402,765
Number of Sequences: 539616
Number of extensions: 8828239
Number of successful extensions: 221692
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 3308
Number of HSP's that attempted gapping in prelim test: 49748
Number of HSP's gapped (non-prelim): 56664
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)

Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
224140247	334	predicted protein [Populus trichocarpa]	0.943	0.700	0.723	4e-66
255556836	327	Splicing factor 3A subunit, putative [Ri	0.895	0.678	0.735	7e-65
297739988	241	unnamed protein product [Vitis vinifera]	0.532	0.547	0.878	7e-64
225441145	357	PREDICTED: splicing factor 3A subunit 2	0.536	0.372	0.857	1e-62
449440151	341	PREDICTED: splicing factor 3A subunit 2-	0.512	0.372	0.889	2e-62
449501030	341	PREDICTED: splicing factor 3A subunit 2-	0.512	0.372	0.889	2e-62
356554761	349	PREDICTED: splicing factor 3A subunit 2-	0.955	0.679	0.613	3e-62
356550634	350	PREDICTED: splicing factor 3A subunit 2-	0.548	0.388	0.824	2e-60
262192723	253	hypothetical protein [Nicotiana tabacum]	0.532	0.521	0.796	1e-57
116787560	308	unknown [Picea sitchensis]	0.512	0.412	0.811	4e-56

>gi|224140247|ref|XP_002323495.1| predicted protein [Populus trichocarpa] gi|222868125|gb|EEF05256.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 175/242 (72%), Positives = 194/242 (80%), Gaps = 8/242 (3%)

Query: 10  SEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRV 69
           +++   +++ +KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIED +KPRHRFMSS+EQR+
Sbjct: 98  NKRKVNIRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSYEQRI 157

Query: 70  QPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG 129
           +  DKR+QYL+F+AEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK KP E 
Sbjct: 158 EANDKRFQYLLFSAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKLKPPEA 217

Query: 130 NKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP 189
           NKPQ+  AAN  V   PPPP   PP G+ AG +   PPP      PPPPP MANGPRPMP
Sbjct: 218 NKPQSVAAANSTVPSQPPPPL--PPQGLPAG-SRPPPPPMPASLPPPPPPAMANGPRPMP 274

Query: 190 PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQM---PIRPPPPPPNM 246
           PGGAPPAPPPPPGGSG M NFTPGTQ GRP +M   PP G+ GQQM    IRPP  PPNM
Sbjct: 275 PGGAPPAPPPPPGGSGAMVNFTPGTQAGRPSSM--LPPHGFLGQQMQGQTIRPPLLPPNM 332

Query: 247 GQ 248
           GQ
Sbjct: 333 GQ 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556836|ref|XP_002519451.1| Splicing factor 3A subunit, putative [Ricinus communis] gi|223541314|gb|EEF42865.1| Splicing factor 3A subunit, putative [Ricinus communis]

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 172/234 (73%), Positives = 185/234 (79%), Gaps = 12/234 (5%)

Query: 10  SEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRV 69
           +++   +++ +KIGRPGYRVTKQFD ETKQRSLLFQIEYPEIED +KPRHRFMSSFEQR+
Sbjct: 98  NKRKINIRKTVKIGRPGYRVTKQFDHETKQRSLLFQIEYPEIEDNTKPRHRFMSSFEQRM 157

Query: 70  QPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG 129
           QP+DKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK+KP E 
Sbjct: 158 QPYDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEA 217

Query: 130 NKPQAAPAANGAVAP--------PPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
           NK QA PA NG  AP        PPP  P  PPP          PPPP      PPPPPM
Sbjct: 218 NKSQAPPAPNGVAAPGVPPRSLPPPPQAPPPPPPPPQGLPPGSRPPPPPPQGSLPPPPPM 277

Query: 182 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQM 235
           ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPG QVGRPP     PPQG+  QQM
Sbjct: 278 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGAQVGRPPM----PPQGFSTQQM 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739988|emb|CBI30170.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 116/132 (87%), Positives = 122/132 (92%)

Query: 16  VKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKR 75
           V++ +KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDL+KPRHRFMSSFEQRVQ FDKR
Sbjct: 104 VRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKR 163

Query: 76  YQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAA 135
           YQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK+KP E NKPQ A
Sbjct: 164 YQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPA 223

Query: 136 PAANGAVAPPPP 147
            AANG  AP  P
Sbjct: 224 SAANGTTAPGTP 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441145|ref|XP_002266748.1| PREDICTED: splicing factor 3A subunit 2 [Vitis vinifera]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/133 (85%), Positives = 122/133 (91%)

Query: 11  EKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ 70
           ++   V++ +KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDL+KPRHRFMSSFEQRVQ
Sbjct: 99  KRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQ 158

Query: 71  PFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGN 130
            FDKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK+KP E N
Sbjct: 159 SFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEAN 218

Query: 131 KPQAAPAANGAVA 143
           KPQ A AANG  A
Sbjct: 219 KPQPASAANGTTA 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440151|ref|XP_004137848.1| PREDICTED: splicing factor 3A subunit 2-like [Cucumis sativus]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/127 (88%), Positives = 119/127 (93%)

Query: 16  VKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKR 75
           V++ +KIGRPGYRVTKQFD ETKQRSLLFQIEYPEIEDL+KPRHRFMSS+EQRVQPFDKR
Sbjct: 104 VRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKR 163

Query: 76  YQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAA 135
           YQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKP E NKP   
Sbjct: 164 YQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPV 223

Query: 136 PAANGAV 142
           PAANG V
Sbjct: 224 PAANGTV 230

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501030|ref|XP_004161259.1| PREDICTED: splicing factor 3A subunit 2-like [Cucumis sativus]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/127 (88%), Positives = 119/127 (93%)

Query: 16  VKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKR 75
           V++ +KIGRPGYRVTKQFD ETKQRSLLFQIEYPEIEDL+KPRHRFMSS+EQRVQPFDKR
Sbjct: 104 VRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKR 163

Query: 76  YQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAA 135
           YQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKP E NKP   
Sbjct: 164 YQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPV 223

Query: 136 PAANGAV 142
           PAANG V
Sbjct: 224 PAANGTV 230

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554761|ref|XP_003545711.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 160/261 (61%), Positives = 174/261 (66%), Gaps = 24/261 (9%)

Query: 6   PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
           P P   K T +++ +KIGRPGYRVTKQ+DPETKQRSLLFQIEYPEIEDL KPRHRFMSS+
Sbjct: 95  PQPHKRKVT-LRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLMKPRHRFMSSY 153

Query: 66  EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSK 125
           EQRVQPFDKRYQYL+FAAEPYEI+AFKVPSTEIDKSTP FFSHWDPDSKMFTLQLYFKSK
Sbjct: 154 EQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPNFFSHWDPDSKMFTLQLYFKSK 213

Query: 126 PVEGNKPQAAPAANG----AVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
           P E NKPQ A  ANG     V P P PPP   P           PP       P  PPP 
Sbjct: 214 PPEANKPQPASTANGTAPSGVPPRPLPPPPQGPLPPPPPPPQGLPPGAPMANPPRAPPPP 273

Query: 182 ANGPRPMPPGGAPPAPPPPPGGS-------GTMANFTPGTQVG-RPPTMPPP------PP 227
             G  P PP  A   P P P G          +A+ T G  +G RPP+MPPP      P 
Sbjct: 274 MPGSMPPPPMAATNGPRPAPSGGMPSIPPPPPVASGTSGFNMGARPPSMPPPQGFPSQPM 333

Query: 228 QGYGGQQMPIRPPPPPPNMGQ 248
           QG+G     +R PPPPPNMGQ
Sbjct: 334 QGHG-----VRLPPPPPNMGQ 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550634|ref|XP_003543690.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/137 (82%), Positives = 122/137 (89%), Gaps = 1/137 (0%)

Query: 6   PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
           P P   K T +++ +KIGRPGYRVTKQ+DPETKQRSLLFQIEYPEIEDL+KPRHRFMSS+
Sbjct: 95  PQPHKRKVT-LRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSY 153

Query: 66  EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSK 125
           EQRVQPFDK YQYL+FAAEPYEI+AFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSK
Sbjct: 154 EQRVQPFDKSYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSK 213

Query: 126 PVEGNKPQAAPAANGAV 142
           P E NKPQ A  ANG  
Sbjct: 214 PPEANKPQPATTANGTA 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262192723|gb|ACY30431.1| hypothetical protein [Nicotiana tabacum]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 117/133 (87%), Gaps = 1/133 (0%)

Query: 6   PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
           P P   K T +K+ +KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIED +KPRHRFMSSF
Sbjct: 105 PQPHKRKVT-LKRNVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSF 163

Query: 66  EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSK 125
           EQ++QPFDKRYQ+L+FAAEPYEII+FKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK+K
Sbjct: 164 EQKIQPFDKRYQFLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTK 223

Query: 126 PVEGNKPQAAPAA 138
           P E NK      +
Sbjct: 224 PPETNKTTTCSCS 236

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116787560|gb|ABK24557.1| unknown [Picea sitchensis]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/127 (81%), Positives = 114/127 (89%)

Query: 17  KQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRY 76
           ++++KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIE+ SKPRHRFMSSFEQRVQ +DKRY
Sbjct: 105 RRSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEEGSKPRHRFMSSFEQRVQAWDKRY 164

Query: 77  QYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAP 136
           Q+L+FAAEPYEIIAFKVPS EIDKST KFFSHWDPD+KMFTLQLYFK KP+E NK  A  
Sbjct: 165 QFLLFAAEPYEIIAFKVPSIEIDKSTSKFFSHWDPDTKMFTLQLYFKVKPMEANKGAAPA 224

Query: 137 AANGAVA 143
            A+G  A
Sbjct: 225 TASGTSA 231

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2060279	277	AT2G32600 [Arabidopsis thalian	0.504	0.451	0.769	1.1e-50
ZFIN|ZDB-GENE-040426-897	278	sf3a2 "splicing factor 3a, sub	0.471	0.420	0.618	2.7e-36
UNIPROTKB|A5PJN8	477	SF3A2 "Splicing factor 3A subu	0.483	0.251	0.606	1.9e-35
UNIPROTKB|G3MW14	411	SF3A2 "Splicing factor 3A subu	0.483	0.291	0.606	1.9e-35
UNIPROTKB|J9P6E2	478	SF3A2 "Uncharacterized protein	0.483	0.251	0.606	1.9e-35
UNIPROTKB|Q15428	464	SF3A2 "Splicing factor 3A subu	0.483	0.258	0.606	1.9e-35
RGD|1308627	471	Sf3a2 "splicing factor 3a, sub	0.483	0.254	0.606	1.9e-35
DICTYBASE|DDB_G0293876	215	sf3a2 "splicing factor 3A subu	0.427	0.493	0.663	1.2e-33
FB|FBgn0036314	264	CG10754 [Drosophila melanogast	0.483	0.454	0.568	1.2e-33
WB|WBGene00008683	222	repo-1 [Caenorhabditis elegans	0.463	0.518	0.589	1.2e-33

TAIR|locus:2060279 AT2G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 97/126 (76%), Positives = 111/126 (88%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P P  +++  V++ +KIGRPGYRVTKQ+DPE +QRSLLFQIEYPEIED  KPRHRFMSS+
Sbjct:    95 PQPL-KRNVSVRRTVKIGRPGYRVTKQYDPELQQRSLLFQIEYPEIEDNIKPRHRFMSSY 153

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSK 125
             EQ+VQP+DK YQYL+FAAEPYEIIAFKVPSTE+DKSTPKFFSHWDPDSKMFTLQ+YFK  
Sbjct:   154 EQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTEVDKSTPKFFSHWDPDSKMFTLQVYFKPT 213

Query:   126 PVEGNK 131
               E NK
Sbjct:   214 KPEPNK 219

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-040426-897 sf3a2 "splicing factor 3a, subunit 2" [Danio rerio (taxid:7955)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 73/118 (61%), Positives = 95/118 (80%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P+P   K   VK+ +KIGRPGY+VTKQ DPE  Q+SLLFQI+YPEI +   PRHRFMS++
Sbjct:    97 PAPEKVKVE-VKKFVKIGRPGYKVTKQRDPEIGQQSLLFQIDYPEIAEGIGPRHRFMSAY 155

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
             EQR++P D+R+QYL+FAAEPYE IAFKVPS EIDK+  +F++HW+ ++K F LQ +FK
Sbjct:   156 EQRIEPPDRRWQYLLFAAEPYETIAFKVPSREIDKAETRFWTHWNRETKQFFLQFHFK 213

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A5PJN8 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P+P   K   VK+ +KIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++
Sbjct:    97 PAPEKVKVE-VKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAY 155

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK-S 124
             EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK  
Sbjct:   156 EQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

Query:   125 KP 126
             KP
Sbjct:   216 KP 217

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MW14 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P+P   K   VK+ +KIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++
Sbjct:    97 PAPEKVKVE-VKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAY 155

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK-S 124
             EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK  
Sbjct:   156 EQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

Query:   125 KP 126
             KP
Sbjct:   216 KP 217

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P6E2 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P+P   K   VK+ +KIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++
Sbjct:    97 PAPEKVKVE-VKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAY 155

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK-S 124
             EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK  
Sbjct:   156 EQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

Query:   125 KP 126
             KP
Sbjct:   216 KP 217

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15428 SF3A2 "Splicing factor 3A subunit 2" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P+P   K   VK+ +KIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++
Sbjct:    97 PAPEKVKVE-VKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAY 155

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK-S 124
             EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK  
Sbjct:   156 EQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

Query:   125 KP 126
             KP
Sbjct:   216 KP 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

RGD|1308627 Sf3a2 "splicing factor 3a, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query:     6 PSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSF 65
             P+P   K   VK+ +KIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++
Sbjct:    97 PAPEKVKVE-VKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAY 155

Query:    66 EQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK-S 124
             EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK  
Sbjct:   156 EQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

Query:   125 KP 126
             KP
Sbjct:   216 KP 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

DICTYBASE|DDB_G0293876 sf3a2 "splicing factor 3A subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 73/110 (66%), Positives = 89/110 (80%)

Query:    17 KQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRY 76
             K+ IKIGRPGY++ KQ D +T Q SLLFQI+YPEIE   +PRHR MS+FEQRV+  +K Y
Sbjct:   106 KKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDY 165

Query:    77 QYLMFAAEPYEIIAFKVPSTEIDKST-P--KFFSHWDPDSKMFTLQLYFK 123
             QYL+FAAEPYE IAFK+P+ EID++T P  KFF+HWD + K FTLQLYFK
Sbjct:   166 QYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA;ISS

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0000389 "mRNA 3'-splice site recognition" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0036314 CG10754 [Drosophila melanogaster (taxid:7227)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 71/125 (56%), Positives = 93/125 (74%)

Query:     3 LLSPS-PTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRF 61
             LL+P  P  E   FVK    IGRPGYRVTKQ +    Q+SLLFQ++YPEI +   PRHRF
Sbjct:    97 LLAPEKPRVEPKKFVK----IGRPGYRVTKQRELSNGQQSLLFQVDYPEITESIVPRHRF 152

Query:    62 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 121
             MS++EQ+++P D+++QYL+FAAEPYE I FKVPS E++KS  KF++HW+ D+K F LQ  
Sbjct:   153 MSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSREVEKSEGKFWTHWNRDTKQFFLQFA 212

Query:   122 FKSKP 126
             FK +P
Sbjct:   213 FKFEP 217

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00008683 repo-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 69/117 (58%), Positives = 91/117 (77%)

Query:     8 PTSEKSTF-VKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFE 66
             P  +K+    K+ +KIGRPGY+VTK+ DP   Q++LLFQI+YPEI D   PRHRFMS++E
Sbjct:    97 PAPQKAAVETKKFVKIGRPGYKVTKERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYE 156

Query:    67 QRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
             Q++QP DKR+QYL+FAAEPYE I FK+PS E+DKS  KF++ W+ D+K F LQ+ FK
Sbjct:   157 QKIQPPDKRWQYLLFAAEPYETIGFKIPSREVDKSE-KFWTMWNKDTKQFFLQVAFK 212

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
COG5246	222	COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA	2e-29
smart01050	129	smart01050, CactinC_cactus, Cactus-binding C-termi	1e-17
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	8e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	3e-04
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-04
TIGR02784	1135	TIGR02784, addA_alphas, double-strand break repair	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.004
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004

>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and modification]

 Score =  109 bits (274), Expect = 2e-29
 Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 3/115 (2%)

Query: 10  SEKSTFVKQAI-KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR 68
            +K    KQ++ + G P Y+V    +P+  +R L  Q+ Y +      P++R +SS EQ 
Sbjct: 105 QQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSSLEQN 164

Query: 69  VQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           V+ +D+ ++YL+FA EPYE IAFK  + EID  +      WD ++  +TLQ +F 
Sbjct: 165 VEEYDESFRYLVFACEPYENIAFKFENKEIDFLSIYED--WDAETGTYTLQFFFL 217

Length = 222

>gnl|CDD|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 15  FVKQAIKIGRPGYRVTK---QFDPETKQRSLLFQIEYPEIEDLSK-PRHRFMSSFEQRVQ 70
           F +         Y  T       P    +   F I YP++ D  K PR+R  SSFE   +
Sbjct: 13  FNRVKTGYDWNKYNQTHYDNDNPPPKIVQGYKFNIFYPDLIDKGKAPRYRIESSFEI--E 70

Query: 71  PFDKRYQYLMF-AAEPYEIIAFKVPSTEIDKSTPK-FFSHWDPDSKMFTLQLYFK 123
             D     L F A  PYE IAFK+ + E D S    F S +  D+ +  LQ  FK
Sbjct: 71  KPDDDTCLLRFSAGPPYEDIAFKIVNREWDYSHRGGFKSSF--DNGILQLQFNFK 123

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain further upstream. Length = 129

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 24/120 (20%), Positives = 29/120 (24%)

Query: 125 KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 184
           KP    +  A         P    P   P    +A  AP A P         PP      
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 185 PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
           P   P   AP A P     +  +A   P         +P               P   P 
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 32/113 (28%), Positives = 35/113 (30%), Gaps = 1/113 (0%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P AA  +  A AP   P P    P  +A  AP A P P     P P PP   G  P    
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
            +PP    P           P       P  PP  P        P  P  P  
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPA-PPAAPAPAAAPAAPAAPAAPAG 505

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 144 PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGG 203
           PP   P Q  P       +     PP+   LP  PPP+     P      PP PP PP  
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQ- 264

Query: 204 SGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
                   P  Q   PP   P P  G    Q    PPP  P 
Sbjct: 265 ---QQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQ 303

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 124  SKPVEGNKPQAAPAANGAV---APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPP 180
            S P +  + +AA    G++   A PPPPPP   P   +  +A   PP P       P  P
Sbjct: 2677 SSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736

Query: 181  MANGPRPMPPG----GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMP 236
             A  P  +P G    G P  P  PP  +G  A   P      PP     P      +   
Sbjct: 2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796

Query: 237  IRPPPPPP 244
              P P  P
Sbjct: 2797 SLPSPWDP 2804

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 18/81 (22%), Positives = 19/81 (23%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
              A     A A           P   A  AP   PP       PP P  A      P  
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 192 GAPPAPPPPPGGSGTMANFTP 212
               A    P  +      TP
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/110 (22%), Positives = 27/110 (24%)

Query: 135 APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAP 194
              A GA AP    P        +A     A P       P   P  A  P P P   +P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 195 PAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
               P  G         P  Q    P   P P             P   P
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Length = 824

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 24/107 (22%), Positives = 27/107 (25%), Gaps = 12/107 (11%)

Query: 143 APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPG 202
             P  PPP    P       P+ PP      LP       N P   P    P     P G
Sbjct: 51  PSPQAPPPVAQLPQ----PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAG 106

Query: 203 GSGTMANFTPG--TQVGRPP--TMPPPPPQGYGGQQMPIRPPPPPPN 245
            +G      PG    V  P   T  P           P +       
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSP----LDQPAQQRALQQL 149

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 6/130 (4%)

Query: 125 KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRA-----PPPPMTGTLPPPPP 179
           K +   + +A           P PP Q  P G+    A          PP     P   P
Sbjct: 152 KMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHP 211

Query: 180 PMANGPRPMP-PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIR 238
                 + +P P  AP  PP PP               G    MPPPPPQ    QQ P +
Sbjct: 212 EQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQ 271

Query: 239 PPPPPPNMGQ 248
           P   PP   Q
Sbjct: 272 PQAQPPPQNQ 281

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 28/103 (27%), Positives = 29/103 (28%), Gaps = 18/103 (17%)

Query: 132 PQAAPAANGAVAPPPPP-----PPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPR 186
           P  AP      A  P P      P   P   +A N P   P   T T PP PP     P 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 187 PMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 229
           P  P     AP                  V   P   PP P  
Sbjct: 422 PHTP---ESAPKLTRAAI----------PVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 30/122 (24%), Positives = 33/122 (27%), Gaps = 2/122 (1%)

Query: 123 KSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA 182
              P E  +P A  A     AP P      P    +A     A P      +  P     
Sbjct: 606 SGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

Query: 183 NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 242
               P   GGA PA PPP       A   P       P   P      G    P   PP 
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPAPAAPA--APAGAAPAQPAPAPAATPPAGQADDPAAQPPQ 723

Query: 243 PP 244
             
Sbjct: 724 AA 725

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 23/121 (19%), Positives = 31/121 (25%), Gaps = 3/121 (2%)

Query: 128 EGNKPQAAPA---ANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 184
           EG  P   P     +              P   +   +     PP +    P  P     
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203

Query: 185 PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
           P        PPAP      +   +  +P      P    PPPP       +    P PP 
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263

Query: 245 N 245
            
Sbjct: 264 A 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 24/101 (23%), Positives = 24/101 (23%), Gaps = 1/101 (0%)

Query: 129 GNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 188
                 A A   A A P       P        AP   P P        P   A  P P 
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAP-PSPAGNAPAGGAPSPPPA 459

Query: 189 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 229
               A PAP P      T A          P   P  P   
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 28/121 (23%), Positives = 28/121 (23%), Gaps = 2/121 (1%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
                   AAPAA      P  P             AP A PP      P   PP A   
Sbjct: 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
              P   A    P PP             Q   PP   P P         P  P      
Sbjct: 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQP--PPPPAPAPAAAPAAAPPPSPPSEEEEM 785

Query: 246 M 246
            
Sbjct: 786 A 786

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 30/121 (24%), Positives = 31/121 (25%), Gaps = 3/121 (2%)

Query: 127 VEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPR 186
           V G  P AA            PP +   P   A  A  A P P      P     A  P 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 187 PMPPGGAPPA---PPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 243
              P   P     P    GG G  A          PP   P  P    G       P P 
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 244 P 244
            
Sbjct: 707 A 707

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 37/122 (30%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
           P   +     PA  G  AP  PPP   P P   A  A  AP  P       PP   A+ P
Sbjct: 660 PDASDGGDGWPAKAGGAAPAAPPPA--PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDP 717

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFT---PGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 242
              PP  A  A  P P     +               P  PPPPP           PPP 
Sbjct: 718 AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Query: 243 PP 244
           PP
Sbjct: 778 PP 779

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 1/121 (0%)

Query: 124  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
            +KP    +P     A  AV+         PP        P+APPPP     PPPPP    
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931

Query: 184  GPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 243
             P P P    P AP   P G+G  +   P   +G         P+    Q  P R  P  
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991

Query: 244  P 244
             
Sbjct: 2992 S 2992

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 21/97 (21%), Positives = 26/97 (26%)

Query: 110 DPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPP 169
           DP+S   + + +F            A AA  A A   P          +   AP A   P
Sbjct: 21  DPNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP 80

Query: 170 MTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGT 206
                P      A  P   P   A  AP         
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 29/116 (25%), Positives = 33/116 (28%), Gaps = 9/116 (7%)

Query: 132 PQAAPAANGAVAPPPPPPPQGP---PPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 188
           P AAPAA  A A         P    P   A  A R       G  P P P  A  P   
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA 461

Query: 189 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
               A    P     +   A   P          PPP       +++P     P P
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP------WEELPPEFASPAP 511

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 26/80 (32%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
           P    +P  APA   A   P    P G  P      AP A P P     P P    A  P
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

Query: 186 RPMPPGGAPPAPPPPPGGSG 205
              P   A PA P  P    
Sbjct: 485 PAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 20/100 (20%), Positives = 24/100 (24%), Gaps = 14/100 (14%)

Query: 143 APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP-PGGAPPAPPPPP 201
                 P        +A +AP A P       P P PP A  P   P P  A  A   P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 202 GGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 241
                                  P       +  P+R   
Sbjct: 98  APP-------------AAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPP--- 180
           ++      P AAPAA  +    PP      P    A  AP A P      +   P P   
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 181 ----MANGPRPMPPGGAPPAPPPPPGGSGTMANFTPG 213
                   P  + P  A  +  P P  +   A  TP 
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 28/122 (22%), Positives = 31/122 (25%), Gaps = 4/122 (3%)

Query: 126 PVEGNKPQAAPAANG-AVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA-- 182
                  Q APAA   A A P P  P   P    A  A             P P  +A  
Sbjct: 377 AAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAA 436

Query: 183 -NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 241
                  P G   PAP P    +        G +         P          P    P
Sbjct: 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

Query: 242 PP 243
           PP
Sbjct: 497 PP 498

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 21/110 (19%), Positives = 24/110 (21%)

Query: 136 PAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPP 195
           P  +G  A P             A  AP A  P        P    A          AP 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 196 APPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
              P P         +     G P   P P        +     P P   
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAA 474

Length = 700

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 135 APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAP 194
           APA   A    P P     PP         APP P       P  P A  P P P   A 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPP------PAAAPPVPP----AAPARPAAARPAPAPAPPAA 430

Query: 195 PAPPPP 200
            APP  
Sbjct: 431 AAPPAR 436

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 21/96 (21%), Positives = 24/96 (25%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
              A  A    A PP      P           + P P      P PP   + P P    
Sbjct: 696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 227
             PP PP P   +   A   P              P
Sbjct: 756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 24/113 (21%), Positives = 28/113 (24%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P+  P                   G +A  AP   P P     P    P    P P    
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
            A  A  P           +  +     P   PP P            PPPPP
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 132  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
              A PA  G  A P  PP    PP  +   AP A PP             +    P P  
Sbjct: 2744 VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803

Query: 192  GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
             A P        +      +P   +  P +  P  P        P  P PPPP
Sbjct: 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP--------PPPPGPPPP 2848

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 20/74 (27%), Positives = 21/74 (28%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P  APA        P      PPP  +    P   P         P P     P P    
Sbjct: 435 PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Query: 192 GAPPAPPPPPGGSG 205
            AP AP  P G   
Sbjct: 495 AAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 7/88 (7%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRA----PPPPMTGTLPPPPPPMANGPRP 187
           P AAP    A AP P PP            +P         P       P P  A  P P
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

Query: 188 MP---PGGAPPAPPPPPGGSGTMANFTP 212
                P  AP AP  P   +G     T 
Sbjct: 485 PAAPAPAAAPAAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 28/159 (17%), Positives = 37/159 (23%), Gaps = 12/159 (7%)

Query: 101 STPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAG 160
                 S                + P      Q  P+  G    P P PPQ P       
Sbjct: 88  GPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQ 147

Query: 161 -----------NAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMAN 209
                         +         LP PP  +     P      P   PP          
Sbjct: 148 TPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPP 207

Query: 210 FTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 248
                +  +P    P P Q      +P + P  PP + Q
Sbjct: 208 -QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 15/117 (12%), Positives = 24/117 (20%), Gaps = 5/117 (4%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P   P      A P         P  +         PP   + P   P +          
Sbjct: 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLL 423

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRP-----PTMPPPPPQGYGGQQMPIRPPPPP 243
            A        G +    +        RP       +    P     ++ P +     
Sbjct: 424 AARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 25/115 (21%), Gaps = 24/115 (20%)

Query: 131 KPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 190
           KP AA  A        P  P+   P      A            P   P  A        
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAP------AAAPVAQAAAAPAPAAAPAAAASA----- 413

Query: 191 GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
             A P    PP              V  P    P          + + P PP   
Sbjct: 414 -PAAPPAAAPPA------------PVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 27/105 (25%), Positives = 31/105 (29%), Gaps = 16/105 (15%)

Query: 142 VAPPPPPPPQGPPPGVSAGNAPRAPPP--PMTGTLPPPPPPMANGPRPMPPGGAPPAPPP 199
           + P P P P  P           AP P  P       P    A    P  P      PPP
Sbjct: 360 LVPVPAPQPAKP--------TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP 411

Query: 200 PPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
            P     +A   P T    P + P          + P   PP PP
Sbjct: 412 VP--PRPVAPPVPHT----PESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 7/108 (6%)

Query: 122 FKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
           F  +  +      +   + +   P  P P   P   S  + P AP            PP 
Sbjct: 172 FPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSF-----QSDTPPP 226

Query: 182 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 229
           +      P    PP P  PP             +   P     P P G
Sbjct: 227 SPESPTNPS--PPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 31/127 (24%), Positives = 33/127 (25%), Gaps = 6/127 (4%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
           P     P  APAA  A A  P      P    +A    RA P          PPP    P
Sbjct: 444 PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP 503

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPP-----TMPPPPPQGYGGQQMPIRPP 240
            P     AP  P   P G    +   P T             P   P             
Sbjct: 504 -PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562

Query: 241 PPPPNMG 247
           P PP   
Sbjct: 563 PRPPRAS 569

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 18/113 (15%), Positives = 20/113 (17%), Gaps = 1/113 (0%)

Query: 133 QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGG 192
            A PA   A     P P    P   +   A     P            +A  P    P  
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430

Query: 193 AP-PAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
               A           A          P     P   G           P   
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

Length = 700

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 31/118 (26%), Gaps = 12/118 (10%)

Query: 128 EGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRP 187
           + N+   A         P   P     P   A   P   P      L  P  P   GP P
Sbjct: 647 DYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP-VRPTAHHAALRAPQAPRPGGP-P 704

Query: 188 MPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
              GG PP P  P            G+ +   PT PP P                  N
Sbjct: 705 GGGGGLPPPPDLPAAAG----PAPCGSSLIASPTAPPEPEPPGA------EQADGAEN 752

Length = 753

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/97 (25%), Positives = 27/97 (27%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P  A AA  A A P P     P P  +   AP +P         P PPP A       P 
Sbjct: 410 PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
            A    P         A   P      P     P   
Sbjct: 470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 23/127 (18%), Positives = 25/127 (19%), Gaps = 7/127 (5%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
                      A          P       G  A     AP  P     P  P   A   
Sbjct: 638 EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA 697

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPT-------MPPPPPQGYGGQQMPIR 238
              P       PP                    P         +PP P         P +
Sbjct: 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757

Query: 239 PPPPPPN 245
           PPPPP  
Sbjct: 758 PPPPPAP 764

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 15/50 (30%), Positives = 15/50 (30%)

Query: 152 GPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPP 201
            PP        P AP  P     PP PP     P    P  AP  P    
Sbjct: 383 APPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432

Length = 576

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 18/113 (15%), Positives = 23/113 (20%), Gaps = 5/113 (4%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
            QA  A   AVAPP  P    PP            P   +  L                 
Sbjct: 381 AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
             P A       +  +                P   + Y       +   P  
Sbjct: 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY-----RWKATNPVE 488

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 1/112 (0%)

Query: 131  KPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 190
            +P +   A    AP  PP  +   P VS      A PP      P P  P    P+P PP
Sbjct: 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924

Query: 191  GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 242
                P PPPPP          P T            PQ + G  +P R   P
Sbjct: 2925 PPPQPQPPPPPPPR-PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 38/127 (29%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 124  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPP-----PP 178
            S     + P A  A   A+ P   P    PPP  +   AP  PP P   +LP      P 
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

Query: 179  PPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQ-VGRPPTMPPPPPQGYGGQQMPI 237
              +   P    P   P AP  PP         +  T+    PP  P  PPQ       P 
Sbjct: 2860 GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQ-------PQ 2912

Query: 238  RPPPPPP 244
             PPPP P
Sbjct: 2913 APPPPQP 2919

Length = 3151

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 133 QAAPAANGAV---APPPPPP--PQGPPPG--VSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
             +PA +  V   AP P  P   + P P    + G  P   P P +   P   PP+A   
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 186 RPMPPGGAPPAPPPPPGGSGTM 207
            P+PP     AP     G   +
Sbjct: 441 -PLPPSPQASAPRNVASGKPGV 461

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 36/131 (27%), Positives = 40/131 (30%), Gaps = 31/131 (23%)

Query: 132  PQAAPAANGAVAPPPPPPPQGP-----------------PPGVSAGNAPRAPPPPMTGTL 174
            P   P +    APPPPP P  P                 PP  S    P AP  P    L
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 175  PPPPPPMANGPRPMPPGG-APPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQ 233
              P    +     +PP     P  P  P                +P   PPPPPQ     
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAP-------------PPPQPQPQPPPPPQPQPPP 2933

Query: 234  QMPIRPPPPPP 244
              P RP PP  
Sbjct: 2934 PPPPRPQPPLA 2944

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 36/151 (23%), Positives = 40/151 (26%), Gaps = 4/151 (2%)

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGA 141
           AA P E  A   P     +  PK  +  D                     P  APAA  A
Sbjct: 633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692

Query: 142 VAPPPPPPPQ----GPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAP 197
            A   P  P       PP   A +    PP    G   P P      P P  P   P   
Sbjct: 693 PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

Query: 198 PPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
             P       A          PP  PP   +
Sbjct: 753 GAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 124 SKPVEGNKPQAAPAANGA--VAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
           ++P    +P AA AA+ +   +     P         AG  P     P       P  P 
Sbjct: 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDP---PAAVPVNPP 440

Query: 182 ANGPRPMPPGGAPPAPPPPPGGSGTMANFT 211
           +  P+ + P         P     ++   T
Sbjct: 441 STAPQAVRPAQFKEEKKIPVSKVSSLGPST 470

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 20/113 (17%), Gaps = 16/113 (14%)

Query: 134 AAPAANGAVAPPPPPPPQGPPPGVSA--GNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           AA A   A AP    PP    P   +        P P +                     
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWL--VEHAKRLTAQREQLVARAA 106

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
                    P      A         R        P          RP  P  
Sbjct: 107 APAAPEAQAPAAPAERAAAENA--ARRLARAAAAAP----------RPRVPAD 147

Length = 484

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 21/80 (26%), Gaps = 5/80 (6%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
                   A  AA  A AP   P      P   A  AP     P+    P P        
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVR-VAPEPAVA----S 474

Query: 186 RPMPPGGAPPAPPPPPGGSG 205
               P  AP A    P   G
Sbjct: 475 AAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 30/106 (28%), Gaps = 7/106 (6%)

Query: 130 NKPQAAPAANGAVAPPPPPPP---QGPPPGVSAGNAPRAPPPPMTGTLPPP----PPPMA 182
             P  APA        P  PP   Q   PG+S    P  P PP     PP     PPP  
Sbjct: 221 PAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQN 280

Query: 183 NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
                        AP PPP     +          R P       Q
Sbjct: 281 QPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 17/69 (24%)

Query: 134 AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGA 193
            +P   G   P     P  P    + G A  AP            P  A      P   A
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 194 PPAPPPPPG 202
            P P     
Sbjct: 452 APQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 20/74 (27%), Gaps = 6/74 (8%)

Query: 144 PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM---PPGGAPPAPPPP 200
           PP P    G PPG   G      P            P A GP       P  A  A  PP
Sbjct: 391 PPSPGGGGGGPPG---GGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 201 PGGSGTMANFTPGT 214
              +         +
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 29/114 (25%), Positives = 33/114 (28%), Gaps = 1/114 (0%)

Query: 132  PQAAPAANGAVAPPPP-PPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 190
               A A   A +P  P PPP    P          PP    G    P   +   P    P
Sbjct: 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 191  GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
               P AP  PP         +  T+    P   P  P        P   P PPP
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 32/123 (26%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 134  AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGA 193
                A+ + +    P P  P    +A  AP A  PP      P PPP +  P   PP   
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844

Query: 194  PPAPPPPPGGS----GTMANFTPGTQVGRPPTMPPPPPQ--------GYGGQQMPIRPPP 241
            PP P  P GGS    G +    P       P  P  PP             +   + P  
Sbjct: 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ 2904

Query: 242  PPP 244
            P  
Sbjct: 2905 PER 2907

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 24/117 (20%), Positives = 29/117 (24%), Gaps = 2/117 (1%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
             P       A PAA G                 +A  AP    PP    LPP     + 
Sbjct: 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA--SP 509

Query: 184 GPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPP 240
            P       A       P  +    +    T    P   P P         +  RPP
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 21/114 (18%), Positives = 25/114 (21%), Gaps = 4/114 (3%)

Query: 125 KPVEGNKPQAAPAANGAVAPPPPPP---PQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
               G K    P      A P P         P   SA   P AP         PP   +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429

Query: 182 ANG-PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQ 234
                 P+ P    P    P                  P T+ P   +      
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483

Length = 614

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 26/99 (26%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 130 NKPQAAPAANGAVA-----PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 184
            +   A  AN   A     P  P  P GP      GN P + PP  +    PPP     G
Sbjct: 117 AEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVA-VPPPTAFYPG 175

