Citrus Sinensis ID: 025987

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEcccccccHHHHccccccccEEEEccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHcccEEEEcccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHcHHHHcHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccccEEEEccHHHHHHHHHHHcccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHccccEEEEEHHHHccccccccccc
MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVdkapqlpediKWHFVGhlqsnkaktllggvpnldmvegvgnEKIANHLDKAVSNLGRKPLKVLVQVNTsgeesksgidpssclgivehvrlrcpnlefsglmtigmpdytstpeNFRTLLNCRAEVCKALGmaedqcelsmgmsgDFEQAIEMGSTsvrigstifgpreyakkqqn
maaptvegaavtalRSVLHRVRQaaersgrtqeqirvvavsktkpvsliRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKavsnlgrkpLKVLVQVNtsgeesksgidpsscLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRigstifgpreyakkqqn
MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
****************VL****************IRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV**************SCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSM******************I***I************
******E**AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF***********
*********AVTALRSVLHR*************QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN***********PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
*******GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
O94903275 Proline synthase co-trans yes no 0.922 0.821 0.528 5e-60
Q9Z2Y8274 Proline synthase co-trans yes no 0.963 0.861 0.504 5e-59
Q3T0G5273 Proline synthase co-trans yes no 0.930 0.835 0.516 8e-59
Q5R4Z1275 Proline synthase co-trans yes no 0.934 0.832 0.510 2e-57
Q1ZXI6255 Proline synthase co-trans yes no 0.938 0.901 0.463 4e-54
P52057244 Proline synthase co-trans yes no 0.930 0.934 0.453 2e-44
Q9KUQ4236 UPF0001 protein VC_0461 O yes no 0.861 0.894 0.443 6e-42
P52055233 UPF0001 protein in pilT-p N/A no 0.889 0.935 0.421 2e-40
Q9CPD5233 UPF0001 protein PM0112 OS yes no 0.906 0.952 0.386 5e-38
Q9P6Q1237 UPF0001 protein C644.09 O yes no 0.897 0.928 0.4 7e-38
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1 Back     alignment and function desciption
 Score =  230 bits (587), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 164/244 (67%), Gaps = 18/244 (7%)

Query: 13  ALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
           ALR+V  RV+QA  R  R    I  R+VAVSKTKP  ++ + Y  G R+FGENYVQE+++
Sbjct: 16  ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75

Query: 71  KAPQ-----LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG 125
           KA       L  +IKWHF+GHLQ      L+  VPNL M+E V + K+A   DK  S+  
Sbjct: 76  KASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLA---DKVNSSWQ 131

Query: 126 RK----PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYT 179
           RK     LKV+VQ+NTSGEESK G+ PS  + IVEH+  +CPNLEF GLMTIG    D +
Sbjct: 132 RKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLS 191

Query: 180 STPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPRE 238
             P  +F+ LL+ R E+CK L +  DQ ELSMGMS DF+ A+E+GST+VRIGSTIFG R+
Sbjct: 192 QGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERD 251

Query: 239 YAKK 242
           Y+KK
Sbjct: 252 YSKK 255

Homo sapiens (taxid: 9606)
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1 Back     alignment and function description
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2 Back     alignment and function description
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1 Back     alignment and function description
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1 Back     alignment and function description
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1 Back     alignment and function description
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1 Back     alignment and function description
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.09 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
255577143245 proline synthetase associated protein, p 1.0 1.0 0.820 1e-118
147861921245 hypothetical protein VITISV_024616 [Viti 1.0 1.0 0.820 1e-116
225460901245 PREDICTED: proline synthase co-transcrib 1.0 1.0 0.816 1e-115
449463228245 PREDICTED: proline synthase co-transcrib 1.0 1.0 0.804 1e-115
449503195245 PREDICTED: proline synthase co-transcrib 1.0 1.0 0.804 1e-115
297799306244 AT4g26860/F10M23_200 [Arabidopsis lyrata 0.987 0.991 0.797 1e-111
356527075244 PREDICTED: proline synthase co-transcrib 0.991 0.995 0.774 1e-111
240256085244 putative pyridoxal phosphate-dependent e 0.987 0.991 0.797 1e-111
356567318244 PREDICTED: proline synthase co-transcrib 0.991 0.995 0.782 1e-110
356527077252 PREDICTED: proline synthase co-transcrib 0.991 0.964 0.75 1e-108
>gi|255577143|ref|XP_002529455.1| proline synthetase associated protein, putative [Ricinus communis] gi|223531071|gb|EEF32921.1| proline synthetase associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/245 (82%), Positives = 218/245 (88%)

Query: 1   MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSF 60
           MAAP +EGAAVTALRSV+ RVRQAAER+GR  E +R+VAVSKTKPVSLIR VYDAGHR F
Sbjct: 1   MAAPAIEGAAVTALRSVMVRVRQAAERAGRRPESVRIVAVSKTKPVSLIRHVYDAGHRCF 60

Query: 61  GENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKA 120
           GENYVQE+VDKAPQLPEDI+WHF+GHLQSNK KTLL GVPNL MV+GV NEK+AN LD+ 
Sbjct: 61  GENYVQEVVDKAPQLPEDIEWHFIGHLQSNKVKTLLAGVPNLAMVQGVDNEKVANVLDRV 120

Query: 121 VSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS 180
           VS LGR PLKV VQVNTSGE SKSGI+PSSC+ + EHV+LRCPNL  SGLMTIGMPDYTS
Sbjct: 121 VSTLGRNPLKVFVQVNTSGEASKSGIEPSSCVALAEHVKLRCPNLVLSGLMTIGMPDYTS 180

Query: 181 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 240
           TPENFR L NCR EVCKALGMAED CELSMGMSGDFEQAIEMGST+VR+GSTIFGPREY 
Sbjct: 181 TPENFRKLSNCRLEVCKALGMAEDHCELSMGMSGDFEQAIEMGSTNVRVGSTIFGPREYP 240

Query: 241 KKQQN 245
           KKQ N
Sbjct: 241 KKQSN 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460901|ref|XP_002278892.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein [Vitis vinifera] gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463228|ref|XP_004149336.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503195|ref|XP_004161881.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297799306|ref|XP_002867537.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata] gi|297313373|gb|EFH43796.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527075|ref|XP_003532139.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|240256085|ref|NP_567760.4| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] gi|14030629|gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana] gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200 [Arabidopsis thaliana] gi|21536981|gb|AAM61322.1| putative proline synthetase associated protein [Arabidopsis thaliana] gi|332659861|gb|AEE85261.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356567318|ref|XP_003551868.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356527077|ref|XP_003532140.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
TAIR|locus:2008910257 AT1G11930 [Arabidopsis thalian 0.979 0.933 0.729 8.1e-92
UNIPROTKB|Q0DKP7214 Os05g0150000 "Os05g0150000 pro 0.865 0.990 0.746 5e-83
UNIPROTKB|A8HP79251 CHLREDRAFT_116897 "Predicted p 0.934 0.912 0.591 7e-70
UNIPROTKB|O94903275 PROSC "Proline synthase co-tra 0.930 0.829 0.524 9.6e-57
MGI|MGI:1891207274 Prosc "proline synthetase co-t 0.963 0.861 0.504 8.6e-56
UNIPROTKB|Q3T0G5273 PROSC "Proline synthase co-tra 0.930 0.835 0.516 1.8e-55
RGD|1308962275 Prosc "proline synthetase co-t 0.963 0.858 0.496 3.7e-55
UNIPROTKB|F1RX84275 PROSC "Uncharacterized protein 0.930 0.829 0.520 1.3e-54
UNIPROTKB|E1C516276 PROSC "Uncharacterized protein 0.930 0.826 0.508 3.8e-53
DICTYBASE|DDB_G0278713255 prosc "alanine racemase N-term 0.938 0.901 0.471 4.4e-52
TAIR|locus:2008910 AT1G11930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 178/244 (72%), Positives = 205/244 (84%)

Query:     1 MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSF 60
             M+A  ++G A  ALRSV  RV QAAE++GR  +QIRVVAVSKTKPVSLIRQVYDAG RSF
Sbjct:    16 MSAAAIDGVA--ALRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSF 73

Query:    61 GENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKA 120
             GENYVQEI++KAPQLPEDI+WHF+G+LQSNK K LL GVPNL  VE V +EKIAN LD+ 
Sbjct:    74 GENYVQEIIEKAPQLPEDIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRV 133

Query:   121 VSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS 180
             V N+GRKPLKV VQVNTSGE+SK G++PS C+G+ +HV+  C NLEFSGLMTIGM DYTS
Sbjct:   134 VGNIGRKPLKVFVQVNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTS 193

Query:   181 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA--IEMGSTSVRIGSTIFGPRE 238
             TPENF+ L  CR+EVCK LG+ E+QCELSMGMSGDFE A  IE+GST+VRIGSTIFG RE
Sbjct:   194 TPENFKLLAKCRSEVCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGARE 253

Query:   239 YAKK 242
             Y KK
Sbjct:   254 YPKK 257
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IBA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
UNIPROTKB|Q0DKP7 Os05g0150000 "Os05g0150000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8HP79 CHLREDRAFT_116897 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|O94903 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1891207 Prosc "proline synthetase co-transcribed" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0G5 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308962 Prosc "proline synthetase co-transcribed homolog (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX84 PROSC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C516 PROSC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278713 prosc "alanine racemase N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O31727YLME_BACSUNo assigned EC number0.33770.88160.9391yesno
O66631Y274_AQUAENo assigned EC number0.39240.89380.9605yesno
Q9Z2Y8PROSC_MOUSENo assigned EC number0.5040.96320.8613yesno
Q3T0G5PROSC_BOVINNo assigned EC number0.51650.93060.8351yesno
Q9CCE2Y919_MYCLENo assigned EC number0.30540.89380.8521yesno
Q5R4Z1PROSC_PONABNo assigned EC number0.51030.93460.8327yesno
Q9RUL6Y1368_DEIRANo assigned EC number0.34090.82850.9712yesno
Q9P6Q1YKC9_SCHPONo assigned EC number0.40.89790.9282yesno
O25156Y395_HELPYNo assigned EC number0.34800.85710.9459yesno
Q9KUQ4Y461_VIBCHNo assigned EC number0.44390.86120.8940yesno
Q9CPD5Y112_PASMUNo assigned EC number0.38620.90610.9527yesno
P44506Y090_HAEINNo assigned EC number0.39140.91420.9451yesno
O94903PROSC_HUMANNo assigned EC number0.52860.92240.8218yesno
P52057PROSC_CAEELNo assigned EC number0.45370.93060.9344yesno
P67081YGGS_ECOL6No assigned EC number0.40920.89380.9358yesno
P67083Y2148_MYCTUNo assigned EC number0.31150.91020.8643yesno
P67084Y2172_MYCBONo assigned EC number0.31150.91020.8643yesno
P24562Y394_PSEAENo assigned EC number0.39730.87340.9304yesno
Q1ZXI6PROSC_DICDINo assigned EC number0.46370.93870.9019yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
cd06822227 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosph 1e-135
cd00635222 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxa 9e-90
COG0325228 COG0325, COG0325, Predicted enzyme with a TIM-barr 2e-85
cd06824224 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphat 1e-74
TIGR00044229 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, 3e-62
pfam01168217 pfam01168, Ala_racemase_N, Alanine racemase, N-ter 7e-38
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 1e-16
COG3457 353 COG3457, COG3457, Predicted amino acid racemase [A 0.004
>gnl|CDD|143496 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information 
 Score =  380 bits (978), Expect = e-135
 Identities = 136/228 (59%), Positives = 171/228 (75%), Gaps = 7/228 (3%)

Query: 14  LRSVLHRVRQAAERSGRTQ--EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDK 71
           L + L R+RQA +R+ +     + R+VAVSKTKP  LI++ YDAG R FGENYVQE+++K
Sbjct: 1   LIANLKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEK 60

Query: 72  APQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLK 130
           AP LP DIKWHF+GHLQSNK K LL  VPNL MVE V +EK+A+ L+KA   LG R+PLK
Sbjct: 61  APDLPIDIKWHFIGHLQSNKVKKLL-KVPNLYMVETVDSEKLADKLNKAWEKLGEREPLK 119

Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRT 187
           V+VQVNTSGEESKSG++PS  + +V+H+   CPNL+FSGLMTIG   Y+       +F  
Sbjct: 120 VMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLC 179

Query: 188 LLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235
           L++CR +VC+ LG+  D  ELSMGMS DFE AIEMGST+VR+GS IFG
Sbjct: 180 LVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227

This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog). Length = 227
>gnl|CDD|143483 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>gnl|CDD|223402 COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|143497 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|225988 COG3457, COG3457, Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 100.0
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 100.0
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 100.0
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 100.0
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 100.0
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 100.0
KOG3157244 consensus Proline synthetase co-transcribed protei 100.0
cd06815 353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 100.0
COG0787 360 Alr Alanine racemase [Cell envelope biogenesis, ou 100.0
cd06825 368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 100.0
cd06826 365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 100.0
TIGR00492 367 alr alanine racemase. This enzyme interconverts L- 100.0
PRK03646 355 dadX alanine racemase; Reviewed 100.0
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 100.0
PRK00053 363 alr alanine racemase; Reviewed 100.0
PRK13340 406 alanine racemase; Reviewed 100.0
cd00430 367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 100.0
cd06827 354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 100.0
cd07376 345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 100.0
cd06821 361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 100.0
cd06817 389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06820 353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 100.0
cd06814 379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 100.0
cd06811 382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 100.0
cd06813 388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.97
cd06819 358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.97
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.97
cd06812 374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.96
cd06818 382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.96
COG3457 353 Predicted amino acid racemase [Amino acid transpor 99.91
COG3616 368 Predicted amino acid aldolase or racemase [Amino a 99.89
cd06810 368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 99.86
cd06839 382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 99.86
cd06828 373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 99.85
cd00622 362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 99.84
cd06842 423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 99.84
cd06843 377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 99.83
TIGR03099 398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 99.82
PLN02537 410 diaminopimelate decarboxylase 99.82
TIGR01048 417 lysA diaminopimelate decarboxylase. This family co 99.81
cd06841 379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 99.79
PRK11165 420 diaminopimelate decarboxylase; Provisional 99.45
COG0019 394 LysA Diaminopimelate decarboxylase [Amino acid tra 99.29
cd06830 409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 99.29
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 99.2
cd06836 379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 99.18
cd06831 394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 99.08
TIGR01273 624 speA arginine decarboxylase, biosynthetic. A disti 99.0
TIGR01047 380 nspC carboxynorspermidine decarboxylase. This prot 98.96
PRK05354 634 arginine decarboxylase; Provisional 98.94
cd06840 368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 98.91
PRK08961 861 bifunctional aspartate kinase/diaminopimelate deca 98.84
PLN02439 559 arginine decarboxylase 98.77
cd06829 346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 98.66
KOG0622 448 consensus Ornithine decarboxylase [Amino acid tran 98.13
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-47  Score=321.93  Aligned_cols=223  Identities=46%  Similarity=0.662  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCC--Cceeeeecc
Q 025987            9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE--DIKWHFVGH   86 (245)
Q Consensus         9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~--~i~~~~lG~   86 (245)
                      .+.+|+..|+++|.++++.++|++..|+|+||+|++.++.++.++++|++.||+|++||+..+.+++..  +|.||+||+
T Consensus         2 ~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~   81 (228)
T COG0325           2 DIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGP   81 (228)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEech
Confidence            378999999999999999999999999999999999999999999999999999999999999999665  499999999


Q ss_pred             CChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCee
Q 025987           87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE  166 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~  166 (245)
                      +|+||++.+++   ++++++|||++..|++|++.|...++ +++|+|+||+++|.+|.|+.|+++..++..+. .+|+|+
T Consensus        82 LQsNK~k~v~~---~~~~ihSlDr~klA~~l~kra~~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~  156 (228)
T COG0325          82 LQSNKVKLVAE---NFDWIHSLDRLKLAKELNKRALELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLE  156 (228)
T ss_pred             hhhhHHHHHHh---hcceeeecCHHHHHHHHHHHHHhCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCe
Confidence            99999999994   69999999999999999999988887 89999999999999999999999999999999 999999


Q ss_pred             EeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCCcc
Q 025987          167 FSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY  239 (245)
Q Consensus       167 l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~p~  239 (245)
                      ++||||+.+.+++  ....+|+.+.++++.+.++ ++  ++..+|||||+||+.++..|.|+||+|++|||.++|
T Consensus       157 l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~-~~--~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~  228 (228)
T COG0325         157 LRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAK-YP--PIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY  228 (228)
T ss_pred             EeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHh-cC--CCCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence            9999999997433  4557888888888988875 44  468899999999999999999999999999999886

>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1b54_A257 Crystal Structure Of A Yeast Hypothetical Protein-A 5e-37
1w8g_A234 Crystal Structure Of E. Coli K-12 Yggs Length = 234 2e-35
1ct5_A256 Crystal Structure Of Yeast Hypothetical Protein Ybl 1e-34
3r79_A244 Crystal Structure Of An Uncharactertized Protein Fr 1e-33
3sy1_A245 Crystal Structure Of Engineered Protein. Northeast 4e-30
3cpg_A282 Crystal Structure Of An Unknown Protein From Bifido 2e-28
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A Structure From Bnl's Human Proteome Project Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 12/212 (5%)
Query: 34  QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
           +I ++ VSK KP S I+ +YD G R FGENYVQE+++KA  LP+DIKWHF+G LQ+NK K
Sbjct: 41  KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 94  TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
             L  VPNL  VE + + K A  L+++ +       P+   VQ+NTS E+ KSG++  + 
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 159
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPEN--FRTLLNCRAEVCKALGMAEDQ 205
           +  V    L   C  ++ +GLMTIG  +  +  + EN  F TL+  + ++    G +   
Sbjct: 160 IFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS--- 216
Query: 206 CELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
            +LSMGMS DF +AI  G+  VRIG+ IFG R
Sbjct: 217 LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs Length = 234 Back     alignment and structure
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-Selenomet Crystal Length = 256 Back     alignment and structure
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From Agrobacterium Tumefaciens Length = 244 Back     alignment and structure
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or70 Length = 245 Back     alignment and structure
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From Bifidobacterium Adolescentis Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 1e-112
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 1e-107
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 1e-101
3r79_A244 Uncharacterized protein; PSI-biology, structural g 8e-93
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Length = 256 Back     alignment and structure
 Score =  321 bits (824), Expect = e-112
 Identities = 91/241 (37%), Positives = 133/241 (55%), Gaps = 14/241 (5%)

Query: 14  LRSVLHRVRQAAE--RSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDK 71
             SV   V   A+         +I ++ VSK KP S I+ +YD G R FGENYVQE+++K
Sbjct: 18  YESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEK 77

Query: 72  APQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDK--AVSNLGRKPL 129
           A  LP+DIKWHF+G LQ+NK K L   VPNL  VE + + K A  L++  A       P+
Sbjct: 78  AKLLPDDIKWHFIGGLQTNKCKDLA-KVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPI 136

Query: 130 KVLVQVNTSGEESKSGIDPSSCLG-IVEHVRLR-CPNLEFSGLMTIGMPDYTSTP----E 183
              VQ+NTS E+ KSG++  + +  +++      C  ++ +GLMTIG  + +        
Sbjct: 137 LCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENR 196

Query: 184 NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 243
           +F TL+  + ++    G      +LSMGMS DF +AI  G+  VRIG+ IFG R    + 
Sbjct: 197 DFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKNEA 253

Query: 244 Q 244
           +
Sbjct: 254 R 254
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Length = 245 Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Length = 282 Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
3r79_A244 Uncharacterized protein; PSI-biology, structural g 100.0
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 100.0
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 100.0
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 100.0
4ecl_A 374 Serine racemase, vantg; antibiotic resistance, van 100.0
4a3q_A 382 Alanine racemase 1; isomerase, PLP-dependent enzym 100.0
3e5p_A 371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 100.0
3mub_A 367 Alanine racemase; alpha/beta barrel, extended beta 100.0
3kw3_A 376 Alanine racemase; niaid, ssgcid, seattle structura 100.0
3hur_A 395 Alanine racemase; structural genomics, isomerase, 100.0
2vd8_A 391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 100.0
1vfs_A 386 Alanine racemase; TIM-barrel, greek-KEY motief, is 100.0
1xfc_A 384 Alanine racemase; alpha-beta barrel, beta-structur 100.0
1bd0_A 388 Alanine racemase; isomerase, pyridoxal phosphate, 100.0
3llx_A 376 Predicted amino acid aldolase or racemase; structu 100.0
3gwq_A 426 D-serine deaminase; structural genomics, joint cen 100.0
2dy3_A 361 Alanine racemase; alpha/beta barrel, isomerase; HE 100.0
3co8_A 380 Alanine racemase; protein structure initiative II, 100.0
2rjg_A 379 Alanine racemase; alpha/beta barrel, cell shape, c 100.0
1rcq_A 357 Catabolic alanine racemase DADX; alpha-beta barrel 100.0
3anu_A 376 D-serine dehydratase; PLP-dependent fold-type III 100.0
2p3e_A 420 Diaminopimelate decarboxylase; southeast collabora 99.97
1twi_A 434 Diaminopimelate decarboxylase; antibiotic resistan 99.94
2qgh_A 425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 99.94
2j66_A 428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 99.92
2plj_A 419 Lysine/ornithine decarboxylase; type IV decarboxyl 99.92
2nva_A 372 Arginine decarboxylase, A207R protein; PLP, TIM ba 99.92
2o0t_A 467 Diaminopimelate decarboxylase; PLP binding enzyme, 99.92
1f3t_A 425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 99.9
2yxx_A 386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 99.89
3vab_A 443 Diaminopimelate decarboxylase 1; structural genomi 99.89
3n2b_A 441 Diaminopimelate decarboxylase; LYSA, lyase, struct 99.89
3btn_A 448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 99.87
2oo0_A 471 ODC, ornithine decarboxylase; beta-alpha barrel, s 99.86
1knw_A 425 Diaminopimelate decarboxylase; pyridoxal-phosphate 99.83
7odc_A 424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 99.82
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 99.72
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 99.69
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 99.65
3mt1_A 365 Putative carboxynorspermidine decarboxylase prote; 99.53
3n29_A 418 Carboxynorspermidine decarboxylase; lyase; HET: PL 99.44
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 85.37
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
Probab=100.00  E-value=7.4e-53  Score=363.11  Aligned_cols=220  Identities=43%  Similarity=0.603  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCC---CCceeeeec
Q 025987            9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP---EDIKWHFVG   85 (245)
Q Consensus         9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~---~~i~~~~lG   85 (245)
                      .|.+|++.|+++|.++++.++|.|++++|+||||+||++.++.++++|+++||||++|||+++|+.+.   .+|.|++||
T Consensus         5 ~i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG   84 (244)
T 3r79_A            5 EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIG   84 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecC
Confidence            48899999999999999999998889999999999999888888999999999999999999999854   368899999


Q ss_pred             cCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCe
Q 025987           86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL  165 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l  165 (245)
                      ++|+++++.+++   .++++++|||+++++.|++.|.+.++ +++||||||||+||+|+|+.|+++.++++.+. ++|+|
T Consensus        85 ~lq~nk~~~~v~---~~~~i~sVds~~~a~~L~~~a~~~g~-~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L  159 (244)
T 3r79_A           85 PLQSNKAADAVA---LFDVVESIDREKIARALSEECARQGR-SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKL  159 (244)
T ss_dssp             CCCGGGHHHHHH---HCSEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCC
T ss_pred             CCCHHHHHHHHH---HCCEEEeeCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCC
Confidence            999999999984   47999999999999999999999998 99999999999999999999999999999999 99999


Q ss_pred             eEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCCccCcc
Q 025987          166 EFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK  242 (245)
Q Consensus       166 ~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~p~~~~  242 (245)
                      +++||||||++.+++. .+|..|.++.+.+    +    ...+|||||+||+.+++.|+|+||||++|||.+||..-
T Consensus       160 ~l~GlmTh~a~~dd~~-~~f~~l~~l~~~l----~----~~~lSmGmS~d~~~Ai~~G~t~vRvGtaIfg~r~~~~~  227 (244)
T 3r79_A          160 PVEGLMCIPPAEENPG-PHFALLAKLAGQC----G----LEKLSMGMSGDFETAVEFGATSVRVGSAIFGSRAENLY  227 (244)
T ss_dssp             CCCEEECCCCTTSCSH-HHHHHHHHHHHHH----T----CCEEECCCTTTHHHHHHTTCSEEEECHHHHCCHHHHHH
T ss_pred             EEEEEEecCCCCCCHH-HHHHHHHHHHHhC----C----CCEEEeecchhHHHHHHcCCCEEEeeHHHhCCCchhhh
Confidence            9999999999855543 6788887766543    2    35799999999999999999999999999999987654
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1ct5a_244 c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker 5e-46
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (382), Expect = 5e-46
 Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 12/234 (5%)

Query: 11  VTALRSVLHRVRQAAE--RSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEI 68
           +    SV   V   A+         +I ++ VSK KP S I+ +YD G R FGENYVQE+
Sbjct: 14  IAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQEL 73

Query: 69  VDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK- 127
           ++KA  LP+DIKWHF+G LQ+NK K L        +      +K     +          
Sbjct: 74  IEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCN 133

Query: 128 PLKVLVQVNTSGEESKSGIDPSSCLG--IVEHVRLRCPNLEFSGLMTIGMPDYTSTPE-- 183
           P+   VQ+NTS E+ KSG++  + +   I   +   C  ++ +GLMTIG  + +      
Sbjct: 134 PILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKE 193

Query: 184 --NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235
             +F TL+  + ++    G      +LSMGMS DF +AI  G+  VRIG+ IFG
Sbjct: 194 NRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGTAEVRIGTDIFG 244

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 100.0
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 100.0
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 100.0
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 100.0
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 99.24
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.19
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 99.08
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 98.88
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 98.78
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Alanine racemase
species: Streptomyces lavendulae [TaxId: 1914]

Probab=100.00  E-value=8.9e-45  Score=309.90  Aligned_cols=212  Identities=15%  Similarity=0.126  Sum_probs=178.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987            6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI   79 (245)
Q Consensus         6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i   79 (245)
                      |-++|++|++.+|+.+           ++++++||||+    ||+..+ +.+.+.|+++|||++++||+++|+. +..||
T Consensus         1 DL~al~~N~~~l~~~~-----------~~~~i~aVVKAnAYGhG~~~ia~~l~~~g~~~f~Va~~~EA~~lR~~g~~~~I   69 (237)
T d1vfsa2           1 DLDAVRANVRALRARA-----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRI   69 (237)
T ss_dssp             EHHHHHHHHHHHHTTS-----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred             CHHHHHHHHHHHHHhC-----------CCCeEEEEEeeccCcCCHHHHHHHHHHcCCCEEEEeecchHHHHHHhccCCCe
Confidence            4578999999998876           35799999999    999776 8888999999999999999999999 55577


Q ss_pred             eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHH---
Q 025987           80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE---  156 (245)
Q Consensus        80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~---  156 (245)
                        ++++.+.++++..+++    ++++++|+|.++++.+.+.++..++ +++||||||||  |+|+||.++|+.++++   
T Consensus        70 --l~l~~~~~~~~~~~~~----~~i~~~i~s~~~l~~l~~~a~~~~~-~~~vhLkiDTG--M~RlG~~~~e~~~l~~~~~  140 (237)
T d1vfsa2          70 --MCWLWTPGGPWREAIE----TDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG--LGRNGCQPADWAELVGAAV  140 (237)
T ss_dssp             --EECCCCTTCCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS--CCSSSBCHHHHHHHHHHHH
T ss_pred             --eeccCCChHHHHHHHH----hcccceeccHHHHHHHHHHHHhcCC-CeeEEEEecCC--CCCCCCChhHHHHHHHHHH
Confidence              6777788888888884    7899999999999999999998898 99999999999  9999999988777665   


Q ss_pred             HHHhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcc
Q 025987          157 HVRLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST  232 (245)
Q Consensus       157 ~i~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~  232 (245)
                      .+. ..++++++||||||++.++    .+..|+++|.++.+.+++ .|+++  ..+|+++|......++.++||||||++
T Consensus       141 ~~~-~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~-~~~~~--~~~h~aNS~~~~~~~~~~~d~vR~Gi~  216 (237)
T d1vfsa2         141 AAQ-AEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEK-EGVDP--EVRHIANSPATLTLPETHFDLVRTGLA  216 (237)
T ss_dssp             HHH-HTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHH-TTCCC--SEEEEECHHHHHHCGGGCSSEEEECGG
T ss_pred             hhh-ccCceeeeeeecccccccchhhhhHHHHHHHHHHHHHHHHH-cCCCC--CcEEeeCCHHHHcCCCcCCCEeCcChh
Confidence            466 7899999999999997332    356799999999999988 48876  444555565544445778999999999


Q ss_pred             ccCCCccCc
Q 025987          233 IFGPREYAK  241 (245)
Q Consensus       233 lyG~~p~~~  241 (245)
                      |||.+|+..
T Consensus       217 lYG~~P~~~  225 (237)
T d1vfsa2         217 VYGVSPSPE  225 (237)
T ss_dssp             GGTCCSCGG
T ss_pred             hcCCCCCCc
Confidence            999999753
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure