Citrus Sinensis ID: 025889

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MLRLSSRFIRTKVSPVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL
Secondary Structure (PSIPRED)
cccHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHccccHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHccccEEEcccccccEEEEEEEEccEEEEEEHHHHHHcccccccEEEEEEEHHHcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcHHHHHHHHHHHcHHcccccccccccccHHHcHHHHHHHHHccccccccccccccccccccHHHHccHHHHHcccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHccEEEEEccccccEEEEEEEEcccEEEEEcHHHHHHcccccccEEEEEEcHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlrlssrfirtkvspvkdlftktssscsfttftvnptiqkqrekaipcdflkwsslglyrtsrfatgftplqpkpldsiIDIERAKDKSAEDLATIwddyhlgrghICASLKTQLYRLLEhrsadcryfviplwkgsgyaTMFVQVQLPHILVTGLEdykargtqaapyftasfytdfaeskdlvliRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL
Flexible Loop (DISEMBL)
mlrlssrfirtkvspvkdlftktssscsfttftvnptiqkqrekaipcdfLKWSSLGLYRTSRfatgftplqpkplDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNkearnfefkdvlralsmpll
Low Complexity Region (SEG)
MLRLSSRFIRTKVSPVKDLftktssscsfttftVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL
Disordered region (IsUnstruct)
************V*PVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLR*******
Disordered Region (DISOPRED)
****SSR*********************************************************************DSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPL*
Disordered Region (DISEMBL)
MLRLSSRFIRTKVSPVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL
Disordered Region (DISPRO)
*****SRFIRTK*SPVKDLFTKTSSSC****************************************FTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSM***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRLSSRFIRTKVSPVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q5TC12	328	ATP synthase mitochondria	yes	no	0.857	0.643	0.278	5e-14
Q811I0	324	ATP synthase mitochondria	yes	no	0.857	0.651	0.273	2e-13
Q66JD1	303	ATP synthase mitochondria	yes	no	0.784	0.636	0.285	5e-12
P87127	286	Protein atp11, mitochondr	yes	no	0.674	0.580	0.281	1e-11
Q1L987	302	ATP synthase mitochondria	yes	no	0.695	0.566	0.275	2e-09
P32453	318	Protein ATP11, mitochondr	yes	no	0.589	0.455	0.242	7e-08

>sp|Q5TC12|ATPF1_HUMAN ATP synthase mitochondrial F1 complex assembly factor 1 OS=Homo sapiens GN=ATPAF1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 30  TTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKS 89
           + F   P    ++   I C   K  +LG    +R   GFT  + K L SI +IE  K+K+
Sbjct: 103 SEFRKQPVGHSRQGDFIKCVEQKTDALGKQSVNR---GFT--KDKTLSSIFNIEMVKEKT 157

Query: 90  AEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLP 149
           AE++  IW  Y   +  + A +  + + L+ +R+  C  F+  L +  GY     Q    
Sbjct: 158 AEEIKQIWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGT 217

Query: 150 HILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETI 209
            +  T L + + RG  AA       Y +  E K +VL+  ++  T  L  +EA+ +   +
Sbjct: 218 ELHFTALINIQTRGEAAASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVAEAQCIANQV 276

Query: 210 QSFYLNDVR--FKLVERFNKEARNFEFKDVLRALSMPLL 246
           Q FY  D +  + LVE FN     F++  V+  L    L
Sbjct: 277 QLFYATDRKETYGLVETFNLRPNEFKYMSVIAELEQSGL 315

May play an essential role for the assembly of the mitochondrial F1-F0 complex.
Homo sapiens (taxid: 9606)

>sp|Q811I0|ATPF1_MOUSE ATP synthase mitochondrial F1 complex assembly factor 1 OS=Mus musculus GN=Atpaf1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 8/219 (3%)

Query: 30  TTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKS 89
           + F   P    ++   I C   K  +LG    S+   GFT  + K L S+ ++E  KDK+
Sbjct: 99  SEFRKQPVGHSKQSDFIKCMEQKTDALGKQPVSK---GFT--KDKTLSSVFNVEMVKDKT 153

Query: 90  AEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLP 149
           AE++  IW  Y   +  + A +  + + L+ +R+  C  F+  L +  GY     Q    
Sbjct: 154 AEEIKQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGT 213

Query: 150 HILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETI 209
            +  T L + + RG  AA       Y +  E K +VL+  ++  T  L   EA+ +   +
Sbjct: 214 ELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVVEAQCIANQV 272

Query: 210 QSFYLNDVR--FKLVERFNKEARNFEFKDVLRALSMPLL 246
           Q FY  D +  + LVE FN     F++  V+  L    L
Sbjct: 273 QLFYATDRKEIYGLVETFNFRPNEFKYMSVIAELEQSGL 311

May play an essential role for the assembly of the mitochondrial F1-F0 complex.

Mus musculus (taxid: 10090)

>sp|Q66JD1|ATPF1_XENTR ATP synthase mitochondrial F1 complex assembly factor 1 OS=Xenopus tropicalis GN=atpaf1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 17/210 (8%)

Query: 51  LKWSSLGLYRTSRFAT------------GFTPLQPKPLDSIIDIERAKDKSAEDLATIWD 98
           LK   LG  + + FA             GF+  + K LDSI++IE  KDK A+++  IW 
Sbjct: 80  LKQQPLGYSKQAEFAKTVEEKVGTASGKGFS--KNKTLDSILNIELIKDKDADEIREIWK 137

Query: 99  DYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLED 158
            Y   R  + A +  + + L+  R+  C  F+  L +  GY     Q     +  T L +
Sbjct: 138 QYFSLRNSVYAVIPGESFELIWRRAKTCPSFLYALPRKEGYEFFVGQWSGSELHFTALIN 197

Query: 159 YKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR 218
            +  G  A        Y +F + K +VL+  +I  T  L   +A+ L   +Q FY +D  
Sbjct: 198 IQTAGDAAPSQLILYHYPEFQKDKGIVLMTSEID-TKFLNVQDAQCLANQVQLFYGSDGA 256

Query: 219 --FKLVERFNKEARNFEFKDVLRALSMPLL 246
             F LVE+FN ++  F++  V+  L    L
Sbjct: 257 ETFGLVEKFNHKSDEFKYMAVVSFLEQSGL 286

May play an essential role for the assembly of the mitochondrial F1-F0 complex.

Xenopus tropicalis (taxid: 8364)

>sp|P87127|ATP11_SCHPO Protein atp11, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp11 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 15/181 (8%)

Query: 76  LDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWK 135
           L+  ID+E+ K+     +  +W   ++G   + A +  ++Y  +  R+    YFV+PL +
Sbjct: 106 LNRYIDVEKIKELPTSTIEKLWRARNIGDDILSACIPKEIYEKMLSRARMYPYFVLPLPR 165

Query: 136 G-SGYATMFVQVQLP-----HILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRG 189
           G  G  + F+Q   P     H+LVT L +YK +G+ AAP+     + D    K + L+R 
Sbjct: 166 GDKGIESHFLQWNFPNKNEAHLLVTSLLEYKLKGSYAAPHTIMLHFADLLNLKGITLMRC 225

Query: 190 DIVFTSKLTDSEAEWLLETIQSFY-------LNDVRFKLVERFNKEARNFEFKDVLRALS 242
                 KL+ ++ + L+  IQ FY       L   R  L+  F+K A +F+   V   + 
Sbjct: 226 QFE-PKKLSANDVQLLVLAIQKFYNASENTPLGKERLALLAAFSKGA-DFDLHKVATHMD 283

Query: 243 M 243
           M
Sbjct: 284 M 284

Essential for the assembly of the mitochondrial F1-F0 complex. May interact with the alpha and/or beta subunits of F1-ATPase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q1L987|ATPF1_DANRE ATP synthase mitochondrial F1 complex assembly factor 1 OS=Danio rerio GN=atpaf1 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 67  GFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADC 126
           GFT  + K L SI+++E  ++KS  ++  +W  Y   +  I A + +  + ++  R+  C
Sbjct: 117 GFT--KDKTLGSILNLEMVQEKSGAEITELWMQYFSKKDTISAVIPSSTFDVIFGRAKSC 174

Query: 127 RYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVL 186
             F+  L +  GY     Q     +  T L + +  G  A        YTD  + KD+VL
Sbjct: 175 PTFLYALPQNEGYEFFVGQWAGNELHFTSLINVQTMGENAPSQLILYHYTDLQKDKDIVL 234

Query: 187 IRGDIVFTSK-LTDSEAEWLLETIQSFYLND--VRFKLVERFNKEARNFEFKDVLRAL 241
           +  ++   SK +T  +A+ L   +Q FY +     F+LVE FN +   F+   V+  L
Sbjct: 235 MTAEM--DSKFVTVHQAQCLANQVQLFYGSQRLETFRLVETFNHKPEEFKHMAVIAEL 290

May play an essential role for the assembly of the mitochondrial F1-F0 complex.

Danio rerio (taxid: 7955)

>sp|P32453|ATP11_YEAST Protein ATP11, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP11 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 69  TPLQP-------KPLDSIIDIERAKDKSAEDLATIWDDYHLGRGH-ICASLKTQLYRLLE 120
           +PL P       K LDS +D+ + KD S +++  +W      + + +CA +   +Y  + 
Sbjct: 109 SPLDPSAPKVPFKTLDSFLDVGKLKDLSKQEVEFLWRARWAQKDNTLCAVIPVSVYDKMM 168

Query: 121 HRSADCRYFVIPLWKG-----------SGYATMFVQ-----VQLPHILVTGLEDYKARGT 164
             + +   FV+PL +             G    ++Q      Q  H ++T L +YK    
Sbjct: 169 ANARNNPIFVLPLPRQVQSEDAKPNEEQGMELHYIQWQFVGPQTTHCMMTSLAEYKLHQE 228

Query: 165 QAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFY 213
            A P+ T  F++D  + K +V + G +   + +   +A+ LL  +Q FY
Sbjct: 229 FARPHTTLQFHSDLVKDKGIVFMNGHVEPDTNVNVQDAQLLLLNVQRFY 277

Essential for the assembly of the mitochondrial F1-F0 complex. May interact with the alpha and/or beta subunits of F1-ATPase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
225443535	245	PREDICTED: ATP synthase mitochondrial F1	0.995	1.0	0.719	1e-101
224079139	244	predicted protein [Populus trichocarpa]	0.991	1.0	0.715	1e-101
449434306	248	PREDICTED: uncharacterized protein LOC10	0.967	0.959	0.720	1e-100
356542961	251	PREDICTED: ATP synthase mitochondrial F1	0.890	0.872	0.694	2e-91
18403431	248	ATP synthase mitochondrial F1 complex as	0.841	0.834	0.690	1e-85
21592442	248	unknown [Arabidopsis thaliana]	0.841	0.834	0.685	7e-85
357144174	240	PREDICTED: ATP synthase mitochondrial F1	0.857	0.879	0.677	4e-80
223948531	249	unknown [Zea mays] gi|413936424|gb|AFW70	0.890	0.879	0.642	5e-80
356517502	237	PREDICTED: uncharacterized protein LOC10	0.890	0.924	0.611	1e-79
226532321	249	ATP11 protein [Zea mays] gi|195639518|gb	0.890	0.879	0.638	1e-79

>gi|225443535|ref|XP_002272818.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1 [Vitis vinifera] gi|297740461|emb|CBI30643.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 205/246 (83%), Gaps = 1/246 (0%)

Query: 1   MLRLSSRFIRTKVSPVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYR 60
           M R+S R  R   S V  L  + SS+ SF TF+V P  +K  ++ IP DF KW SLG  R
Sbjct: 1   MQRVSGRVSRIITSSVASLLVRASSTQSFGTFSVKPNFRKL-QQGIPGDFPKWGSLGFCR 59

Query: 61  TSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLE 120
           T  FA+GFTPLQPKPL SI+DIER KD+S+ED+A+IWDDYHLGRGHI AS+K +LY LLE
Sbjct: 60  TLGFASGFTPLQPKPLGSILDIERVKDRSSEDIASIWDDYHLGRGHIAASMKPKLYHLLE 119

Query: 121 HRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAE 180
           HR+A+CR+FVIPLW+GSGYATMF QVQ+ H++ TGLEDYKARGTQAAPYFT +FYTDFAE
Sbjct: 120 HRAANCRHFVIPLWRGSGYATMFAQVQMQHMIFTGLEDYKARGTQAAPYFTVTFYTDFAE 179

Query: 181 SKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRA 240
           SKDLVLIRGDIVFTSKL+DSEA+WLLET QSFYLNDVR+KLVERFNKE R FEFKDVL+A
Sbjct: 180 SKDLVLIRGDIVFTSKLSDSEAKWLLETAQSFYLNDVRYKLVERFNKETREFEFKDVLQA 239

Query: 241 LSMPLL 246
           L MP+L
Sbjct: 240 LDMPVL 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079139|ref|XP_002305764.1| predicted protein [Populus trichocarpa] gi|222848728|gb|EEE86275.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/246 (71%), Positives = 205/246 (83%), Gaps = 2/246 (0%)

Query: 1   MLRLSSRFIRTKVSPVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYR 60
           M R+SSR  RT  S +  L T+T    S T    +  +QKQ+E AIP  FLKW SLG  R
Sbjct: 1   MQRISSRLTRT--SSLSTLLTQTIKRSSNTHSLKSANLQKQQEPAIPGHFLKWGSLGFVR 58

Query: 61  TSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLE 120
           TSRFATGFTPL+PKPLDSI+DIERAK KS EDLA+IWDDYHLGRGHI AS+K +LY+LL 
Sbjct: 59  TSRFATGFTPLEPKPLDSIMDIERAKTKSPEDLASIWDDYHLGRGHIGASMKAKLYQLLV 118

Query: 121 HRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAE 180
            R+ADC+YFVIPLW+GSGY TMF QVQ+PH++ TGLEDYK+RGTQA+PY T  FYT+FAE
Sbjct: 119 QRAADCKYFVIPLWRGSGYTTMFAQVQMPHMIFTGLEDYKSRGTQASPYLTVKFYTEFAE 178

Query: 181 SKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRA 240
           SKDLVLIRGDIVFTSKLTD EAEW+LET QSFYLNDVRFKLVE+FNK+ R+FEFKDVLR+
Sbjct: 179 SKDLVLIRGDIVFTSKLTDEEAEWILETAQSFYLNDVRFKLVEQFNKQTRDFEFKDVLRS 238

Query: 241 LSMPLL 246
           L+MP++
Sbjct: 239 LNMPIM 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434306|ref|XP_004134937.1| PREDICTED: uncharacterized protein LOC101220963 [Cucumis sativus] gi|449479251|ref|XP_004155549.1| PREDICTED: uncharacterized protein LOC101229737 [Cucumis sativus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/240 (72%), Positives = 201/240 (83%), Gaps = 2/240 (0%)

Query: 9   IRTKVSPVKDLFTKTSSSC--SFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFAT 66
           +RT    VK +   +S     S  ++  NP++ K +++  P DFLKWSSLG +RTS+FAT
Sbjct: 9   LRTIAGSVKTVIASSSPVVRQSSRSYFANPSLGKLQKETNPSDFLKWSSLGFFRTSKFAT 68

Query: 67  GFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADC 126
           GF PLQPKPLDSIID+ERAKD+S EDLA+IWDDYHLGRGHI  S+K +LY LLE R+ADC
Sbjct: 69  GFNPLQPKPLDSIIDMERAKDRSPEDLASIWDDYHLGRGHIGISMKAKLYHLLEQRAADC 128

Query: 127 RYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVL 186
           RYFVIPLW+GSGY TMFVQVQ PHI+ TGLEDYKARGTQAAPYFT S+Y +FAESKDLVL
Sbjct: 129 RYFVIPLWRGSGYTTMFVQVQTPHIIFTGLEDYKARGTQAAPYFTVSYYKEFAESKDLVL 188

Query: 187 IRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL 246
           IRGDIVFTSKLTD EAEWLLET QSFYLNDVR+KLVERFN++ R+FEFKDVL+AL MP+L
Sbjct: 189 IRGDIVFTSKLTDEEAEWLLETTQSFYLNDVRYKLVERFNRQTRDFEFKDVLQALDMPIL 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542961|ref|XP_003539932.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1 [Glycine max]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 152/219 (69%), Positives = 184/219 (84%)

Query: 28  SFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKD 87
           SF+   V    +K  +  IP DF KW S+G  RTS+FA+GF PLQPKPLDSI+D+ R KD
Sbjct: 33  SFSAVPVVAAAKKLHQPEIPSDFQKWGSVGFCRTSKFASGFNPLQPKPLDSIVDVHRLKD 92

Query: 88  KSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQ 147
           +  ED+A++WDDYH+GRGHI A++K +LY LLEHR+++CRYFVIPLW+GSGY TMFVQVQ
Sbjct: 93  RYPEDIASVWDDYHIGRGHIGATMKAKLYHLLEHRASECRYFVIPLWRGSGYTTMFVQVQ 152

Query: 148 LPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLE 207
            PH++ TGLEDYKARGTQAAPYFT +FYT+FAESKDLVLIRGD+VFTSKLTD EA+WLLE
Sbjct: 153 TPHMIFTGLEDYKARGTQAAPYFTLTFYTEFAESKDLVLIRGDVVFTSKLTDPEAKWLLE 212

Query: 208 TIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL 246
           T QSFYLND R+KLVERFN++  +FEFKDVL+ L MP+L
Sbjct: 213 TAQSFYLNDARYKLVERFNRQTHDFEFKDVLQVLDMPIL 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403431|ref|NP_565778.1| ATP synthase mitochondrial F1 complex assembly factor 1 [Arabidopsis thaliana] gi|15450478|gb|AAK96532.1| At2g34050/T14G11.17 [Arabidopsis thaliana] gi|20196905|gb|AAB67623.2| expressed protein [Arabidopsis thaliana] gi|24797040|gb|AAN64532.1| At2g34050/T14G11.17 [Arabidopsis thaliana] gi|330253817|gb|AEC08911.1| ATP synthase mitochondrial F1 complex assembly factor 1 [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 175/207 (84%)

Query: 40  KQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDD 99
           K  E ++P + +KW+SLG  R SRFA+GFTPLQ KPLDSI+D+ RAK KS E+L +IWDD
Sbjct: 42  KLSEASLPGNHIKWASLGSVRNSRFASGFTPLQQKPLDSIMDLARAKTKSPEELTSIWDD 101

Query: 100 YHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDY 159
           YHLGRGHI  ++K QLYRLLE R+++CRYFVIPLW+G+GY TMF QV+ PH++ TGLEDY
Sbjct: 102 YHLGRGHIGLTMKAQLYRLLEQRASECRYFVIPLWRGNGYITMFAQVEAPHMIFTGLEDY 161

Query: 160 KARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRF 219
           KARGTQAAPY T +FYT+ +E+KDLV IRGD+VFTSKLTD EA+W++ET QSFYLND R+
Sbjct: 162 KARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDEEAKWIMETAQSFYLNDSRY 221

Query: 220 KLVERFNKEARNFEFKDVLRALSMPLL 246
           KL+ERFNK   +FEFKDVL+AL MPLL
Sbjct: 222 KLLERFNKHTHDFEFKDVLQALDMPLL 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592442|gb|AAM64393.1| unknown [Arabidopsis thaliana]

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 142/207 (68%), Positives = 174/207 (84%)

Query: 40  KQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDD 99
           K  E ++P + +KW+SLG  R SRFA+GFTPLQ KPLDSI+D+ RAK KS E+L +IWDD
Sbjct: 42  KLSEASLPGNHIKWASLGSVRNSRFASGFTPLQQKPLDSIMDLARAKTKSPEELTSIWDD 101

Query: 100 YHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDY 159
           YHLGRGHI  ++K QLYRLLE R+++CRYFVIP W+G+GY TMF QV+ PH++ TGLEDY
Sbjct: 102 YHLGRGHIGLTMKAQLYRLLEQRASECRYFVIPSWRGNGYITMFAQVEAPHMIFTGLEDY 161

Query: 160 KARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRF 219
           KARGTQAAPY T +FYT+ +E+KDLV IRGD+VFTSKLTD EA+W++ET QSFYLND R+
Sbjct: 162 KARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDEEAKWIMETAQSFYLNDSRY 221

Query: 220 KLVERFNKEARNFEFKDVLRALSMPLL 246
           KL+ERFNK   +FEFKDVL+AL MPLL
Sbjct: 222 KLLERFNKHTHDFEFKDVLQALDMPLL 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144174|ref|XP_003573199.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1-like [Brachypodium distachyon]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 169/214 (78%), Gaps = 3/214 (1%)

Query: 34  VNPTIQKQREKAI-PCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAED 92
           V PT Q   E AI P +  +W     Y  S+FA+GFTPLQPK L SI+DIERAK  S E 
Sbjct: 29  VPPTTQPPAETAIAPANLARWLPRRGY--SQFASGFTPLQPKTLGSILDIERAKGLSPEH 86

Query: 93  LATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHIL 152
           L   WDDYHLGRGHI  S+K +LY LLE RS+ CRYFVIPLW+GSGY TMF+QVQ+PHI+
Sbjct: 87  LVAAWDDYHLGRGHIGTSMKAKLYHLLEQRSSTCRYFVIPLWRGSGYTTMFMQVQMPHII 146

Query: 153 VTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSF 212
            TGLEDYKARGTQA+PY+T + YT+FAE+KD VL+RGD+VFTSKLTDSEA+ LLET  SF
Sbjct: 147 FTGLEDYKARGTQASPYYTVTHYTEFAETKDTVLVRGDVVFTSKLTDSEAKCLLETAHSF 206

Query: 213 YLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL 246
           YLNDVR+KLVERFNKE  +FEFKDVL+ L MP +
Sbjct: 207 YLNDVRYKLVERFNKETHDFEFKDVLQVLDMPTM 240

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223948531|gb|ACN28349.1| unknown [Zea mays] gi|413936424|gb|AFW70975.1| ATP11 protein [Zea mays]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 142/221 (64%), Positives = 172/221 (77%), Gaps = 2/221 (0%)

Query: 26  SCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERA 85
           + S   +T  P++Q     A P D  +W     Y  S+FA+GFTPL+PKPL SI+DIERA
Sbjct: 31  AVSHGGWTTRPSLQPPVRTAAPVDLTRWPPRRGY--SQFASGFTPLKPKPLGSILDIERA 88

Query: 86  KDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQ 145
           K  S + L   WDDYHLGRGHI AS+K +LY LLE RSA CR+FVIPLWKGSGY TMF+Q
Sbjct: 89  KGLSPDHLVAAWDDYHLGRGHIGASMKAKLYHLLEQRSASCRHFVIPLWKGSGYTTMFMQ 148

Query: 146 VQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWL 205
           VQ+P+++ TGLEDYKARGTQA+PY+T + YT+FAE+KD VLIRGD+VFTSKLTDSEA+ L
Sbjct: 149 VQMPYMVFTGLEDYKARGTQASPYYTVTHYTEFAETKDTVLIRGDVVFTSKLTDSEAKTL 208

Query: 206 LETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL 246
           LET  SFYLNDVR++LVERFNKE  +FEF DVL+ L MP +
Sbjct: 209 LETAHSFYLNDVRYRLVERFNKETHDFEFGDVLKVLDMPTM 249

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517502|ref|XP_003527426.1| PREDICTED: uncharacterized protein LOC100803504 isoform 1 [Glycine max]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/237 (61%), Positives = 172/237 (72%), Gaps = 18/237 (7%)

Query: 10  RTKVSPVKDLFTKTSSSCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFT 69
           R  V  + D F   S S       V  T +K  +  IP  F KW S+G +RTS+FA+GF 
Sbjct: 19  RINVFSINDPFASRSFSA---VPVVAATTRKLHQPEIPSSFQKWGSVGFFRTSKFASGFN 75

Query: 70  PLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYF 129
           PLQ KPLD               L  IW  YH+GRGHI A++K +LY LLEHR+++CRYF
Sbjct: 76  PLQRKPLD---------------LGRIWSTYHIGRGHIGATMKAKLYHLLEHRASECRYF 120

Query: 130 VIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRG 189
           VIPLW+GSGY TMF+QVQ  H++ TGLEDYKARGTQAAPYFT SFYT+FAESKDLVLIRG
Sbjct: 121 VIPLWRGSGYTTMFIQVQTQHMVFTGLEDYKARGTQAAPYFTVSFYTEFAESKDLVLIRG 180

Query: 190 DIVFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL 246
           D+VFTSKLTDSEA+WLLE  QSFYLND R+KLVERFN++  +FEFKDVL+ L MP+L
Sbjct: 181 DVVFTSKLTDSEAKWLLEAAQSFYLNDARYKLVERFNRQTHDFEFKDVLQVLDMPIL 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226532321|ref|NP_001150475.1| ATP11 protein [Zea mays] gi|195639518|gb|ACG39227.1| ATP11 protein [Zea mays]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/221 (63%), Positives = 172/221 (77%), Gaps = 2/221 (0%)

Query: 26  SCSFTTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERA 85
           + S   +T  P++Q     A P +  +W     Y  S+FA+GFTPL+PKPL SI+DIERA
Sbjct: 31  AVSHGGWTTRPSLQPPVRTAAPVELTRWPPRRGY--SQFASGFTPLKPKPLGSILDIERA 88

Query: 86  KDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQ 145
           K  S + L   WDDYHLGRGHI AS+K +LY LLE RSA CR+FVIPLWKGSGY TMF+Q
Sbjct: 89  KGLSPDHLVAAWDDYHLGRGHIGASMKAKLYHLLEQRSASCRHFVIPLWKGSGYTTMFMQ 148

Query: 146 VQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWL 205
           VQ+P+++ TGLEDYKARGTQA+PY+T + YT+FAE+KD VLIRGD+VFTSKLTDSEA+ L
Sbjct: 149 VQMPYMVFTGLEDYKARGTQASPYYTVTHYTEFAETKDTVLIRGDVVFTSKLTDSEAKTL 208

Query: 206 LETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALSMPLL 246
           LET  SFYLNDVR++LVERFNKE  +FEF DVL+ L MP +
Sbjct: 209 LETAHSFYLNDVRYRLVERFNKETHDFEFGDVLKVLDMPTM 249

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2055491	248	AT2G34050 [Arabidopsis thalian	0.841	0.834	0.690	4.2e-79
DICTYBASE|DDB_G0280243	300	DDB_G0280243 "ATP synthase mit	0.703	0.576	0.325	6.8e-24
UNIPROTKB|Q5TC12	328	ATPAF1 "ATP synthase mitochond	0.772	0.579	0.292	4.7e-16
UNIPROTKB|I3L448	351	ATPAF1 "ATP synthase mitochond	0.772	0.541	0.292	6.7e-16
MGI|MGI:2180560	324	Atpaf1 "ATP synthase mitochond	0.813	0.617	0.278	9.8e-16
FB|FBgn0022344	278	CG10340 [Drosophila melanogast	0.678	0.600	0.292	9.8e-16
UNIPROTKB|F1PPF5	394	ATPAF1 "Uncharacterized protei	0.772	0.482	0.303	1.3e-15
UNIPROTKB|F1MG81	323	ATPAF1 "Uncharacterized protei	0.760	0.578	0.297	1.6e-15
RGD|1305417	348	Atpaf1 "ATP synthase mitochond	0.813	0.574	0.269	5.2e-15
UNIPROTKB|F1N9I9	319	ATPAF1 "Uncharacterized protei	0.695	0.536	0.292	7.6e-15

TAIR|locus:2055491 AT2G34050 [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 143/207 (69%), Positives = 175/207 (84%)

Query:    40 KQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDD 99
             K  E ++P + +KW+SLG  R SRFA+GFTPLQ KPLDSI+D+ RAK KS E+L +IWDD
Sbjct:    42 KLSEASLPGNHIKWASLGSVRNSRFASGFTPLQQKPLDSIMDLARAKTKSPEELTSIWDD 101

Query:   100 YHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDY 159
             YHLGRGHI  ++K QLYRLLE R+++CRYFVIPLW+G+GY TMF QV+ PH++ TGLEDY
Sbjct:   102 YHLGRGHIGLTMKAQLYRLLEQRASECRYFVIPLWRGNGYITMFAQVEAPHMIFTGLEDY 161

Query:   160 KARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVRF 219
             KARGTQAAPY T +FYT+ +E+KDLV IRGD+VFTSKLTD EA+W++ET QSFYLND R+
Sbjct:   162 KARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDEEAKWIMETAQSFYLNDSRY 221

Query:   220 KLVERFNKEARNFEFKDVLRALSMPLL 246
             KL+ERFNK   +FEFKDVL+AL MPLL
Sbjct:   222 KLLERFNKHTHDFEFKDVLQALDMPLL 248

GO:0005739 "mitochondrion" evidence=ISM;IEA

GO:0006461 "protein complex assembly" evidence=IEA

DICTYBASE|DDB_G0280243 DDB_G0280243 "ATP synthase mitochondrial F1 complex assembly factor 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 57/175 (32%), Positives = 95/175 (54%)

Query:    73 PKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIP 132
             P  L+ ++ IE  + +    +  IW  YHL +  +CA +   +Y+ L  RS  C  F+ P
Sbjct:   103 PGKLNEVVKIELMEKEDVATIKDIWLQYHLKKDCLCAVIPKDIYKKLIERSKACPIFIFP 162

Query:   133 LWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIV 192
             L    G+ +M  Q Q  H + T LE YK     A P+  AS Y DF +SK++VL+R +  
Sbjct:   163 LPGDKGFISMLYQNQGDHFVFTYLEQYKKHTVNAVPWMVASHYIDFIDSKEIVLMRAEPN 222

Query:   193 FTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRAL-SMPLL 246
                 L + +A++L   +Q++ L+D ++K+++ F      F+F DV++ + SM LL
Sbjct:   223 L-EVLNNIQAQYLYNQLQTYLLDDNKYKIMQTFTNRPNEFDFNDVIKNMDSMSLL 276

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5TC12 ATPAF1 "ATP synthase mitochondrial F1 complex assembly factor 1" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 58/198 (29%), Positives = 93/198 (46%)

Query:    46 IPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRG 105
             I C   K  +LG    +R   GFT  + K L SI +IE  K+K+AE++  IW  Y   + 
Sbjct:   119 IKCVEQKTDALGKQSVNR---GFT--KDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKD 173

Query:   106 HICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQ 165
              + A +  + + L+ +R+  C  F+  L +  GY     Q     +  T L + + RG  
Sbjct:   174 TVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGEA 233

Query:   166 AAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR--FKLVE 223
             AA       Y +  E K +VL+  ++  T  L  +EA+ +   +Q FY  D +  + LVE
Sbjct:   234 AASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVAEAQCIANQVQLFYATDRKETYGLVE 292

Query:   224 RFNKEARNFEFKDVLRAL 241
              FN     F++  V+  L
Sbjct:   293 TFNLRPNEFKYMSVIAEL 310

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L448 ATPAF1 "ATP synthase mitochondrial F1 complex assembly factor 1" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 58/198 (29%), Positives = 93/198 (46%)

Query:    46 IPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRG 105
             I C   K  +LG    +R   GFT  + K L SI +IE  K+K+AE++  IW  Y   + 
Sbjct:   142 IKCVEQKTDALGKQSVNR---GFT--KDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKD 196

Query:   106 HICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQ 165
              + A +  + + L+ +R+  C  F+  L +  GY     Q     +  T L + + RG  
Sbjct:   197 TVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGEA 256

Query:   166 AAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR--FKLVE 223
             AA       Y +  E K +VL+  ++  T  L  +EA+ +   +Q FY  D +  + LVE
Sbjct:   257 AASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVAEAQCIANQVQLFYATDRKETYGLVE 315

Query:   224 RFNKEARNFEFKDVLRAL 241
              FN     F++  V+  L
Sbjct:   316 TFNLRPNEFKYMSVIAEL 333

GO:0005739 "mitochondrion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

MGI|MGI:2180560 Atpaf1 "ATP synthase mitochondrial F1 complex assembly factor 1" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 58/208 (27%), Positives = 95/208 (45%)

Query:    36 PTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLAT 95
             P    ++   I C   K  +LG    S+   GFT  + K L S+ ++E  KDK+AE++  
Sbjct:   105 PVGHSKQSDFIKCMEQKTDALGKQPVSK---GFT--KDKTLSSVFNVEMVKDKTAEEIKQ 159

Query:    96 IWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTG 155
             IW  Y   +  + A +  + + L+ +R+  C  F+  L +  GY     Q     +  T 
Sbjct:   160 IWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTA 219

Query:   156 LEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLN 215
             L + + RG  AA       Y +  E K +VL+  ++  T  L   EA+ +   +Q FY  
Sbjct:   220 LINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVVEAQCIANQVQLFYAT 278

Query:   216 DVR--FKLVERFNKEARNFEFKDVLRAL 241
             D +  + LVE FN     F++  V+  L
Sbjct:   279 DRKEIYGLVETFNFRPNEFKYMSVIAEL 306

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0008150 "biological_process" evidence=ND

FB|FBgn0022344 CG10340 [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 50/171 (29%), Positives = 89/171 (52%)

Query:    71 LQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFV 130
             L  K L  I+ +E  +DK+AE+++ IW +YH  +  + A+L T  Y  L  R+ +   F+
Sbjct:   102 LPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENLMARAKEHPVFL 161

Query:   131 IPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGD 190
             +PL +  G+  + +Q     +  T L  Y+     A    T   YT+  + K +VL+RG+
Sbjct:   162 LPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPECLTVVHYTE-VQDKGVVLMRGE 220

Query:   191 IVFTSKLTDSEAEWLLETIQSFYL--NDVRFKLVERFNKEARNFEFKDVLR 239
                T  LT  EA+ L   +Q FYL  ++ + +L+  F ++   F+  D+++
Sbjct:   221 YD-TKVLTAQEAQCLANELQMFYLKPDEGKLRLLNTFTRKPDEFKHMDLIK 270

GO:0005739 "mitochondrion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

UNIPROTKB|F1PPF5 ATPAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 60/198 (30%), Positives = 92/198 (46%)

Query:    46 IPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRG 105
             I C   K  +LG    SR   GFT  + K L SI +IE  KDK+AE++  IW  Y   + 
Sbjct:   185 IRCVEQKTDTLGKQPVSR---GFT--KDKTLSSIFNIEMVKDKTAEEIRQIWQQYFAAKD 239

Query:   106 HICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQ 165
              + A +  + + L+  R+  C  F+  L +  GY     Q     +  T L + + RG  
Sbjct:   240 TVYAVIPEEKFDLIWTRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGDA 299

Query:   166 AAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR--FKLVE 223
             AA       Y +  E K +VL+  ++  T  L  +EA+ +   +Q FY  D +  + LVE
Sbjct:   300 AASQLVLYHYPELKEEKGIVLMTAEMDPTF-LNVAEAQCIANQVQLFYATDRKETYGLVE 358

Query:   224 RFNKEARNFEFKDVLRAL 241
              FN     F++  V+  L
Sbjct:   359 TFNFRPNEFKYMSVIAEL 376

GO:0005739 "mitochondrion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

UNIPROTKB|F1MG81 ATPAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 59/198 (29%), Positives = 94/198 (47%)

Query:    49 DFLKW---SSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRG 105
             DF+K     +LG    SR   GFT  + K L SI +IE  K K+AE++  IW  Y   + 
Sbjct:   114 DFIKCVEQKTLGKQPVSR---GFT--KDKTLSSIFNIEMVKGKTAEEIKQIWQQYFAAKD 168

Query:   106 HICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQ 165
              + A +  + + L+ +R+  C  F+  L +  GY     Q     +  T L + + RG  
Sbjct:   169 TVYAVIPKEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGEA 228

Query:   166 AAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR--FKLVE 223
             AA       Y +  E K +VL+  ++  T  L+ +EA+ +   +Q FY  D +  + LVE
Sbjct:   229 AASQLILYHYPELKEEKGIVLMTAEMDSTF-LSVAEAQCMANQVQLFYATDRKETYGLVE 287

Query:   224 RFNKEARNFEFKDVLRAL 241
              FN     F++  V+  L
Sbjct:   288 TFNFRPNEFKYMSVIAEL 305

GO:0005739 "mitochondrion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

RGD|1305417 Atpaf1 "ATP synthase mitochondrial F1 complex assembly factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 194 (73.4 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 56/208 (26%), Positives = 95/208 (45%)

Query:    36 PTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLAT 95
             P    ++   I C   K  +LG    S+   GFT  + K L S+ ++E  KDK+ E++  
Sbjct:   129 PVGHSKQSDFIRCVEQKTDALGKQPVSK---GFT--KDKTLSSVFNVEMVKDKTGEEIKQ 183

Query:    96 IWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTG 155
             IW  Y   +  + A +  + + ++ +R+  C  F+  L +  GY     Q     +  T 
Sbjct:   184 IWQQYFSAKDTVYAVIPKEKFDVIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTA 243

Query:   156 LEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLN 215
             L + + RG  AA       Y +  E K +VL+  ++  T  L  +EA+ +   +Q FY  
Sbjct:   244 LINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVAEAQCIANQVQLFYAT 302

Query:   216 DVR--FKLVERFNKEARNFEFKDVLRAL 241
             D +  + LVE FN     F++  V+  L
Sbjct:   303 DRKEIYGLVETFNFRPNEFKYMSVIAEL 330

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006461 "protein complex assembly" evidence=IEA

UNIPROTKB|F1N9I9 ATPAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 52/178 (29%), Positives = 87/178 (48%)

Query:    67 GFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADC 126
             GFT  + K LDSI+++E  K+KSAE++  IW+ Y   +  + A +  + + L+  R+  C
Sbjct:   128 GFT--RDKTLDSILNVEMVKEKSAEEIEQIWNRYFSAKDTVYAVIPAEKFDLIWKRAQKC 185

Query:   127 RYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVL 186
               F+  L +  GY     Q     +  T L + + +G  A        Y +  E K +VL
Sbjct:   186 PSFLYALPRKEGYEFFVGQWSGTELHFTSLINIQTQGEAAPSQLVLYHYPELQEEKGIVL 245

Query:   187 IRGDIVFTSK-LTDSEAEWLLETIQSFYLND--VRFKLVERFNKEARNFEFKDVLRAL 241
             +  ++   SK L   EA+ L   +Q FY  +    ++LVE FN  +  F++  V+  L
Sbjct:   246 MTAEM--DSKFLVVHEAQCLANQVQLFYATERSETYELVETFNHRSSEFKYMSVIAEL 301

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
pfam06644	250	pfam06644, ATP11, ATP11 protein	6e-69

>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein

 Score =  212 bits (541), Expect = 6e-69
 Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 25/204 (12%)

Query: 60  RTSRFATGFTPLQP--------------KPLDSIIDIERAKDKSAEDLATIWDDYHLGRG 105
             S+ A+ F  L+P              KPL SI+D+E+ KD SAE++  IW  YH  + 
Sbjct: 44  GPSKQASKFKTLKPPKPADKKKPFDKPFKPLSSILDVEKIKDLSAEEIEFIWRAYHAKKD 103

Query: 106 HICASLKTQLYRLLEHRSADCRYFVIPLWKGS-GYATMFVQVQLP-----HILVTGLEDY 159
            +CA +  + Y L+E R+ +C  FV+PL +   GY   F+Q Q       H++ T L +Y
Sbjct: 104 SLCAVIPAETYELMEARAKECPQFVLPLPRSEEGYEMHFLQWQFAGPNTSHVIFTPLAEY 163

Query: 160 KARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFY-----L 214
           K  G  A P+ T + YTD A+ K +VL+RG++   S L+  EA+ L   +Q FY     L
Sbjct: 164 KLHGEFAQPHLTLTHYTDLAKDKGIVLMRGEVETKSGLSVQEAQLLALQLQRFYGEETQL 223

Query: 215 NDVRFKLVERFNKEARNFEFKDVL 238
              R KL+E F K    F+ +D++
Sbjct: 224 AKERLKLLETFTKGPEEFKVEDLI 247

This family consists of several eukaryotic ATP11 proteins. In Saccharomyces cerevisiae, expression of functional F1-ATPase requires two proteins encoded by the ATP11 and ATP12 genes. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, the catalytic unit of the ATP synthase. Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
KOG3281	273	consensus Mitochondrial F1-ATPase assembly protein	100.0
PF06644	266	ATP11: ATP11 protein; InterPro: IPR010591 This fam	100.0

>KOG3281 consensus Mitochondrial F1-ATPase assembly protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-68  Score=476.28  Aligned_cols=206  Identities=34%  Similarity=0.525  Sum_probs=198.0

Q ss_pred             hhcccCCC--cccccccccccccccccccCCCCCC---CCCChhhhchhhhccCCHHHHHHHHHHHhcCCCceeEeechH
Q 025889           40 KQREKAIP--CDFLKWSSLGLYRTSRFATGFTPLQ---PKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQ  114 (246)
Q Consensus        40 ~~~~~~~~--~~~~~~~~~~~~~~~~~~sgFs~p~---~K~L~sIvklell~~~s~eeI~~IW~~yH~~k~~i~AvIp~~  114 (246)
                      |++++.-+  ++...|...+-+...+|++|+++.+   .|+|||||||++++++|++||++||++||++|+.+|||||++
T Consensus        61 kl~e~~~~~~g~~~~~~~~~~v~~Ks~s~~~~s~~k~~~K~L~simdve~iKeks~eEi~qiW~~~~a~kdtl~Avip~e  140 (273)
T KOG3281|consen   61 KLSEPVKNLLGKSQTKERSKVVPKKSFSAGKQSVGKSPLKTLDSIMDVEKIKEKSAEEIEQIWRARNAGKDTLSAVIPKE  140 (273)
T ss_pred             hhhhhhcchhhhhhhhhhhccccccccccccCccCcCCCccHHHHHhHHHHcccCHHHHHHHHHHHhccccceeeeccHH
Confidence            67777777  8999999999999999999999987   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCceeeeccCCCCeeEEEEeeeCCeEEEeehHHHHhcCCCCCCeEEEEeehhhcccCCeEEEeeeeecC
Q 025889          115 LYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFT  194 (246)
Q Consensus       115 ~Y~~m~~rAk~~P~FVlPlpR~~Gye~~~~Q~q~~~vlfT~L~eYK~~ge~A~P~ltlthytELa~sKgIVLmrGdi~~~  194 (246)
                      .|+.|.+||+.||+||+||||++|||++..||..+|||||+|+|||+|||+|+||+|++||+||.++||||||||+++ +
T Consensus       141 ~yd~mmsrAr~~P~FvlpLPR~e~~ef~~~qF~~~hl~fTsLleYk~~ge~Aap~ltl~hyteL~e~KGIVlMrge~e-~  219 (273)
T KOG3281|consen  141 IYDKMMSRARMYPYFVLPLPRGEGGEFFQWQFPAPHLHFTSLLEYKLRGEYAAPHLTLLHYTELLELKGIVLMRGEVE-P  219 (273)
T ss_pred             HHHHHHHHhhcCCeeeeccccccCceEEEEEccCCeeEeeHHHHHHhhccccCcceeeeehhhHhhccCeEEEecccc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999997 4


Q ss_pred             CCCCHHHHHHHHHHHHHhccccch--hhHHHHhhCCCCCCCHHHHHHHhCCCCC
Q 025889          195 SKLTDSEAEWLLETIQSFYLNDVR--FKLVERFNKEARNFEFKDVLRALSMPLL  246 (246)
Q Consensus       195 ~~ls~~EAq~Lv~~lQ~FY~~~~r--~~LVe~FN~~p~eFd~~~li~el~~~~~  246 (246)
                      ++||++|||||++++|+||+.++.  ++||++||++|.+|++++||.+++|+-+
T Consensus       220 ~~Lt~qeAQ~l~~~vQ~FY~~~~~~t~~LL~~Fsk~p~dF~~~~vi~~ld~~~l  273 (273)
T KOG3281|consen  220 KKLTAQEAQLLALAVQKFYLADEEETLALLETFSKGPADFKLMKVITELDMLEL  273 (273)
T ss_pred             ccccHHHHHHHHHHHHHHHcCCcchHHHHHHHHhcCCCcccHHHHHHHHhhccC
Confidence            699999999999999999998765  9999999999999999999999999854

>PF06644 ATP11: ATP11 protein; InterPro: IPR010591 This family consists of several eukaryotic ATP11 proteins

Probab=100.00  E-value=7.9e-69  Score=486.51  Aligned_cols=171  Identities=40%  Similarity=0.723  Sum_probs=143.6

Q ss_pred             CCCCCChhhhchhhhccCCHHHHHHHHHHHhc-CCCceeEeechHHHHHHHHHhhcCCceeeeccCC-CCeeEEEEeee-
Q 025889           71 LQPKPLDSIIDIERAKDKSAEDLATIWDDYHL-GRGHICASLKTQLYRLLEHRSADCRYFVIPLWKG-SGYATMFVQVQ-  147 (246)
Q Consensus        71 p~~K~L~sIvklell~~~s~eeI~~IW~~yH~-~k~~i~AvIp~~~Y~~m~~rAk~~P~FVlPlpR~-~Gye~~~~Q~q-  147 (246)
                      +++|+|||||||||+++++++||++||++||. ++++||||||+++|++|..||++||+|||||||+ +|||+||+||+ 
T Consensus        82 ~~~K~L~~il~lek~~~~~~~eI~~iW~~~h~~~~~~l~AvIp~~~y~~m~~~A~~~P~FVlPlPr~~~Gye~~~~Qw~f  161 (266)
T PF06644_consen   82 SPPKPLDSILKLEKLKDLSPEEIEFIWRAYHANKKDSLCAVIPAETYDKMEARAKKCPQFVLPLPRPDEGYEFHFLQWQF  161 (266)
T ss_dssp             -SS--HHHHS-HHHHTTS-HHHHHHHHHHHTTT-SSEEEEEEETTTHHHHHHHHHH--EEEEEEE-----EEEEEEEEEE
T ss_pred             CCCCcHHHHhCHHHHccCCHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhCCcceecCCCCCCceEEEEEEEec
Confidence            45799999999999999999999999999999 5679999999999999999999999999999999 99999999999 


Q ss_pred             ----CCeEEEeehHHHHhcCCCCCCeEEEEeehhhcccCCeEEEeeeeecCCCCCHHHHHHHHHHHHHhc-------ccc
Q 025889          148 ----LPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFY-------LND  216 (246)
Q Consensus       148 ----~~~vlfT~L~eYK~~ge~A~P~ltlthytELa~sKgIVLmrGdi~~~~~ls~~EAq~Lv~~lQ~FY-------~~~  216 (246)
                          ++|||||+|+|||+||++|+||+|||||+||+++||||||||+|+++.+||++|||||++++|+||       .++
T Consensus       162 ~~~~~~~~lfT~L~eYK~~~e~A~P~ltlthy~eLa~~KgiVLmrG~i~~~~~ls~~eAq~L~~~lQ~FY~~~~~~~~~~  241 (266)
T PF06644_consen  162 PGPNTSHVLFTSLAEYKLHGEFAQPHLTLTHYTELAESKGIVLMRGEIDPDSGLSKQEAQLLVNQLQRFYAAGEEGEDDK  241 (266)
T ss_dssp             EETTEEEEEEEETTTTTT-HHHHS-SEEEEEE-TTHHHH-EEEEEEEE-TTSS--HHHHHHHHHHHHHHTGGG--SHHHH
T ss_pred             CCCCCCEEEEeeHHHHhhCcccCCceEEeeehHhHhhcCCeEEEeeeecCCCCCCHHHHHHHHHHHHHHhcccccccccH
Confidence                889999999999999999999999999999999999999999999877799999999999999999       446


Q ss_pred             chhhHHHHhhCCCCCCCHHHHHHHh
Q 025889          217 VRFKLVERFNKEARNFEFKDVLRAL  241 (246)
Q Consensus       217 ~r~~LVe~FN~~p~eFd~~~li~el  241 (246)
                      ++++||++||++|++||+++||++.
T Consensus       242 ~~~~ll~~Fn~~p~~F~~~~li~ea  266 (266)
T PF06644_consen  242 ERYKLLETFNKGPEEFDVEDLIEEA  266 (266)
T ss_dssp             HHHHHHHHHHHT-TT--HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHhcC
Confidence            7999999999999999999999974

The expression of functional F1-ATPase requires two proteins which are encoded by the ATP11 and ATP12 genes []. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, which is the catalytic unit of ATP synthase. It binds to the free beta subunits of F1, which prevents the beta subunit from associating with itself in non-productive complex. It also allows for the formation of a (alpha beta)3 hexamer []. ; GO: 0006461 protein complex assembly, 0005739 mitochondrion; PDB: 2P4F_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
2p4f_A	299	Crystal Structure Of Atp11 Functional Domain From C		9e-10

>pdb|2P4F|A Chain A, Crystal Structure Of Atp11 Functional Domain From Candida Glabrata Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 134 WKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVF 193
           W+ +G  T+       H L+T L +YK     A P+ T  F+ D A  KD+VL+ G +  
Sbjct: 186 WQFAGPNTV-------HCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVES 238
Query: 194 TSKLTDSEAEWLLETIQSFY--------LNDVRFKLVERFNKEARNFEFKDVLR-ALSM 243
            S ++  +A+ LL  +Q FY        +   R +L+E FNK ++NF+   +++ A SM
Sbjct: 239 DSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQLAQSM 297

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
2p4f_A	299	Similar to SP|P32453 saccharomyces cerevisiae YNL	3e-49

>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138} Length = 299

 Score =  162 bits (412), Expect = 3e-49
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 29/231 (12%)

Query: 36  PTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKSAEDLAT 95
                +          K S+    ++        P   K LD  + +++ KD S +++  
Sbjct: 64  LNAGSRIHTNKEHKTTKMSNKSNEKSGNVLPKDKPY--KTLDDYLKLDKIKDLSKQEVEF 121

Query: 96  IWDDYHLGRGH-ICASL-KTQLYRLLEHRSADCRYFVIPLWKGSGYAT------------ 141
           +W      R   + A +   + ++ +   +     FV+PL + +                
Sbjct: 122 LWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPRENAADGNKADKDSVPVEL 181

Query: 142 -----MFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSK 196
                 F      H L+T L +YK     A P+ T  F+ D A  KD+VL+ G +   S 
Sbjct: 182 QYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVESDSN 241

Query: 197 LTDSEAEWLLETIQSFY--------LNDVRFKLVERFNKEARNFEFKDVLR 239
           ++  +A+ LL  +Q FY        +   R +L+E FNK ++NF+   +++
Sbjct: 242 VSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQ 292

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
2p4f_A	299	Similar to SP|P32453 saccharomyces cerevisiae YNL	100.0

>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}

Probab=100.00  E-value=8.7e-68  Score=484.75  Aligned_cols=174  Identities=28%  Similarity=0.447  Sum_probs=165.8

Q ss_pred             CCCCCCChhhhchhhhccCCHHHHHHHHHHHhcCC-CceeEeec-hHHHHHHHHHhhcCCceeeeccCC-----------
Q 025889           70 PLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGR-GHICASLK-TQLYRLLEHRSADCRYFVIPLWKG-----------  136 (246)
Q Consensus        70 ~p~~K~L~sIvklell~~~s~eeI~~IW~~yH~~k-~~i~AvIp-~~~Y~~m~~rAk~~P~FVlPlpR~-----------  136 (246)
                      .+++|+|+||||||||++++++||++||++||.++ ++|||||| +++|++|.+||++||+|||||||+           
T Consensus        96 ~~p~K~L~sil~lekl~~~~~~eI~~IWr~~H~~k~~~l~AvIp~~~~Y~~m~~~Ak~~P~FVLPLPR~~~~~~~~~~~~  175 (299)
T 2p4f_A           96 DKPYKTLDDYLKLDKIKDLSKQEVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPRENAADGNKADKD  175 (299)
T ss_dssp             CCSSCCHHHHSCHHHHTTSCHHHHHHHHHHHTTTCSSEEEEEEETTTTHHHHHHHHHHCCEEEEEEEC------------
T ss_pred             CCCCCcHHHhhCHHHhccCCHHHHHHHHHHHHcCCCCeEEEecChHHHHHHHHHHHHhCCceEEeCCCCccccccccccc
Confidence            67899999999999999999999999999999998 58999999 999999999999999999999997           


Q ss_pred             -CCeeEEEEeeeC-----CeEEEeehHHHHhcCCCCCCeEEEEeehhhcccCCeEEEeeeeecCCCCCHHHHHHHHHHHH
Q 025889          137 -SGYATMFVQVQL-----PHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQ  210 (246)
Q Consensus       137 -~Gye~~~~Q~q~-----~~vlfT~L~eYK~~ge~A~P~ltlthytELa~sKgIVLmrGdi~~~~~ls~~EAq~Lv~~lQ  210 (246)
                       +|||+||+||++     .||+||+|+|||+||++|+||+|||||+||+++||||||||+|+++++||++|||||++++|
T Consensus       176 ~~Gye~~flQw~f~~~~t~~vlfT~L~eYK~~ge~A~P~ltlthy~ELa~~KgiVLmrGev~~~~~ls~~eAq~Lv~~lQ  255 (299)
T 2p4f_A          176 SVPVELQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVESDSNVSLQDAQLLLLNVQ  255 (299)
T ss_dssp             --CEEEEEEEEEEEETTEEEEEEEETTTTTTCHHHHSCSEEEEEECTTHHHHCEEEEEEEECTTSSCCHHHHHHHHHHHH
T ss_pred             cCceeEEEEeeeccCCCCCEEEeeeHHHHhhccccCCceEEEEeehhhhhcCCeEEEeeeeccCCCCCHHHHHHHHHHHH
Confidence             799999999998     69999999999999999999999999999999999999999999767999999999999999


Q ss_pred             Hhccc--------cchhhHHHHhhCCCCCCCHHHHHHHhCC
Q 025889          211 SFYLN--------DVRFKLVERFNKEARNFEFKDVLRALSM  243 (246)
Q Consensus       211 ~FY~~--------~~r~~LVe~FN~~p~eFd~~~li~el~~  243 (246)
                      +||++        +++++||++||++|++|||++||++++.
T Consensus       256 ~FY~~~~~~~~~~~~r~~Lv~~Fn~~p~~F~~~~li~e~e~  296 (299)
T 2p4f_A          256 RFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQLAQS  296 (299)
T ss_dssp             HHTTGGGCCSHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHC
T ss_pred             HHhCCccccccchHHHHHHHHHHhCCCCcCCHHHHHHHHHh
Confidence            99987        3589999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00