Query: 185 PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMP 223
               PP        P P        FT      + P++P
Sbjct: 176 NGVTPPPQVTYQSVPVPNRIQRKT-FTYNEGK-KGPSLP 212

Length = 475

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 27/113 (23%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 144 PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLP----PPPPPMANGPRPMPPGGAPPAPPP 199
           P     P G P G + G       PP  G  P       P        MP    P  P  
Sbjct: 380 PRMRQLPMGSPMGGAMGQ------PPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR 433

Query: 200 PPGGSGTMANFTPGTQ----VGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 248
           P G +   A   P         +PP  P   P  Y    +    P P     Q
Sbjct: 434 PNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQ 486

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 40/137 (29%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 124  SKPVEGNKPQAAPAANGAVAPPP----------------PPPPQGPPPGVSAGNAPRAPP 167
              P     P  AP A  A  PP                  P P  P    +A  AP A  
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Query: 168  PPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 227
            PP      P PPP +  P   PP   PP P  P GGS       PG  V R P    P  
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS-----VAPGGDVRRRPPSRSPAA 2873

Query: 228  QGYGGQQMPIRPPPPPP 244
            +     + P+R    P 
Sbjct: 2874 KPAAPARPPVRRLARPA 2890

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 28/119 (23%), Positives = 32/119 (26%), Gaps = 4/119 (3%)

Query: 132  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
            P            P PPPP   P        P    PP       P P   + PR     
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 192  GAPPAPPPPPGG---SGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMG 247
            G       PP               T +  PP  PPP P+      +   P PP P   
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPP-PPPTPEPAPHALVSATPLPPGPAAA 2728

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 29/126 (23%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 123 KSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA 182
           +     G     APA   A AP     P    P      A  A   P        P P  
Sbjct: 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGP---RPVAAAAAAAPARAAPAAAPAPAD 493

Query: 183 NGPRP---MPPGGAPPAP-PPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIR 238
           + P P   +PP  A PAP  P    +G +A   P      P                P  
Sbjct: 494 DDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRA 553

Query: 239 PPPPPP 244
                P
Sbjct: 554 AAATEP 559

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 27/115 (23%), Positives = 31/115 (26%), Gaps = 10/115 (8%)

Query: 134 AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRA----PPPPMTGTLPPPPPPMANGPRPMP 189
           A     GA A     PP GPPPG             P   ++   P  P    +   P P
Sbjct: 52  AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGP 111

Query: 190 PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
               PP P PPP          P         + P    G      P      P 
Sbjct: 112 SSPDPPPPTPPPASPP------PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA 160

Length = 1352

>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 18/89 (20%), Positives = 23/89 (25%), Gaps = 8/89 (8%)

Query: 133 QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP-- 190
           Q               P   P     A         P     P P  P    PRP+ P  
Sbjct: 899 QGKAEWRLRFTRRDWDPVGLPVE---AAQTDTLEALPDWLRAPAPAEPAL--PRPLAPSG 953

Query: 191 -GGAPPAPPPPPGGSGTMANFTPGTQVGR 218
            GGA  +  P      ++    P   + R
Sbjct: 954 LGGAIDSALPGEAVRSSLGTQAPAFALLR 982

AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species [DNA metabolism, DNA replication, recombination, and repair]. Length = 1135

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 13/76 (17%), Positives = 16/76 (21%)

Query: 125 KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 184
           + ++   P       G       P          A  A  A   P       P    A  
Sbjct: 385 RRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA 444

Query: 185 PRPMPPGGAPPAPPPP 200
             P P     PA    
Sbjct: 445 APPAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 24/72 (33%)

Query: 130 NKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP 189
           N  +  P    +  PP P PP   P   +    P  PPP  T      P  +     P P
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPP 578

Query: 190 PGGAPPAPPPPP 201
           P    P P P  
Sbjct: 579 PIPEEPTPSPTK 590

Length = 620

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 23/101 (22%), Positives = 25/101 (24%), Gaps = 1/101 (0%)

Query: 145 PPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG-PRPMPPGGAPPAPPPPPGG 203
              P P     G + G     P P         P  +A G P       A    P  P  
Sbjct: 641 TALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRP 700

Query: 204 SGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
            G              P    P P G      P  PP P P
Sbjct: 701 GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEP 741

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 38/131 (29%), Positives = 42/131 (32%), Gaps = 18/131 (13%)

Query: 126  PVEGNKPQAAPAANGAVAPPPPPPPQGP--------PPGVSAGNAPRAPPPPMTGTLPPP 177
            P      QA+PA     AP PP  P GP        P        P AP PP      PP
Sbjct: 2723 PGPAAARQASPAL--PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780

Query: 178  P----PPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQ 233
                 P +A+         +P  P  PP      A   P       P  PP   Q     
Sbjct: 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ----P 2836

Query: 234  QMPIRPPPPPP 244
              P  PP PPP
Sbjct: 2837 TAPPPPPGPPP 2847

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 125 KPVEGNKPQAAPAANGAVAPP---PPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
            P    +P+AA AAN     P      PP  PP  V+    P    P        P    
Sbjct: 382 TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA---PPVPHTPE-----SAPKLTR 433

Query: 182 ANGPRPMPPGGAPPAPPP 199
           A  P    P   PPAPP 
Sbjct: 434 AAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 119 QLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP 178
           +L  +S+   G+    A         PPPP P  P P  +A   P  PPPP     P   
Sbjct: 507 KLNLESQ--SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP----PTAT 560

Query: 179 PPMANGPRPMPPGGAPPAPPPPP 201
              +N P  +P   +PP P P  
Sbjct: 561 QASSNAPAQIPADSSPPPPIPEE 583

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 27/110 (24%), Positives = 31/110 (28%)

Query: 135  APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAP 194
              AA  +  P  P      P   S  +    PPPP T    P     A    P P     
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 195  PAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
             +P  P   +       P T  G      PP   G      P  P   PP
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 20/76 (26%), Positives = 25/76 (32%)

Query: 133 QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGG 192
             +PAA+  V  PP P     P G  A   P   P P       PPP   +    M    
Sbjct: 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789

Query: 193 APPAPPPPPGGSGTMA 208
           AP         +  +A
Sbjct: 790 APSMDDEDRRDAEEVA 805

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 36/135 (26%), Positives = 43/135 (31%), Gaps = 22/135 (16%)

Query: 132  PQAAPAANGAVAPPPPPPPQGPPPGVSA-------------GNAPRAPPPPMTGTLPPPP 178
            P A PAA     PPP P P+   P V++               AP        G  PP P
Sbjct: 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSP 2616

Query: 179  -PPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPP--------PPQG 229
             PP  + P P PP  +P A  P P    T+           P  +  P          Q 
Sbjct: 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQA 2676

Query: 230  YGGQQMPIRPPPPPP 244
                Q P R    P 
Sbjct: 2677 SSPPQRPRRRAARPT 2691

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 32/130 (24%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 126  PVEGNKPQAAPAANGAVAPPPPP-PPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 184
            P    +P   P   G  AP PP  P  GPP         R     ++ +    P P    
Sbjct: 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPR-----RLTRPAVASLSESRESLPSPWDPA 2805

Query: 185  PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPP----------PQGYGGQQ 234
              P        A PP    +G +   T       PP   PPP          P G   ++
Sbjct: 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRR 2865

Query: 235  MPIRPPPPPP 244
             P R P   P
Sbjct: 2866 PPSRSPAAKP 2875

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 21/65 (32%), Positives = 22/65 (33%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P A   A  A APP    P  PP   +A  A  AP  P        P   A      P  
Sbjct: 62  PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLR 121

Query: 192 GAPPA 196
           GA  A
Sbjct: 122 GAAAA 126

Length = 1228

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 21/81 (25%), Positives = 21/81 (25%), Gaps = 26/81 (32%)

Query: 164 RAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMP 223
            AP PP      P P      P   PP  APP PP  P                  P   
Sbjct: 380 GAPAPPSAAWGAPTPAA----PAAPPPAAAPPVPPAAPAR-----------PAAARPAPA 424

Query: 224 PPPPQGYGGQQMPIRPPPPPP 244
           P PP               PP
Sbjct: 425 PAPP-----------AAAAPP 434

Length = 576

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 11/77 (14%), Positives = 17/77 (22%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
           +  V   +  A P    +     P  P             +              P  A+
Sbjct: 388 TAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS 447

Query: 184 GPRPMPPGGAPPAPPPP 200
             RP+       A   P
Sbjct: 448 RARPVNSALERLASVRP 464

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 16/103 (15%), Positives = 21/103 (20%), Gaps = 1/103 (0%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
                      A     AP  PPPP   P    A   P      +           A   
Sbjct: 379 ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
           +   P  A     P       +A+  P               +
Sbjct: 439 KKSEP-AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/87 (25%), Positives = 23/87 (26%), Gaps = 9/87 (10%)

Query: 141 AVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPP 200
           A  P P  PPQ   P  SA                PP  P      P PP  AP   P  
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAV-----APPQAPAV----PPPPASAPQQAPAV 413

Query: 201 PGGSGTMANFTPGTQVGRPPTMPPPPP 227
           P    T        Q+ R         
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKK 440

Length = 647

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 20/98 (20%), Positives = 23/98 (23%), Gaps = 4/98 (4%)

Query: 135 APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP----PPMANGPRPMPP 190
           AP A  A A   PPP   P            P P +              +A    P  P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 191 GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
               PA P     +   A          P    P    
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 25/116 (21%), Positives = 30/116 (25%), Gaps = 2/116 (1%)

Query: 131 KPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 190
            P +         P P  P   PP    A   P  P P ++  L P   P        P 
Sbjct: 96  APASPAREGSPTPPGPSSPDPPPPTPPPASPPPS-PAPDLSEMLRPVGSPGPPPAASPPA 154

Query: 191 GGAPPAPPP-PPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
            GA PA        S   A      +        PP             P PP  +
Sbjct: 155 AGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS 210

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/71 (32%), Positives = 27/71 (38%)

Query: 158 SAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVG 217
           SA N  + PPPP     PP P P    P    P   PP PPP    + + A         
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 218 RPPTMPPPPPQ 228
            PP +P  P  
Sbjct: 576 PPPPIPEEPTP 586

Length = 620

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 4/77 (5%)

Query: 129 GNKPQAAPAANGAVAPPPPPPPQGP----PPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 184
           G  P    AA    AP P    Q          S  +AP A        LP   P     
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 185 PRPMPPGGAPPAPPPPP 201
           P P P   A   P   P
Sbjct: 403 PAPEPARSAEAPPLVAP 419

Length = 504

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 34/115 (29%), Positives = 35/115 (30%), Gaps = 4/115 (3%)

Query: 132 PQAAPAA--NGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP 189
            Q AP        AP P  PP  PP       A      P         PP A   R  P
Sbjct: 687 IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP 746

Query: 190 PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
           P  AP    PP    G      P    G P   PPP       Q+    P P PP
Sbjct: 747 PAAAPGRARPPAAAPGRAR--PPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPP 799

Length = 991

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 151 QGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSG 205
                 V+A     APP P       P P     P P     A PA  P PG  G
Sbjct: 45  DEDLGAVAASAQAYAPPAP------APLPAALVAPAPAAASIAAPAAVPAPGAIG 93

Length = 767

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 23/87 (26%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
           P    +PQ    +     PPP PP Q   P          PPP    T  P  P   N P
Sbjct: 240 PPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA----QPPPQNQPTPHPGLPQGQNAP 295

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFTP 212
            P P           P G      F  
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 19/107 (17%), Positives = 23/107 (21%), Gaps = 13/107 (12%)

Query: 143 APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPG 202
           A     P Q   P  +    P A P P       P P  +          A     P   
Sbjct: 369 ASGGRGPKQHIKPVFTQ---PAAAPQPSAAAAASPSPSQS--------SAAAQPSAPQSA 417

Query: 203 GSGTMANFTPGTQVGRPPTMPPP--PPQGYGGQQMPIRPPPPPPNMG 247
                   T          + PP   PQ     Q       P   + 
Sbjct: 418 TQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/103 (17%), Positives = 23/103 (22%), Gaps = 11/103 (10%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGN-----------APRAPPPPMTGTLPPPPPP 180
                AA  AV+ P  P  +  P  V                  AP  P       P   
Sbjct: 63  QPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAER 122

Query: 181 MANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMP 223
            A          A  A P P   +   A      +      + 
Sbjct: 123 AAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVN 165

Length = 484

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 14/72 (19%)

Query: 134 AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGA 193
           A  AA  A A P P          S  + P A         P PPP          P   
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAA-----PAPPPN---------PPAT 311

Query: 194 PPAPPPPPGGSG 205
           PP PP   G   
Sbjct: 312 PPEPPARRGRGS 323

Length = 656

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
           P     P +      A   P PPP   P        AP A P P     P PP   A   
Sbjct: 435 PAPAPAPPSPAGNAPAGGAPSPPPAAAPSA--QPAPAPAAAPEPTAAPAPAPPAAPAPAA 492

Query: 186 RPMPPGGAPPAPPPPPGGSGTMA 208
            P     A PA P  P G+   A
Sbjct: 493 AP-----AAPAAPAAPAGADDAA 510

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 18/73 (24%), Positives = 18/73 (24%), Gaps = 5/73 (6%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
             P         PAA  A  P   PP     P   A   P   P P     P    P A 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAP-----PAAAAPPAR 436

Query: 184 GPRPMPPGGAPPA 196
              P     A   
Sbjct: 437 SADPAAAASAGDR 449

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 16/68 (23%), Positives = 17/68 (25%)

Query: 177 PPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMP 236
           PP P   G  P   GGAP AP          A    G        +P             
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 237 IRPPPPPP 244
             P P   
Sbjct: 451 AAPQPAVR 458

Length = 598

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 4/77 (5%)

Query: 151 QGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANF 210
            G     +    P    PP     PP P P A  P P PP   P A              
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA----PAQ 569

Query: 211 TPGTQVGRPPTMPPPPP 227
            P      PP    P P
Sbjct: 570 IPADSSPPPPIPEEPTP 586

Length = 620

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 15/40 (37%)

Query: 188 MPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 227
           +PPG  PP PPPPPG                PP+ PPPPP
Sbjct: 4   LPPGNPPP-PPPPPG--------------FEPPSQPPPPP 28

Length = 2365

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 21/92 (22%), Positives = 25/92 (27%), Gaps = 14/92 (15%)

Query: 145 PPPPPPQGPPPGV------SAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPP 198
           PP PP + P PG+      S G+  R  P P        P        P       P   
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 199 PPPGGSGTMANFTPGTQVGRPPTMPPPPPQGY 230
           P                   P   PP   QG+
Sbjct: 233 PVQP--------AQQPTPQNPAQQPPQTEQGH 256

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 23/126 (18%), Positives = 29/126 (23%), Gaps = 6/126 (4%)

Query: 125 KPVEGNKPQAAPAANGAVAPPPP---PPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 181
                  P+AA AA    A  PP    PP     G  A +     P              
Sbjct: 405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

Query: 182 ANGPRPMP---PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIR 238
               +P        AP +  PP             +            P     +  P  
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524

Query: 239 PPPPPP 244
             PP P
Sbjct: 525 AAPPAP 530

Length = 830

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	100.0
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	100.0
PF09732	125	CactinC_cactus: Cactus-binding C-terminus of cacti	99.76
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.84
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.61
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.7
KOG2370	623	consensus Cactin [Signal transduction mechanisms]	97.43
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	94.85
PF06346	160	Drf_FH1: Formin Homology Region 1; InterPro: IPR00	82.32

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=8.5e-53  Score=368.32  Aligned_cols=120  Identities=62%  Similarity=1.007  Sum_probs=116.0

Q ss_pred             CcchhhhhhhhhcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEecCCccc
Q 025743           10 SEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEII   89 (248)
Q Consensus        10 s~~~v~~rk~vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYEtI   89 (248)
                      ++..+++|++||||||||||||+||++.+|.||||||+|++|+++++|+|||||+|||+||++|++||||||||||||||
T Consensus       100 ~k~~v~vk~~vkigrpgykvtk~r~~~~gq~~L~fQv~Yp~i~~~~~Pr~rfmssyeq~ve~~dk~~qyLvfaaePyE~I  179 (222)
T KOG0227|consen  100 QKIIVEVKKFVKIGRPGYKVTKQRDPENGQQGLLFQVNYPEIEEGIMPRHRFMSSYEQKVEPPDKSWQYLVFAAEPYENI  179 (222)
T ss_pred             ccchhhhhhhhhcCCCcceeeeeecCccCceeeEEEecchhhhhccCCcchhhhhhHhhcCCccccceEEEEEeccccce
Confidence            56688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCcccccCCCcceeeecCCCCeEEEEEeeecCCCCC
Q 025743           90 AFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG  129 (248)
Q Consensus        90 aFKIPn~EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~ea  129 (248)
                      ||||||+|||+++||||||||.|||+|+|||||+..+.+.
T Consensus       180 afk~p~~Eid~se~Kf~t~wd~~tk~y~lqF~fk~~~~~~  219 (222)
T KOG0227|consen  180 AFKVPSREIDKSEGKFWTHWDAETKQYTLQFFFKQAEPEQ  219 (222)
T ss_pred             eeecCchhhhhccCceeeeecCCCceEEEEEEecccCccC
Confidence            9999999999999999999999999999999999877654

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=2.2e-37  Score=270.46  Aligned_cols=116  Identities=35%  Similarity=0.644  Sum_probs=105.9

Q ss_pred             Ccchhhhhhhh-hcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEecCCcc
Q 025743           10 SEKSTFVKQAI-KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEI   88 (248)
Q Consensus        10 s~~~v~~rk~v-KIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYEt   88 (248)
                      +++-+++|+.+ ++|+|+|||.++++++.+..||.|||+|++++...+|++||||+|||++|..|++|||||||||||||
T Consensus       105 qQkiieaKqSlk~~GiP~ykv~~~~epk~G~~Gl~iqvnY~Dd~a~~~P~yRivs~lEq~ve~~d~~f~yLV~a~ePyEn  184 (222)
T COG5246         105 QQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSSLEQNVEEYDESFRYLVFACEPYEN  184 (222)
T ss_pred             HHHHHHHHHHHHhcCCCceeEEEeecCCCCceeeEEEEeccchhhccCcceehhhhhhhcchhhcccceEEEEEeccccc
Confidence            34456666555 77899999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             ceeeecCcccccCCCcceeeecCCCCeEEEEEeeecCCC
Q 025743           89 IAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPV  127 (248)
Q Consensus        89 IaFKIPn~EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~  127 (248)
                      |||||++.|||..  +.|++||.+|++|+|||||+.-+.
T Consensus       185 Iafk~~~~ei~f~--s~~~~wDa~~~tYt~qFff~~a~~  221 (222)
T COG5246         185 IAFKFENKEIDFL--SIYEDWDAETGTYTLQFFFLEAGP  221 (222)
T ss_pred             eeeecCCCccchh--hhcccccccCceEEEEEeeecccC
Confidence            9999999999976  477899999999999999987543

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex

Probab=99.76  E-value=1.6e-18  Score=143.27  Aligned_cols=84  Identities=31%  Similarity=0.450  Sum_probs=73.1

Q ss_pred             ccccccceEEEeeccCccC-CCCCceeeecccccccCCCCCCccEEEEE-ecCCccceeeecCcccccCCC-cceeeecC
Q 025743           35 PETKQRSLLFQIEYPEIED-LSKPRHRFMSSFEQRVQPFDKRYQYLMFA-AEPYEIIAFKVPSTEIDKSTP-KFFSHWDP  111 (248)
Q Consensus        35 peT~q~gLlfqV~YPei~~-g~~Pr~RfMSayEQkvE~pdk~~QYLl~A-aEPYEtIaFKIPn~EIDk~~~-k~wt~WD~  111 (248)
                      |-...+|++|+|.||++.+ +..|+||||+     + ..++++++|+|+ ++|||+|||||.|+|+|.+.+ .|+++||.
T Consensus        36 PPK~vqGYkFnIfYPdL~d~~~~P~y~i~~-----~-~~~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~  109 (125)
T PF09732_consen   36 PPKIVQGYKFNIFYPDLIDKSKTPRYRIEP-----D-EDNPDFCILRFHAGPPYEDIAFKIVNREWDYSHKRGFRCSFDR  109 (125)
T ss_pred             CCceeeeeEEEEECCcccCCCCCCcEEEEE-----C-CCCCCEEEEEEeCCCCCcCEEEEEecCeeecCCCCCceEEeeC
Confidence            4455789999999999965 6789999999     2 238999999995 699999999999999999987 78999986


Q ss_pred             CCCeEEEEEeeecCC
Q 025743          112 DSKMFTLQLYFKSKP  126 (248)
Q Consensus       112 dtK~F~LQf~Fk~e~  126 (248)
                        ++|.|+|+||..+
T Consensus       110 --gilqL~F~FKr~~  122 (125)
T PF09732_consen  110 --GILQLYFNFKRYR  122 (125)
T ss_pred             --CEEEEEEEEEhhh
Confidence              6999999999754

The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=1.3e-08  Score=104.70  Aligned_cols=36  Identities=44%  Similarity=0.898  Sum_probs=19.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025743          182 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTM  222 (248)
Q Consensus       182 ~~~p~p~~~~g~p~~ppppp~~~~~~~~f~~~~~~~~~~~~  222 (248)
                      |++|+|++++|+.++|||||.+     +|-+|.+||++++|
T Consensus       568 G~PPpPppppg~~gppPPPpp~-----g~~Gg~ppPP~~gm  603 (1102)
T KOG1924|consen  568 GGPPPPPPPPGGGGPPPPPPPG-----GFLGGPPPPPPPGM  603 (1102)
T ss_pred             CCCCccCCCCCCCCCCCcCCCC-----CCCCCCCCCCCCCc
Confidence            3445555555555555554444     45567666666554

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.61  E-value=1.6e-07  Score=96.80  Aligned_cols=13  Identities=77%  Similarity=1.901  Sum_probs=6.8

Q ss_pred             CCCCCCCCCCCCC
Q 025743          191 GGAPPAPPPPPGG  203 (248)
Q Consensus       191 ~g~p~~ppppp~~  203 (248)
                      .|+||+|||++|+
T Consensus       567 aG~PPpPppppg~  579 (1102)
T KOG1924|consen  567 AGGPPPPPPPPGG  579 (1102)
T ss_pred             cCCCCccCCCCCC
Confidence            3555555555554

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.70  E-value=0.00057  Score=68.27  Aligned_cols=43  Identities=28%  Similarity=0.488  Sum_probs=33.4

Q ss_pred             ecCCCCeEEEEEeeec-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025743          109 WDPDSKMFTLQLYFKS-KPVEGNKPQAAPAANGAVAPPPPPPPQ  151 (248)
Q Consensus       109 WD~dtK~F~LQf~Fk~-e~~ea~k~~~~~~~~~~~~pppp~pp~  151 (248)
                      -|+||+.|.+-|.-|. .+.+++++.++.-++....|+||++|+
T Consensus       284 ~~~~t~~fi~~fi~k~~~~~~Sv~~~~~~lp~q~~~P~PPP~Ps  327 (569)
T KOG3671|consen  284 TERDTMKFIYDFIQKNPNGLPSVGQSAAELPRQKKRPPPPPPPS  327 (569)
T ss_pred             cchhhccccccchhcCCCCCcccccchhhcccccCCCCCcCCcc
Confidence            4889999999999998 899999997666666666665555443

>KOG2370 consensus Cactin [Signal transduction mechanisms]

Probab=97.43  E-value=9e-05  Score=73.75  Aligned_cols=78  Identities=26%  Similarity=0.371  Sum_probs=58.4

Q ss_pred             ccceEEEeeccCc-cCCCCCceeeecccccccCCCCCCccE-EEEEecCCccceeeecCcccccCC--CcceeeecCCCC
Q 025743           39 QRSLLFQIEYPEI-EDLSKPRHRFMSSFEQRVQPFDKRYQY-LMFAAEPYEIIAFKVPSTEIDKST--PKFFSHWDPDSK  114 (248)
Q Consensus        39 q~gLlfqV~YPei-~~g~~Pr~RfMSayEQkvE~pdk~~QY-Ll~AaEPYEtIaFKIPn~EIDk~~--~k~wt~WD~dtK  114 (248)
                      .+|.-|.|-||+. +.+..|.|||-++-..      .++-- -..|.+|||.|||||=|+|-+.+.  |..|+|   ++.
T Consensus       538 VQGYkFNIFYPDLidk~~aP~y~ie~~~d~------~d~ciIRF~aGpPYeDIAFkIVnkeWeyshKrGfKcqF---~ng  608 (623)
T KOG2370|consen  538 VQGYKFNIFYPDLIDKGRAPTYRIERCRDK------NDFCIIRFHAGPPYEDIAFKIVNKEWEYSHKRGFKCQF---DNG  608 (623)
T ss_pred             hcceeecccchhhhccccCCeeeeeecCCC------CceEEEEeccCCcchhhhhhhhcchhhhhhhcCcccee---eCC
Confidence            4799999999987 5568999988665432      13332 345899999999999999887644  444554   568


Q ss_pred             eEEEEEeeecC
Q 025743          115 MFTLQLYFKSK  125 (248)
Q Consensus       115 ~F~LQf~Fk~e  125 (248)
                      +|.|-|+||.-
T Consensus       609 vlqL~F~FKk~  619 (623)
T KOG2370|consen  609 VLQLWFRFKKY  619 (623)
T ss_pred             eeeeeehhhhh
Confidence            89999999864

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=94.85  E-value=0.62  Score=49.34  Aligned_cols=15  Identities=13%  Similarity=0.406  Sum_probs=12.1

Q ss_pred             cceeeecCCCCeEEE
Q 025743          104 KFFSHWDPDSKMFTL  118 (248)
Q Consensus       104 k~wt~WD~dtK~F~L  118 (248)
                      .|++|||.++.+-|+
T Consensus       500 e~k~~wD~~lGVt~I  514 (894)
T KOG0132|consen  500 EYKDYWDVELGVTYI  514 (894)
T ss_pred             hhhhhhhcccCeeEe
Confidence            588899998887764

>PF06346 Drf_FH1: Formin Homology Region 1; InterPro: IPR009408 This domain is found in some of the Diaphanous related formins (Drfs) []

Probab=82.32  E-value=10  Score=33.23  Aligned_cols=11  Identities=73%  Similarity=1.721  Sum_probs=4.8

Q ss_pred             CCCCCCCCCCC
Q 025743          221 TMPPPPPQGYG  231 (248)
Q Consensus       221 ~~~~~p~~g~~  231 (248)
                      ++.++++-||+
T Consensus       142 g~ppP~p~g~g  152 (160)
T PF06346_consen  142 GMPPPPPFGFG  152 (160)
T ss_pred             CCCCCCccccC
Confidence            33444444544

It consists of low complexity repeats of around 12 residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	5e-50
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-04
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-04

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231

 Score =  162 bits (412), Expect = 5e-50
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 20/120 (16%)

Query: 23  GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFA 82
           G  G  +   +  E K+ S+       + +    P  R +S  E       K  ++L+ A
Sbjct: 114 GSVGMAIQVNYSSEVKENSVD-----SDDKAKVPPLIRIVSGLELSDTK-QKGKKFLVIA 167

Query: 83  AEPYEIIAFKVPSTEIDKSTPKF--------------FSHWDPDSKMFTLQLYFKSKPVE 128
            EP+E IA ++P  EI  S                   + WD  SK++ +Q +FK    E
Sbjct: 168 YEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQE 227

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 19/121 (15%), Positives = 26/121 (21%), Gaps = 1/121 (0%)

Query: 129 GNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 188
            +K +  P A         P  Q          A         G  P    P     + +
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62

Query: 189 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPT-MPPPPPQGYGGQQMPIRPPPPPPNMG 247
            P             +           +  P   M P  P   G      + P   P  G
Sbjct: 63  TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Query: 248 Q 248
           Q
Sbjct: 123 Q 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.5 bits (156), Expect = 5e-12
 Identities = 19/113 (16%), Positives = 25/113 (22%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           P   PAA G        PPQG  P +            +   +      M +      P 
Sbjct: 31  PPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPL 90

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
             P A   P              Q    P    P        +   +  P   
Sbjct: 91  VDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 15/117 (12%), Positives = 20/117 (17%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
                    A     P     P    +AG +      P  G +P         P      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 248
                                       P +P         QQ P+  P        
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 18/123 (14%), Positives = 23/123 (18%)

Query: 126 PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 185
           P                A P     Q   P     +            +     P+ +  
Sbjct: 35  PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94

Query: 186 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 245
             M P        P       MA    G           P  Q Y    +   PPP    
Sbjct: 95  AYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDL 154

Query: 246 MGQ 248
              
Sbjct: 155 TLP 157

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 19/113 (16%), Positives = 24/113 (21%), Gaps = 3/113 (2%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
           PQ A  + G      P   Q       A  +            P   P     P+     
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV---PLVDPNAYMQPQVPVQM 105

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
           G P      P  +      +        P     P         PI     PP
Sbjct: 106 GTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP 158

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 10/89 (11%), Positives = 16/89 (17%)

Query: 160 GNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRP 219
            +  +   P           P+    + MPP     A               P     + 
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 220 PTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 248
            T           Q           N+  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPL 90

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 6e-07
 Identities = 15/115 (13%), Positives = 22/115 (19%), Gaps = 2/115 (1%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
                                    ++  +    P       + P  P       P+   
Sbjct: 55  SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGT--PLQQQ 112

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNM 246
             P A P     S  M           P  +    P       +P  P   PP  
Sbjct: 113 QQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPER 167

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 16/98 (16%), Positives = 20/98 (20%), Gaps = 1/98 (1%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPR-PMPP 190
            Q   A            P   P        P     P+     P   P    P   M  
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 191 GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
              P     P      +        +  PP + PP   
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 19/113 (16%), Positives = 22/113 (19%), Gaps = 3/113 (2%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
            Q    A   +                       P   M    P  P  M    +     
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ---PQVPVQMGTPLQQQQQP 115

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
            A PA   P    G               T  PPP         P+  PP   
Sbjct: 116 MAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 14/110 (12%), Positives = 20/110 (18%)

Query: 132 PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
            Q         A             +   NA   P  P+    P                
Sbjct: 65  AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124

Query: 192 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 241
            A       P       +              PPPP     ++M +    
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 6/68 (8%), Positives = 12/68 (17%)

Query: 181 MANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPP 240
           M++  + + P                     P        +         G      +  
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 241 PPPPNMGQ 248
              P   Q
Sbjct: 61  FLTPAQEQ 68

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 13/82 (15%), Positives = 20/82 (24%), Gaps = 3/82 (3%)

Query: 170 MTGTLPPPPPPMANGPRPMPPGGAPPA---PPPPPGGSGTMANFTPGTQVGRPPTMPPPP 226
           M+       P               PA   PP  P  +G           G  P+M    
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 227 PQGYGGQQMPIRPPPPPPNMGQ 248
                 +Q+  +      +M  
Sbjct: 61  FLTPAQEQLHQQIDQATTSMND 82

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 54.8 bits (131), Expect = 6e-09
 Identities = 23/117 (19%), Positives = 28/117 (23%), Gaps = 3/117 (2%)

Query: 133 QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP-PPMANGPRPMPPG 191
               +           P        S   A   PP  +    PPPP  P A  P     G
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67

Query: 192 GAPPAP-PPPPGGSGTMA-NFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNM 246
            +        P G GT +            P  P   P   G     +   P P   
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 20/108 (18%), Positives = 24/108 (22%), Gaps = 8/108 (7%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
             P       A+        P   P P  PPP   A   P       +        P   
Sbjct: 22  VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP 81

Query: 184 G--------PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMP 223
           G             PG   PA  PP  G      +        P  + 
Sbjct: 82  GTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 19/92 (20%), Positives = 21/92 (22%), Gaps = 4/92 (4%)

Query: 142 VAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG-GAPPAPPPP 200
            AP  P  P       +A   P  P PP  G  P   P      +P  P    P      
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 201 PGGSGTMANFTPGTQVGRPPTMPP---PPPQG 229
                                      PPP G
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 18/79 (22%), Gaps = 2/79 (2%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
           + P     P  A A   A   P  P P  P  G +    P+           PP P   N
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAP--PALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 184 GPRPMPPGGAPPAPPPPPG 202
                              
Sbjct: 61  ATVAAGHATLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 20/107 (18%), Positives = 25/107 (23%), Gaps = 2/107 (1%)

Query: 124 SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 183
           + P       A  AANG  A P PP     P G       + P  P           +A 
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 184 GPRPMPPG--GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 228
           G   +                            Q  +P   P  P  
Sbjct: 66  GHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG 112

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 2/96 (2%)

Query: 150 PQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGT--M 207
           P G    +     P  PP   +    P     +          A PA P P    G    
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 208 ANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 243
           ++ +   +            Q  GG     R     
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 24/133 (18%), Positives = 41/133 (30%)

Query: 107 SHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAP 166
            H D D KMF+ Q+        G    AAP+ + ++ P    P Q   P  +  +     
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 167 PPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPP 226
            PP +    P  P   + P     G +  +P      +   ++      +G    +  P 
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 227 PQGYGGQQMPIRP 239
                        
Sbjct: 127 HPSGNMASFTKHI 139

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 143 APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPP 199
               PP    PPP    G  P+  PP        PP      P+  PP GAPPA PP
Sbjct: 385 QAAYPPQGYAPPPQ---GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 27/119 (22%), Positives = 36/119 (30%), Gaps = 23/119 (19%)

Query: 123 KSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA 182
           +++  +  + +     +   AP            +      +    P  G  PPP     
Sbjct: 343 ETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY-- 400

Query: 183 NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 241
                 PP G PP   PP                G PP   PPPPQG   Q  P   PP
Sbjct: 401 ------PPQGYPPQGYPPQ---------------GYPPQGYPPPPQGAPPQGAPPAAPP 438

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 14/58 (24%), Gaps = 11/58 (18%)

Query: 175 PPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGG 232
               P +   P+ M   G   A PP                 G        P  G+G 
Sbjct: 576 TETQPIVYGQPQLMLTAGPSVAVPPQAPFGY-----------GYTAPAYGQPQPGFGY 622

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 28/148 (18%)

Query: 1   MLLLSPSPTSEKSTFVKQAIKIGRPGYR-VTKQFDPETKQRSLLFQIEYPEIEDLSKPRH 59
            LL       +K  FV++ +   R  Y+ +      E +Q S++ ++   + + L     
Sbjct: 70  TLLSKQEEMVQK--FVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 60  RFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAF-------K---VPSTEIDKSTPKFFS-- 107
            F      R+QP+ K  Q L+    P + +         K        +           
Sbjct: 125 VFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 108 -HW-------DPDSKMFTLQ-LYFKSKP 126
             W        P++ +  LQ L ++  P
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDP 211

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 28/116 (24%), Gaps = 3/116 (2%)

Query: 132  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 191
                       +P           G              +        P + G     PG
Sbjct: 1482 ADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPG 1541

Query: 192  GAPPAP---PPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 244
             +P +P   P  P  S T  +++P +    P +    P         P   P  P 
Sbjct: 1542 FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1597

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 13/109 (11%), Positives = 21/109 (19%)

Query: 119 QLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP 178
            LYF+ +     +   A     +                      +        T     
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETA 75

Query: 179 PPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 227
            P +N         A  A  P    S  +A         +        P
Sbjct: 76  SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	100.0

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-50  Score=355.46  Aligned_cols=106  Identities=25%  Similarity=0.368  Sum_probs=96.9

Q ss_pred             hhhhcCCCCeeEEeeeCccccccceEEEeeccC-c---------cCCCCCceeeecccccccCCCCCCccEEEEEecCCc
Q 025743           18 QAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPE-I---------EDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYE   87 (248)
Q Consensus        18 k~vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPe-i---------~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYE   87 (248)
                      ....|||||||||||||+||+|+||||||+|++ |         +++++|||||||+|||++|.+ ++||||||||||||
T Consensus        94 ~~~~IGRPGYKVTKVRDPETgQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~P-Kd~QYLVIAAEPYE  172 (231)
T 4dgw_C           94 XXXXXXXXXXXXXXXXXXXXGSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQ-KGKKFLVIAYEPFE  172 (231)
T ss_dssp             HSCCCCCCCCBCCCEECCBCCBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCC-CCCEEEEEECSSSC
T ss_pred             cccccccccccccccccccCCCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCC-CCCEEEEEEeCCCC
Confidence            345799999999999999999999999999999 6         778999999999999999988 99999999999999


Q ss_pred             cceeeecCcccccCC--------------CcceeeecCCCCeEEEEEeeec
Q 025743           88 IIAFKVPSTEIDKST--------------PKFFSHWDPDSKMFTLQLYFKS  124 (248)
Q Consensus        88 tIaFKIPn~EIDk~~--------------~k~wt~WD~dtK~F~LQf~Fk~  124 (248)
                      ||||||||+|||+.+              |+||||||+|+|+|+||||||.
T Consensus       173 TIAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~  223 (231)
T 4dgw_C          173 NIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ  223 (231)
T ss_dssp             CBCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred             CceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence            999999999999988              8899999999999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00