Citrus Sinensis ID: 025977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccEEEEcccccEEEEEcccEEEEEcccccccEEEEEEEccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEccccEEEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEEccHHHHHHHHHHHHHHcccEEccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccccccHHcccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEcccccEEEEEccccEEEEcccccEEEEcccccccEEEEEEEccccccHHHcccHHHHHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHccEEEcc
Coil and Loop (DISEMBL)
maslqhspsssihqtsflnslpqlgvqkyggvlpAVCRRGISLIVKAEhasmassansldkcgrrqmIAVGVIapwvslvnqtppsfaaesnkgflsvtdkkdgysfvypfgwqeVIIEGQDKVFKDVIEplesvsvnliptgkqdirdfgppQEVAETLIKKflapptqktkIIAAsendvdgkayYAFEFTAQAPNYIRHALGvvtvgngkfytlttganerrwgKMKDRLQTVIESFKISNV
Flexible Loop (DISEMBL)
maslqhspsssiHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSvnliptgkqdirdFGPPQEVAETLIKkflapptqktkiIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTlttganerrwgkmkDRLQTViesfkisnv
Low Complexity Region (SEG)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV
Disordered region (IsUnstruct)
****************FLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHA********LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVI********
Disordered Region (DISOPRED)
*******************************************************************IAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQ***********VDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV
Disordered Region (DISEMBL)
**************TSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV
Disordered Region (DISPRO)
******************N*******************RGISLIVKAEHA********LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
P82538	230	PsbP-like protein 1, chlo	yes	no	0.865	0.921	0.690	7e-85
O80634	238	PsbP-like protein 2, chlo	no	no	0.791	0.815	0.382	7e-32
O23403	287	PsbP domain-containing pr	no	no	0.771	0.658	0.243	2e-09
O49080	264	Oxygen-evolving enhancer	N/A	no	0.808	0.75	0.284	8e-09
Q40407	265	Oxygen-evolving enhancer	N/A	no	0.559	0.516	0.281	3e-07
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.559	0.520	0.281	5e-07
P93566	260	Oxygen-evolving enhancer	N/A	no	0.575	0.542	0.269	8e-07
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.865	0.796	0.225	9e-07
P29795	258	Oxygen-evolving enhancer	N/A	no	0.812	0.771	0.258	1e-06
P18212	265	Oxygen-evolving enhancer	N/A	no	0.575	0.532	0.269	1e-06

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score =  313 bits (802), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 147/213 (69%), Positives = 181/213 (84%), Gaps = 1/213 (0%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG 210
           GPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV 
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVF 196

Query: 211 NGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243
           NG FYTLTTGANERRW KMKDRL TV++SFKI+
Sbjct: 197 NGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.
Arabidopsis thaliana (taxid: 3702)

>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 10/204 (4%)

Query: 46  KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDK 101
           KA+ +       S +   RRQ ++ VG      +LV  + P+    A E  K +    D+
Sbjct: 41  KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDR 94

Query: 102 KDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI 161
           +DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+
Sbjct: 95  EDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLV 154

Query: 162 KKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGA 221
           K   A P Q   I    E   DGK YY FE+  + P Y   +   V VGN ++YTL  GA
Sbjct: 155 KHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGA 214

Query: 222 NERRWGKMKDRLQTVIESFKISNV 245
           NERRW K+K +LQ V +S KI  +
Sbjct: 215 NERRWRKVKKQLQVVADSLKILQI 238

Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex. May be a subunit of this complex.

Arabidopsis thaliana (taxid: 3702)

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 33/222 (14%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
           + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query: 112 GWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD---IRDFGPPQEVAETLIKKFLAP- 167
            W +V   G D  F+D +   E++SV        +   + D G P+EV + +++++L   
Sbjct: 126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEF 185

Query: 168 -------PTQKTKIIAASENDVDGKAYYAFEFTAQA-----------------PNYIRHA 203
                    Q   +  +S    DGK YY  E   ++                   + R  
Sbjct: 186 MSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRY 245

Query: 204 LGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV 245
           L V+ V N + Y++     E+ + + +  L+ V++SF++  +
Sbjct: 246 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

Arabidopsis thaliana (taxid: 3702)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 34/232 (14%)

Query: 43  LIVKAEHASMASSANSLDKCGRRQMI-------AVGV-IAPWVSLVNQTPPSFA-AESNK 93
           LI +A+ +S  +  NS     RR  +       AVG  IAP  +   +    F  A++N 
Sbjct: 36  LICRAQKSS-DTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNT 94

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            FL  T   DG++ + P  W   +EV   GQ   ++D  +   +VSV + PT K+ I D+
Sbjct: 95  DFLPYTG--DGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDY 152

Query: 151 GPPQEVAET---LIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF--- 192
           G P+E   T   L+ K            F         I+  S   V GK YY       
Sbjct: 153 GTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTR 212

Query: 193 TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
           TA      +H +   TV +GK Y     A ++RW K  K  +++   SF ++
Sbjct: 213 TADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 23/160 (14%)

Query: 90  ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
           ++N  F +VT   DG+  + P  W   +EV   GQ   ++D  +   +V V + PT K+ 
Sbjct: 92  KTNTDFQTVTG--DGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKS 149

Query: 147 IRDFGPPQE--------------VAETLIKKFLAPPTQKT-KIIAASENDVDGKAYYAFE 191
           I+D+G P++                +T+ +    P   +T  I+  S   V GK YY+  
Sbjct: 150 IKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIH 209

Query: 192 F---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK 228
               TA      +H L   TV +GK Y     A ++RW K
Sbjct: 210 VLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFK 249

May be involved in the regulation of photosystem II.

Narcissus pseudonarcissus (taxid: 39639)

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 23/160 (14%)

Query: 90  ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
           +SN  +L  +   DG+    P  W   +E    GQ   ++D  +   ++SV + PT K+ 
Sbjct: 90  KSNTDYLPYSG--DGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKS 147

Query: 147 IRDFGPPQEV---AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYY--- 188
           I+DFG P+E     + L+ K            F         I+ A+ ++V+GK YY   
Sbjct: 148 IKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVS 207

Query: 189 AFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK 228
               TA      +H L   TV +GK Y     A ++RW K
Sbjct: 208 VLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFK 247

May be involved in the regulation of photosystem II.

Cucumis sativus (taxid: 3659)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)

Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
           DG+    P  W   +E+   GQ   ++D  +   ++ V + PT K+ I D+G P+E    
Sbjct: 98  DGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSK 157

Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
            + L+ K            F +       ++ AS   V GK YY       TA      +
Sbjct: 158 VDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGK 217

Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
           H L   TV +GK Y     A ++RW K  K  ++    SF I+
Sbjct: 218 HQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 32/244 (13%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           G++P++    + L+ +A++   A   ++++     + +A+ ++    ++ ++  P+ AA 
Sbjct: 24  GIVPSLKSNQL-LVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAY 82

Query: 91  SNKGFL-----SVTD----KKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVN 138
                +     + TD      DG+    P  W   +EV   GQ   F+D  +   +V V 
Sbjct: 83  GEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVA 142

Query: 139 LIPTGKQDIRDFGPPQEV---AETLIKK------------FLAPPTQKTKIIAASENDVD 183
           + PT K+ I DFG P++     + L+ +            F +       ++  S  +V 
Sbjct: 143 ITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVG 202

Query: 184 GKAYYAFEF---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIES 239
           GK YY       TA      +H L   TV +GK Y     A ++RW K  K  ++    S
Sbjct: 203 GKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATS 262

Query: 240 FKIS 243
           F ++
Sbjct: 263 FSLA 266

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 89/228 (39%), Gaps = 29/228 (12%)

Query: 43  LIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----ESNKGFLS 97
           LI +A+    AS+A    +     +I    I   VS  +      A      + N  FL 
Sbjct: 33  LICRAQKQDDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLP 92

Query: 98  VTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQ 154
                DG+    P  W   +EV   GQ   ++D  +   ++ V + PT K+ I D+G P+
Sbjct: 93  YNG--DGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150

Query: 155 EV---AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQA 196
           E     + L+ K            F +       ++ AS   V GK YY       TA  
Sbjct: 151 EFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADG 210

Query: 197 PNYIRHALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
               +H L   TV +GK Y     A ++RW K  K  ++    SF I+
Sbjct: 211 DEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258

May be involved in the regulation of photosystem II.

Solanum lycopersicum (taxid: 4081)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)

Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
           DG+    P  W   +EV   GQ   F+D  +   +V V + PT K+ I DFG P++    
Sbjct: 103 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 162

Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
            + L+ +            F +       ++  S  +V GK YY       TA      +
Sbjct: 163 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGK 222

Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
           H L   TV +GK Y     A ++RW K  K  ++    SF ++
Sbjct: 223 HQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224109588	243	predicted protein [Populus trichocarpa]	0.987	0.995	0.715	6e-97
255582368	242	Thylakoid lumenal 25.6 kDa protein, chlo	0.987	1.0	0.689	6e-96
225449633	238	PREDICTED: putative oxygen evolving enha	0.971	1.0	0.697	1e-94
388493196	240	unknown [Lotus japonicus]	0.971	0.991	0.688	4e-90
356568959	236	PREDICTED: uncharacterized protein LOC10	0.963	1.0	0.677	1e-86
449464194	236	PREDICTED: psbP-like protein 1, chloropl	0.946	0.983	0.646	2e-86
356499671	232	PREDICTED: psbP-like protein 1, chloropl	0.946	1.0	0.677	3e-84
388495618	237	unknown [Medicago truncatula]	0.967	1.0	0.636	1e-83
297820294	229	photosystem II reaction center PsbP fami	0.840	0.899	0.713	3e-83
15233245	230	PsbP-like protein 1 [Arabidopsis thalian	0.865	0.921	0.690	4e-83

>gi|224109588|ref|XP_002315246.1| predicted protein [Populus trichocarpa] gi|222864286|gb|EEF01417.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 176/246 (71%), Positives = 206/246 (83%), Gaps = 4/246 (1%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLG-VQKYGGVLPAVCRRGISLIVKAEHASMASSANSL 59
           MASLQ+SPS  ++ T    SLPQ+G  QK  G+L + CRRG+S +V+AE +S  S++ S 
Sbjct: 1   MASLQNSPS--VYHTLSPYSLPQVGGAQKNHGML-SFCRRGLSFLVRAEQSSPNSTSLSQ 57

Query: 60  DKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE 119
            + GRR++IAV VIAPWVS+VNQTPPSFAAES KGFL VTDKKDGYSF+YPFGWQEV+IE
Sbjct: 58  VRFGRRELIAVSVIAPWVSMVNQTPPSFAAESKKGFLLVTDKKDGYSFLYPFGWQEVVIE 117

Query: 120 GQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           GQDKVFKDVIEPLES+SVN+IPT KQDIRDFGPPQ+VAETLIKK LAPP+QKTK+I A E
Sbjct: 118 GQDKVFKDVIEPLESISVNVIPTVKQDIRDFGPPQQVAETLIKKVLAPPSQKTKLIEAKE 177

Query: 180 NDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIES 239
           +  DGK YY FEF AQAPN+ RHAL  + +GNGKFYTLTTGANERRW KMKD+LQ VI+S
Sbjct: 178 HGADGKIYYTFEFVAQAPNFTRHALSAIAIGNGKFYTLTTGANERRWEKMKDKLQMVIDS 237

Query: 240 FKISNV 245
           F+I NV
Sbjct: 238 FEIFNV 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582368|ref|XP_002531973.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223528370|gb|EEF30409.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 200/245 (81%), Gaps = 3/245 (1%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SPS     T   NS PQ+G+Q+Y    P  CR+GIS +V+AEH+    ++ S  
Sbjct: 1   MASLQNSPS--FCYTLSPNSFPQIGLQRYYDSFPC-CRKGISFVVRAEHSLPNLTSLSQV 57

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           + GRRQ++AV ++APWVSLVNQT PSFAAE+ KGFL VTDKKDGYSF+YPFGWQEV IEG
Sbjct: 58  RPGRRQLVAVSLVAPWVSLVNQTSPSFAAETKKGFLLVTDKKDGYSFLYPFGWQEVFIEG 117

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKD+IEPLE+VSV  +PT KQDIRDFGPPQ+VAE LIKK LAPP+QKTK+I ASE+
Sbjct: 118 QDKVFKDIIEPLENVSVTTVPTSKQDIRDFGPPQQVAEVLIKKVLAPPSQKTKLIEASEH 177

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240
           DVDGK YY FEFTA+APNY RHAL  +++GNGKFYTLTTGANERRW KMKD+L  + +SF
Sbjct: 178 DVDGKTYYTFEFTARAPNYTRHALSTISIGNGKFYTLTTGANERRWDKMKDKLHEITDSF 237

Query: 241 KISNV 245
           KI NV
Sbjct: 238 KIFNV 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449633|ref|XP_002284256.1| PREDICTED: putative oxygen evolving enhancer protein [Vitis vinifera] gi|296086290|emb|CBI31731.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/245 (69%), Positives = 200/245 (81%), Gaps = 7/245 (2%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SP+  IH+T F NS  QLG+QK+G      CRRG+SL+V+AE  S   + N  D
Sbjct: 1   MASLQNSPA--IHRTLFPNSFSQLGLQKHGQF--RCCRRGVSLLVRAEQVS---TTNRED 53

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             GRRQ++AVG I  WVSLVNQT  SFAAE+ KGFL+V DKKDGYSF+YPFGWQEV+I+G
Sbjct: 54  GPGRRQVLAVGAIGSWVSLVNQTSISFAAETKKGFLAVMDKKDGYSFLYPFGWQEVVIDG 113

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLESVSVN+IPT KQDIR+ G PQEVAE LIKK LAPP+QKTK++ A E+
Sbjct: 114 QDKVFKDVIEPLESVSVNMIPTVKQDIRELGSPQEVAEALIKKVLAPPSQKTKLVEAVEH 173

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240
           DVDGKAYY FEFT QA N+ RHAL  +T+GNGKFYT+TTGANERRW KMKD+L TVI+SF
Sbjct: 174 DVDGKAYYTFEFTVQAANFTRHALSAITIGNGKFYTVTTGANERRWEKMKDKLHTVIDSF 233

Query: 241 KISNV 245
           +I NV
Sbjct: 234 QIFNV 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493196|gb|AFK34664.1| unknown [Lotus japonicus]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 195/247 (78%), Gaps = 9/247 (3%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSAN--S 58
           M SLQ+SP+  +H+T FLNS PQ    K+G    +  R GIS  VKA H   ASSA   S
Sbjct: 1   MVSLQNSPT--LHRTLFLNSFPQ----KHGASR-SPRREGISFTVKAAHEPSASSAGFPS 53

Query: 59  LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
            D+ GRR++IA+G  AP V L +Q   SFAAE+ KGFL VTD+KDGY+F+YPFGWQEV I
Sbjct: 54  QDRPGRREVIAIGTTAPLVFLFSQNSSSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSI 113

Query: 119 EGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAAS 178
           EGQDKVFKDVIEPLESVSVN+IPTGKQ+I++FGPPQ+V ETLIK+ LAPP QKTKII A+
Sbjct: 114 EGQDKVFKDVIEPLESVSVNIIPTGKQNIKEFGPPQQVGETLIKRVLAPPNQKTKIIEAT 173

Query: 179 ENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIE 238
           E DVDGK YY FEF AQAPNY RHAL  V+V NGKFYTLTTGANERRW KMK+RLQTVIE
Sbjct: 174 EQDVDGKTYYRFEFIAQAPNYTRHALSTVSVSNGKFYTLTTGANERRWDKMKERLQTVIE 233

Query: 239 SFKISNV 245
            F+ISNV
Sbjct: 234 FFQISNV 240

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568959|ref|XP_003552675.1| PREDICTED: uncharacterized protein LOC100305918 [Glycine max]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 186/245 (75%), Gaps = 9/245 (3%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E 
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEQ 171

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240
           DV+GK YY FEF A+APNY RHAL  V++GNGKFYTLTTGANERRW KMKDRLQTVIESF
Sbjct: 172 DVEGKKYYQFEFIAKAPNYTRHALSTVSIGNGKFYTLTTGANERRWDKMKDRLQTVIESF 231

Query: 241 KISNV 245
           KI +V
Sbjct: 232 KIFDV 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464194|ref|XP_004149814.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus] gi|449519084|ref|XP_004166565.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/249 (64%), Positives = 191/249 (76%), Gaps = 17/249 (6%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMAS----SA 56
           MASLQ+S         F+NSLPQ    K  G     CR G+S +V+AE A  +S    + 
Sbjct: 1   MASLQNSL--------FINSLPQ----KLHGRF-VCCRAGVSFLVRAEQAHGSSINGHAC 47

Query: 57  NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEV 116
           +S D+ GRRQ+++      W+SL +    SFAAE+ KGFLSV+DKKDGYSFVYPFGWQEV
Sbjct: 48  SSEDRLGRRQLLSGSAFITWISLADMNSMSFAAETKKGFLSVSDKKDGYSFVYPFGWQEV 107

Query: 117 IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA 176
           +I+GQDKVFKDVIEPLE+VSVNLIPT K+DIRDFGPPQ+VAETLIKK LAP  QKTK+I 
Sbjct: 108 VIDGQDKVFKDVIEPLENVSVNLIPTSKEDIRDFGPPQQVAETLIKKVLAPSNQKTKLIE 167

Query: 177 ASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTV 236
           ASE+DV+GKAYY FEF AQAPNY RHAL  + V NGKFYTLTTGANERRW KMKD+L+TV
Sbjct: 168 ASEHDVNGKAYYTFEFVAQAPNYTRHALSTIAVANGKFYTLTTGANERRWEKMKDKLRTV 227

Query: 237 IESFKISNV 245
           ++SF IS+V
Sbjct: 228 VDSFTISSV 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499671|ref|XP_003518660.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Glycine max]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 186/245 (75%), Gaps = 13/245 (5%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M+ LQ+SP+  +H +SF    PQ  V +      +  R  IS IVKA     AS   S D
Sbjct: 1   MSLLQNSPT--LHNSSF----PQKHVTR------SSRRDAISFIVKAVQEPSAS-LTSQD 47

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IAVG  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 48  RQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 107

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E 
Sbjct: 108 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEL 167

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240
           DV+GK YY FEF AQAPNY RHAL  V++GNGKFYTLTTGANERRW KMKDRLQTVIESF
Sbjct: 168 DVEGKKYYQFEFIAQAPNYTRHALSTVSIGNGKFYTLTTGANERRWVKMKDRLQTVIESF 227

Query: 241 KISNV 245
           KI +V
Sbjct: 228 KIFDV 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495618|gb|AFK35875.1| unknown [Medicago truncatula]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 181/245 (73%), Gaps = 8/245 (3%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ SP+  +H+T F NS PQ              R GIS IVKAE    +SS     
Sbjct: 1   MASLQTSPT--LHRTLFQNSFPQKHGSSSSSSSTFRRREGISFIVKAEQELSSSS----- 53

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             GRRQ IA+   AP V L NQ+  SFAA++  GF  V D+KDGY FVYPFGWQEV+IEG
Sbjct: 54  -TGRRQAIAIAATAPLVFLFNQSSISFAADNKSGFQPVVDRKDGYQFVYPFGWQEVVIEG 112

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLE+VSV +IPT KQDI++FG P++VA TLIKK LAPP QKTKII A+E 
Sbjct: 113 QDKVFKDVIEPLENVSVTMIPTSKQDIKEFGSPEQVAATLIKKVLAPPNQKTKIIQATER 172

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240
           ++DGKAYY FEF AQAPNY RHAL  V++GNGKFYTLTTGANERRWGKMKDRL T++ESF
Sbjct: 173 EIDGKAYYQFEFVAQAPNYTRHALSAVSIGNGKFYTLTTGANERRWGKMKDRLNTIVESF 232

Query: 241 KISNV 245
           ++  V
Sbjct: 233 QLFKV 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820294|ref|XP_002878030.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata] gi|297323868|gb|EFH54289.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/206 (71%), Positives = 177/206 (85%)

Query: 38  RRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLS 97
           ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAES KGFL+
Sbjct: 23  KKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLA 82

Query: 98  VTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVA 157
           V+D KD YSF+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNLIPT KQ I++FGPP+++A
Sbjct: 83  VSDNKDAYSFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLIPTSKQTIKEFGPPKQIA 142

Query: 158 ETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTL 217
           ETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV NGKFYTL
Sbjct: 143 ETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGKFYTL 202

Query: 218 TTGANERRWGKMKDRLQTVIESFKIS 243
           TTGANERRW KMKDRL TV++SFKI+
Sbjct: 203 TTGANERRWEKMKDRLHTVVDSFKIT 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233245|ref|NP_191093.1| PsbP-like protein 1 [Arabidopsis thaliana] gi|9297075|sp|P82538.1|PPL1_ARATH RecName: Full=PsbP-like protein 1, chloroplastic; AltName: Full=OEC23-like protein 4; AltName: Full=PsbP-related thylakoid lumenal protein 2; Flags: Precursor gi|16930399|gb|AAL31885.1|AF419553_1 AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|7019666|emb|CAB75767.1| putative protein [Arabidopsis thaliana] gi|20453231|gb|AAM19854.1| AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|21593252|gb|AAM65201.1| unknown [Arabidopsis thaliana] gi|332645848|gb|AEE79369.1| PsbP-like protein 1 [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 147/213 (69%), Positives = 181/213 (84%), Gaps = 1/213 (0%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG 210
           GPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV 
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVF 196

Query: 211 NGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243
           NG FYTLTTGANERRW KMKDRL TV++SFKI+
Sbjct: 197 NGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.934	0.995	0.646	2.9e-80
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.795	0.819	0.389	1.1e-30
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.551	0.470	0.298	6.5e-09
TAIR|locus:2079792	280	AT3G05410 [Arabidopsis thalian	0.444	0.389	0.295	2e-06
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.285	0.266	0.297	4.3e-06
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.742	0.736	0.253	0.00012
TAIR|locus:2828415	232	AT2G28605 [Arabidopsis thalian	0.526	0.556	0.229	0.00029

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 157/243 (64%), Positives = 195/243 (80%)

Query:     1 MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
             MASL+ SPSS I       S+ ++GV      +P+  ++G+S +VKAEH S +SS++  D
Sbjct:     1 MASLKLSPSSPI-------SISKVGV------IPS-SKKGLSFLVKAEHHSSSSSSHLQD 46

Query:    61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             KC RR ++  GV+APW+SL+++ P SFAAES KGFL+V+D KD Y+F+YPFGWQEV+IEG
Sbjct:    47 KCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEG 106

Query:   121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
             QDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++AETLIKK LAPP QKT +I ASE+
Sbjct:   107 QDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEH 166

Query:   181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240
             DVDGK YY FEFT QA NY RHALG +TV NG FYTLTTGANERRW KMKDRL TV++SF
Sbjct:   167 DVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

Query:   241 KIS 243
             KI+
Sbjct:   227 KIT 229

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 79/203 (38%), Positives = 105/203 (51%)

Query:    46 KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDKK 102
             KA+ +       S +   RRQ + VGV     +LV  + P+    A E  K +    D++
Sbjct:    41 KADSSESTYQKGSGNNWKRRQAL-VGV----GTLVATSIPATLLLAEEIPKSYSPFVDRE 95

Query:   103 DGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIK 162
             DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+K
Sbjct:    96 DGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVK 155

Query:   163 KFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGAN 222
                A P Q   I    E   DGK YY FE+  + P Y   +   V VGN ++YTL  GAN
Sbjct:   156 HKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGAN 215

Query:   223 ERRWGKMKDRLQTVIESFKISNV 245
             ERRW K+K +LQ V +S KI  +
Sbjct:   216 ERRWRKVKKQLQVVADSLKILQI 238

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
 Identities = 45/151 (29%), Positives = 74/151 (49%)

Query:    54 SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
             + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct:    69 TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query:   112 GWQEVIIEGQDKVFKDVIEPLESVSVNLI-PTGKQ--DIRDFGPPQEVAETLIKKFLAP- 167
              W +V   G D  F+D +   E++SV    P+      + D G P+EV + +++++L   
Sbjct:   126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEF 185

Query:   168 -PTQ-----KTKIIAASENDVD-GKAYYAFE 191
               T+     +  I++ S    D GK YY  E
Sbjct:   186 MSTRLGVKRQANILSTSSRVADDGKLYYQVE 216

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

TAIR|locus:2079792 AT3G05410 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 34/115 (29%), Positives = 55/115 (47%)

Query:   134 SVSVNLIPTGKQ-DIRDFGPPQEVAETLIKKFLAPPTQ---KTKIIAAS-ENDVDGKA-Y 187
             +VSV + P      I  FG P+EV E +++       +   K  ++ +S   D +    Y
Sbjct:   164 NVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLKY 223

Query:   188 YAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
             Y  EF  ++P + RH + V    +G+ YTL   A E  W ++K  + T  +SF I
Sbjct:   224 YELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSFNI 278

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query:   174 IIAASENDVDGKAYYAFEF---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK-M 229
             I+ +S  +V GK YY       TA      +H L   TV  GK Y     A ++RW K  
Sbjct:   190 ILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 249

Query:   230 KDRLQTVIESFKIS 243
             +  +++   SF ++
Sbjct:   250 RKFVESAATSFSVA 263

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
 Identities = 51/201 (25%), Positives = 88/201 (43%)

Query:    57 NSLDKCG-RRQMIAVGVIAPWVSLVNQTPPSFA-AESNKGFLSVTDKKDGYSFVYPFGWQ 114
             +S D  G +R+ + + + +    L     P+FA   +++ F   TD+ + +    P  WQ
Sbjct:    48 SSRDHVGMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQ 107

Query:   115 EVIIEGQDKVFKDVIE--PLES----VSVNLIPTGKQDIR--DFGPPQEVAETLIKKFLA 166
               + + +   FK +    P E+    VS+ +   G    R   FG  +  AETL+   L 
Sbjct:   108 --VGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSG-LD 164

Query:   167 PPTQKTKIIAASENDVDG-KAYYAFEFTAQAPNYIR-H---ALGVVTVG-NGKFYTLTTG 220
                QK   + A   D    K +Y  E+T Q P   R H   A+G+ T G   + YT+T  
Sbjct:   165 RSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQ 224

Query:   221 ANERRWGKMKDRLQTVIESFK 241
               +    +   ++Q  ++SF+
Sbjct:   225 FTDEESAEQSSKIQKTVKSFR 245

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

TAIR|locus:2828415 AT2G28605 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
 Identities = 30/131 (22%), Positives = 61/131 (46%)

Query:    89 AESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIR 148
             A+S +     TD  +G++ + P  + +V   G + +F+++     ++ V + P   + + 
Sbjct:    69 AKSMEELQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNNIGVVVSPVRIKSLD 128

Query:   149 DFGPPQEVAETLIK-KFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNY-IRHALGV 206
              FG PQ VA+ LI  +     T++ ++++  E    G+  Y FE+   +    I+     
Sbjct:   129 QFGSPQFVADKLINAEKRKESTKEAEVVSVGERAGLGQQVYEFEYKIDSTRGGIKRVFSA 188

Query:   207 VTVGNGKFYTL 217
               V + K Y L
Sbjct:   189 AFVSSNKLYLL 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       245   0.00099  113 3  11 22  0.46    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.63u 0.11s 20.74t   Elapsed:  00:00:01
  Total cpu time:  20.63u 0.11s 20.74t   Elapsed:  00:00:01
  Start:  Sat May 11 10:43:45 2013   End:  Sat May 11 10:43:46 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82538	PPL1_ARATH	No assigned EC number	0.6901	0.8653	0.9217	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam01789	163	pfam01789, PsbP, PsbP	1e-65
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	3e-11
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	1e-09
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	2e-09

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  200 bits (512), Expect = 1e-65
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 5/162 (3%)

Query: 86  SFAAESNKGFLSVTDKKDGYSFVYPFGW-QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
           +  A++N GF +  D  DGY F+YP GW +EV+ +G D VF D+IE  E+VSV + P  K
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDK 60

Query: 145 Q-DIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAPNYI- 200
           +  + D G P+EV E L++  LAP    ++ +++ ASE +VDGK YY  E+  +  +   
Sbjct: 61  KKSLEDLGSPEEVGERLLRGVLAPEGSGREAELLEASEREVDGKTYYDLEYLVRLADGGD 120

Query: 201 RHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
           RH L  VTV  GK YTL    NE+RW K+K   + V++SF +
Sbjct: 121 RHELATVTVDRGKLYTLAAQTNEKRWFKVKKLFERVVDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 37/230 (16%)

Query: 46  KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----------ESNKG 94
           +       +         RR   A+ ++A   +   +  P+ AA           ++N G
Sbjct: 34  RPSQVVCRAQEEDNSAVSRR--AALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTG 91

Query: 95  FLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFG 151
           FL      DG+  + P  W   +E    GQ   F+D  +   ++SV + PT K+ I D+G
Sbjct: 92  FLPYNG--DGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYG 149

Query: 152 PPQEVAET---LIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---T 193
            P+E       L+ K            F A       ++ +S  +V GK YY       T
Sbjct: 150 SPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRT 209

Query: 194 AQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDR-LQTVIESFKI 242
           A      +H L   TV +GK Y     A ++RW K   + ++    SF +
Sbjct: 210 ADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV 259

Length = 260

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 29/217 (13%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGW 113
           + A  +   GRR+ + +G++   + +V++     A  S   F    D  DGYSF YP  W
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNW 127

Query: 114 QEVIIEGQDKVFKDVIEPLESVSVNL-IPTGKQ--DIRDFGPPQEVAETLIKKFLAP--- 167
            +V   G D  F+D +   E++SV    P+  +   + D G P+EV + +++++L     
Sbjct: 128 IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMS 187

Query: 168 ----PTQKTKIIAASENDV-DGKAYYAFEFTAQA----------PN-------YIRHALG 205
                 ++  I++ S     DGK YY  E   ++          P        + R  L 
Sbjct: 188 TRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLA 247

Query: 206 VVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
           V+ V N + Y++     E+ + + +  L+ V++SF++
Sbjct: 248 VLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

Length = 286

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 30/156 (19%)

Query: 105 YSFVYPFGWQEVII------------------EGQDKVFKDVIEPLESVSVNLIPTGKQD 146
           YSF  P GW+EV +                  EG+ KV   V+ P+   + NL       
Sbjct: 115 YSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKV---VVAPVLRFADNL--GDNAT 169

Query: 147 IRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGV 206
           I + GPP++V      + +  P ++ K+++    +  G+ YY FE     P    H L  
Sbjct: 170 IEEIGPPEKVISGFGPELIGEPVEEGKVLSMEVAEHSGRTYYQFEL----PP---HTLVT 222

Query: 207 VTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
            T    + Y  +  AN  +W +    L+ + +SF++
Sbjct: 223 ATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRV 258

Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.96
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	98.74
PRK11615	185	hypothetical protein; Provisional	97.26
COG5435	147	Uncharacterized conserved protein [Function unknow	97.21
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	95.93
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	95.39
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	94.08
COG4784	479	Putative Zn-dependent protease [General function p	91.31
PF10518	26	TAT_signal: TAT (twin-arginine translocation) path	84.68

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1.2e-46  Score=327.07  Aligned_cols=183  Identities=27%  Similarity=0.508  Sum_probs=163.3

Q ss_pred             CCcchhHHHHHHHH-HHHhhhcCCCCcCccccccCCceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEE
Q 025977           60 DKCGRRQMIAVGVI-APWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVN  138 (245)
Q Consensus        60 ~~~~RR~~l~~~~~-aa~~~~~~~~~~a~A~~~~~gf~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~  138 (245)
                      ..++||++|+.++. +.+.......++|+|+  +.||+.|.|..|||+|.||.||+++...|+|++|+|+++.++||+|+
T Consensus        75 ~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV~  152 (286)
T PLN00059         75 CAVGRRKSMMMGLLMSGLIVSEANLPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVE  152 (286)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHhhcCchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEEE
Confidence            57899999876653 4444444555688886  45899999999999999999999999999999999999999999999


Q ss_pred             EecCC---CCCCcccCChHHHHHHHHHhhcCCC-------CCceEEEEeeeec-cCCceeEEEEEEEeCC----------
Q 025977          139 LIPTG---KQDIRDFGPPQEVAETLIKKFLAPP-------TQKTKIIAASEND-VDGKAYYAFEFTAQAP----------  197 (245)
Q Consensus       139 v~P~~---~~si~d~Gspeeva~~ll~~~~~~~-------~~~~~ll~a~~~~-~~G~~YY~~Ey~~~~~----------  197 (245)
                      |+|++   +++|+|||+|++||++|++++++++       +++++|+++.+|+ .||++||++||.++.+          
T Consensus       153 ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~  232 (286)
T PLN00059        153 FSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMP  232 (286)
T ss_pred             EecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccc
Confidence            99875   6999999999999999999998753       4799999999885 4999999999998773          


Q ss_pred             -------CCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977          198 -------NYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN  244 (245)
Q Consensus       198 -------~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~  244 (245)
                             +|.||.|++++|.|||||||++|+||++|+++++.|++|++||+|.+
T Consensus       233 qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~  286 (286)
T PLN00059        233 QDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK  286 (286)
T ss_pred             cccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence                   67999999999999999999999999999999999999999999975

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3e-44  Score=313.14  Aligned_cols=182  Identities=27%  Similarity=0.451  Sum_probs=156.3

Q ss_pred             cCCcchhHHHHHHHHH-HHhhhcCCCCcCcccc--------ccCCceeeeeCCCCeEEEccCCce---EEeeecceeEEe
Q 025977           59 LDKCGRRQMIAVGVIA-PWVSLVNQTPPSFAAE--------SNKGFLSVTDKKDGYSFVYPFGWQ---EVIIEGQDKVFK  126 (245)
Q Consensus        59 ~~~~~RR~~l~~~~~a-a~~~~~~~~~~a~A~~--------~~~gf~~y~D~~~gysf~yP~~W~---e~~~~G~~~~f~  126 (245)
                      ...++||.+|++++++ ++++.++|+.+|++++        .+.||.+|.  +|||+|+||.+|+   +..++|++++|+
T Consensus        47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~  124 (260)
T PLN00042         47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFE  124 (260)
T ss_pred             cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEee
Confidence            3557899999877765 4455677888888653        578999997  4999999999998   556789999999


Q ss_pred             cCCCCcceeEEEEecCCCCCCcccCChHHHHHH----HHHhhcCCC-----C------CceEEEEeeeeccCCceeEEEE
Q 025977          127 DVIEPLESVSVNLIPTGKQDIRDFGPPQEVAET----LIKKFLAPP-----T------QKTKIIAASENDVDGKAYYAFE  191 (245)
Q Consensus       127 d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~----ll~~~~~~~-----~------~~~~ll~a~~~~~~G~~YY~~E  191 (245)
                      |+++.++||+|+|+|+++++|+|||+|||++++    |.++++.++     +      ..++|+++++++.||++||+||
T Consensus       125 D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE  204 (260)
T PLN00042        125 DNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLS  204 (260)
T ss_pred             ccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEE
Confidence            999999999999999999999999999996555    456666543     1      1568999999999999999999


Q ss_pred             EEEeCC---CCccEEEEEEEEECCEEEEEEEEecchhhhhh-hHHHHHhhcccee
Q 025977          192 FTAQAP---NYIRHALGVVTVGNGKFYTLTTGANERRWGKM-KDRLQTVIESFKI  242 (245)
Q Consensus       192 y~~~~~---~~~rH~l~~~~v~~grLYtl~~qape~~w~k~-~~~l~~iv~SF~v  242 (245)
                      |.++.+   +++||+|++++|.|||||||++|+||+||.|+ ++.|+.|++||+|
T Consensus       205 ~~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        205 VLTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             EEEecCCCCCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence            998755   58999999999999999999999999999998 5579999999987

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=2.7e-41  Score=283.94  Aligned_cols=160  Identities=49%  Similarity=0.843  Sum_probs=141.6

Q ss_pred             CcCccccccCCceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCC-CCcccCChHHHHHHHHH
Q 025977           84 PPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ-DIRDFGPPQEVAETLIK  162 (245)
Q Consensus        84 ~~a~A~~~~~gf~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~-si~d~Gspeeva~~ll~  162 (245)
                      ..+.+++++.||++|.|+.+||+|.||.+|+++.+.|++++|+|+.+..+||+|+|.|+... +|++||+|++++++|++
T Consensus        12 ~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~   91 (175)
T PF01789_consen   12 NVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLN   91 (175)
T ss_dssp             ----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHH
T ss_pred             hhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhh
Confidence            33444567789999999999999999999999998999999999999999999999999754 99999999999999999


Q ss_pred             hhcCCCC--CceEEEEeeeeccCCceeEEEEEEEeCCC-CccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhcc
Q 025977          163 KFLAPPT--QKTKIIAASENDVDGKAYYAFEFTAQAPN-YIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIES  239 (245)
Q Consensus       163 ~~~~~~~--~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~-~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~S  239 (245)
                      ..+++++  +.++|+++.+++.+|++||+|||+++.++ +.||.|++++++||+||+|++|++|++|+++++.|++|++|
T Consensus        92 ~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~a~e~~w~k~~~~l~~iv~S  171 (175)
T PF01789_consen   92 GELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQAPESRWDKVEPKLRKIVDS  171 (175)
T ss_dssp             HCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEHHHHHTCHHHHHHHHHC
T ss_pred             hhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEEcCHHHHHHHHHHHHHHHhc
Confidence            8776555  78999999999999999999999999887 89999999999999999999999999999999999999999


Q ss_pred             ceee
Q 025977          240 FKIS  243 (245)
Q Consensus       240 F~v~  243 (245)
                      |+|.
T Consensus       172 F~v~  175 (175)
T PF01789_consen  172 FRVY  175 (175)
T ss_dssp             -EE-
T ss_pred             EEeC
Confidence            9983

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=6.2e-39  Score=279.08  Aligned_cols=182  Identities=19%  Similarity=0.366  Sum_probs=150.3

Q ss_pred             ccCCcchhHHHHHHHHHHHhhhcCCCCcCccc-----------cccCCceeeee-----------CCCCeEEEccCCceE
Q 025977           58 SLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----------ESNKGFLSVTD-----------KKDGYSFVYPFGWQE  115 (245)
Q Consensus        58 ~~~~~~RR~~l~~~~~aa~~~~~~~~~~a~A~-----------~~~~gf~~y~D-----------~~~gysf~yP~~W~e  115 (245)
                      ......||++|..++.+.+++... ..++.|.           ....||-.|.-           ...||+|.||.+|++
T Consensus        39 ~~~~~~rr~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~  117 (263)
T PLN00067         39 AAVVIHRRELLLGLALAPLILIAP-EPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQ  117 (263)
T ss_pred             ccchhHHHHHHhhhhhhhhhhccC-CchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcC
Confidence            345578999986555544444332 1233331           12246776652           234899999999998


Q ss_pred             Eeee----c-----------ceeEEecCCCCcceeEEEEecC------CCCCCcccCChHHHHHHHHHhhcCCCCCceEE
Q 025977          116 VIIE----G-----------QDKVFKDVIEPLESVSVNLIPT------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTKI  174 (245)
Q Consensus       116 ~~~~----G-----------~~~~f~d~~~~~~nVsV~v~P~------~~~si~d~Gspeeva~~ll~~~~~~~~~~~~l  174 (245)
                      +.++    |           ++++|+|..  ++||+|+|+|+      ++++|+|||+||+|+++|.+.+++++++..+|
T Consensus       118 v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eL  195 (263)
T PLN00067        118 TRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDEL  195 (263)
T ss_pred             ccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcce
Confidence            8765    4           799999965  56999999997      35899999999999999999988878889999


Q ss_pred             EEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhcccee
Q 025977          175 IAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI  242 (245)
Q Consensus       175 l~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v  242 (245)
                      +++++++.||++||+|||.++.++++||+|+++++++|+||||++|++|+||.|+++.|++|++||+|
T Consensus       196 LeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        196 LETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             EEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999988899999999999999999999999999999999999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=9e-38  Score=274.37  Aligned_cols=183  Identities=21%  Similarity=0.453  Sum_probs=148.8

Q ss_pred             ccCccCCcchhHHHHHHHHHHHhhhcCCCCcCc--------------cccccCCceeeeeCC-------------CCeEE
Q 025977           55 SANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSF--------------AAESNKGFLSVTDKK-------------DGYSF  107 (245)
Q Consensus        55 ~~~~~~~~~RR~~l~~~~~aa~~~~~~~~~~a~--------------A~~~~~gf~~y~D~~-------------~gysf  107 (245)
                      +...+..++||.+|+.++++++...+.-..++.              .+.+..||++|..++             .+|+|
T Consensus        38 ~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F  117 (262)
T PLN00066         38 TEDVATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSF  117 (262)
T ss_pred             hhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEE
Confidence            345567789999998776653322222112222              223457899998653             37999


Q ss_pred             EccCCceEEeee-----cceeEEecCCCCcceeEEEEecC--------CCCCCcccCChHHHHHHHHHhhcCCCCCceEE
Q 025977          108 VYPFGWQEVIIE-----GQDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTKI  174 (245)
Q Consensus       108 ~yP~~W~e~~~~-----G~~~~f~d~~~~~~nVsV~v~P~--------~~~si~d~Gspeeva~~ll~~~~~~~~~~~~l  174 (245)
                      .||.+|+|+.++     |.++.+++..+..+||+|+|.|+        ++++|+|||+||+|++.|++++++++.++++|
T Consensus       118 ~yP~GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eL  197 (262)
T PLN00066        118 KVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKV  197 (262)
T ss_pred             ECCCCCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccce
Confidence            999999998876     54455554446778899999997        46899999999999999999988877789999


Q ss_pred             EEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977          175 IAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN  244 (245)
Q Consensus       175 l~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~  244 (245)
                      +++++++.+|++||+|||       .||+|+++++.+||||+|++|+||+||++.++.|++|++||+|+.
T Consensus       198 l~a~~re~dGktYY~~E~-------~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~~  260 (262)
T PLN00066        198 LSMEVAEHSGRTYYQFEL-------PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT  260 (262)
T ss_pred             eEeeeeecCCcEEEEEEE-------eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeeec
Confidence            999999999999999999       489999999999999999999999999999999999999999864

>PLN03152 hypothetical protein; Provisional

Probab=99.96  E-value=1.9e-28  Score=208.25  Aligned_cols=168  Identities=26%  Similarity=0.408  Sum_probs=127.5

Q ss_pred             chhHHHHHHHHHHHhh--hcCCCCcCcccc------------ccCCceeeeeCCCCeEEEccCCceEEe----e-ec---
Q 025977           63 GRRQMIAVGVIAPWVS--LVNQTPPSFAAE------------SNKGFLSVTDKKDGYSFVYPFGWQEVI----I-EG---  120 (245)
Q Consensus        63 ~RR~~l~~~~~aa~~~--~~~~~~~a~A~~------------~~~gf~~y~D~~~gysf~yP~~W~e~~----~-~G---  120 (245)
                      +||+++.-.+++.+.+  .-.+..+++|+.            +...|-.|.  ++||++.||.+++.+.    + .|   
T Consensus        32 ~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~  109 (241)
T PLN03152         32 SRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSL  109 (241)
T ss_pred             cccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcccccce
Confidence            4888875444332222  223445556642            345677775  8999999999997432    1 12   


Q ss_pred             ---------ceeEEecCCCCcceeEEEEecCC--------CCCCcccCChHHHHHHHHHhhcCCCC---CceEEEEeeee
Q 025977          121 ---------QDKVFKDVIEPLESVSVNLIPTG--------KQDIRDFGPPQEVAETLIKKFLAPPT---QKTKIIAASEN  180 (245)
Q Consensus       121 ---------~~~~f~d~~~~~~nVsV~v~P~~--------~~si~d~Gspeeva~~ll~~~~~~~~---~~~~ll~a~~~  180 (245)
                               -..+|..+ |..+||||+|.|.+        .++|.|||+|+||++.+++     ++   +.++.++.++ 
T Consensus       110 yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP-----~g~~~~saR~iel~~-  182 (241)
T PLN03152        110 YGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVP-----GGATLYSARTIKVKE-  182 (241)
T ss_pred             ecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhCC-----Ccccccccceeeeee-
Confidence                     12556554 56789999999963        5899999999999966553     33   2456666644 


Q ss_pred             ccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977          181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS  243 (245)
Q Consensus       181 ~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~  243 (245)
                      +.+|++||+|||.++    .||.|++++|.+||||||+++++|+||+|++++|+++++||.|+
T Consensus       183 E~dGKtYY~lEy~v~----~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        183 EEGIRTYYFYEFGRD----EQHVALVATVNSGKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             ecCCceeEEEEEEeC----CcEEEEEEEEcCCeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            889999999999975    89999999999999999999999999999999999999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=98.74  E-value=8.3e-07  Score=70.70  Aligned_cols=127  Identities=13%  Similarity=0.148  Sum_probs=88.3

Q ss_pred             EEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEEeeeeccCCc
Q 025977          106 SFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGK  185 (245)
Q Consensus       106 sf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a~~~~~~G~  185 (245)
                      +|..|.+|+....  +...+.|......++.|+-.+.+     +=.+.++..++.+++. +......++++....+.+|.
T Consensus         3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~-----~g~tl~~~~~~q~~~l-~~~l~~~~~~~~~~~~l~~~   74 (130)
T PF08786_consen    3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLP-----DGETLEDYLQRQLAQL-RKQLPGFQLVERQPITLGGR   74 (130)
T ss_dssp             EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE--------TTS-HHHHHHHHHHHH-HCCSTT-EEEEEEEEEETTE
T ss_pred             eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCC-----CCCCHHHHHHHHHHHH-HhhCCCcEEEeeEEEEeCCC
Confidence            6788999997643  23444554433344444444432     1125566677665543 22445678888887789999


Q ss_pred             eeEEEEEEEeCCCCccEEEEEEEEEC-CEEEEEEEEecchhhhhhhHHHHHhhccc
Q 025977          186 AYYAFEFTAQAPNYIRHALGVVTVGN-GKFYTLTTGANERRWGKMKDRLQTVIESF  240 (245)
Q Consensus       186 ~YY~~Ey~~~~~~~~rH~l~~~~v~~-grLYtl~~qape~~w~k~~~~l~~iv~SF  240 (245)
                      +.+.++|++..++..-|...++...+ +++|+|+.+++....++.++.++.|++||
T Consensus        75 ~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   75 PARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             CeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            99999999998777779998888888 89999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PRK11615 hypothetical protein; Provisional

Probab=97.26  E-value=0.028  Score=47.31  Aligned_cols=133  Identities=11%  Similarity=0.141  Sum_probs=86.6

Q ss_pred             CCCeEEEccCCceEEee-ec----ceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEE
Q 025977          102 KDGYSFVYPFGWQEVII-EG----QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA  176 (245)
Q Consensus       102 ~~gysf~yP~~W~e~~~-~G----~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~  176 (245)
                      +.+++|.+|.|+.+... -|    ..-+|.|..+  ..+-|++ +.+ .+-++   .+..+.+|..+- +......+++.
T Consensus        47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~tg--~kavIVi-~gD-~~~~~---Ld~la~rl~~qQ-r~rdp~lqvvs  118 (185)
T PRK11615         47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADATG--QKAVIVI-LGD-DTNED---LAVLAKRLEDQQ-RSRDPQLQVVT  118 (185)
T ss_pred             ccEEEEEcCCccccccccccccccceEEEEcCCC--CEEEEEE-eCC-CChhh---HHHHHHHHHHHH-HhhCcCceeec
Confidence            57899999999985432 12    3456777544  2332222 221 11122   355566666442 21234557777


Q ss_pred             eeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhcccee
Q 025977          177 ASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI  242 (245)
Q Consensus       177 a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v  242 (245)
                      .+..+++|++..+.+=++...+..--.=.+++..|+||-+|-+..|.+.-.+....-+.|+++.++
T Consensus       119 nK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~ae~ii~tl~~  184 (185)
T PRK11615        119 NKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTTAENIINTLVI  184 (185)
T ss_pred             ceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHHHHHHHhheec
Confidence            777788999999999887653222233345566799999999999998888888888999988764

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.015  Score=47.47  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             EEEccCCceEEeeecceeEEecCCCCcceeEEEEe--cCC-CCCCcccCChHHHHHHHHHhhcCCCCCceEEEEeeeecc
Q 025977          106 SFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLI--PTG-KQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDV  182 (245)
Q Consensus       106 sf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~--P~~-~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a~~~~~  182 (245)
                      +|..|+.|+...+    -.|.........++.+|+  |.. ...+      .++.++.+... ...-...++..-.+.++
T Consensus        10 ~l~lP~~w~DrSv----Nvf~~~~~gt~~~sfvIsRd~~~~g~~~------~~y~~rql~~l-~k~Lpgy~~~~~~e~~v   78 (147)
T COG5435          10 TLELPAAWQDRSV----NVFVSGDNGTSGFSFVISRDPLEPGDTF------PEYVQRQLALL-RKQLPGYELHHRREIEV   78 (147)
T ss_pred             eEcCcchhccceE----EEEEecCCCcceeEEEEecCCCCCCCcH------HHHHHHHHHHH-HhhCCCeEEeecccccc
Confidence            6889999996543    123322222334555664  221 2222      34444433221 11122455665556678


Q ss_pred             CCceeEEEEEEEeCC--CCcc-EEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977          183 DGKAYYAFEFTAQAP--NYIR-HALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS  243 (245)
Q Consensus       183 ~G~~YY~~Ey~~~~~--~~~r-H~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~  243 (245)
                      +|...-..+|.+..+  +++| +.+.++.-.++++-+++++++-.-=++.++....++.||.+.
T Consensus        79 ~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p~  142 (147)
T COG5435          79 GGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVPN  142 (147)
T ss_pred             CccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Confidence            888777788887774  4455 555664445778999999999998889999999999999864

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=95.93  E-value=0.19  Score=42.50  Aligned_cols=133  Identities=19%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             CeEEEccCCceEEeee---cce--eEEecC-CCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEEe
Q 025977          104 GYSFVYPFGWQEVIIE---GQD--KVFKDV-IEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAA  177 (245)
Q Consensus       104 gysf~yP~~W~e~~~~---G~~--~~f~d~-~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a  177 (245)
                      .-++-.|.||+...-+   ..-  +..... .+..-|+.|++....    .+| +|+|+++.=-.+...  ....+.++.
T Consensus        32 ~v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~----G~~-Dp~e~l~~a~~d~~~--l~g~~~~~~  104 (175)
T PF10738_consen   32 TVSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLT----GDF-DPAEALEHAPADAQN--LPGFRELDG  104 (175)
T ss_pred             EEeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEecc----CCC-CHHHHHHhchhhHhh--CcCcccccC
Confidence            3677778899854322   111  112211 112345666665442    456 688887642112111  112345556


Q ss_pred             eeeccCCceeEEEEEEEeCCCCccEEEEEEEE--ECCE--EEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977          178 SENDVDGKAYYAFEFTAQAPNYIRHALGVVTV--GNGK--FYTLTTGANERRWGKMKDRLQTVIESFKIS  243 (245)
Q Consensus       178 ~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v--~~gr--LYtl~~qape~~w~k~~~~l~~iv~SF~v~  243 (245)
                      +.-+.+|-+-+.+|-+.+.++..+|......|  .++.  |-.|++++.+.+=....+..+.|.+.|+|.
T Consensus       105 s~~~~~GfpS~~i~GtY~~~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~It  174 (175)
T PF10738_consen  105 SPSDFSGFPSSQIEGTYDKDGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTIT  174 (175)
T ss_pred             CccccCCCceeEEEEEEeeCCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEec
Confidence            55678898899999776665555665555444  3444  556788888888888899999999999985

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=95.39  E-value=1.2  Score=36.20  Aligned_cols=130  Identities=13%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             eeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEE
Q 025977           96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKII  175 (245)
Q Consensus        96 ~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll  175 (245)
                      +.|..+..=|++.||.+|.|.+-.-....|-||..=..|..+..--.     ++-+-..+++..-|++     ...++++
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk~-----~~~~ygk~~i~~EL~e-----n~~a~~v   71 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYKG-----GSAQYGKECIRQELKE-----NPSAKLV   71 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE-------STTHHHHHHHHHHHH------TT-EEE
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEec-----ccccchHHHHHHHHHh-----CCCcceE
Confidence            45666666799999999998762223456778877777776543321     1122234444443433     2234555


Q ss_pred             EeeeeccCCceeEEEEEEEeCC-CCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977          176 AASENDVDGKAYYAFEFTAQAP-NYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN  244 (245)
Q Consensus       176 ~a~~~~~~G~~YY~~Ey~~~~~-~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~  244 (245)
                      .....    .-.|.-|.--+.. .+..|..  ++-.++..|.|..+.+-..   .....+.|+.|.++.+
T Consensus        72 kvg~~----~caYs~E~f~eeg~~YtsH~W--vtg~~~~sfeCSFTv~kg~---~~~~aE~iiasL~vR~  132 (153)
T PF12712_consen   72 KVGNW----ECAYSKEMFQEEGAYYTSHLW--VTGEGDVSFECSFTVPKGE---SVKEAEEIIASLEVRK  132 (153)
T ss_dssp             EETTE----EEEEEEEEEEETTEEEEEEEE--EEEETTEEEEEEEEEETT------HHHHHHHHH-EE--
T ss_pred             EeccE----EEEEEhhhhhccCeeEEEEEE--EEecCceEEEEEEEccCCC---CcchHHHHHhhheehh
Confidence            43322    1233333322111 1133433  3456889999999887432   2334677888877654

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=94.08  E-value=1  Score=40.47  Aligned_cols=136  Identities=24%  Similarity=0.362  Sum_probs=68.3

Q ss_pred             eeeeCCCCeEEEccCCceEEeee----cceeEEecCC--------CCc-ceeEEEEecCCCCCCcccC----ChHHHHHH
Q 025977           97 SVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVI--------EPL-ESVSVNLIPTGKQDIRDFG----PPQEVAET  159 (245)
Q Consensus        97 ~y~D~~~gysf~yP~~W~e~~~~----G~~~~f~d~~--------~~~-~nVsV~v~P~~~~si~d~G----speeva~~  159 (245)
                      ++.|...||+|.+|.||++.+-.    |+...-+-..        .+. ..-+|.+...+   ++=|.    +-.+.|.+
T Consensus       111 rvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld---~kl~a~ae~dn~kaa~r  187 (297)
T PF07174_consen  111 RVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLD---LKLFASAEPDNTKAAVR  187 (297)
T ss_pred             cccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccc---ccccccccCChHHHHHH
Confidence            44455789999999999965421    4444332111        111 22344444443   11222    33456666


Q ss_pred             HHHhh---c-CCC----CCceEEEEeeeeccCCc-eeEEEEEEEeCCCCccEEEEEEEEEC-----------CEEEEEEE
Q 025977          160 LIKKF---L-APP----TQKTKIIAASENDVDGK-AYYAFEFTAQAPNYIRHALGVVTVGN-----------GKFYTLTT  219 (245)
Q Consensus       160 ll~~~---~-~~~----~~~~~ll~a~~~~~~G~-~YY~~Ey~~~~~~~~rH~l~~~~v~~-----------grLYtl~~  219 (245)
                      |..++   + .=+    +|+...|++.  ...|. .||  |...+......-++++..|..           -|-|.+.+
T Consensus       188 l~sdmgeffmp~pg~rinq~~~~l~~~--g~~g~asyy--evkf~d~~kp~gqiw~~vvg~p~~~~~~~~~~~rwfvvwl  263 (297)
T PF07174_consen  188 LASDMGEFFMPYPGTRINQETTPLDAN--GMPGSASYY--EVKFTDANKPNGQIWAGVVGSPVAPGTPRGTPQRWFVVWL  263 (297)
T ss_pred             HhccccceeccCCCccccccccccccC--CcccceeEE--EEEeccCCCCCCceEEEeecCcCCCCCCCCCCceEEEEEe
Confidence            66542   2 111    2555556543  33343 355  555444333333455555543           27888888


Q ss_pred             EecchhhhhhhHHHHHhhccce
Q 025977          220 GANERRWGKMKDRLQTVIESFK  241 (245)
Q Consensus       220 qape~~w~k~~~~l~~iv~SF~  241 (245)
                      .+...--+|..  -+.+.+|.|
T Consensus       264 gt~~~pvd~~~--a~~la~si~  283 (297)
T PF07174_consen  264 GTANNPVDKGA--AKALAESIR  283 (297)
T ss_pred             cCCCCCCCHHH--HHHHHhhcc
Confidence            87766655544  333444443

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=91.31  E-value=0.72  Score=43.02  Aligned_cols=136  Identities=15%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             cCccccccCCce---eeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecC--C-CCCCcccCChHHHHH
Q 025977           85 PSFAAESNKGFL---SVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPT--G-KQDIRDFGPPQEVAE  158 (245)
Q Consensus        85 ~a~A~~~~~gf~---~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~--~-~~si~d~Gspeeva~  158 (245)
                      -.|++.+..||.   .|.-++-|++|.||.||+-.+...+...+    .+.+ +.+.+-.+  + ..++.||      +.
T Consensus       274 ~lyGDSp~eGyvRgq~FlH~~Lg~tf~~P~Gf~IdN~~~Avlat----g~ge-~aIrfdgv~~~s~~sltdy------ir  342 (479)
T COG4784         274 LLYGDSPQEGYVRGQTFLHPELGVTFDVPDGFKIDNSAEAVLAT----GPGE-VAIRFDGVSDDSRRSLTDY------IR  342 (479)
T ss_pred             cccCCCcccceecccceeccccceEEecCCceEecCchHHhhcc----CCcc-eeEeeccccCccccCHHHH------HH
Confidence            344566777886   56667889999999999854432111111    1111 22222211  1 1333333      22


Q ss_pred             HHHHhhcCCCCCceEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEE-CCEEEEEEEEecchhhhhhhHHHHHhh
Q 025977          159 TLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG-NGKFYTLTTGANERRWGKMKDRLQTVI  237 (245)
Q Consensus       159 ~ll~~~~~~~~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~-~grLYtl~~qape~~w~k~~~~l~~iv  237 (245)
                      .   .|.+. -++..   .+..+++|.     |=.+......|-.+-++.+. |++.|.|...+|-..- .-++.+..+.
T Consensus       343 s---gwv~g-l~~et---vkq~~iNG~-----~Aata~a~A~~w~fdvaVI~~g~rvyrfltavp~gs~-~l~~~a~sv~  409 (479)
T COG4784         343 S---GWVAG-LDPET---VKQTTINGL-----EAATARASADRWQFDVAVIRAGDRVYRFLTAVPKGST-ALEPRANSVR  409 (479)
T ss_pred             H---hhhcc-CChhh---hhhhccCCc-----hhcccCCCcccccceEEEEEeCCEEEEEEEecccCcc-hhhHHHHHHH
Confidence            1   22210 00111   111234442     22111112233344444554 7899999888875543 3445889999


Q ss_pred             ccceeee
Q 025977          238 ESFKISN  244 (245)
Q Consensus       238 ~SF~v~~  244 (245)
                      .|||++.
T Consensus       410 ~SFR~lt  416 (479)
T COG4784         410 RSFRPLT  416 (479)
T ss_pred             hhcccCC
Confidence            9998763

>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []

Probab=84.68  E-value=1.3  Score=25.56  Aligned_cols=17  Identities=29%  Similarity=0.352  Sum_probs=11.6

Q ss_pred             cchhHHHHHHHHHHHhh
Q 025977           62 CGRRQMIAVGVIAPWVS   78 (245)
Q Consensus        62 ~~RR~~l~~~~~aa~~~   78 (245)
                      ++||++|..+++++++.
T Consensus         2 ~sRR~fLk~~~a~~a~~   18 (26)
T PF10518_consen    2 LSRRQFLKGGAAAAAAA   18 (26)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            57999997666544333

Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		1e-23
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		2e-16
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		4e-07
2vu4_A	190	Structure Of Psbp Protein From Spinacia Oleracea At		6e-07

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 89  AESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQ-DKVFKDVIEPLESVSV--NLIPTGKQ 145
           + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VSV  N + + K 
Sbjct: 2   SSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKS 61
Query: 146 DIRDFGPPQEVAETLIKKFLAPPT--QKTKIIAASENDVDGKAYYAFEFTAQAPN----- 198
            + + G P+EV + L++  +AP    + + +IAA+    D K YY  E+    P      
Sbjct: 62  -LEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTA 120
Query: 199 YIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
             RH L  + V  GK YTL+  A E RW K++D+ +T++ SF +
Sbjct: 121 QQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Query: 99  TDKKDGYSFVYPFGWQEVIIEGQ----DKVFKDVIEPLESVSVNL--IPTGKQDIRDFGP 152
           +D KDGY F+YP GW  V ++G     D VF+D+IE  E++SV +  IP+ K  + D G 
Sbjct: 18  SDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGT 76
Query: 153 PQEVAETLIKKF--LAPPTQKTKIIAASENDVDGKAYYAFEFTAQ-APNYIRHALGVVTV 209
             +V    +K     +   ++ ++I A   D DG+ YY  E+      N  RH L  VT 
Sbjct: 77  ATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTT 136
Query: 210 GNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
             GK  T      E RW  +K    TV  SF +
Sbjct: 137 NRGKLITFDLSTAEDRWDTVKSLFDTVASSFHV 169

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
           DG+    P  W   +EV   GQ   F+D  +   +V V + PT K+ I DFG P++    
Sbjct: 15  DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 74
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
            + L+ +            F +       ++  S  +V GK YY       TA      +
Sbjct: 75  VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGK 134
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
           H L   TV +GK Y     A ++RW K  K  ++    SF ++
Sbjct: 135 HQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177

>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A Resolution Length = 190

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
           DG+  + P  W   +E    GQ   ++D  +   ++SV + PT K+ I DFG P++    
Sbjct: 28  DGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQ 87
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
            + L+ K            F +       ++ +S   VDGK YY+      TA      +
Sbjct: 88  VDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGK 147
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
           H +   TV +GK Y     A ++RW K  K  +++   SF ++
Sbjct: 148 HQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	4e-48
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	3e-45
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-44
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	1e-42

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  148 bits (374), Expect = 3e-45
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIP-TGKQ 145
            + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VSV +      +
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60

Query: 146 DIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAPNYI--- 200
            + + G P+EV + L++  +AP    + + +IAA+    D K YY  E+    P      
Sbjct: 61  SLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTA 120

Query: 201 --RHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
             RH L  + V  GK YTL+  A E RW K++D+ +T++ SF +
Sbjct: 121 QQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  145 bits (367), Expect = 3e-44
 Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPT- 142
                      +D KDGY F+YP GW  V ++    G D VF+D+IE  E++SV +    
Sbjct: 7   GGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIP 66

Query: 143 GKQDIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASENDVDGKAYYAFEFTAQ-APNY 199
             + + D G   +V    +K         ++ ++I A   D DG+ YY  E+      N 
Sbjct: 67  SDKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNV 126

Query: 200 IRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
            RH L  VT   GK  T      E RW  +K    TV  SF +
Sbjct: 127 ERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHV 169

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  141 bits (357), Expect = 1e-42
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 24/178 (13%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
             +++  F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K
Sbjct: 2   KPKTDTDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK 59

Query: 145 QDIRDFGPPQE----VAETLIKKFLAPPTQK-----------TKIIAASENDVDGKAYYA 189
           + I DFG P++    V   L ++  +  T               ++  S  +V GK YY 
Sbjct: 60  KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYY 119

Query: 190 FEFTAQAPN---YIRHALGVVTVGNGKFYTLTTGANERRWGKMKDR-LQTVIESFKIS 243
                +  +     +H L   TV +GK Y     A ++RW K   + ++    SF ++
Sbjct: 120 LSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	99.06
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	98.19
3hlz_A	269	Uncharacterized protein BT_1490; NP_810393.1, stru	83.52

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=1.7e-39  Score=268.93  Aligned_cols=153  Identities=37%  Similarity=0.735  Sum_probs=142.1

Q ss_pred             ccCCceeeeeCCCCeEEEccCCceEEeee-cceeEEecCCCCcceeEEEEecCCC-CCCcccCChHHHHHHHHHhhcCCC
Q 025977           91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKFLAPP  168 (245)
Q Consensus        91 ~~~gf~~y~D~~~gysf~yP~~W~e~~~~-G~~~~f~d~~~~~~nVsV~v~P~~~-~si~d~Gspeeva~~ll~~~~~~~  168 (245)
                      .+.||++|.|+.+||+|.||++|++..++ |++++|+|+.+..+||+|+|.|.++ ++|++||+|+++++.|+++.++++
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~   83 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS   83 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence            46799999999999999999999999887 9999999999988999999999875 899999999999999999988755


Q ss_pred             --CCceEEEEeeeeccCCceeEEEEEEEeCCC-----CccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccce
Q 025977          169 --TQKTKIIAASENDVDGKAYYAFEFTAQAPN-----YIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFK  241 (245)
Q Consensus       169 --~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~-----~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~  241 (245)
                        ++.++|+++.+++.+|++||+|||+++.+.     +.||.|+++++++|+||+|++|+||++|+++++.|++|++||+
T Consensus        84 ~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~~~~l~~v~~SF~  163 (165)
T 2xb3_A           84 ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFT  163 (165)
T ss_dssp             TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHHHHHHHHHHHTCE
T ss_pred             CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHHHHHHHHHHHhhEE
Confidence              688999999999999999999999998877     8999999999999999999999999999999999999999999


Q ss_pred             ee
Q 025977          242 IS  243 (245)
Q Consensus       242 v~  243 (245)
                      ++
T Consensus       164 v~  165 (165)
T 2xb3_A          164 VY  165 (165)
T ss_dssp             EC
T ss_pred             eC
Confidence            85

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.6e-38  Score=266.50  Aligned_cols=152  Identities=26%  Similarity=0.482  Sum_probs=128.4

Q ss_pred             cccCCceeeeeCCCCeEEEccCCceEE---eeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHH----HHH
Q 025977           90 ESNKGFLSVTDKKDGYSFVYPFGWQEV---IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAET----LIK  162 (245)
Q Consensus        90 ~~~~gf~~y~D~~~gysf~yP~~W~e~---~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~----ll~  162 (245)
                      +++.||++|.  .+||+|.||.+|++.   ..+|++++|+|+.+..+||+|+|.|+++++|+|||+|++|++.    |++
T Consensus         4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~   81 (177)
T 1v2b_A            4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR   81 (177)
T ss_dssp             ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred             CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHH
Confidence            4678999997  899999999999954   3569999999999999999999999988999999999996555    455


Q ss_pred             hhcCCC-----------CCceEEEEeeeeccCCceeEEEEEEEeCCC---CccEEEEEEEEECCEEEEEEEEecchhhhh
Q 025977          163 KFLAPP-----------TQKTKIIAASENDVDGKAYYAFEFTAQAPN---YIRHALGVVTVGNGKFYTLTTGANERRWGK  228 (245)
Q Consensus       163 ~~~~~~-----------~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~---~~rH~l~~~~v~~grLYtl~~qape~~w~k  228 (245)
                      +++.+.           .+.++|+++++++.||++||+|||.++.++   +.||+|++++++||+||+|++|++|++|++
T Consensus        82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k  161 (177)
T 1v2b_A           82 QAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFK  161 (177)
T ss_dssp             ----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCST
T ss_pred             HhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhh
Confidence            555431           266899999999999999999999998776   799999999999999999999999999999


Q ss_pred             h-hHHHHHhhccceee
Q 025977          229 M-KDRLQTVIESFKIS  243 (245)
Q Consensus       229 ~-~~~l~~iv~SF~v~  243 (245)
                      . ++.|++|++||+|.
T Consensus       162 ~~~~~l~~v~~SF~v~  177 (177)
T 1v2b_A          162 GAKKFVENTATSFSLA  177 (177)
T ss_dssp             TTTHHHHHHHHTCEEC
T ss_pred             hHHHHHHHHHhheecC
Confidence            5 99999999999973

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=1.9e-40  Score=276.44  Aligned_cols=154  Identities=32%  Similarity=0.575  Sum_probs=144.5

Q ss_pred             cccCCceeeeeCCCCeEEEccCCceEEeee----cceeEEecCCCCcceeEEEEecCCC-CCCcccCChHHHHHHHHHhh
Q 025977           90 ESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKF  164 (245)
Q Consensus        90 ~~~~gf~~y~D~~~gysf~yP~~W~e~~~~----G~~~~f~d~~~~~~nVsV~v~P~~~-~si~d~Gspeeva~~ll~~~  164 (245)
                      +.+.||++|.|+.+||+|.||++|+++.++    |++++|+|+.+..+||+|+|+|+++ ++|+|||+|++++++|++++
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            356799999999999999999999988776    8999999999999999999999976 99999999999999999988


Q ss_pred             cCCC--CCceEEEEeeeeccCCceeEEEEEEEeCC-CCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccce
Q 025977          165 LAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAP-NYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFK  241 (245)
Q Consensus       165 ~~~~--~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~-~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~  241 (245)
                      ++++  ++.++|+++.+++.+|++||+|||+++.+ ++.||.|+++++++|+||+|++|+||++|++.++.|++|++||+
T Consensus        89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~  168 (170)
T 2lnj_A           89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH  168 (170)
Confidence            8766  58899999999999999999999999987 78999999999999999999999999999999999999999999


Q ss_pred             ee
Q 025977          242 IS  243 (245)
Q Consensus       242 v~  243 (245)
                      |+
T Consensus       169 v~  170 (170)
T 2lnj_A          169 VY  170 (170)
Confidence            85

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=99.06  E-value=9.1e-09  Score=83.00  Aligned_cols=137  Identities=9%  Similarity=0.023  Sum_probs=94.8

Q ss_pred             ceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCc--ceeEEEEecCC-CCCCcccCChHHHHHHHHHhhcCCCCCc
Q 025977           95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPL--ESVSVNLIPTG-KQDIRDFGPPQEVAETLIKKFLAPPTQK  171 (245)
Q Consensus        95 f~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~--~nVsV~v~P~~-~~si~d~Gspeeva~~ll~~~~~~~~~~  171 (245)
                      +..|.  -+.++|.+|.+|+...   ..+++....++.  -++.|...+.. ..      +.+...++-+++... ....
T Consensus         3 m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~~~------~l~~~~~~q~~~l~~-~l~~   70 (148)
T 1tu1_A            3 MTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQGDA------PFADYVARQLENAEK-QLPG   70 (148)
T ss_dssp             EEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCTTS------CHHHHHHHHHHHHHH-HSTT
T ss_pred             CceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCCCC------CHHHHHHHHHHHHHh-hCcC
Confidence            56775  7999999999999543   344443322222  34555544442 23      344444443222110 1123


Q ss_pred             eEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977          172 TKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS  243 (245)
Q Consensus       172 ~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~  243 (245)
                      .+++.....+.+|.+...|||++...+..+|.+.++.+.++++|+|+++++...|+..++.++.|++||++.
T Consensus        71 y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~~  142 (148)
T 1tu1_A           71 FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR  142 (148)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred             cEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhcccC
Confidence            445544444457889999999999878888999999998779999999999999999999999999999974

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=98.19  E-value=9e-05  Score=60.52  Aligned_cols=133  Identities=13%  Similarity=0.136  Sum_probs=87.3

Q ss_pred             CCeEEEccCCceEEeeecceeEEe-cC--CCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEEeee
Q 025977          103 DGYSFVYPFGWQEVIIEGQDKVFK-DV--IEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE  179 (245)
Q Consensus       103 ~gysf~yP~~W~e~~~~G~~~~f~-d~--~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a~~  179 (245)
                      -++++..|.||+.....|.-.... +.  .+-.-|+-|++.-... +   +  .|+.... +.+..+ .....++++-..
T Consensus        18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-~---~--~e~~r~e-l~~~~~-~lp~~~~~~r~~   89 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-G---A--LHNQRTE-LDQRAT-QLPDYAERGRTE   89 (161)
T ss_dssp             CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-T---H--HHHHHHH-HHHHHT-TSTTCEEEEEEE
T ss_pred             ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-H---H--HHHHHHH-HHHHHh-hCCCcEeecccc
Confidence            579999999999876545422222 21  1235677777765431 1   2  2333322 333222 122455655555


Q ss_pred             eccCCceeEEEEEEEeCCCCccEE--EEEEEEE-CCEEEEE--EEEecchhhhhhhHHHHHhhccceee
Q 025977          180 NDVDGKAYYAFEFTAQAPNYIRHA--LGVVTVG-NGKFYTL--TTGANERRWGKMKDRLQTVIESFKIS  243 (245)
Q Consensus       180 ~~~~G~~YY~~Ey~~~~~~~~rH~--l~~~~v~-~grLYtl--~~qape~~w~k~~~~l~~iv~SF~v~  243 (245)
                      .+.+|.+.+..||.+..++.+.+.  +..+.+. ++..|.+  ++++.+.+-+...+.++.|++||++.
T Consensus        90 ~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~  158 (161)
T 3lyd_A           90 TTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ  158 (161)
T ss_dssp             EEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred             cccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence            578999999999999877777762  3444444 6665555  99999999999999999999999985

>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}

Probab=83.52  E-value=20  Score=30.57  Aligned_cols=121  Identities=13%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             eeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEE
Q 025977           96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKII  175 (245)
Q Consensus        96 ~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll  175 (245)
                      +.|..++.=|+..||.+|.|.+-.--.-.|.||..=..|..+.---         | -...+...+++.+. .+..++++
T Consensus         5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk---------~-~~~yg~~~~~~El~-en~sa~~v   73 (269)
T 3hlz_A            5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK---------G-NASYGKDAIRQELK-ENDSASLV   73 (269)
T ss_dssp             EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE---------C-STTHHHHHHHHHHH-HCTTCEEE
T ss_pred             ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc---------C-chhhHHHHHHHHHh-cCCCceEE
Confidence            3466667779999999999886432345677887766776544321         1 11233334444332 22334444


Q ss_pred             Eee---------eeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977          176 AAS---------ENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN  244 (245)
Q Consensus       176 ~a~---------~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~  244 (245)
                      ...         ....+|. ||           ..|...  +-.++--+-|..+.+-..=   ...-+.|+.|..+.+
T Consensus        74 kvg~~~caYs~e~F~Eeg~-~y-----------tsH~Wi--tG~~~~afeCsFTv~kg~~---~~~aE~iiasL~vR~  134 (269)
T 3hlz_A           74 KIGTWDCAYSKEMFQEEGT-YY-----------TSHLWI--TGTGNIAFECSFTVPKGGS---AKEAEEVIATLEARK  134 (269)
T ss_dssp             EETTEEEEEEEEEEEETTE-EE-----------EEEEEE--EEETTEEEEEEEEEETTCC---CHHHHHHHHHCEECC
T ss_pred             EeccEeeeehHhhhhhcCe-eE-----------EEEEEE--eccCceEEEEEEEecCCCC---cchHHHHHhHheehh
Confidence            322         1234443 43           334433  2346677777777764322   234566777776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	6e-39

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  131 bits (330), Expect = 6e-39
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 24/172 (13%)

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K+ I DF
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 151 GPPQE----VAETLIKKFLAPPTQK-----------TKIIAASENDVDGKAYYAFEF--- 192
           G P++    V   L ++  +  T               ++  S  +V GK YY       
Sbjct: 60  GSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTR 119

Query: 193 TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDR-LQTVIESFKIS 243
           TA      +H L   TV +GK Y     A ++RW K   + ++    SF ++
Sbjct: 120 TADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	99.19

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.6e-36  Score=250.88  Aligned_cols=149  Identities=26%  Similarity=0.472  Sum_probs=128.4

Q ss_pred             CCceeeeeCCCCeEEEccCCceEE---eeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhh----c
Q 025977           93 KGFLSVTDKKDGYSFVYPFGWQEV---IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKF----L  165 (245)
Q Consensus        93 ~gf~~y~D~~~gysf~yP~~W~e~---~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~----~  165 (245)
                      ++|++|.|  |||+|.||++|++.   ...|++++|+|+.+..+||+|+|.|+++.+|++||+|+++++.++...    +
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~   78 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY   78 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhh
Confidence            36999986  89999999999854   355899999999999999999999998999999999999998875432    2


Q ss_pred             C-----------CCCCceEEEEeeeeccCCceeEEEEEEEeCC---CCccEEEEEEEEECCEEEEEEEEecchhhhhh-h
Q 025977          166 A-----------PPTQKTKIIAASENDVDGKAYYAFEFTAQAP---NYIRHALGVVTVGNGKFYTLTTGANERRWGKM-K  230 (245)
Q Consensus       166 ~-----------~~~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~---~~~rH~l~~~~v~~grLYtl~~qape~~w~k~-~  230 (245)
                      .           ...+.++|+++++++.||++||+|||+++.+   ++.||+|+++++.+|+||+|++|+||++|++. +
T Consensus        79 ~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~  158 (171)
T d1v2ba_          79 SGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAK  158 (171)
T ss_dssp             -------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTT
T ss_pred             cccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhhhhhH
Confidence            1           1235678999999999999999999998765   46899999999999999999999999999985 5


Q ss_pred             HHHHHhhccceee
Q 025977          231 DRLQTVIESFKIS  243 (245)
Q Consensus       231 ~~l~~iv~SF~v~  243 (245)
                      ..|++|++||+|.
T Consensus       159 ~~l~~~v~SF~v~  171 (171)
T d1v2ba_         159 KFVENTATSFSLA  171 (171)
T ss_dssp             HHHHHHHHTCEEC
T ss_pred             HHHHHHHhceEeC
Confidence            6799999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.19  E-value=3.4e-10  Score=88.79  Aligned_cols=139  Identities=9%  Similarity=-0.005  Sum_probs=99.7

Q ss_pred             ceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCC-cceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceE
Q 025977           95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEP-LESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTK  173 (245)
Q Consensus        95 f~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~-~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~  173 (245)
                      +..|.  .+.=+|.+|++|.+..+  +...+.+.... ..|+.|+..+..     +=.+++++.++.+...-. .....+
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~--ni~~~~~~~~~~~~~lvIsr~~l~-----~~~~l~~~~~~~~~~l~~-~l~~~~   72 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI--NIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEK-QLPGFK   72 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB--EEEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHH-HSTTCE
T ss_pred             CceeE--EcCEEEeCCCCceeCcc--eEEEecCCCCCcceEEEEEeecCC-----CCCCHHHHHHHHHHHHHh-hCCCcE
Confidence            45665  45569999999986542  12223333221 234555555542     223556666665433211 123467


Q ss_pred             EEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977          174 IIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS  243 (245)
Q Consensus       174 ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~  243 (245)
                      +++....+++|.+.+.+||++..++...|..-++.+.++++|+|+++++...|+..++.++++++||++.
T Consensus        73 ~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p~  142 (144)
T d1tu1a_          73 LHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR  142 (144)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred             EEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHHHHHHhCccC
Confidence            8887777889999999999999877778999999999999999999999999999999999999999975