Citrus Sinensis ID: 025848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MFFFYLRELISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Secondary Structure (PSIPRED)
cccEEcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccHHHHccccHHHcccccccccccccccccccHHHHHHcccccccccccHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
MFFFYLRELIsgnmskepkdcrETYSQIKRRRMLQFDTqvvdsslcsdempspflksnergesveevlpeasqwttefsgvsasscdgtdqslEGWIseclndpemnfstdellrdfsgasdiqidisefsnsppayddanilqqhctktphnvvfrgrkslirtptklassvaypfafikpcgvhgditlkdinqrihspastlrqntedpsaypksafsgkpvvgktkirteggkgsITIMRTKG
Flexible Loop (DISEMBL)
MFFFYLRelisgnmskepkdcRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSpastlrqntedpsaypksafsgkpvvgktkirteggkgsitimrtkg
Low Complexity Region (SEG)
MFFFYLRELISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered region (IsUnstruct)
*FFFYLRELI**********************************************************************************LEGWISECLNDPEMNFSTDELLRDFSGASDIQIDIS*******AYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQ***************************************************
Disordered Region (DISOPRED)
MFFFYLRELISGNM******************MLQFD**********************RGESVEEVLPEASQ********************EGWISECLND*********************************************************************VAYPFAFIKPCGVHGDITLKDINQR************************GKPVVGKTKIRTEGGKGSITIMRTK*
Disordered Region (DISEMBL)
MFFFYLRELISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQW**************TDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS**************SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered Region (DISPRO)
MFFFYLRELI*****************IKR***LQFD**************************VEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFST**L******************************************************KLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS*******DP******AFSGKPVVGKTKIRTEGGKGSITIMRTKG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFFFYLRELISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q6NLW5	300	Protein XRI1 OS=Arabidops	no	no	0.890	0.733	0.539	7e-57

>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2

 Score =  220 bits (561), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 6/226 (2%)

Query: 23  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFS-GV 81
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 80  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query: 82  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 141
           SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct: 139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 195

Query: 142 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 201
           + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 196 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 254

Query: 202 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
            +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 255 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
255560125	293	conserved hypothetical protein [Ricinus	0.947	0.798	0.632	2e-81
224069822	280	predicted protein [Populus trichocarpa]	0.947	0.835	0.619	6e-76
449453276	304	PREDICTED: protein XRI1-like [Cucumis sa	0.947	0.769	0.576	4e-68
356559041	309	PREDICTED: protein XRI1-like [Glycine ma	0.939	0.750	0.560	6e-66
356527366	302	PREDICTED: protein XRI1-like [Glycine ma	0.919	0.751	0.553	4e-65
147771043	320	hypothetical protein VITISV_010925 [Viti	0.850	0.656	0.560	4e-65
363808040	298	uncharacterized protein LOC100791247 [Gl	0.927	0.768	0.572	8e-65
356506666	327	PREDICTED: LOW QUALITY PROTEIN: protein	0.919	0.694	0.570	3e-64
297792063	266	hypothetical protein ARALYDRAFT_494937 [	0.890	0.827	0.553	1e-56
79532088	266	protein XRI1 [Arabidopsis thaliana] gi|4	0.890	0.827	0.539	1e-55

>gi|255560125|ref|XP_002521080.1| conserved hypothetical protein [Ricinus communis] gi|223539649|gb|EEF41231.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/250 (63%), Positives = 190/250 (76%), Gaps = 16/250 (6%)

Query: 11  SGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSN-----------E 59
           S NM KEP++ RET SQ+KRRRMLQFDTQ  DS LC +E+ S FL+SN           E
Sbjct: 47  SDNMHKEPEEHRETSSQLKRRRMLQFDTQAADSPLCHEEISSVFLQSNATVNVFVTYVQE 106

Query: 60  RGESVEEVLPEASQWTTEFSG-VSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFS 118
           R +S+EEVLP+AS W   FS  VSASS +  D S EGW+++C ND EM  S +++  +F 
Sbjct: 107 REDSLEEVLPQASDWVPGFSADVSASSYEALDHSSEGWLADCFNDTEMGLSPNDM--NFP 164

Query: 119 GASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFA 178
           GA D+QIDISEF N P   ++A+ +Q+  T+TP NV+F+G+KS IRTPTKLASSV YPFA
Sbjct: 165 GACDVQIDISEFCNGPLG-NEAHAVQKRITRTPRNVIFKGKKSFIRTPTKLASSVVYPFA 223

Query: 179 FIKPCGVHGDITLKDINQRIHS-PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGK 237
           FIKPCG HGD+TLKDINQ+I + P S L+QN EDP+AYP SAFSGKPVVGKTKIRTEGGK
Sbjct: 224 FIKPCGFHGDVTLKDINQKIRTPPPSKLKQNEEDPAAYPTSAFSGKPVVGKTKIRTEGGK 283

Query: 238 GSITIMRTKG 247
           GSITIMRTKG
Sbjct: 284 GSITIMRTKG 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069822|ref|XP_002303048.1| predicted protein [Populus trichocarpa] gi|222844774|gb|EEE82321.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 148/239 (61%), Positives = 184/239 (76%), Gaps = 5/239 (2%)

Query: 10  ISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLP 69
           +S NM+KEP++ RET  Q KRRR LQFDT + DS  C +++ S FLKSNE  ES+EEV P
Sbjct: 46  MSDNMNKEPEERRETCFQFKRRR-LQFDTHLADSPFCDEDLTSVFLKSNETEESLEEVFP 104

Query: 70  EASQWTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISE 129
           +ASQW + +  +SAS  +G D S + WI++C ND  M+FS +++  +F GASDIQIDIS+
Sbjct: 105 QASQWDSGYQDMSASCYNGLDPSSDPWIADCFNDSGMHFSPNDM--NFPGASDIQIDISD 162

Query: 130 FSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDI 189
           F N PP ++ A+ +Q+   +TP NVVF+G KS I+TPTKLA+SVAYPFAFIKPCGVHGD+
Sbjct: 163 FCNDPPEFE-ASTVQKCVPRTPRNVVFKGTKSFIQTPTKLATSVAYPFAFIKPCGVHGDV 221

Query: 190 TLKDINQRIHS-PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
           TL +INQRI + P S  +Q  EDP  YP SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Sbjct: 222 TLNEINQRIRTPPPSKSKQKDEDPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453276|ref|XP_004144384.1| PREDICTED: protein XRI1-like [Cucumis sativus] gi|449529551|ref|XP_004171763.1| PREDICTED: protein XRI1-like [Cucumis sativus]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/243 (57%), Positives = 180/243 (74%), Gaps = 9/243 (3%)

Query: 11  SGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPE 70
           S + +K+ ++ RET+SQ KRRRMLQF  Q +++S+C +++ S FLKS+ +  S    L E
Sbjct: 65  SDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSICREDLSSRFLKSHNKVVSSPAALAE 124

Query: 71  ASQWTTEFSGVSAS---SC-DGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQID 126
            S    E SG++ +   SC +  D S EGWI+ECLND +M+ S ++L   F+G SDIQID
Sbjct: 125 VSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL--SFAGTSDIQID 182

Query: 127 ISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVH 186
           +SEF +  P +  +N++Q H T+ P N++F+GRKS IRTPTKLASSVAYPFAFIKPCG H
Sbjct: 183 VSEFCDGAPEFK-SNVVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAYPFAFIKPCGFH 241

Query: 187 GDITLKDINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRTEGGKGSITIMR 244
           GD+TLKDINQRI + P S L+   EDPS +YP SAFSGKPVVGKTKI TEGGKGSITIMR
Sbjct: 242 GDVTLKDINQRIRTPPPSKLKHQPEDPSESYPTSAFSGKPVVGKTKIHTEGGKGSITIMR 301

Query: 245 TKG 247
           T+G
Sbjct: 302 TRG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559041|ref|XP_003547810.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 135/241 (56%), Positives = 172/241 (71%), Gaps = 9/241 (3%)

Query: 13  NMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEAS 72
           NM KE ++CRETYSQ KRRRMLQF++Q  D SL ++ M   +LK N + + V+E+ PE S
Sbjct: 72  NMQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLK-NGKEDPVKEIFPEVS 130

Query: 73  QWTT---EFSGVSASSCDGTD-QSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDIS 128
           QW +   +F+  +AS+ D  D +S E W+++  ND EM+ S +EL   FS A D+QID +
Sbjct: 131 QWVSGASDFTLGNASASDYVDLESTETWLADYFNDAEMDISPEEL--KFSVADDVQIDGT 188

Query: 129 EFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGD 188
           E S   P+ +   + Q H  +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD
Sbjct: 189 EVSAIKPSREQNVVQQTHIPRTTRNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGD 248

Query: 189 ITLKDINQRIHS--PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTK 246
           +TLK+INQ I +  P  + + N +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTK
Sbjct: 249 VTLKEINQHIQTPPPLKSKQSNDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTK 308

Query: 247 G 247
           G
Sbjct: 309 G 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527366|ref|XP_003532282.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/235 (55%), Positives = 168/235 (71%), Gaps = 8/235 (3%)

Query: 16  KEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWT 75
           KE   C ++  QIKRRRMLQF++Q     L +++M S +LK  E  E  E+V PE SQW 
Sbjct: 73  KESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLKGKE--EPKEDVFPEFSQWV 130

Query: 76  TEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPP 135
           +   G +++S     +S EGW+++C  D EM    D+L  +FSGA ++Q+D+++  N PP
Sbjct: 131 SGTPGSASASNYEDLESAEGWLADCFKDAEMQLCPDDL--NFSGADEVQVDVADLGNFPP 188

Query: 136 AYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDIN 195
           A +  N++Q   T+TP N++F+G KS I TPTKLA+SVAYPFAFIKPCG HGD+TLK+IN
Sbjct: 189 ACEQ-NVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEIN 247

Query: 196 QRIHSPASTLR---QNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
           QRI SP   L+   Q+ EDPSAYPKSAFSGKPVVGKT+I  EGGKGSITIMRTKG
Sbjct: 248 QRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771043|emb|CAN65243.1| hypothetical protein VITISV_010925 [Vitis vinifera]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/248 (56%), Positives = 168/248 (67%), Gaps = 38/248 (15%)

Query: 3   FFYLRELISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGE 62
              L+E I GNM+KE  +C+ET SQ                               ER  
Sbjct: 108 JLQLKEWIPGNMNKE-TECKETCSQ-------------------------------ERES 135

Query: 63  SVEEVLPEASQWTTEF-SGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGAS 121
            VEE  P+ASQW + F   +S S  +G D+S EGW++EC ND EM+FS D++  + S  S
Sbjct: 136 FVEETQPDASQWVSGFPENMSVSGYEGLDKSSEGWLAECFNDAEMHFSPDDM--NLSEIS 193

Query: 122 DIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIK 181
           D+QID++EF N P  Y+ AN +Q+  T+TP NV+F+GRKS +RTPTKLASSVAYPFAFIK
Sbjct: 194 DVQIDVTEFYNIPTEYE-ANTVQERATRTPQNVIFKGRKSYMRTPTKLASSVAYPFAFIK 252

Query: 182 PCGVHGDITLKDINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRTEGGKGS 239
           PCGVHGD+TLKDINQRI + P S  RQ+ EDPS +YP SAFSGKPVVGKTKIRTEGGKGS
Sbjct: 253 PCGVHGDVTLKDINQRIRTPPPSKSRQSNEDPSVSYPTSAFSGKPVVGKTKIRTEGGKGS 312

Query: 240 ITIMRTKG 247
           ITIMRTKG
Sbjct: 313 ITIMRTKG 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808040|ref|NP_001242722.1| uncharacterized protein LOC100791247 [Glycine max] gi|255647285|gb|ACU24109.1| unknown [Glycine max]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 167/236 (70%), Gaps = 7/236 (2%)

Query: 14  MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 73
           + KE   C ++  QIKRRRMLQF+TQ     L ++ M S +LK  E  ES E+V PE S 
Sbjct: 68  LQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLKGKE--ESNEDVFPELSH 125

Query: 74  WTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNS 133
           W +  SG +++S     +S EGW+++C  D EM    D+L  +FSGA  +QID+++  N 
Sbjct: 126 WVSGASGSASASNYEDLESAEGWLADCFKDAEMQLCPDDL--NFSGADAVQIDVADLCNF 183

Query: 134 PPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKD 193
           PPA +  N+LQ H T+TP N+VF+G KS I TPTKLA+SVAYPF FIKPCG HGD+TLK+
Sbjct: 184 PPACE-QNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLKE 242

Query: 194 INQRIHSPASTLR--QNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
           INQRI SP   L+  Q+ EDPSAYPKSAFSGKPVVGKTKI  EGGKGSITIM TKG
Sbjct: 243 INQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSITIMGTKG 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506666|ref|XP_003522097.1| PREDICTED: LOW QUALITY PROTEIN: protein XRI1-like [Glycine max]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/235 (57%), Positives = 172/235 (73%), Gaps = 8/235 (3%)

Query: 17  EPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTT 76
           EP++CRETYSQ KRRRMLQF++Q  D SL ++EM   +LK N + + V+E+ PE SQW +
Sbjct: 97  EPEECRETYSQXKRRRMLQFNSQDSDQSLSNEEMSLSYLK-NGKEDPVKEIFPEVSQWVS 155

Query: 77  EFSGVSASSCDGTD-QSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDI-SEFSNSP 134
             SG +AS+ D  D +S E W+++  ND  M+FS +EL  +FS A  +QID  +E S   
Sbjct: 156 GASG-NASASDYVDLESTETWLADYFNDAVMDFSPEEL--NFSVADGVQIDDGTEVSAIT 212

