Citrus Sinensis ID: 025823

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc
HHcccEEccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccc
mdgshtrrgqpcwfrvpkvgmiaaNDGVLLRNHISRILKnhfrdkpyyvDLLDLFNEVEFQTASGQMIDLITTiegekdlskyslplhRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQvqddfldcfgspevigkvgtdiedykCSWLVVKALELCNEEQKKLVhenygkvdpACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
mdgshtrrgqpcwfrvpkVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKlvhenygkvdpACVAKVKELYKTLDLEGAFVEYEKESYEKLTKsieahptkevQAVLKSFLAKIYKRQK
MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
**********PCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAH*TKEVQAVLKSFLAKIY****
MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQ*
********GQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
***SHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQ*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
P49351342 Farnesyl pyrophosphate sy N/A no 1.0 0.722 0.825 1e-121
Q7XYS9346 Farnesyl diphosphate synt N/A no 1.0 0.713 0.821 1e-121
O24242342 Farnesyl pyrophosphate sy N/A no 1.0 0.722 0.813 1e-120
P49350343 Farnesyl pyrophosphate sy N/A no 1.0 0.720 0.821 1e-120
P49352342 Farnesyl pyrophosphate sy N/A no 1.0 0.722 0.817 1e-120
O24241342 Farnesyl pyrophosphate sy N/A no 1.0 0.722 0.813 1e-120
O64905341 Farnesyl pyrophosphate sy N/A no 0.995 0.721 0.813 1e-119
Q43315342 Farnesyl pyrophosphate sy yes no 1.0 0.722 0.805 1e-118
Q09152384 Farnesyl pyrophosphate sy no no 1.0 0.643 0.793 1e-118
Q7XYT0342 Farnesyl diphosphate synt N/A no 1.0 0.722 0.789 1e-116
>sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/247 (82%), Positives = 223/247 (90%)

Query: 1   MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
           MD SHTRRGQPCWFRVPKVGMIAANDGVLLRNHI RILK HFR KPYY DLLDLFNEVEF
Sbjct: 96  MDNSHTRRGQPCWFRVPKVGMIAANDGVLLRNHIPRILKKHFRGKPYYADLLDLFNEVEF 155

Query: 61  QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 120
           QTASGQMIDLITT+EGEKDLSKY+L LHRRIVQYKTAYYSFYLPVACALLM GENLD H+
Sbjct: 156 QTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMVGENLDNHI 215

Query: 121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLV 180
           +VK+ILV MG YFQVQDD+LDCFG+PE IGK+GTDIED+KCSWLVVKALEL N+EQKK++
Sbjct: 216 DVKNILVDMGTYFQVQDDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALELSNDEQKKVL 275

Query: 181 HENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLA 240
           ++NYGK DPA VAKVK LY  L+L+G F EYE +SYEKL  SIEAHP+K VQA+LKSFL 
Sbjct: 276 YDNYGKPDPANVAKVKALYDELNLQGVFTEYESKSYEKLVTSIEAHPSKAVQALLKSFLG 335

