Citrus Sinensis ID: 026010

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSGPCRKERYECWRTATATKESKKENYSFKES
Secondary Structure (PSIPRED)
ccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHcccccEEEEEEcccccccccccccEEEEEEcccccccccEEEEEcEEEEEEEEEccccEEEEEEcccHHHHHHHHHccEEEEccccHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccHHcccccccccccccEccccccccccccccccccccccHHHHHHHcccccccccccccEEEcccccccEEEEEEccccEEcccccccEEEEEEcccccccccEEEEccEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHEEEcccccccHccHcccccccccEccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEccc
Coil and Loop (DISEMBL)
mdedaaltgreekTSVKKvskekspkkglkspkkekDVINNVkrkgnndhedAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVEcegesvdlsgdmgavgrilvpgtaegnHEMFLDLKGtiykttlvpsrtfcivsfghsEAKIEAIMNDFIqlkpqsnvyeAETMVEGTldgflfdsedESDKLAKamphqidqndgieeqtnektkvksgpcrkeryECWRTATatkeskkenysfkes
Flexible Loop (DISEMBL)
mdedaaltgreektsvkkvskekspkkglkspkkekdvinnvkrkgnndhedaeediaekrsmlnvSTSTLPLVMSEKLQRTKALVECEGesvdlsgdmgaVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMphqidqndgieeqtnektkvksgpcrkeryecwrtatatkeskkenysfkes
Low Complexity Region (SEG)
MDEDAALTGReektsvkkvskekspkkglkspkkekDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSGPCRKERYECWRTATATKESKKENYSFKES
Disordered region (IsUnstruct)
**********************************************************************************KALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLF********************************************CW*******************
Disordered Region (DISOPRED)
***DAA***************************************************************TLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPG******EMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSED*************************************************************
Disordered Region (DISEMBL)
***********************************KDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQ************RKERYECWRTATAT*************
Disordered Region (DISPRO)
********************************************************************STLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFD****************************************RYECWRTATAT*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSGPCRKERYECWRTATATKESKKENYSFKES
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q9FLU1	454	DNA-binding protein BIN4	yes	no	0.567	0.306	0.690	6e-53

>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 3/142 (2%)

Query: 67  STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 126
           S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIY
Sbjct: 271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT---TGDMYLDLKGTIY 327

Query: 127 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 186
           K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct: 328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query: 187 DKLAKAMPHQIDQNDGIEEQTN 208
           +K AK      DQ+ G EE+TN
Sbjct: 388 NKNAKTAVKPADQSVGTEEETN 409

Component of the DNA topoisomerase VI complex. Binds to DNA. Required for chromatin organization and progression of endoreduplication cycles. The loss of BIN4 activates the ATM- and ATR-dependent DNA damage responses in postmitotic cells and induces the ectopic expression of the mitotic G2/M-specific cyclin B1;1 gene in non-dividing cells.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
359490779	397	PREDICTED: uncharacterized protein LOC10	0.873	0.539	0.616	4e-68
224121130	187	predicted protein [Populus trichocarpa]	0.628	0.823	0.742	6e-62
356507532	380	PREDICTED: uncharacterized protein LOC10	0.751	0.484	0.592	2e-56
357464307	416	DNA-binding protein BIN4 [Medicago trunc	0.742	0.437	0.606	3e-56
218190056	342	hypothetical protein OsI_05847 [Oryza sa	0.877	0.628	0.497	2e-52
45736025	320	unknown protein [Oryza sativa Japonica G	0.734	0.562	0.560	8e-52
115444213	342	Os02g0147700 [Oryza sativa Japonica Grou	0.877	0.628	0.493	9e-52
218189675	473	hypothetical protein OsI_05068 [Oryza sa	0.840	0.435	0.5	1e-51
297812657	492	predicted protein [Arabidopsis lyrata su	0.832	0.414	0.475	1e-51
195625200	364	hypothetical protein [Zea mays] gi|41393	0.665	0.447	0.612	1e-51

>gi|359490779|ref|XP_002269798.2| PREDICTED: uncharacterized protein LOC100252112 [Vitis vinifera] gi|302144012|emb|CBI23117.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/232 (61%), Positives = 176/232 (75%), Gaps = 18/232 (7%)

Query: 2   DEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNND-----HEDA--- 53
           ++DA L+   +++ + + SKEKSPKK +K     +D I++ K+K N+D     H+D    
Sbjct: 144 EKDAVLSENGQESLLNEASKEKSPKKRVKV----EDHISSKKKKANSDMKGKGHDDGTEL 199

Query: 54  -EEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAE 112
            EE+ ++K +   VS S LPLV+SEK+ R+KALVECEGES+DLSGDMGAVGRI++  T  
Sbjct: 200 LEEEASDKHTEPQVS-SGLPLVLSEKVHRSKALVECEGESIDLSGDMGAVGRIVILDTPS 258

Query: 113 GNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVE 172
            NHEMFLDLKGTIYKTT+VPSRTFCIVSFG SEAK+EA+MNDFIQLKPQSNVYEAETMVE
Sbjct: 259 RNHEMFLDLKGTIYKTTIVPSRTFCIVSFGQSEAKVEAVMNDFIQLKPQSNVYEAETMVE 318

Query: 173 GTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVK----SGPCRK 220
           G L+GF FDS+DE+DK+ KA   Q DQN+G EEQTN KTK K    SG  RK
Sbjct: 319 GILEGFSFDSDDEADKMPKASTRQTDQNEGDEEQTNGKTKGKAEKASGVVRK 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121130|ref|XP_002318505.1| predicted protein [Populus trichocarpa] gi|222859178|gb|EEE96725.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 135/159 (84%), Gaps = 5/159 (3%)

Query: 68  TSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYK 127
           TS LPLV+SEK+QR+KALVECEGES+DLSGDMGAVGR+++P T  GN EM+LDLKGTIY+
Sbjct: 1   TSRLPLVLSEKVQRSKALVECEGESIDLSGDMGAVGRVVIPDTPSGNSEMYLDLKGTIYR 60

Query: 128 TTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVE-GTLDGFLFDSEDES 186
           TT+VPSRTFC+VSFG SEAKIEAIMNDFIQLK QSNVYEAETMVE GTL+GF FDSEDE+
Sbjct: 61  TTIVPSRTFCVVSFGQSEAKIEAIMNDFIQLKTQSNVYEAETMVEVGTLEGFSFDSEDET 120

Query: 187 DKLAKAMPHQIDQNDGIEEQTNEKTKVK----SGPCRKE 221
           DK+ KA   Q DQN+G+EE  N KTK K    SG  RK+
Sbjct: 121 DKITKATALQTDQNEGVEEPANGKTKRKPVKSSGVARKK 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507532|ref|XP_003522518.1| PREDICTED: uncharacterized protein LOC100795660 [Glycine max]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 147/194 (75%), Gaps = 10/194 (5%)

Query: 31  SPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNV---STSTLPLVMSEKLQRTKALVE 87
           +P K K++  + K KG  D +  EE+  EK +  NV   S++ LPL++SEK+QRTKAL+E
Sbjct: 151 TPVKGKEIKASAKGKGIGDLKVEEEETCEKPAEPNVRMVSSARLPLMLSEKVQRTKALIE 210

Query: 88  CEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLK------GTIYKTTLVPSRTFCIVSF 141
           C+G+S+DLSGDMGAVGRI++  +  G+ EM LDLK      GTIYKT++VP RTFC+VSF
Sbjct: 211 CQGDSIDLSGDMGAVGRIIISDSPSGDQEMCLDLKDFAVISGTIYKTSIVPCRTFCVVSF 270

Query: 142 GHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQND 201
           G SEAK+EAIMNDFIQLKP SNVYEAETMVEGTLDGF FDS++ES K+ K+  +Q DQN+
Sbjct: 271 GQSEAKVEAIMNDFIQLKPHSNVYEAETMVEGTLDGFFFDSDEESGKIQKST-NQTDQNE 329

Query: 202 GIEEQTNEKTKVKS 215
             EEQ N  +K K+
Sbjct: 330 NAEEQANGNSKGKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464307|ref|XP_003602435.1| DNA-binding protein BIN4 [Medicago truncatula] gi|355491483|gb|AES72686.1| DNA-binding protein BIN4 [Medicago truncatula]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/183 (60%), Positives = 140/183 (76%), Gaps = 1/183 (0%)

Query: 33  KKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGES 92
           K +K  +N   + G+ D E  +E+  EK    NVS+S LPL++SEK+ RTKALVEC+G+S
Sbjct: 198 KGKKTKVNAKGKGGDGDVEVKDEETFEKPVEPNVSSSILPLMLSEKVHRTKALVECQGDS 257

Query: 93  VDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIM 152
           +DLSGDMGAVGR+++  +  G+ EM LDLKGTIYKT+++PSRTFC+VSFG +EAKIEAIM
Sbjct: 258 IDLSGDMGAVGRVIISDSPSGDQEMCLDLKGTIYKTSIIPSRTFCVVSFGQTEAKIEAIM 317

Query: 153 NDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTK 212
           NDFIQL P S+VYEAETMVEGTLDGF FDS++E  K  K   H  DQN+  EEQT  K+K
Sbjct: 318 NDFIQLNPPSDVYEAETMVEGTLDGFSFDSDEEDGKRQKTT-HPSDQNEHAEEQTPGKSK 376

Query: 213 VKS 215
            K+
Sbjct: 377 RKA 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218190056|gb|EEC72483.1| hypothetical protein OsI_05847 [Oryza sativa Indica Group]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 151/227 (66%), Gaps = 12/227 (5%)

Query: 18  KVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHED----------AEEDIAEKRSMLNVS 67
           K  K  +PKK L  P    +       K   D  D          AEED+ +K +  +VS
Sbjct: 100 KPPKRSTPKKKLVKPPSGSNASKVTGPKAGPDQIDDTLEHQEEGVAEEDMQDKLTEHSVS 159

Query: 68  TSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYK 127
              LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  GN E+ LDLKGTIYK
Sbjct: 160 -QRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYK 218

Query: 128 TTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESD 187
           +T+VPSRTFC+VS G +EAKIE+IM+DFIQL+PQSN++EAETM+EGTLDGF FDS++E D
Sbjct: 219 STIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSDEEGD 278

Query: 188 KLAKAMPHQIDQNDGIEEQTNEKTKVKS-GPCRKERYECWRTATATK 233
           KL +    Q DQN+   +Q   KTK K+  P  K + +      ATK
Sbjct: 279 KLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKATK 325

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45736025|dbj|BAD13052.1| unknown protein [Oryza sativa Japonica Group] gi|45736067|dbj|BAD13093.1| unknown protein [Oryza sativa Japonica Group]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 139/182 (76%), Gaps = 2/182 (1%)

Query: 53  AEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAE 112
           AEE++ +K +  +VS   LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  
Sbjct: 123 AEEEMQDKLTEHSVS-QRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPN 181

Query: 113 GNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVE 172
           GN E+ LDLKGTIYK+T+VPSRTFC+VS G +EAKIE+IM+DFIQL+PQSN++EAETM+E
Sbjct: 182 GNQELLLDLKGTIYKSTIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMME 241

Query: 173 GTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKS-GPCRKERYECWRTATA 231
           GTLDGF FDS++E DKL +    Q DQN+   +Q   KTK K+  P  K + +      A
Sbjct: 242 GTLDGFTFDSDEEGDKLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKA 301

Query: 232 TK 233
           TK
Sbjct: 302 TK 303

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115444213|ref|NP_001045886.1| Os02g0147700 [Oryza sativa Japonica Group] gi|113535417|dbj|BAF07800.1| Os02g0147700 [Oryza sativa Japonica Group] gi|215765268|dbj|BAG86965.1| unnamed protein product [Oryza sativa Japonica Group] gi|222622166|gb|EEE56298.1| hypothetical protein OsJ_05371 [Oryza sativa Japonica Group]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 12/227 (5%)

Query: 18  KVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHED----------AEEDIAEKRSMLNVS 67
           K  K  +PKK L  P    +       K   D  D          AEE++ +K +  +VS
Sbjct: 100 KPPKRSTPKKKLVKPPSGSNASKVTGPKAGPDQIDDTLEHQEEGVAEEEMQDKLTEHSVS 159

Query: 68  TSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYK 127
              LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  GN E+ LDLKGTIYK
Sbjct: 160 -QRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYK 218

Query: 128 TTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESD 187
           +T+VPSRTFC+VS G +EAKIE+IM+DFIQL+PQSN++EAETM+EGTLDGF FDS++E D
Sbjct: 219 STIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSDEEGD 278

Query: 188 KLAKAMPHQIDQNDGIEEQTNEKTKVKS-GPCRKERYECWRTATATK 233
           KL +    Q DQN+   +Q   KTK K+  P  K + +      ATK
Sbjct: 279 KLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKATK 325

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189675|gb|EEC72102.1| hypothetical protein OsI_05068 [Oryza sativa Indica Group]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 154/220 (70%), Gaps = 14/220 (6%)

Query: 9   GREEKTSVK----KVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHED---------AEE 55
           G++EK +++    K +K  +PKK +K P           + G +  +D         AE 
Sbjct: 219 GKDEKPTMESNQDKPAKRSTPKKLVKFPSSSNASKVTGPKAGPDQIDDTLEHREEGVAEV 278

Query: 56  DIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNH 115
           D+ +K +  +VS   LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  GN 
Sbjct: 279 DMQDKLTEHSVS-QRLPLIIPDKVQRSKALIECDGDSIDLSGDVGAVGRIVISNSPNGNQ 337

Query: 116 EMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTL 175
           ++ LDLKGTIYK+T+VPSRTFC+VS G +EAKIE+IMNDFIQL+PQSN++EAETMVEGTL
Sbjct: 338 DLLLDLKGTIYKSTIVPSRTFCVVSVGQTEAKIESIMNDFIQLEPQSNLFEAETMVEGTL 397

Query: 176 DGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKS 215
           DGF FDS++E DKL +    Q DQN+   +Q   KTK K+
Sbjct: 398 DGFTFDSDEEGDKLPEPHASQNDQNNEDGDQPKAKTKRKA 437

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812657|ref|XP_002874212.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320049|gb|EFH50471.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/265 (47%), Positives = 162/265 (61%), Gaps = 61/265 (23%)

Query: 2   DEDAALTGREEKTSVKKVSKEKSPK----KGLKSPKK----------EKDVIN------- 40
           DED  L   EE+ +VKKV KEKSPK     G K+PK+          E  VIN       
Sbjct: 186 DEDFVLDATEEEPAVKKVGKEKSPKTKSKSGRKTPKEGNGAQKIFKSEDKVINTTIAEEV 245

Query: 41  ---------------------NVKRKGNNDHEDAEEDIAEKRSM------LNVSTSTLPL 73
                                + ++   ++ +D +  IAE+ +M       + S+S LPL
Sbjct: 246 TMEKSPETKSKSSRKTPKEENSAQKIFKSEDKDTDTTIAEEGTMDQKIKPSSGSSSRLPL 305

Query: 74  VMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKG---------- 123
           V+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKG          
Sbjct: 306 VLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT---GDMYLDLKGINTFSFHVSG 362

Query: 124 TIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSE 183
           TIYK+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+
Sbjct: 363 TIYKSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLTPQSNVYEAETMVEGTLEGFSFESD 422

Query: 184 DESDKLAKAMPHQIDQNDGIEEQTN 208
           DE++K AK      DQ+ G EE+TN
Sbjct: 423 DETNKNAKTASKPADQSGGTEEETN 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195625200|gb|ACG34430.1| hypothetical protein [Zea mays] gi|413935593|gb|AFW70144.1| hypothetical protein ZEAMMB73_185491 [Zea mays]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 130/165 (78%), Gaps = 2/165 (1%)

Query: 52  DAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTA 111
           DAE+D+ +K +  +VS   LPL+  +K+QR+KAL+EC+G+S+DLSGD+GAVGRI+V    
Sbjct: 165 DAEDDVQDKLTGNSVS-QRLPLIFPDKVQRSKALIECDGDSIDLSGDIGAVGRIVVSNGP 223

Query: 112 EGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMV 171
               ++ LDLKGTIYKTT+VPSRTFC+VS G SEAKIEAIMNDFIQL+PQSN++EAETMV
Sbjct: 224 TAKQDLLLDLKGTIYKTTIVPSRTFCVVSVGQSEAKIEAIMNDFIQLEPQSNLFEAETMV 283

Query: 172 EGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEE-QTNEKTKVKS 215
           EGTLDGF FDS++E DKL +   +Q D N+  +E Q   KTK K+
Sbjct: 284 EGTLDGFTFDSDEEGDKLYEPQANQNDLNNNEDEGQPKAKTKRKA 328

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2153939	454	BIN4 "AT5G24630" [Arabidopsis	0.595	0.321	0.684	2.5e-49

TAIR|locus:2153939 BIN4 "AT5G24630" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 102/149 (68%), Positives = 124/149 (83%)

Query:    67 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 126
             S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T  G  +M+LDLKGTIY
Sbjct:   271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-G--DMYLDLKGTIY 327

Query:   127 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 186
             K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct:   328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query:   187 DKLAKAMPHQIDQNDGIEEQTNEKTKVKS 215
             +K AK      DQ+ G EE+TN K K K+
Sbjct:   388 NKNAKTAVKPADQSVGTEEETNTKAKPKA 416


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       219   0.00092  112 3  11 23  0.47    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  164 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.64u 0.11s 22.75t   Elapsed:  00:00:01
  Total cpu time:  22.64u 0.11s 22.75t   Elapsed:  00:00:01
  Start:  Thu May  9 15:12:32 2013   End:  Thu May  9 15:12:33 2013

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA;IMP

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0051276 "chromosome organization" evidence=RCA;IMP

GO:0000003 "reproduction" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037138001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (262 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 24/196 (12%), Positives = 65/196 (33%), Gaps = 55/196 (28%)

Query: 37  DVINNVKRK--GNNDHEDAEEDIAEKRSM----LNVSTSTL--------PLVMS---EKL 79
           D ++         + H        E +S+    L+     L        P  +S   E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 80  QRTKAL------VECE--GESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY-KTTL 130
           +   A       V C+     ++ S +      +L P       +MF  L  +++  +  
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLN------VLEPAEYR---KMFDRL--SVFPPSAH 386

Query: 131 VPSRTFCIVSFGHSEAKIEAIMNDF-----IQLKPQSNVYEAETMVEGTLDGFLFDSEDE 185
           +P+    ++ F   ++ +  ++N       ++ +P+ +          ++     + + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--------SIPSIYLELKVK 438

Query: 186 SDKLAKAMPHQ--IDQ 199
            +       H+  +D 
Sbjct: 439 LENEYAL--HRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00