Citrus Sinensis ID: 025746

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHLLQRPFLANHL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHcHHHccccEEEEEEcHHHHHHHHcccccccEEccEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEEEEEccccHcccccccccccccccc
Coil and Loop (DISEMBL)
masisqtnqfpcktlsqnpphnqftskpsilplnsvRISRSLAKKSFLSiqgftrarplvltraadddewgpekekeeggalavaeeespkevtEIDNLKKALVDsfygtdrglnatSETRAEIVELITQLeaknptpaptEALTLLNAKWILVYTSFsglfpllsrgtlplarVEEISQTidsenftvqnsirfagplattsistnakfevrspkrvqikfeegiigtpqsktqlhllqrpflanhl
Flexible Loop (DISEMBL)
masisqtnqfpcktlsqnpphNQFTSKPSILPLNSVRISRSLAKKsflsiqgftrarplvltraadddewgpekekeeggalavaeeespkevteIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQleaknptpAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQtidsenftvqNSIRFAgplattsistnakfevrspKRVQIKFEegiigtpqsktqlhllqrpflanhl
Low Complexity Region (SEG)
MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAdddewgpekekeeggalavaeeeSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHLLQRPFLANHL
Disordered region (IsUnstruct)
*************************************I**SLAKKSFLSIQGFTRARPLVLT***********************************NLKKALVDSFYGTDRGLNATSETRAEIVELITQLEA******PTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVR**KRVQIKFEEGIIG********************
Disordered Region (DISOPRED)
*****************************************************************************************************ALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHLLQRPFLA***
Disordered Region (DISEMBL)
*********FPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAD****************************EIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHLLQRPFLANHL
Disordered Region (DISPRO)
********************************************************************************************VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHLLQRPFLA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHLLQRPFLANHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.959	0.736	0.966	1e-130
Q96398	322	Chromoplast-specific caro	N/A	no	0.903	0.695	0.666	1e-78
O99019	326	Light-induced protein, ch	N/A	no	0.931	0.708	0.683	1e-77
P80471	326	Light-induced protein, ch	N/A	no	0.931	0.708	0.683	3e-77
Q94KU6	319	Plastid lipid-associated	N/A	no	0.903	0.702	0.602	2e-69
O81439	318	Probable plastid-lipid-as	yes	no	0.891	0.694	0.576	2e-66
O49629	310	Probable plastid-lipid-as	no	no	0.875	0.7	0.577	2e-66
Q94FZ9	327	Plastid lipid-associated	N/A	no	0.866	0.657	0.559	2e-58
Q6K439	319	Probable plastid-lipid-as	yes	no	0.818	0.636	0.616	2e-58
O82291	376	Probable plastid-lipid-as	no	no	0.665	0.438	0.446	4e-36

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/238 (96%), Positives = 232/238 (97%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV
Sbjct: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60

Query: 61  LTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120
           LTRAADDDEWGPEKEKE GGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET
Sbjct: 61  LTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120

Query: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQ 180
           RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQ
Sbjct: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQ 180

Query: 181 TIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHL 238
           TIDSENFTVQNSI+FAGPLATTSISTNAKFEVRSPKRVQIKFEEG+IGTPQ    L L
Sbjct: 181 TIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVL 238

Citrus unshiu (taxid: 55188)

>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1

 Score =  293 bits (749), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/237 (66%), Positives = 185/237 (78%), Gaps = 13/237 (5%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPL 59
           MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S+      RP 
Sbjct: 1   MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISV------RPA 54

Query: 60  VLTRAA-DDDEWGPEKEKEEGG----ALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGL 114
              RA  +DDEWG +K+++ G     A+A  EEE P E +EI  LKKALVDSFYGTDRGL
Sbjct: 55  FKVRAVLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGL 114

Query: 115 NATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLAR 174
             + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL YT+F+GLFPLLSR  LPL +
Sbjct: 115 RVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSRN-LPLVK 173

Query: 175 VEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           VEEISQTIDSEN TVQNS++F+GPLATTSI+TNAKFEVRSP RV IKFEEG+IGTPQ
Sbjct: 174 VEEISQTIDSENLTVQNSVQFSGPLATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQ 230

May be involved in carotenoid sequestration within chromoplasts.

Cucumis sativus (taxid: 3659)

>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1

 Score =  289 bits (740), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 183/234 (78%), Gaps = 3/234 (1%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct: 181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum demissum (taxid: 50514)

>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2

 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 182/234 (77%), Gaps = 3/234 (1%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct: 181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum tuberosum (taxid: 4113)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/234 (60%), Positives = 176/234 (75%), Gaps = 10/234 (4%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKP--SILPLNSVRISRSLAKKSFLSIQGFTRARP 58
           MA++   NQFPCKT  Q+  +++  SKP  S++P+++      L ++       F  +R 
Sbjct: 1   MATVQFFNQFPCKTRVQSSANSKPLSKPPSSLVPMSA------LTRRPSFPPGEFAVSRS 54

Query: 59  LVLTRAAD-DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
               R  D +DE  PE  +  G AL +AEE + + V E + LK++LVDS YGTDRGL+A+
Sbjct: 55  DFRVRVIDAEDELDPETSEGGGSALLMAEE-AIESVEETEVLKRSLVDSLYGTDRGLSAS 113

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEI +LITQLE+KNPTPAPT+AL LLN KWIL YTSF GLFPLLSRG +PL +V+E
Sbjct: 114 SETRAEIGDLITQLESKNPTPAPTDALFLLNGKWILAYTSFVGLFPLLSRGIVPLVKVDE 173

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDS+NFTV+NS+ FAGPLATTSISTNAKFE+RSPKRVQIKFEEG+IGTPQ
Sbjct: 174 ISQTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQ 227

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/236 (57%), Positives = 172/236 (72%), Gaps = 15/236 (6%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPL 59
           MA++    QFPCKTL+ +  + +  SK P +LP+NS+       ++S +   G +  RP 
Sbjct: 1   MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSIN------RRSEI---GVSVHRPD 51

Query: 60  VLTRAAD-DDEWGP---EKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLN 115
              RA D DDEWG    E+       ++VA++ + + V E + LK++L DS YGTDRGL+
Sbjct: 52  FKIRATDIDDEWGQDGVERVFASSSTVSVADK-AIESVEETERLKRSLADSLYGTDRGLS 110

Query: 116 ATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARV 175
            +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL YTSF GLFPLLSR   PL +V
Sbjct: 111 VSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKV 170

Query: 176 EEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           +EISQTIDS++FTVQNS+RFAGP +TTS STNAKFE+RSPKRVQIKFE+G+IGTPQ
Sbjct: 171 DEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQ 226

Arabidopsis thaliana (taxid: 3702)

>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/232 (57%), Positives = 168/232 (72%), Gaps = 15/232 (6%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPL 59
           MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +
Sbjct: 1   MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRV 55

Query: 60  VLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSE 119
              RA D  E G         +  +A EE+ ++V E + LK++LVDS YGTDRGL+A+SE
Sbjct: 56  FKVRATDTGEIG---------SALLAAEEAIEDVEETERLKRSLVDSLYGTDRGLSASSE 106

Query: 120 TRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEIS 179
           TRAEI +LITQLE+KNPTPAPTEAL LLN KWIL YTSF  LFPLLSRG +PL +V+EIS
Sbjct: 107 TRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEIS 166

Query: 180 QTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           QTIDS+NFTVQNS+RFAGPL T SISTNAKFE+RSPKRVQIKFE+G+IGTPQ
Sbjct: 167 QTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQ 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 162/236 (68%), Gaps = 21/236 (8%)

Query: 8   NQFPCKT-LSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRAR-------PL 59
           +QF CKT ++ +   +  +  P +LP+N +    ++ +  F       RA        P 
Sbjct: 9   SQFTCKTPITSSSTSSFQSKSPILLPINPINRRIAVHRHDFK-----VRASDVNDEWGPD 63

Query: 60  VLTRAAD-DDEWGPEKEKEEGGALAVAEE---ESPKEVTEIDNLKKALVDSFYGTDRGLN 115
              R  D DDEWGPE     G   +VAE+   E+ +   E + LK+ L  S YGTDRGL+
Sbjct: 64  SKGRGGDVDDEWGPEI----GLNSSVAEKVAEEAIESAEETERLKRVLAGSLYGTDRGLS 119

Query: 116 ATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARV 175
           A+SETRAEI ELITQLE+KNP PAP EAL LLN KWILVYTSF GLFPLLSR   PL +V
Sbjct: 120 ASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYTSFVGLFPLLSRRISPLVKV 179

Query: 176 EEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           +EISQTIDS++FTV NS+RFA PLATTS+STNAKFEVRSPKRVQ+KFE+G+IGTPQ
Sbjct: 180 DEISQTIDSDSFTVHNSVRFASPLATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQ 235

May modulate the action of carotenoids.

Brassica campestris (taxid: 3711)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 135/219 (61%), Positives = 154/219 (70%), Gaps = 16/219 (7%)

Query: 25  TSKPSILPLNSVRISRSLAKKSFLSIQGF-----TRARPLVLTRAA----DDDEWGPEKE 75
           T  PS  P+ S R    L   + L   G       RA P  LT  A     +DEWG E  
Sbjct: 14  TQSPSPSPVASAR----LVAPAVLGFAGAPRFPTLRAAPRRLTARAVAGDAEDEWGKEPA 69

Query: 76  KEEGGALAVAEEESPKE--VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEA 133
            ++GGA A   E        +E+  LK  L ++ YGT+RGL A+SETRAE+VELITQLEA
Sbjct: 70  ADQGGAAAAVAEAPADVPVTSEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEA 129

Query: 134 KNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLP-LARVEEISQTIDSENFTVQNS 192
           +NPTPAPTEALTLLN KWIL YTSFS LFPLL  G+LP L +VEEISQTIDSENFTVQN 
Sbjct: 130 RNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNC 189

Query: 193 IRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           I+F+GPLATTS+STNAKFEVRSPKRVQIKF+EGIIGTPQ
Sbjct: 190 IKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQ 228

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 12/177 (6%)

Query: 66  DDDEWGPE----KEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETR 121
           ++DEWG E     E + G   AV++            LK+ L DS YGT+ G  A SE R
Sbjct: 124 NEDEWGGEIGGETEADAGNGSAVSDPTW--------ELKRCLADSVYGTELGFKAGSEVR 175

Query: 122 AEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQT 181
           AE++EL+ QLEA NPTPAP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+
Sbjct: 176 AEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTPLLKVKSISQS 235

Query: 182 IDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHL 238
           ID+ N  + NS   + P A  S S  A FEVRSP R+++ F+EG +  P  K+ + L
Sbjct: 236 IDTNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDL 292

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
62900641	323	RecName: Full=Plastid-lipid-associated p	0.959	0.736	0.966	1e-128
255566853	321	Plastid-lipid-associated protein, chloro	0.899	0.694	0.705	6e-83
350539549	326	plastid lipid associated protein CHRC [S	0.931	0.708	0.679	1e-80
224118150	329	predicted protein [Populus trichocarpa]	0.955	0.720	0.677	7e-79
118489702	329	unknown [Populus trichocarpa x Populus d	0.951	0.717	0.662	1e-78
147787229	281	hypothetical protein VITISV_012048 [Viti	0.729	0.644	0.801	1e-77
449434000	322	PREDICTED: chromoplast-specific caroteno	0.903	0.695	0.666	6e-77
25453087	326	RecName: Full=Light-induced protein, chl	0.931	0.708	0.683	7e-76
22261807	326	RecName: Full=Light-induced protein, chl	0.931	0.708	0.683	2e-75
356555702	306	PREDICTED: plastid-lipid-associated prot	0.737	0.598	0.772	1e-72

>gi|62900641|sp|Q9ZWQ8.1|PAP_CITUN RecName: Full=Plastid-lipid-associated protein, chloroplastic; AltName: Full=CitPAP; Flags: Precursor gi|3928760|dbj|BAA34702.1| homolog to plastid-lipid-associated protein [Citrus unshiu]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/238 (96%), Positives = 232/238 (97%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV
Sbjct: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60

Query: 61  LTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120
           LTRAADDDEWGPEKEKE GGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET
Sbjct: 61  LTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSET 120

Query: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQ 180
           RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQ
Sbjct: 121 RAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQ 180

Query: 181 TIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSKTQLHL 238
           TIDSENFTVQNSI+FAGPLATTSISTNAKFEVRSPKRVQIKFEEG+IGTPQ    L L
Sbjct: 181 TIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVL 238

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566853|ref|XP_002524410.1| Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis] gi|223536371|gb|EEF38021.1| Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 165/234 (70%), Positives = 186/234 (79%), Gaps = 11/234 (4%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASISQ NQFPCKTLS  P +++FTS+PS+    S++ + S+ + +       T  RP+ 
Sbjct: 1   MASISQLNQFPCKTLSTPPCNSKFTSRPSVF---SIKTTTSICRPTL-----STGTRPVF 52

Query: 61  LTRAAD-DDEWGPEKEKEEGGALAVAEEES--PKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             RA D +DEWGP+ E           EE   P EVTEID+LKK LVDSFYGTDRGL AT
Sbjct: 53  SIRAVDAEDEWGPDYEDSAVAVAEEESEEKLKPTEVTEIDSLKKQLVDSFYGTDRGLKAT 112

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEIVELITQLE+KNPT APTEALTLLN KWIL YTSFSGLFPLLSRGTLPL +VEE
Sbjct: 113 SETRAEIVELITQLESKNPTAAPTEALTLLNGKWILAYTSFSGLFPLLSRGTLPLVKVEE 172

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDSENFTVQNS++F+GPLATTSISTNAKFEVRSPKRVQIKF+EGIIGTPQ
Sbjct: 173 ISQTIDSENFTVQNSVQFSGPLATTSISTNAKFEVRSPKRVQIKFDEGIIGTPQ 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539549|ref|NP_001234183.1| plastid lipid associated protein CHRC [Solanum lycopersicum] gi|83743301|gb|ABC42191.1| plastid lipid associated protein CHRC [Solanum lycopersicum]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/234 (67%), Positives = 182/234 (77%), Gaps = 3/234 (1%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PC+TL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCRTLQITSQYSKPTSKISTLPISSTNFPSKTELHRAISVKEFTYPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE EK   G +AV +EE PKE +EI+ LKK L DSFYGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEKISPGGVAVVDEEPPKEPSEIELLKKQLADSFYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG L L RVEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLLLVRVEE 180

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct: 181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118150|ref|XP_002331570.1| predicted protein [Populus trichocarpa] gi|222873794|gb|EEF10925.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 192/245 (78%), Gaps = 8/245 (3%)

Query: 1   MASISQTNQFPCKTLS-QNPPHNQFTS-KPSILPLNSVR----ISRSLAKKSFL-SIQGF 53
           MA+ISQ NQFPCKTLS + P  + FTS +PSI+PLNS++     + S+ K   L + +  
Sbjct: 1   MAAISQLNQFPCKTLSSKTPLFSHFTSSRPSIIPLNSIKNNPTTNNSILKPRILVTREQP 60

Query: 54  TRARPLVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRG 113
           T+ R L L +A D+DE  PE E     ALA   EE  KE+ E+D LK  LVD+FYGTDRG
Sbjct: 61  TKKRNLFLVKAVDEDEGSPENEGPPV-ALAEKGEEELKELAEVDRLKGQLVDTFYGTDRG 119

Query: 114 LNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLA 173
           LNATSETRAE+VELITQLEA+NP PAPTEALTLLN KWIL YTSF+GLFPLLSRGTLPL 
Sbjct: 120 LNATSETRAEVVELITQLEARNPNPAPTEALTLLNGKWILAYTSFAGLFPLLSRGTLPLV 179

Query: 174 RVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSK 233
           +VEEISQTIDSEN TVQNS++F+GPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTP+  
Sbjct: 180 KVEEISQTIDSENLTVQNSVQFSGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPKLT 239

Query: 234 TQLHL 238
             + L
Sbjct: 240 DSIEL 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489702|gb|ABK96652.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/252 (66%), Positives = 194/252 (76%), Gaps = 16/252 (6%)

Query: 1   MASISQTNQFPCKTL-SQNPPHNQFTS-KPSILPLNSVR----ISRSLAKKSFLSIQGFT 54
           MA+ISQ NQFPCKTL S+ P  + FTS +PS +PLNS++     + S+ K+  L     T
Sbjct: 1   MAAISQLNQFPCKTLYSKTPLFSHFTSSRPSTIPLNSIKNNPTTNNSILKQRIL----VT 56

Query: 55  RARP-----LVLTRAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYG 109
           R +P     L L +A D+DE  PE E     ALA   EE  KE+TE+D LK  LVD+FYG
Sbjct: 57  REQPAKKRNLFLVKAVDEDEGSPENEGPPV-ALAEKGEEELKELTEVDRLKGQLVDTFYG 115

Query: 110 TDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGT 169
           TDRGLNATSETRAE+VELITQLEA+NP PAPTEALTLLN KWIL YTSF+GLFPLLSRGT
Sbjct: 116 TDRGLNATSETRAEVVELITQLEARNPNPAPTEALTLLNGKWILAYTSFAGLFPLLSRGT 175

Query: 170 LPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGT 229
           LPL +VEEISQTIDSEN TVQNS++F+GPLATTSISTNAKFEVRSPKRVQIKFEEGIIGT
Sbjct: 176 LPLVKVEEISQTIDSENLTVQNSVQFSGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGT 235

Query: 230 PQSKTQLHLLQR 241
           P+    + L ++
Sbjct: 236 PKLTDSIELPEK 247

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787229|emb|CAN69132.1| hypothetical protein VITISV_012048 [Vitis vinifera]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 161/186 (86%), Gaps = 5/186 (2%)

Query: 55  RARPLVLTRAADDDEWGPEKEK--EEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDR 112
           R RP+VL R A DDEWGPEK +   EG  +AV EEE  KE+T   +LKKALVDSFYGTDR
Sbjct: 14  RGRPVVLVRTALDDEWGPEKXEPEGEGSTVAVVEEEKSKEIT---SLKKALVDSFYGTDR 70

Query: 113 GLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPL 172
           GL ATSETRAEIVELITQLEAKNPTPAPTEALTLLN KWIL YTSF+GLFPLLSRGTLPL
Sbjct: 71  GLKATSETRAEIVELITQLEAKNPTPAPTEALTLLNGKWILAYTSFAGLFPLLSRGTLPL 130

Query: 173 ARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQS 232
            +VEEISQTIDSENFTVQNS++F+GPLATTSISTNAKFEVRSPKRVQIKF+EGIIGTPQ 
Sbjct: 131 VKVEEISQTIDSENFTVQNSVQFSGPLATTSISTNAKFEVRSPKRVQIKFQEGIIGTPQL 190

Query: 233 KTQLHL 238
              + L
Sbjct: 191 TDSIEL 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434000|ref|XP_004134784.1| PREDICTED: chromoplast-specific carotenoid-associated protein, chromoplast-like [Cucumis sativus] gi|449524631|ref|XP_004169325.1| PREDICTED: chromoplast-specific carotenoid-associated protein, chromoplast-like [Cucumis sativus] gi|62899808|sp|Q96398.1|CHRC_CUCSA RecName: Full=Chromoplast-specific carotenoid-associated protein, chromoplast; Flags: Precursor gi|1523992|emb|CAA64846.1| chromoplast-specific carotenoid-associated protein, CHRC [Cucumis sativus] gi|4138857|gb|AAD05165.1| chromoplast-specific carotenoid-associated protein CHRC [Cucumis sativus]

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 158/237 (66%), Positives = 185/237 (78%), Gaps = 13/237 (5%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPL 59
           MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S+      RP 
Sbjct: 1   MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISV------RPA 54

Query: 60  VLTRAA-DDDEWGPEKEKEEGG----ALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGL 114
              RA  +DDEWG +K+++ G     A+A  EEE P E +EI  LKKALVDSFYGTDRGL
Sbjct: 55  FKVRAVLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGL 114

Query: 115 NATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLAR 174
             + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL YT+F+GLFPLLSR  LPL +
Sbjct: 115 RVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSRN-LPLVK 173

Query: 175 VEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           VEEISQTIDSEN TVQNS++F+GPLATTSI+TNAKFEVRSP RV IKFEEG+IGTPQ
Sbjct: 174 VEEISQTIDSENLTVQNSVQFSGPLATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQ 230

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25453087|sp|O99019.1|LIPC_SOLDE RecName: Full=Light-induced protein, chloroplastic; AltName: Full=C40.4; Flags: Precursor gi|4007750|emb|CAA10372.1| fibrillin [Solanum demissum]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 183/234 (78%), Gaps = 3/234 (1%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct: 181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22261807|sp|P80471.2|LIPC_SOLTU RecName: Full=Light-induced protein, chloroplastic; AltName: Full=Drought-induced stress protein CDSP-34; Flags: Precursor gi|2598049|emb|CAA75558.1| chloroplast drought-induced stress protein, 34 kD) [Solanum tuberosum]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 182/234 (77%), Gaps = 3/234 (1%)

Query: 1   MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
           MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct: 1   MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60

Query: 61  LTRAAD---DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
             +A +   +DEWGPE E+   G +AV EEE PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct: 61  TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query: 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
           SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180

Query: 178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
           ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct: 181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555702|ref|XP_003546169.1| PREDICTED: plastid-lipid-associated protein, chloroplastic-like [Glycine max]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 55  RARPLVLTRAA-DDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRG 113
           R R LV  RA   DDEWGPEKE+  GG +AV EE+  K  TE + LKKALVDSFYGTDRG
Sbjct: 38  RPRLLVRVRAVTSDDEWGPEKEEAYGGGVAV-EEKPTKSETETEKLKKALVDSFYGTDRG 96

Query: 114 LNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLA 173
           L ATSETRAEIVELITQLEAKNP P PT+ALTLLN KWIL YTSF+GLFPLLS GTLPL 
Sbjct: 97  LKATSETRAEIVELITQLEAKNPNPVPTDALTLLNGKWILAYTSFAGLFPLLSSGTLPLV 156

Query: 174 RVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQSK 233
           +VEEISQ IDS NFTVQNS++FAGPLATTSISTNAKF+VRSPKRVQIKFEEGIIGTPQ  
Sbjct: 157 KVEEISQIIDSLNFTVQNSVQFAGPLATTSISTNAKFDVRSPKRVQIKFEEGIIGTPQLT 216

Query: 234 TQLHL 238
             L +
Sbjct: 217 DSLEI 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.931	0.708	0.628	1.2e-67
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.931	0.708	0.628	1.9e-67
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.875	0.7	0.551	8.4e-58
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.895	0.698	0.544	2.2e-57
TAIR|locus:2062497	376	AT2G35490 [Arabidopsis thalian	0.564	0.372	0.5	1.5e-33
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.564	0.512	0.267	1.3e-06

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 147/234 (62%), Positives = 166/234 (70%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
             MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P  
Sbjct:     1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60

Query:    61 LTRAAXXXXXXX---XXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
               +A                            PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct:    61 TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query:   118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
             SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEE
Sbjct:   121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180

Query:   178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
             ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct:   181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 147/234 (62%), Positives = 165/234 (70%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
             MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P  
Sbjct:     1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60

Query:    61 LTRAAXXXXXXX---XXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNAT 117
               +A                            PKE +EI+ LKK L DS YGT+RGL+A+
Sbjct:    61 TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120

Query:   118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEE 177
             SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEE
Sbjct:   121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180

Query:   178 ISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
             ISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ
Sbjct:   181 ISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 234

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 128/232 (55%), Positives = 159/232 (68%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPL 59
             MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +
Sbjct:     1 MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRV 55

Query:    60 VLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSE 119
                RA                          ++V E + LK++LVDS YGTDRGL+A+SE
Sbjct:    56 FKVRATDTGEIGSALLAAEEAI---------EDVEETERLKRSLVDSLYGTDRGLSASSE 106

Query:   120 TRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEIS 179
             TRAEI +LITQLE+KNPTPAPTEAL LLN KWIL YTSF  LFPLLSRG +PL +V+EIS
Sbjct:   107 TRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEIS 166

Query:   180 QTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
             QTIDS+NFTVQNS+RFAGPL T SISTNAKFE+RSPKRVQIKFE+G+IGTPQ
Sbjct:   167 QTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQ 218

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 128/235 (54%), Positives = 158/235 (67%)

Query:     1 MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPL 59
             MA++    QFPCKTL+ +  + +  SK P +LP+NS+       ++S +   G +  RP 
Sbjct:     1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSIN------RRSEI---GVSVHRPD 51

Query:    60 VLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPK---EVTEIDNLKKALVDSFYGTDRGLNA 116
                RA                        + K    V E + LK++L DS YGTDRGL+ 
Sbjct:    52 FKIRATDIDDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSV 111

Query:   117 TSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVE 176
             +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL YTSF GLFPLLSR   PL +V+
Sbjct:   112 SSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVD 171

Query:   177 EISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ 231
             EISQTIDS++FTVQNS+RFAGP +TTS STNAKFE+RSPKRVQIKFE+G+IGTPQ
Sbjct:   172 EISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQ 226

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2062497 AT2G35490 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 70/140 (50%), Positives = 94/140 (67%)

Query:    99 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSF 158
             LK+ L DS YGT+ G  A SE RAE++EL+ QLEA NPTPAP E   LL+  W+L+YT+F
Sbjct:   153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAF 212

Query:   159 SGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRV 218
             S L PLL+ G+ PL +V+ ISQ+ID+ N  + NS   + P A  S S  A FEVRSP R+
Sbjct:   213 SELIPLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRI 272

Query:   219 QIKFEEGIIGTPQSKTQLHL 238
             ++ F+EG +  P  K+ + L
Sbjct:   273 EVSFKEGTLKPPVIKSSVDL 292

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 39/146 (26%), Positives = 70/146 (47%)

Query:    91 KEVTEIDNLKKALVDSFYGTDRGL-NATSETRAEIVELITQLEAKNPTPAPTEALTLLNA 149
             +E+T + ++K+ L ++  G +RG+    S+ + EI  L+  LE +NPTP PT  L  +  
Sbjct:    79 EEIT-VSHIKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGG 137

Query:   150 KWILVYTSFSGLFPLLSR-GTLPLARVEEISQTIDSENFTVQNSIRF--AG-PLATTSIS 205
              W L+Y++ + L    ++ G      + ++ Q ID       + ++F   G  L      
Sbjct:   138 CWKLIYSTITVLGSKRTKLGLRDFVSLGDLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFR 197

Query:   206 TNAKFEVRSPKRVQIKFEEGIIGTPQ 231
               A F++ S   V+I +E   I   Q
Sbjct:   198 IVASFKISSKSSVEITYESSTIKPDQ 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      248       225   0.00077  113 3  11 22  0.41    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.14u 0.13s 18.27t   Elapsed:  00:00:00
  Total cpu time:  18.14u 0.13s 18.27t   Elapsed:  00:00:00
  Start:  Sat May 11 01:01:42 2013   End:  Sat May 11 01:01:42 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81439	PAP1_ARATH	No assigned EC number	0.5762	0.8911	0.6949	yes	no
Q6K439	PAP2_ORYSJ	No assigned EC number	0.6164	0.8185	0.6363	yes	no
Q9ZWQ8	PAP_CITUN	No assigned EC number	0.9663	0.9596	0.7368	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	1e-60

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  189 bits (481), Expect = 1e-60
 Identities = 84/138 (60%), Positives = 103/138 (74%)

Query: 99  LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSF 158
           LK+ L+D+ YGT+RGL A+S+ RAEI   +TQLEA NPTPAPTE+L LLN KW L+YT+ 
Sbjct: 3   LKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTS 62

Query: 159 SGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRV 218
             L PLL+RG LPL +V +I QTID  N TV NS+ F+GPLA  S S  AKFE+RSPKRV
Sbjct: 63  KELLPLLARGRLPLLKVGQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSPKRV 122

Query: 219 QIKFEEGIIGTPQSKTQL 236
           QI+FE G++GTPQ     
Sbjct: 123 QIRFERGVLGTPQLLKGS 140

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.97

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.97  E-value=6.8e-31  Score=225.03  Aligned_cols=136  Identities=46%  Similarity=0.757  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccccccCcEEEEEEeccCCcccccccCCCCceeec
Q 025746           97 DNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVE  176 (248)
Q Consensus        97 ~~lK~~LL~av~~t~RG~~as~e~r~eI~elI~qLEalNPtp~P~~sl~lL~G~W~L~YTS~~~~l~ll~~g~lP~v~vG  176 (248)
                      +++|++||+++++++||+.+++++|++|+++|++||++||+++|+++.++|+|+|+|+|||+.+..+.+..+..+++.+|
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~   80 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG   80 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence            47999999999999999999999999999999999999999999986699999999999999998766656677889999


Q ss_pred             ceEEEEeCCCceEEEEEEeec-CceeEEEEEEEEEEEeCCCeEEEEEEeeEEcCCcc
Q 025746          177 EISQTIDSENFTVQNSIRFAG-PLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQS  232 (248)
Q Consensus       177 ~I~Q~ID~~~~~v~NvV~f~~-Pl~~gsv~v~Asfev~s~~Rv~V~Fe~a~I~~p~l  232 (248)
                      ++||+||.+++++.|+|+|.. |++.+.+.+.++|++.+++|+.++|+++.++++.+
T Consensus        81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~  137 (198)
T PF04755_consen   81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSL  137 (198)
T ss_pred             ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccce
Confidence            999999999999999999987 77889999999999999999999999999988665

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 30/221 (13%), Positives = 62/221 (28%), Gaps = 63/221 (28%)

Query: 12  CKTLSQNPPHNQFTSKPSILPLNSV--RISRSLAKKSF------LS-------IQGFT-R 55
              +  N       S    L ++S+   + R L  K +      L           F   
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 56  ARPLVLTRAA----------------DDDEWGPEKEKEEG---GALAVAEEESPKEVTEI 96
            + L+ TR                  D        ++ +      L    ++ P+EV   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 97  DNLKKALV-----DSFYGTDRGLNATSETRAEIVEL-ITQLEAKNPTPAPTEALTLLNAK 150
           +  + +++     D     D   +   +    I+E  +  LE       P E   +    
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-------PAEYRKM---- 374

Query: 151 WILVYTSFSGLFP---LLSRGTLPL---ARVEEISQTIDSE 185
               +   S +FP    +    L L     ++     + ++
Sbjct: 375 ----FDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
4i95_A	142	Putative uncharacterized protein; lipocalin-like d	81.67

>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A

Probab=81.67  E-value=14  Score=30.22  Aligned_cols=79  Identities=13%  Similarity=0.098  Sum_probs=51.6

Q ss_pred             ccCcEEEEEEeccCCcccccccCCCCceeecceEEEEeCCCceEEEEEEeecCceeEEEEEEEEEEEeCCCeEEEEEEee
Q 025746          146 LLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEG  225 (248)
Q Consensus       146 lL~G~W~L~YTS~~~~l~ll~~g~lP~v~vG~I~Q~ID~~~~~v~NvV~f~~Pl~~gsv~v~Asfev~s~~Rv~V~Fe~a  225 (248)
                      -|.|.|+|..-.+.+..      ..-.++-+..+-+|. ++|++.|.+-+.+  ..+.+...+.++..|+.......++.
T Consensus        11 ~L~GvWQ~C~y~s~~pd------~~g~L~psn~lKIlS-dDgtF~Ni~m~~~--~~aiIt~~GtY~~~SD~~Y~E~IeKn   81 (142)
T 4i95_A           11 HLQGIWQLCHYVSENPD------IPGVLKPSNTFKVLS-DDGRIVNFTIRPG--TDAIITGYGTYRQISAAAYKESIEKN   81 (142)
T ss_dssp             SCCEEEEEEEEECSSTT------SCCEEEEEEEEEEEC-TTSEEEEEECCTT--SCCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             cceeEeEEEEEecCCCC------CceEeccCccEEEEc-CCCcEEEEEEecC--CCcEEEEeEEEEecCCcceeeeeccc
Confidence            49999999866554421      111234556777775 5669999998842  34567778888888887766655554


Q ss_pred             EEcCCcccc
Q 025746          226 IIGTPQSKT  234 (248)
Q Consensus       226 ~I~~p~l~~  234 (248)
                       +..|.+.+
T Consensus        82 -i~lp~l~g   89 (142)
T 4i95_A           82 -IHLPMLDN   89 (142)
T ss_dssp             -SSSGGGTT
T ss_pred             -ccCcccCC
Confidence             66665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00