Query: 241 KIYKRQK 247
           KIYKRQK
Sbjct: 336 KIYKRQK 342
Catalyzes the sequential condensation of isopentenyl pyrophosphate with the allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultant geranylpyrophosphate to the ultimate product farnesyl pyrophosphate.
Lupinus albus (taxid: 3870)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q7XYS9|FPPS1_ARTSI Farnesyl diphosphate synthase 1 OS=Artemisia spiciformis GN=FDS-1 PE=1 SV=1 Back     alignment and function description
>sp|O24242|FPPS2_PARAR Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1 Back     alignment and function description
>sp|P49350|FPPS_ARTAN Farnesyl pyrophosphate synthase OS=Artemisia annua GN=FPS1 PE=2 SV=1 Back     alignment and function description
>sp|P49352|FPPS2_LUPAL Farnesyl pyrophosphate synthase 2 OS=Lupinus albus GN=FPS2 PE=2 SV=1 Back     alignment and function description
>sp|O24241|FPPS1_PARAR Farnesyl pyrophosphate synthase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1 Back     alignment and function description
>sp|O64905|FPPS_HELAN Farnesyl pyrophosphate synthase OS=Helianthus annuus GN=FPS1 PE=2 SV=1 Back     alignment and function description
>sp|Q43315|FPPS2_ARATH Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1 Back     alignment and function description
>sp|Q09152|FPPS1_ARATH Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XYT0|FPPS2_ARTSI Farnesyl diphosphate synthase 2 OS=Artemisia spiciformis GN=FDS-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
14573639341 farnesyldiphosphate synthase [x Citrofor 1.0 0.724 0.991 1e-142
225462001341 PREDICTED: farnesyl pyrophosphate syntha 1.0 0.724 0.862 1e-125
118486658342 unknown [Populus trichocarpa] 1.0 0.722 0.850 1e-124
62199628341 farnesyl diphosphate synthase [Vitis vin 1.0 0.724 0.854 1e-124
224089549342 predicted protein [Populus trichocarpa] 1.0 0.722 0.846 1e-124
309951535345 farnesyl diphosphate synthase [Catharant 1.0 0.715 0.858 1e-123
22676905342 farnesyl diphosphate synthase [Hevea bra 1.0 0.722 0.846 1e-122
55710092342 farnesyl diphosphate synthase [Centella 1.0 0.722 0.838 1e-122
285013665342 farnesyl pyrophosphate synthase [Medicag 1.0 0.722 0.838 1e-121
405789928291 putative farnesyl diphosphate synthase, 1.0 0.848 0.834 1e-121
>gi|14573639|gb|AAK68152.1| farnesyldiphosphate synthase [x Citrofortunella microcarpa] Back     alignment and taxonomy information
 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/247 (99%), Positives = 246/247 (99%)

Query: 1   MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
           MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF
Sbjct: 95  MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 154

Query: 61  QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 120
           QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV
Sbjct: 155 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 214

Query: 121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLV 180
           EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQK +V
Sbjct: 215 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKNVV 274

Query: 181 HENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLA 240
           HENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLA
Sbjct: 275 HENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLA 334

Query: 241 KIYKRQK 247
           KIYKRQK
Sbjct: 335 KIYKRQK 341

Source: x Citrofortunella microcarpa

Species: x Citrofortunella microcarpa

Genus: x Citrofortunella

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462001|ref|XP_002272641.1| PREDICTED: farnesyl pyrophosphate synthase 1 [Vitis vinifera] gi|296089967|emb|CBI39786.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118486658|gb|ABK95166.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|62199628|gb|AAX76910.1| farnesyl diphosphate synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224089549|ref|XP_002308751.1| predicted protein [Populus trichocarpa] gi|222854727|gb|EEE92274.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|309951535|gb|ADO95193.1| farnesyl diphosphate synthase [Catharanthus roseus] Back     alignment and taxonomy information
>gi|22676905|gb|AAM98379.1| farnesyl diphosphate synthase [Hevea brasiliensis] gi|34013692|gb|AAQ56011.1| farnesyl diphosphate synthase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|55710092|gb|AAV58896.1| farnesyl diphosphate synthase [Centella asiatica] Back     alignment and taxonomy information
>gi|285013665|gb|ADC32809.1| farnesyl pyrophosphate synthase [Medicago sativa] Back     alignment and taxonomy information
>gi|405789928|gb|AFS28707.1| putative farnesyl diphosphate synthase, partial [Olea europaea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2130654342 FPS2 "farnesyl diphosphate syn 1.0 0.722 0.805 1.1e-108
TAIR|locus:2160947384 FPS1 "farnesyl diphosphate syn 1.0 0.643 0.793 2.4e-108
SGD|S000003703352 ERG20 "Farnesyl pyrophosphate 1.0 0.701 0.52 2.8e-66
CGD|CAL0002030351 ERG20 [Candida albicans (taxid 1.0 0.703 0.528 1.1e-64
UNIPROTKB|Q59TD9351 ERG20 "Likely farnesyl diphosp 1.0 0.703 0.528 1.1e-64
UNIPROTKB|P08836367 FDPS "Farnesyl pyrophosphate s 1.0 0.673 0.504 1.4e-64
ZFIN|ZDB-GENE-050506-78359 fdps "farnesyl diphosphate syn 1.0 0.688 0.5 8.8e-63
MGI|MGI:104888353 Fdps "farnesyl diphosphate syn 1.0 0.699 0.491 4.8e-62
RGD|68953353 Fdps "farnesyl diphosphate syn 1.0 0.699 0.487 6.2e-62
UNIPROTKB|F1P926421 FDPS "Uncharacterized protein" 1.0 0.586 0.487 2.1e-61
TAIR|locus:2130654 FPS2 "farnesyl diphosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 199/247 (80%), Positives = 221/247 (89%)

Query:     1 MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
             MD S TRRGQPCWFR PKVGMIA NDG+LLRNHI RILK HFR+ PYYVDL+DLFNEVEF
Sbjct:    96 MDNSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEF 155

Query:    61 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 120
             QTA GQMIDLITT +GEKDLSKYSL +HRRIV+YKTAYYSFYLPVACALLMAGENL+ H 
Sbjct:   156 QTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENLENHT 215

Query:   121 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLV 180
             +VK +LV MGIYFQVQDD+LDCF  PE +GK+GTDIED+KCSWLVVKALE C+EEQ K++
Sbjct:   216 DVKTVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQTKIL 275

Query:   181 HENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLA 240
             +ENYGK +P+ VAKVK LYK LDLEGAF+EYEKESYEKLTK IEAH +K +QAVLKSFLA
Sbjct:   276 YENYGKAEPSNVAKVKALYKELDLEGAFMEYEKESYEKLTKLIEAHQSKAIQAVLKSFLA 335

Query:   241 KIYKRQK 247
             KIYKRQK
Sbjct:   336 KIYKRQK 342
GO:0005737 "cytoplasm" evidence=ISM
GO:0045337 "farnesyl diphosphate biosynthetic process" evidence=IGI;ISS;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0004161 "dimethylallyltranstransferase activity" evidence=IGI;IDA
GO:0004337 "geranyltranstransferase activity" evidence=IGI;IDA
TAIR|locus:2160947 FPS1 "farnesyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003703 ERG20 "Farnesyl pyrophosphate synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0002030 ERG20 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59TD9 ERG20 "Likely farnesyl diphosphate synthetase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|P08836 FDPS "Farnesyl pyrophosphate synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050506-78 fdps "farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:104888 Fdps "farnesyl diphosphate synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|68953 Fdps "farnesyl diphosphate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P926 FDPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XYT0FPPS2_ARTSI2, ., 5, ., 1, ., 1, 00.78941.00.7222N/Ano
O64905FPPS_HELAN2, ., 5, ., 1, ., 10.81370.99590.7214N/Ano
P08836FPPS_CHICK2, ., 5, ., 1, ., 10.50401.00.6730yesno
O24241FPPS1_PARAR2, ., 5, ., 1, ., 10.81371.00.7222N/Ano
Q7XYS9FPPS1_ARTSI2, ., 5, ., 1, ., 1, 00.82181.00.7138N/Ano
O24242FPPS2_PARAR2, ., 5, ., 1, ., 10.81371.00.7222N/Ano
P08524FPPS_YEAST2, ., 5, ., 1, ., 10.521.00.7017yesno
Q43315FPPS2_ARATH2, ., 5, ., 1, ., 10.80561.00.7222yesno
P49351FPPS1_LUPAL2, ., 5, ., 1, ., 10.82591.00.7222N/Ano
P49350FPPS_ARTAN2, ., 5, ., 1, ., 10.82181.00.7201N/Ano
P49353FPPS_MAIZE2, ., 5, ., 1, ., 10.75301.00.7057N/Ano
P49352FPPS2_LUPAL2, ., 5, ., 1, ., 10.81781.00.7222N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.100.946
4th Layer2.5.1.10.946
3rd Layer2.5.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033429001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (341 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00001656001
SubName- Full=Chromosome undetermined scaffold_119, whole genome shotgun sequence; (242 aa)
   • •• 0.976
GSVIVG00025071001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (234 aa)
   • •• 0.975
GSVIVG00035946001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (413 aa)
   • •• 0.972
GPPS
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (422 aa)
     •••0.919
GSVIVG00007515001
SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (245 aa)
     •• 0.919
GSVIVG00024111001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (311 aa)
     •• 0.919
GSVIVG00036188001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence (Chromosome undetermine [...] (341 aa)
     •• 0.906
GSVIVG00019758001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (285 aa)
     •• 0.905
GSVIVG00027948001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa)
     •••0.905
GSVIVG00025000001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (368 aa)
     •••0.903

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
pfam00348260 pfam00348, polyprenyl_synt, Polyprenyl synthetase 2e-67
cd00685259 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat 1e-53
cd00867236 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S 7e-40
COG0142322 COG0142, IspA, Geranylgeranyl pyrophosphate syntha 1e-32
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-23
PRK10581299 PRK10581, PRK10581, geranyltranstransferase; Provi 6e-04
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase Back     alignment and domain information 
 Score =  209 bits (533), Expect = 2e-67
 Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 9/212 (4%)

Query: 1   MDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE 59
           MD S  RRG+P C  +  + G I A D +L R      L  H R +P Y+ + +L N V 
Sbjct: 56  MDNSDLRRGKPTCHKKFGEAGAILAGDALLSRAFQLLALLGHVRPEPKYILISELANAVG 115

Query: 60  FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH 119
            Q   GQ++DL T  +        +L  + RIV YKTA   FY  V    ++AG + +  
Sbjct: 116 AQGEVGQLMDLETEGK------DITLEEYLRIVSYKTAAL-FYASVQLGAIVAGADEEDE 168

Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKK 178
            ++ D    +G+ FQ+QDD LD  G  E +GK VGTD+++ K +  V+ ALE   EEQ+K
Sbjct: 169 KDLYDFGRDLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQRK 228

Query: 179 LVHENYGKVDPACVAKVKELYKTLDLEGAFVE 210
           L+ E Y +      A+   L K L+    ++E
Sbjct: 229 LLREAYEQKLSEAAAQGVALTKALEALAEYIE 260

Length = 260
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PRK10888323 octaprenyl diphosphate synthase; Provisional 100.0
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 100.0
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 100.0
PLN02890422 geranyl diphosphate synthase 100.0
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 100.0
PLN02857416 octaprenyl-diphosphate synthase 100.0
CHL00151323 preA prenyl transferase; Reviewed 100.0
PRK10581299 geranyltranstransferase; Provisional 100.0
KOG0776384 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 100.0
KOG0711347 consensus Polyprenyl synthetase [Coenzyme transpor 100.0
PF00348260 polyprenyl_synt: Polyprenyl synthetase; InterPro: 100.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 100.0
KOG0777322 consensus Geranylgeranyl pyrophosphate synthase/Po 99.98
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.82
PLN02632334 phytoene synthase 96.51
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 96.21
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 95.98
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 95.96
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 95.54
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 95.52
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 91.55
COG1562288 ERG9 Phytoene/squalene synthetase [Lipid metabolis 90.25
PF07307212 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE 87.53
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 82.08
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.1e-54  Score=378.35  Aligned_cols=234  Identities=19%  Similarity=0.244  Sum_probs=215.9

Q ss_pred             CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823            1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD   79 (247)
Q Consensus         1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d   79 (247)
                      ||+|++|||+||+|++||+. +|++||+++..  +|+++.+.     ...+++..+++++..+++||.+|+.+..+..  
T Consensus        87 ~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~--  157 (323)
T PRK10888         87 VDESDMRRGKATANAAFGNAASVLVGDFIYTR--AFQMMTSL-----GSLKVLEVMSEAVNVIAEGEVLQLMNVNDPD--  157 (323)
T ss_pred             ccCCcccCCCCCHHHHhCccHHHHHHHHHHHH--HHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence            79999999999999999998 89999999964  68888764     2467889999999999999999998765432  


Q ss_pred             CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823           80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED  158 (247)
Q Consensus        80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~  158 (247)
                         +++++|++|+.+|||+| |++||.+|++++|++++.++.+++||.++|+||||+||++||+++++.+|| .|+||++
T Consensus       158 ---~s~~~y~~~i~~KTa~l-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~  233 (323)
T PRK10888        158 ---ITEENYMRVIYSKTARL-FEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNE  233 (323)
T ss_pred             ---CCHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhc
Confidence               69999999999999999 999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CcccHHHHHHHhhcCHHHHHHHHHhhCCCC-hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 025823          159 YKCSWLVVKALELCNEEQKKLVHENYGKVD-PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKS  237 (247)
Q Consensus       159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~-~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~  237 (247)
                      ||+|||++++++..+++.++.+..++++.+ ++++.++.+++.++|+++++++++++|.++|++.|+.+|+++.++.|..
T Consensus       234 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~  313 (323)
T PRK10888        234 GKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIG  313 (323)
T ss_pred             CCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999988888888988887653 5678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccC
Q 025823          238 FLAKIYKRQK  247 (247)
Q Consensus       238 l~~~~~~R~~  247 (247)
                      +++++++|.+
T Consensus       314 l~~~~~~R~~  323 (323)
T PRK10888        314 LAHIAVQRDR  323 (323)
T ss_pred             HHHHHHhCcC
Confidence            9999999964

>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] Back     alignment and domain information
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 Back     alignment and domain information
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1ubx_A367 Structure Of Farnesyl Pyrophosphate Synthetase Leng 7e-69
1fps_A348 Crystal Structure Of Recombinant Farnesyl Diphospha 9e-69
1ubv_A367 Structure Of Farnesyl Pyrophosphate Synthetase Leng 2e-68
3rye_A349 Human Fdps Synthase In Complex With A N-Methyl Pyri 9e-65
2f7m_F350 Crystal Structure Of Unliganded Human Fpps Length = 1e-64
2rah_A378 Human Fdps Synthase In Complex With Novel Inhibitor 1e-64
3b7l_A356 Human Farnesyl Diphosphate Synthase Complexed With 1e-64
4h5d_F375 Crystal Structure Of Human Fpps In Complex With Ys_ 1e-64
1yq7_A374 Human Farnesyl Diphosphate Synthase Complexed With 1e-64
1zw5_A355 X-Ray Structure Of Farnesyl Diphosphate Synthase Pr 1e-64
2qis_A374 Crystal Structure Of Human Farnesyl Pyrophosphate S 3e-64
3cp6_A376 Crystal Structure Of Human Farnesyl Diphosphate Syn 4e-64
3egt_A413 T. Brucei Farnesyl Diphosphate Synthase Complexed W 2e-48
2ewg_A390 T. Brucei Farnesyl Diphosphate Synthase Complexed W 2e-48
4e1e_A361 Crystal Structure Of Trypanosome Cruzi Farnesyl Dip 1e-46
4dzw_A362 Crystal Structure Of Trypanosome Cruzi Farnesyl Dip 1e-46
1yhk_A362 Trypanosoma Cruzi Farnesyl Diphosphate Synthase Len 2e-46
1yhm_A362 Structure Of The Complex Of Trypanosoma Cruzi Farne 2e-44
3cc9_A396 Crystal Structure Of Plasmodium Vivax Putative Poly 1e-37
3mav_A395 Crystal Structure Of Plasmodium Vivax Putative Farn 1e-37
2o1o_A368 Cryptosporidium Parvum Putative Polyprenyl Pyrophos 8e-15
1wmw_A330 Crystal Structure Of Geranulgeranyl Diphosphate Syn 8e-11
3lk5_A380 Crystal Structure Of Putative Geranylgeranyl Pyroph 1e-08
1rtr_A301 Crystal Structure Of S. Aureus Farnesyl Pyrophospha 1e-04
3mzv_A341 Crystal Structure Of A Decaprenyl Diphosphate Synth 2e-04
1wy0_A342 Crystal Structure Of Geranylgeranyl Pyrophosphate S 3e-04
3oyr_A345 Crystal Structure Of Polyprenyl Synthase From Caulo 5e-04
2for_A323 Crystal Structure Of The Shigella Flexneri Farnesyl 8e-04
1rqj_A299 Active Conformation Of Farnesyl Pyrophosphate Synth 8e-04
1rqi_A300 Active Conformation Of Farnesyl Pyrophosphate Synth 8e-04
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  256 bits (655), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 172/248 (69%), Gaps = 1/248 (0%)
Query: 1   MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
           MD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV LL+LF +  +
Sbjct: 120 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 179
Query: 61  QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKH 119
           QT  GQM+DLIT    + DLS +S   ++ IV+YKTA+YSFYLPVA A+ M G ++ ++H
Sbjct: 180 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 239
Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
              K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+    EQ++L
Sbjct: 240 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQL 299
Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
           + +NYG+ +P  VAKVKELY+ + +  AF +YE+ SY +L + IE H  +  + +     
Sbjct: 300 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 359
Query: 240 AKIYKRQK 247
            KIYKRQK
Sbjct: 360 QKIYKRQK 367
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate Synthase At 2.6 Angstroms Resolution Length = 348 Back     alignment and structure
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase Length = 367 Back     alignment and structure
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum Bisphosphonate Length = 349 Back     alignment and structure
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps Length = 350 Back     alignment and structure
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor Length = 378 Back     alignment and structure
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And Minodronate Length = 356 Back     alignment and structure
>pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With Ys0470 And Inorganic Pyrophosphate Length = 375 Back     alignment and structure
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Risedronate Length = 374 Back     alignment and structure
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein Length = 355 Back     alignment and structure
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase T210s Mutant Bound To Risedronate Length = 374 Back     alignment and structure
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase (T201a Mutant) Complexed With Mg And Biphosphonate Inhibitor Length = 376 Back     alignment and structure
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With Bisphosphonate Bph-722 Length = 413 Back     alignment and structure
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With Minodronate Length = 390 Back     alignment and structure
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl Diphosphate Synthase In Complex With [2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And Mg2+ Length = 361 Back     alignment and structure
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl Diphosphate Synthase In Complex With [2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid And Mg2+ Length = 362 Back     alignment and structure
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Length = 362 Back     alignment and structure
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl Disphosphate Synthase With Alendronate, Isopentenyl Diphosphate And Mg+2 Length = 362 Back     alignment and structure
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl Pyrophosphate Synthase In Complex With Geranylgeranyl Diphosphate Length = 396 Back     alignment and structure
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl Pyrophosphate Synthase (Pv092040) Length = 395 Back     alignment and structure
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate Synthase (Cgd4_2550) In Complex With Risedronate. Length = 368 Back     alignment and structure
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 Back     alignment and structure
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 Back     alignment and structure
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 Back     alignment and structure
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 Back     alignment and structure
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 Back     alignment and structure
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 Back     alignment and structure
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 Back     alignment and structure
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 Back     alignment and structure
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 1e-114
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 1e-112
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 1e-109
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 1e-108
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 1e-99
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 3e-95
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 1e-25
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 6e-23
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 4e-16
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 2e-15
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 7e-15
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 2e-11
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 9e-11
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 4e-08
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 5e-08
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 7e-08
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 8e-08
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 1e-07
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 2e-07
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 2e-07
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 2e-07
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 4e-07
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 8e-07
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 9e-07
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 9e-07
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 1e-06
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 1e-06
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 1e-06
3lsn_A304 Geranyltranstransferase; structural genomics, prot 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 3e-06
4f62_A317 Geranyltranstransferase; enzyme function initiativ 3e-06
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 5e-06
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 6e-06
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 7e-06
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 8e-06
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 8e-06
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 1e-05
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 3e-04
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 Back     alignment and structure
 Score =  330 bits (847), Expect = e-114
 Identities = 124/248 (50%), Positives = 171/248 (68%), Gaps = 1/248 (0%)

Query: 1   MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
           MD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV LL+LF +  +
Sbjct: 120 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 179

Query: 61  QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKH 119
           QT  GQM+DLIT    + DLS +S   ++ IV+YKTA+YSFYLPVA A+ M G ++ ++H
Sbjct: 180 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 239

Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
              K IL++MG YFQ+QDD+LDCFG P + G VGTDI+D KCSWLVV+ L+    EQ++L
Sbjct: 240 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQL 299

Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
           + +NYG+ +P  VAKVKELY+ + +  AF +YE+ SY +L + IE H  +  + +     
Sbjct: 300 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 359

Query: 240 AKIYKRQK 247
            KIYKRQK
Sbjct: 360 QKIYKRQK 367
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 100.0
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 100.0
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 100.0
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 100.0
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 100.0
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 100.0
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 100.0
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 100.0
3mav_A395 Farnesyl pyrophosphate synthase; PV092040, structu 100.0
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 100.0
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 100.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 100.0
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 100.0
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 100.0
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 100.0
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 100.0
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 100.0
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 100.0
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 100.0
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 100.0
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 100.0
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 100.0
4f62_A317 Geranyltranstransferase; enzyme function initiativ 100.0
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 100.0
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
3lsn_A304 Geranyltranstransferase; structural genomics, prot 100.0
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 100.0
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 100.0
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 100.0
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 100.0
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 100.0
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 100.0
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 100.0
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 100.0
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 100.0
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 100.0
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 99.97
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 99.97
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 95.47
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 95.36
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 95.27
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 93.81
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 93.25
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 90.64
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 90.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 88.99
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 86.28
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
Probab=100.00  E-value=5.3e-57  Score=397.29  Aligned_cols=233  Identities=20%  Similarity=0.287  Sum_probs=190.3

Q ss_pred             CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823            1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD   79 (247)
Q Consensus         1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d   79 (247)
                      ||+|++|||+||+|++||++ +|++||++++.  +|+++++.     ...++++++++++..++.||.+|+.+..+..  
T Consensus       108 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~--a~~~l~~~-----~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~--  178 (345)
T 3oyr_A          108 VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFAR--AFELMVET-----NSMKALEILARASRVIAEGEVLQLMRSHDLN--  178 (345)
T ss_dssp             C---------CCCSCCTTHHHHHHHHHHHHHH--HHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHHHHHTSSCSS--
T ss_pred             cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHH--HHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--
Confidence            79999999999999999998 89999999965  78888864     2368899999999999999999999876543  


Q ss_pred             CCCCCHHHHHHHHHhchhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCC-ccchHhh
Q 025823           80 LSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIED  158 (247)
Q Consensus        80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK-~~~Dl~~  158 (247)
                         +++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++|+++.+|| .|+||++
T Consensus       179 ---~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~e  254 (345)
T 3oyr_A          179 ---LSQAVYLEIIQAKTAEL-FAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFRE  254 (345)
T ss_dssp             ---CCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred             ---CCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhc
Confidence               69999999999999999 999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CcccHHHHHHHhhcCHHHHHHHHHhhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 025823          159 YKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLK  236 (247)
Q Consensus       159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~  236 (247)
                      ||+|||++++++..++++++.+.++++++  +++++++++++++++|+++++++.++++.++|++.|+.+|+++.++.|.
T Consensus       255 gK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~  334 (345)
T 3oyr_A          255 GKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALE  334 (345)
T ss_dssp             --CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHH
T ss_pred             CchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999988999999998865  5678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 025823          237 SFLAKIYKRQ  246 (247)
Q Consensus       237 ~l~~~~~~R~  246 (247)
                      .|++++++|.
T Consensus       335 ~la~~~~~R~  344 (345)
T 3oyr_A          335 ELADFAVSRR  344 (345)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhcc
Confidence            9999999996
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1fpsa_348 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 4e-34
d1rqja_299 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 2e-09
d1v4ea_280 a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th 1e-06
d2q80a1291 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s 2e-05
d1rtra_290 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 1e-04
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  123 bits (309), Expect = 4e-34
 Identities = 122/248 (49%), Positives = 170/248 (68%), Gaps = 1/248 (0%)