Query: 135 PAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDI 194
           P+++   + Q H  +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD+TLK+I
Sbjct: 213 PSHEQNVVQQTHVPRTTCNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVTLKEI 272

Query: 195 NQRIHSPASTLRQNT--EDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
           NQRI +P+ +    +  +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 273 NQRIQTPSPSKSNQSIDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792063|ref|XP_002863916.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata] gi|297309751|gb|EFH40175.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 157/226 (69%), Gaps = 6/226 (2%)

Query: 23  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFS-GV 81
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R E+ +E+LPE SQ    FS   
Sbjct: 46  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDETFDELLPEGSQLIEGFSEDA 104

Query: 82  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 141
           SASS +G D   E W +ECLND E     D+L   F G+ D+Q+DISE+ N PP  +   
Sbjct: 105 SASSFEGLDLYAEEWYAECLNDAETPMLPDDL--SF-GSPDVQVDISEYLNVPPETETRE 161

Query: 142 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 201
             Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 162 A-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 220

Query: 202 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
            +  +Q+ E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 221 PAKPKQHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79532088|ref|NP_199683.2| protein XRI1 [Arabidopsis thaliana] gi|45773794|gb|AAS76701.1| At5g48720 [Arabidopsis thaliana] gi|58531328|gb|AAW78586.1| At5g48720 [Arabidopsis thaliana] gi|332008332|gb|AED95715.1| protein XRI1 [Arabidopsis thaliana]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 6/226 (2%)

Query: 23  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFS-GV 81
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 46  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 104

Query: 82  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 141
           SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct: 105 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 161

Query: 142 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 201
           + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 162 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 220

Query: 202 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
            +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 221 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2156519	300	XRI1 "AT5G48720" [Arabidopsis	0.890	0.733	0.539	1.1e-55
TAIR|locus:2041110	213	AT2G01990 "AT2G01990" [Arabido	0.587	0.680	0.365	4.4e-13
TAIR|locus:2204538	226	AT1G14630 "AT1G14630" [Arabido	0.299	0.327	0.506	1e-08

TAIR|locus:2156519 XRI1 "AT5G48720" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 122/226 (53%), Positives = 158/226 (69%)

Query:    23 ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFS-GV 81
             ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct:    80 ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query:    82 SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 141
             SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct:   139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 195

Query:   142 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 201
             + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct:   196 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 254

Query:   202 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
              +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct:   255 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010165 "response to X-ray" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2041110 AT2G01990 "AT2G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 64/175 (36%), Positives = 86/175 (49%)

Query:    90 DQSLEGW-ISE---CLND----PEMNFSTDELLRDFSGASDIQIDISEFSNSPP---AYD 138
             D S   W + E   CLN     P +N  T E +   SG S  Q  IS    SP    +YD
Sbjct:    52 DDSQNDWGLHESYSCLNSQFVTPHVN--TGERI---SGVSYCQETISNVYESPDTSVSYD 106

Query:   139 DANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRI 198
                + ++  T+   +      K LI   TKL     YPF  +KP G   D+TL DIN+RI
Sbjct:   107 KIYVREKSPTEPSSSNCGNKNKRLI---TKLV----YPFGLVKPGGRENDVTLNDINERI 159

Query:   199 -HSPASTLRQNTEDPSAYP-----KSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
               +P+  +R    D ++ P         SGK VV  TKI+T+G +G+ITI+RTKG
Sbjct:   160 LMAPSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRTKG 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204538 AT1G14630 "AT1G14630" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 41/81 (50%), Positives = 49/81 (60%)

Query:   173 VAYPFAFIKPCGVHGDITLKDINQRIHSP-ASTLRQNTEDPSAYP-KSA----FSGKPVV 226
             V YPF  +KP G   DITL DIN+RI  P A  +R    D +  P  SA     SGK VV
Sbjct:   147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query:   227 GKTKIRTEGGKGSITIMRTKG 247
               TKI+T G +G+ITI+RTKG
Sbjct:   207 AFTKIQTLG-RGTITIIRTKG 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      247       247   0.00078  114 3  11 23  0.48    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  194 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.41u 0.10s 24.51t   Elapsed:  00:00:03
  Total cpu time:  24.41u 0.10s 24.51t   Elapsed:  00:00:03
  Start:  Sat May 11 05:10:18 2013   End:  Sat May 11 05:10:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011760001 SubName- Full=Chromosome undetermined scaffold_336, whole genome shotgun sequence; (313 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00