Query: 1   MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEF 60
           MD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV LL+LF +  +
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 160

Query: 61  QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPV-ACALLMAGENLDKH 119
           QT  GQM+DLIT    + DLS +S   ++ IV+YKTA+YSFYLPV A   ++  ++ ++H
Sbjct: 161 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 220

Query: 120 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKL 179
              K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+    EQ++L
Sbjct: 221 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQL 280

Query: 180 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 239
           + +NYG+ +P  VAKVKELY+ + +  AF +YE+ SY +L + IE H  +  + +     
Sbjct: 281 LEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLA 340

Query: 240 AKIYKRQK 247
            KIYKRQK
Sbjct: 341 QKIYKRQK 348
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 100.0
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 100.0
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 96.52
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.1e-53  Score=376.54  Aligned_cols=246  Identities=48%  Similarity=0.850  Sum_probs=221.7

Q ss_pred             CCCCCCccCchhhccccchh-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHhhHHHhhhcccccCCcc
Q 025823            1 MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD   79 (247)
Q Consensus         1 iD~~~~RRG~pt~~~~~g~~-ai~~gd~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~d   79 (247)
                      ||+|++|||+||+|++||++ ++++||+++..+ ++.++.....+.+...++++.+++++..++.||.+|+.+......+
T Consensus       101 ~D~~~~RRG~pt~~~~~g~~~ail~gd~ll~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~  179 (348)
T d1fpsa_         101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESS-VYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVD  179 (348)
T ss_dssp             TTTCCEETTEECTTTSTTTTTTHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCC
T ss_pred             ccCCccccccchhhhhccccHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHhhhhhhhHHHHHHHHHHhhhcccccc
Confidence            79999999999999999998 799999998653 4667665444445567899999999999999999999887765555


Q ss_pred             CCCCCHHHHHHHHHhchhhhhhHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCccchHhh
Q 025823           80 LSKYSLPLHRRIVQYKTAYYSFYLPVACAL-LMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIED  158 (247)
Q Consensus        80 ~~~~s~~~y~~i~~~KTa~ltf~~~~~~ga-~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~Dl~~  158 (247)
                      ...+++++|++|+.+|||+|||..|+.+++ ++++.+++..+.++.||.++|+||||+||++|++|+++.+||+|+||++
T Consensus       180 ~~~~t~~~Y~~~i~~KTa~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~e  259 (348)
T d1fpsa_         180 LSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQD  259 (348)
T ss_dssp             SSSCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSSCSCCCSS
T ss_pred             ccccCHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccccchhhccccccccchHHHHHHHHhhhhcchhccCcccccccC
Confidence            555799999999999999987666665555 5566788899999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHhhcCHHHHHHHHHhhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 025823          159 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSF  238 (247)
Q Consensus       159 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~~~~A~~~l~~lp~~~~~~~L~~l  238 (247)
                      ||+|||++++++.+++++++.|..++++.+++++.+++++++.+|++++++++++.+.++|.+.++.+|+++.++.|..|
T Consensus       260 gK~Tlpii~al~~~~~~~r~~l~~~~~~~~~e~i~~v~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l  339 (348)
T d1fpsa_         260 NKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGL  339 (348)
T ss_dssp             CCCCHHHHHHHHTCCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCSSSCTHHHHHH
T ss_pred             CccHHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999999999998899999999


Q ss_pred             HHHHHhccC
Q 025823          239 LAKIYKRQK  247 (247)
Q Consensus       239 ~~~~~~R~~  247 (247)
                      ++++++|+|
T Consensus       340 ~~~i~~R~k  348 (348)
T d1fpsa_         340 AQKIYKRQK  348 (348)
T ss_dssp             HHHHSCCCC
T ss_pred             HHHHHhCCC
Confidence            999999986
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure