Citrus Sinensis ID: 026014

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MTRKELASEARERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccHccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTRKELASEARERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYastsistgmRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDetldkdeaEEETEELTNQVLDEIGVDIasqlssapkgriasrnapnavanapktntssesadVEDLEKRFASLRRI
Flexible Loop (DISEMBL)
mtrkelasearERTMKIlkktmnifrkkttpkealreskrdmatatrGVEREIAALQLEEKKLVAEIKKtaktgneaATRILARQLVRLRQQITNlqgsraqirgvATHTQALyastsistgmRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLssapkgriasrnapnavanapktntssesadvedLEKRFASLRRI
Low Complexity Region (SEG)
MTRKELASEARERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIdetldkdeaeeeteeltNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI
Disordered region (IsUnstruct)
*******************************************************L*****KLVAEIK*****GNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYAST*******************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************************************************************LARQLVRLRQQITNLQGSRAQIRGVATHTQ***************TKAMVAMNQ*MKPAKQAKLIK**************************DEAEEETEELTNQVLDEIGVDIA****************************************RFASLRR*
Disordered Region (DISEMBL)
**********RERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDET*************TNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVA****************LEKRFASLRRI
Disordered Region (DISPRO)
************RTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS*******************************DLEKRFASLR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRKELASEARERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSExxxxxxxxxxxxxxxxxxxxxVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q0WTY4	222	Vacuolar protein sorting-	yes	no	0.909	1.0	0.816	3e-99
Q941D5	210	Vacuolar protein sorting-	no	no	0.860	1.0	0.674	5e-83
Q54DB1	198	Charged multivesicular bo	yes	no	0.795	0.979	0.411	3e-39
Q9SKI2	225	Vacuolar protein sorting-	no	no	0.909	0.986	0.423	2e-37
Q6NXD2	214	Charged multivesicular bo	yes	no	0.856	0.976	0.360	3e-32
Q66IV6	214	Charged multivesicular bo	N/A	no	0.782	0.892	0.369	8e-32
Q3SX42	213	Charged multivesicular bo	yes	no	0.852	0.976	0.347	2e-31
Q8BJF9	213	Charged multivesicular bo	yes	no	0.852	0.976	0.347	2e-31
Q5RAV2	213	Charged multivesicular bo	yes	no	0.852	0.976	0.342	6e-31
Q9UQN3	213	Charged multivesicular bo	yes	no	0.852	0.976	0.342	6e-31

>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2

 Score =  361 bits (926), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 182/223 (81%), Positives = 206/223 (92%), Gaps = 1/223 (0%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKTTPK+ALR SKR+MA ATRG+EREI +LQLEEK+LVAEIKKTAKTGNEAAT+I
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+IK+FQKQSAQ+DMTIEMMSE+IDETLDKDEAEEETE+LTNQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIA++ A    A+   TN +SES++V++LEKR ASLRRI
Sbjct: 181 APKGRIATKTA-APPASTAATNKNSESSEVDELEKRLASLRRI 222

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1

 Score =  307 bits (786), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 149/221 (67%), Positives = 183/221 (82%), Gaps = 11/221 (4%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF KK  P+E LRESKR+M  ATRG+E+EI +LQ EEKKLV EIK+TAK+GNE AT+I
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS++ GM+GATKAM AM++ M PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+++EFQKQSAQMDMT EMMS+SID+ LD DEAE+ETE+LTNQVLDEIG+DIASQLSS
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
           APKG+I  + A +             S+ +++LEKR A+LR
Sbjct: 181 APKGKIGGKKAEDV-----------GSSGIDELEKRLAALR 210

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 134/197 (68%), Gaps = 3/197 (1%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           M +F K+ TPKE LRE++R++  + R ++RE  ALQ +EKK++ +IKK AK G   + +I
Sbjct: 1   MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           +A+ LVR R  I      + Q++ V+   Q L ++ +++  M+G TKAM+ MN+QM   +
Sbjct: 61  MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQ 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
             K++ EF++QS +MDM  EMM++++D+ +++D  EE+++E+ NQVLDEIG+D+ASQL  
Sbjct: 121 FTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVD 180

Query: 202 AP---KGRIASRNAPNA 215
           AP      +AS++  N+
Sbjct: 181 APTTVGTSVASKHQVNS 197

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 141/222 (63%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           +IF K+ TP E LRE+KR +  + R +ERE   LQ +EKKL+ EIKKTAK G   A +++
Sbjct: 4   SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVM 63

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+ L+R R QI      ++Q++GV+   Q L ++ ++   M+G TKAM  MN+QM     
Sbjct: 64  AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 123

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            K+++EF++Q+ +M+M  E+M ++ID+ L+ DE EEETE+L +QVLDEIG+DI  +L +A
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA 183

Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           P G +A   A N V  A  T          DL+ R  +LR++
Sbjct: 184 PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 139/219 (63%), Gaps = 10/219 (4%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           ++F+KKT   + ++E  +++    R + R+  AL+ +EK+L  EIKK AKTGN  A ++L
Sbjct: 3   SLFKKKTVD-DVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVL 61

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+QLV++R+Q T      +++  ++T T+ + +   ++  M   TK M A+N++M P K 
Sbjct: 62  AKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKT 121

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            + ++ FQK++A+MDMT EMM++++DE  +    EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 MQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHA 181

Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
           P    A+R  P+A A A     S      ED+E++  +L
Sbjct: 182 PS---AARKTPSA-ATAKADGISD-----EDIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 129/195 (66%), Gaps = 4/195 (2%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           ++F+KKT   + +RE  +++    R + R+ AAL+ +EK+L  EIKK AKTGN+ A R+L
Sbjct: 3   SLFKKKTVD-DIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVL 61

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+QLV+LR+Q T      +++  ++T T+ + +   ++  M    K M A+N++M P K 
Sbjct: 62  AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            + ++ FQK++ +M+MT EM+++++D+  D  E EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 203 PKGRIASRNAPNAVA 217
           P    A++  P+  A
Sbjct: 182 PS---AAKGLPSTSA 193

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           ++F+KKT   + ++E  R++    R + R+ AAL+ +EK+L  EIKK AK GN+ A R+L
Sbjct: 3   SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVL 61

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+QLV LR+Q T      +++  ++T T+ + +   ++  M    K M A+N++M P K 
Sbjct: 62  AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            + ++ FQK++ +M+MT EM+++++D+  D  + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
           P    A+R+ P+A       +TS  +   E++E++  +L
Sbjct: 182 PS---AARSLPSA-------STSKSTISDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Bos taurus (taxid: 9913)

>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           ++F+KKT   + ++E  R++    R + R+ AAL+ +EK+L  EIKK AK GN+ A R+L
Sbjct: 3   SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVL 61

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+QLV LR+Q T      +++  ++T T+ + +   ++  M    K M A+N++M P K 
Sbjct: 62  AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            + ++ FQK++ +M+MT EM+++++D+  D  + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
           P    A+R+ P+A       +TS  +   E++E++  +L
Sbjct: 182 PS---AARSLPSA-------STSKATISDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           ++F+KKT   + ++E  R++    R + R+ AAL+ +EK+L  EIKK AK GN+ A ++L
Sbjct: 3   SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVL 61

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+QLV LR+Q T      +++  ++T T+ + +   ++  M    K M A+N++M P K 
Sbjct: 62  AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            + ++ FQK++ +M+MT EM+++++D+  D  + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
           P    A+R+ P+A       +TS  +   E++E++  +L
Sbjct: 182 PS---AARSLPSA-------STSKATISDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)

Query: 23  NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
           ++F+KKT   + ++E  R++    R + R+ AAL+ +EK+L  EIKK AK GN+ A ++L
Sbjct: 3   SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVL 61

Query: 83  ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
           A+QLV LR+Q T      +++  ++T T+ + +   ++  M    K M A+N++M P K 
Sbjct: 62  AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
            + ++ FQK++ +M+MT EM+++++D+  D  + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
           P    A+R+ P+A       +TS  +   E++E++  +L
Sbjct: 182 PS---AARSLPSA-------STSKATISDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
449434208	410	PREDICTED: vacuolar protein sorting-asso	0.885	0.526	0.860	1e-100
217071614	216	unknown [Medicago truncatula] gi|3885147	0.885	1.0	0.860	3e-99
297790129	223	predicted protein [Arabidopsis lyrata su	0.913	1.0	0.811	1e-98
225444235	216	PREDICTED: vacuolar protein sorting-asso	0.885	1.0	0.860	1e-98
356530521	219	PREDICTED: vacuolar protein sorting-asso	0.889	0.990	0.860	4e-98
15241525	222	vacuolar protein sorting-associated prot	0.909	1.0	0.816	2e-97
388521965	219	unknown [Lotus japonicus]	0.889	0.990	0.852	5e-97
356556495	217	PREDICTED: vacuolar protein sorting-asso	0.889	1.0	0.856	7e-97
110743043	222	hypothetical protein [Arabidopsis thalia	0.909	1.0	0.807	1e-96
224115556	212	predicted protein [Populus trichocarpa]	0.868	1.0	0.852	2e-96

>gi|449434208|ref|XP_004134888.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Cucumis sativus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 207/223 (92%), Gaps = 7/223 (3%)

Query: 21  TMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATR 80
           ++NIFRKKT+PK+ALR SKR+MA ATRG+EREI++LQLEE+KLVAEIK+TAKTGNEAATR
Sbjct: 2   SLNIFRKKTSPKDALRTSKREMAVATRGIEREISSLQLEERKLVAEIKQTAKTGNEAATR 61

Query: 81  ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPA 140
           ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PA
Sbjct: 62  ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPA 121

Query: 141 KQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLS 200
           KQAK+IKEFQKQSAQ+DMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLS
Sbjct: 122 KQAKVIKEFQKQSAQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLS 181

Query: 201 SAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243
           SAPKGRIA+R   N VA       SSES DVEDLEKR ASLRR
Sbjct: 182 SAPKGRIAARKTENTVA-------SSESPDVEDLEKRLASLRR 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071614|gb|ACJ84167.1| unknown [Medicago truncatula] gi|388514703|gb|AFK45413.1| unknown [Medicago truncatula]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 210/223 (94%), Gaps = 7/223 (3%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKTTPKEALR+SKR+M+ ATRG+EREIA+LQ+EEKKLVAEIK+ AKTGNEA+T+I
Sbjct: 1   MNIFKKKTTPKEALRQSKREMSVATRGIEREIASLQMEEKKLVAEIKREAKTGNEASTKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PAK
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+I+EFQKQSAQ+DMTIEMMSESIDETLDKDEAEEE+EELTNQVLDEIGVDIASQLSS
Sbjct: 121 QAKVIQEFQKQSAQLDMTIEMMSESIDETLDKDEAEEESEELTNQVLDEIGVDIASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIASRNA NA   AP+    SES DVE+LEKR ASLRRI
Sbjct: 181 APKGRIASRNAENA---APR----SESQDVEELEKRLASLRRI 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790129|ref|XP_002862972.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297308761|gb|EFH39231.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 181/223 (81%), Positives = 205/223 (91%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKTTPK+ALR SKR+MA ATRG+EREI +LQLEEK+LVAEIKKTAKTGNEAAT+I
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+IK+FQKQSAQ+DMTIEMMSE+IDETLDKDEAEEETE+LTNQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIA++ A    + A   N +SES++V++LEKR ASLRRI
Sbjct: 181 APKGRIATKTAAPPASTAATKNNNSESSEVDELEKRLASLRRI 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444235|ref|XP_002277559.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Vitis vinifera]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 204/223 (91%), Gaps = 7/223 (3%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIFRKKT+PK+ALR SKR+M+ ATRG+EREI++LQLEEKKLVAEIKKTAKTGNEAATRI
Sbjct: 1   MNIFRKKTSPKDALRTSKREMSVATRGIEREISSLQLEEKKLVAEIKKTAKTGNEAATRI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PAK
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           Q K+IKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS
Sbjct: 121 QVKVIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRI S+   N V        SSES DVE+LEKR ASLRRI
Sbjct: 181 APKGRIGSKKVENVVP-------SSESPDVEELEKRLASLRRI 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530521|ref|XP_003533829.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Glycine max]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 206/223 (92%), Gaps = 6/223 (2%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKT+PKEALR SKR+MA ATRG+EREIA+LQ+EEKKLVAEIK+ AKTGNEAATRI
Sbjct: 3   MNIFKKKTSPKEALRSSKREMAVATRGIEREIASLQMEEKKLVAEIKREAKTGNEAATRI 62

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PAK
Sbjct: 63  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 122

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           Q K+IKEFQKQSAQ+DMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS
Sbjct: 123 QVKVIKEFQKQSAQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 182

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIASRN  N    AP+    +ES DVE+LEKR ASLRRI
Sbjct: 183 APKGRIASRNTENV---APR---PAESQDVEELEKRLASLRRI 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241525|ref|NP_199269.1| vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana] gi|226698193|sp|Q0WTY4.2|VPS2B_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 2; Short=AtVPS2-2; AltName: Full=Charged multivesicular body protein 2 homolog 2; AltName: Full=ESCRT-III complex subunit VPS2 homolog 2 gi|332007740|gb|AED95123.1| vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/223 (81%), Positives = 206/223 (92%), Gaps = 1/223 (0%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKTTPK+ALR SKR+MA ATRG+EREI +LQLEEK+LVAEIKKTAKTGNEAAT+I
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+IK+FQKQSAQ+DMTIEMMSE+IDETLDKDEAEEETE+LTNQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIA++ A    A+   TN +SES++V++LEKR ASLRRI
Sbjct: 181 APKGRIATKTA-APPASTAATNKNSESSEVDELEKRLASLRRI 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521965|gb|AFK49044.1| unknown [Lotus japonicus]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/223 (85%), Positives = 207/223 (92%), Gaps = 6/223 (2%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           +NIF+KKT+PKEALR SKR+MA ATRG+E+EIA+LQ+EE+KLVAEIK+TAKTGNEAATRI
Sbjct: 3   LNIFKKKTSPKEALRSSKREMAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRI 62

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PAK
Sbjct: 63  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 122

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+I+EFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ SS
Sbjct: 123 QAKVIQEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQSSS 182

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRI SR+A N    AP+    +ES DVEDLEKR ASLRRI
Sbjct: 183 APKGRIGSRSAENV---APR---PAESNDVEDLEKRLASLRRI 219

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556495|ref|XP_003546560.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Glycine max]

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 204/223 (91%), Gaps = 6/223 (2%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKT+PKEALR SKR+MA ATRG+EREI +LQ+EEKKLVAEIK+ AKTGNEAATRI
Sbjct: 1   MNIFKKKTSPKEALRTSKREMAVATRGIEREITSLQMEEKKLVAEIKREAKTGNEAATRI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PAK
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           Q K+IKEFQKQSAQ+DMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS
Sbjct: 121 QVKVIKEFQKQSAQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIAS N  N    AP+    +ES DVEDLEKR ASLRRI
Sbjct: 181 APKGRIASINTENV---APR---PAESQDVEDLEKRLASLRRI 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743043|dbj|BAE99414.1| hypothetical protein [Arabidopsis thaliana]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/223 (80%), Positives = 205/223 (91%), Gaps = 1/223 (0%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKTTPK+ALR SKR+MA ATRG+EREI +LQLEEK+LVAEIKKTAKTGNEAAT+I
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
           LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+IK+FQKQSAQ+DMTIEMMSE+IDETLDKDEAEEETE+LTNQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIA++ A    + A  +  +SES++V++LEKR ASLRRI
Sbjct: 181 APKGRIATKTAAPPASTAATSK-NSESSEVDELEKRLASLRRI 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115556|ref|XP_002317065.1| predicted protein [Populus trichocarpa] gi|222860130|gb|EEE97677.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/223 (85%), Positives = 201/223 (90%), Gaps = 11/223 (4%)

Query: 22  MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
           MNIF+KKT+PKEALR SKRDM  ATRG+EREIA+LQLEEKKLVAEIK+TAKTGNEA    
Sbjct: 1   MNIFKKKTSPKEALRTSKRDMVVATRGIEREIASLQLEEKKLVAEIKQTAKTGNEAT--- 57

Query: 82  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
             RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM+GATKAMVAMN+QM PAK
Sbjct: 58  --RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 115

Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           QAK+IKEFQKQSAQMDMTIEMMSE+IDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS
Sbjct: 116 QAKVIKEFQKQSAQMDMTIEMMSEAIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 175

Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
           APKGRIAS+NAP      P   TS ES +VEDLEKR ASLRRI
Sbjct: 176 APKGRIASKNAP------PNAVTSPESTNVEDLEKRLASLRRI 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2163396	222	VPS2.2 [Arabidopsis thaliana (	0.909	1.0	0.744	1.6e-79
TAIR|locus:2024107	210	VPS2.3 "vacuolar protein sorti	0.860	1.0	0.619	5.2e-65
TAIR|locus:2054612	225	VPS2.1 [Arabidopsis thaliana (	0.913	0.991	0.383	1.3e-36
DICTYBASE|DDB_G0292400	198	vps2B "SNF7 family protein" [D	0.795	0.979	0.390	1.4e-32
MGI|MGI:1916203	222	Chmp2a "charged multivesicular	0.885	0.972	0.373	1.6e-31
RGD|1305050	222	Chmp2a "charged multivesicular	0.885	0.972	0.373	1.6e-31
ZFIN|ZDB-GENE-040426-2922	220	bc2 "putative breast adenocarc	0.885	0.981	0.355	2.6e-31
UNIPROTKB|O43633	222	CHMP2A "Charged multivesicular	0.885	0.972	0.351	4.2e-31
UNIPROTKB|E2RIU2	222	CHMP2A "Uncharacterized protei	0.881	0.968	0.363	6.9e-31
UNIPROTKB|Q3T0U5	222	CHMP2A "Chromatin modifying pr	0.889	0.977	0.371	8.8e-31

TAIR|locus:2163396 VPS2.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 166/223 (74%), Positives = 189/223 (84%)

Query:    22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
             MNIF+KKTTPK+ALR SKR+MA ATRG+EREI +LQLEEK+LVAEIKKTAKTGNEAAT+I
Sbjct:     1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query:    82 LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
             LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P K
Sbjct:    61 LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query:   142 QAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSS 201
             QAK+IK+FQKQSAQ+DMTIEMMSE+I                 NQVLDEIGV +ASQLSS
Sbjct:   121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query:   202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
             APKGRIA++ A    + A  TN +SES++V++LEKR ASLRRI
Sbjct:   181 APKGRIATKTAAPPASTAA-TNKNSESSEVDELEKRLASLRRI 222

GO:0005634 "nucleus" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2024107 VPS2.3 "vacuolar protein sorting-associated protein 2.3" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 137/221 (61%), Positives = 168/221 (76%)

Query:    22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
             MNIF KK  P+E LRESKR+M  ATRG+E+EI +LQ EEKKLV EIK+TAK+GNE AT+I
Sbjct:     1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query:    82 LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
             LARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS++ GM+GATKAM AM++ M PAK
Sbjct:    61 LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query:   142 QAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSS 201
             QAK+++EFQKQSAQMDMT EMMS+SI                 NQVLDEIG+DIASQLSS
Sbjct:   121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query:   202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
             APKG+I  + A +             S+ +++LEKR A+LR
Sbjct:   181 APKGKIGGKKAEDV-----------GSSGIDELEKRLAALR 210

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

TAIR|locus:2054612 VPS2.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 86/224 (38%), Positives = 129/224 (57%)

Query:    22 MN-IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATR 80
             MN IF K+ TP E LRE+KR +  + R +ERE   LQ +EKKL+ EIKKTAK G   A +
Sbjct:     2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query:    81 ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPA 140
             ++A+ L+R R QI      ++Q++GV+   Q L ++ ++   M+G TKAM  MN+QM   
Sbjct:    62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query:   141 KQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLS 200
                K+++EF++Q+ +M+M  E+M ++I                 +QVLDEIG+DI  +L 
Sbjct:   122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query:   201 SAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
             +AP G +A   A N V  A  T          DL+ R  +LR++
Sbjct:   182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

GO:0015031 "protein transport" evidence=IEA;IMP

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0292400 vps2B "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 77/197 (39%), Positives = 122/197 (61%)

Query:    22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
             M +F K+ TPKE LRE++R++  + R ++RE  ALQ +EKK++ +IKK AK G   + +I
Sbjct:     1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60

Query:    82 LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
             +A+ LVR R  I      + Q++ V+   Q L ++ +++  M+G TKAM+ MN+QM   +
Sbjct:    61 MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQ 120

Query:   142 QAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSS 201
               K++ EF++QS +MDM  EMM++++                 NQVLDEIG+D+ASQL  
Sbjct:   121 FTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVD 180

Query:   202 APK--GR-IASRNAPNA 215
             AP   G  +AS++  N+
Sbjct:   181 APTTVGTSVASKHQVNS 197

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1916203 Chmp2a "charged multivesicular body protein 2A" [Mus musculus (taxid:10090)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 83/222 (37%), Positives = 130/222 (58%)

Query:    24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
             +F ++ TP+E LR+++R +  A R ++RE   L+ +EKK++A+IKK AK G   A RI+A
Sbjct:     4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63

Query:    84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
             + LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  
Sbjct:    64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123

Query:   144 KLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
             K++ EF++Q+  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P
Sbjct:   124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183

Query:   204 K-GRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 243
               G   S  A    A A    T+S  AD + DLE+R  +LRR
Sbjct:   184 STGGSLSVAAGGKKAEA----TASALADADADLEERLKNLRR 221

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

RGD|1305050 Chmp2a "charged multivesicular body protein 2A" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 83/222 (37%), Positives = 130/222 (58%)

Query:    24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
             +F ++ TP+E LR+++R +  A R ++RE   L+ +EKK++A+IKK AK G   A RI+A
Sbjct:     4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63

Query:    84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
             + LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  
Sbjct:    64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123

Query:   144 KLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
             K++ EF++Q+  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P
Sbjct:   124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183

Query:   204 K-GRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 243
               G   S  A    A A    T+S  AD + DLE+R  +LRR
Sbjct:   184 STGGSLSVAAGGKKAEA----TASALADADADLEERLKNLRR 221

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-2922 bc2 "putative breast adenocarcinoma marker" [Danio rerio (taxid:7955)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 79/222 (35%), Positives = 129/222 (58%)

Query:    23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
             ++F ++ TP+E LR+++R +  A R ++RE   L+ +EKK++A+IKK AK G   A +I+
Sbjct:     3 SLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIM 62

Query:    83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
             A+ LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  + 
Sbjct:    63 AKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQI 122

Query:   143 AKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSA 202
              K++ EF++QS  MDM  EMM+++I                 +QVLDE+G+ ++ +LS+ 
Sbjct:   123 QKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNL 182

Query:   203 PKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 243
             P     +     +VA   K       AD + DLE+R  +LRR
Sbjct:   183 P-----ATGGSLSVAAGKKAEPQPTLADADADLEERLNNLRR 219

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|O43633 CHMP2A "Charged multivesicular body protein 2a" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 78/222 (35%), Positives = 131/222 (59%)

Query:    24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
             +F ++ TP+E LR+++R +  A R ++RE   L+ +EKK++A+IKK AK G   A RI+A
Sbjct:     4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63

Query:    84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
             + LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  
Sbjct:    64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123

Query:   144 KLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
             K++ EF++Q+  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P
Sbjct:   124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183

Query:   204 KGRIASRNAPNAVANAPKTNTSSES-ADVE-DLEKRFASLRR 243
                 ++  + +  A   K   ++ + AD + DLE+R  +LRR
Sbjct:   184 ----STGGSLSVAAGGKKAEAAASALADADADLEERLKNLRR 221

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

UNIPROTKB|E2RIU2 CHMP2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 81/223 (36%), Positives = 131/223 (58%)

Query:    24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
             +F ++ TP+E LR+++R +  A R ++RE   L+ +EKK++A+IKK AK G   A RI+A
Sbjct:     4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63

Query:    84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
             + LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  
Sbjct:    64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123

Query:   144 KLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
             K++ EF++Q+  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P
Sbjct:   124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183

Query:   204 KGRIASRNAPNAVANAPKTNTSSESADVE---DLEKRFASLRR 243
                  S     +VA + K   ++ SA V+   DLE+R  +LRR
Sbjct:   184 -----STGGSLSVAASGKKAEAAASALVDADADLEERLKNLRR 221

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q3T0U5 CHMP2A "Chromatin modifying protein 2A" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 82/221 (37%), Positives = 128/221 (57%)

Query:    24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
             +F ++ TP+E LR+++R +  A R ++RE   L+ +EKK++A+IKK AK G   A RI+A
Sbjct:     4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63

Query:    84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
             + LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  
Sbjct:    64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123

Query:   144 KLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
             K++ EF++Q+  MDM  EMM+++I                  QVLDE+G+ +  +LS+ P
Sbjct:   124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVAQVLDELGLSLTDELSNLP 183

Query:   204 K-GRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243
               G   S  A    A A  T ++   AD  DLE+R  +LRR
Sbjct:   184 STGGSLSVAAGGKKAEA--TASALVDADA-DLEERLKNLRR 221

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NXD2	CHM2B_DANRE	No assigned EC number	0.3607	0.8565	0.9766	yes	no
Q0WTY4	VPS2B_ARATH	No assigned EC number	0.8161	0.9098	1.0	yes	no
Q5RAV2	CHM2B_PONAB	No assigned EC number	0.3424	0.8524	0.9765	yes	no
Q6NVL7	CHM2B_XENTR	No assigned EC number	0.35	0.8524	0.9719	yes	no
Q9UQN3	CHM2B_HUMAN	No assigned EC number	0.3424	0.8524	0.9765	yes	no
Q5F3A2	CHM2B_CHICK	No assigned EC number	0.3424	0.8565	0.9766	yes	no
Q3SX42	CHM2B_BOVIN	No assigned EC number	0.3470	0.8524	0.9765	yes	no
Q8BJF9	CHM2B_MOUSE	No assigned EC number	0.3470	0.8524	0.9765	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0066_3	annotation not avaliable (223 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh1_pg.C_scaffold_3002983	annotation not avaliable (186 aa)					•	•	•		0.435

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam03357	169	pfam03357, Snf7, Snf7	8e-33
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	7e-05

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  116 bits (294), Expect = 8e-33
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 2/171 (1%)

Query: 37  ESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNL 96
           E+   +  A R ++++  +L+ + KKL AEIKK AK GN+ A  IL +Q  R  +Q+  L
Sbjct: 1   EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60

Query: 97  QGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQM 156
            G  A +  V    +    +  +   M+G  KAM AMN+ M   K   L+ E + Q  + 
Sbjct: 61  DGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKA 120

Query: 157 DMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRI 207
           D   EM+S+++D+    +E EEE +   + +LDEIG +   +L SAP G +
Sbjct: 121 DEISEMLSDTLDDA--DEEDEEELDAELDALLDEIGDEELVELPSAPSGAL 169

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 22/202 (10%)

Query: 56  LQLEEKKLVAEIKKTAKTGNEAAT---------RILARQLVRLRQQITNLQGSRAQIRGV 106
           L+ + KKLV E+K+ AK G              R LA +L +LR+  + L  S ++++ +
Sbjct: 5   LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSL 64

Query: 107 ATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMT---IEMM 163
            T          +S  M  A   M  +          ++++ F+ Q   +++    +E M
Sbjct: 65  DTMLFEKVVMRQVSGDMAKAAMYMNELES------IRRIMQLFETQFLALELVQLRLETM 118

Query: 164 SESIDETLDKDEAE--EETEELTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPK 221
            E +D  +     E  EE +EL N+VL EIG+++     S P       N     A +P+
Sbjct: 119 DELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPA--NVVENGSVPAAVSPE 176

Query: 222 TNTSSESADVEDLEKRFASLRR 243
                E A+    ++    LR 
Sbjct: 177 ARKILEEAEKIAEDRLQERLRE 198

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.92
KOG1656	221	consensus Protein involved in glucose derepression	99.9
PTZ00464	211	SNF-7-like protein; Provisional	99.89
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.82
KOG2910	209	consensus Uncharacterized conserved protein predic	99.71
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.57
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.51
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.23
PRK10698	222	phage shock protein PspA; Provisional	98.07
KOG1656	221	consensus Protein involved in glucose derepression	97.97
PTZ00464	211	SNF-7-like protein; Provisional	97.94
COG5491	204	VPS24 Conserved protein implicated in secretion [C	97.92
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	97.79
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	97.76
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	97.67
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.63
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	97.56
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.3
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.2
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	96.56
KOG2910	209	consensus Uncharacterized conserved protein predic	96.36
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	96.33
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	95.67
KOG1655	218	consensus Protein involved in vacuolar protein sor	95.09
KOG2911	439	consensus Uncharacterized conserved protein [Funct	88.16
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	82.48

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-53  Score=353.60  Aligned_cols=223  Identities=49%  Similarity=0.659  Sum_probs=202.1

Q ss_pred             HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRA  101 (244)
Q Consensus        22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a  101 (244)
                      |++||++++|.|.+|+++|.|.+++|+|+|++.+++-++|++..+||+.+|.|+++++||+|++|||.|+|+.+|+.+++
T Consensus         1 m~lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka   80 (224)
T KOG3230|consen    1 MDLFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA   80 (224)
T ss_pred             CCcccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHH
Q 026014          102 QIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETE  181 (244)
Q Consensus       102 ql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d  181 (244)
                      ||.+|+.++|+.+++..++.+|+.++++|..||+.||+|+++++|.+|++|.+.|++.+|||+|++|++++++++|+|.|
T Consensus        81 qiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd  160 (224)
T KOG3230|consen   81 QIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETD  160 (224)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHHHhcchhhhhcccCCCCcccCCCCCc-cccCCCCCCCCCCCccHHHHHHHHHhhhCC
Q 026014          182 ELTNQVLDEIGVDIASQLSSAPKGRIASRNAPN-AVANAPKTNTSSESADVEDLEKRFASLRRI  244 (244)
Q Consensus       182 ~lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ddL~~RL~aLr~~  244 (244)
                      ++|+|||||+|++++.+|.++|++..+.|.+.. -...+++++.+.....+|||++||++||+.
T Consensus       161 ~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk~  224 (224)
T KOG3230|consen  161 DLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRKD  224 (224)
T ss_pred             HHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhcC
Confidence            999999999999999999999995433332211 011122233334456789999999999974

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-45  Score=306.83  Aligned_cols=220  Identities=28%  Similarity=0.435  Sum_probs=192.4

Q ss_pred             HcCC--CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           24 IFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRA  101 (244)
Q Consensus        24 lFg~--k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a  101 (244)
                      +||+  +|||||++|+|++.||++.|+|||++..+++++++.+..||+++|+||+..|++||+++++.||++.+||..+|
T Consensus         3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA   82 (227)
T KOG3229|consen    3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA   82 (227)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4554  68999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHH
Q 026014          102 QIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETE  181 (244)
Q Consensus       102 ql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d  181 (244)
                      ||+||.++|..+.++..++++|.+++.+|+.||+++.+|+|..||.+|+++|+++|+|+||++++|+++.|.++.++++|
T Consensus        83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d  162 (227)
T KOG3229|consen   83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD  162 (227)
T ss_pred             HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHHHHHHHhcchhhhhcccCCCCcccCCCCCccccCCC---CCCCCCCCccHHHHHHHHHhhhC
Q 026014          182 ELTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAP---KTNTSSESADVEDLEKRFASLRR  243 (244)
Q Consensus       182 ~lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ddL~~RL~aLr~  243 (244)
                      ++|++||.+|+.+-.+.+|.+|.......+++.+.|.+.   ...+.+.++++.+++.||++||+
T Consensus       163 eEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  163 EEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             HHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            999999999997777777766665422211122222111   11111224567899999999996

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-41  Score=275.11  Aligned_cols=207  Identities=39%  Similarity=0.627  Sum_probs=193.0

Q ss_pred             HHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQ  102 (244)
Q Consensus        23 ~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq  102 (244)
                      ++|+++ ||+++.|++.|.||++.|.|+|++.+++++|++++.+||+.++.||.++||++|++||..|||..+-+..+++
T Consensus         2 niF~Kk-tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~k   80 (208)
T KOG3231|consen    2 NIFKKK-TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSK   80 (208)
T ss_pred             CcccCC-CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            689865 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHH
Q 026014          103 IRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEE  182 (244)
Q Consensus       103 l~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~  182 (244)
                      +.+++.|-..+.++..++++|+..++.|+.||+.|+++++..+|.+|....++|++.+|||+|++|+.+|.+++++|.++
T Consensus        81 i~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~a  160 (208)
T KOG3231|consen   81 ITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQA  160 (208)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchhhhhcccCCCCcccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014          183 LTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR  243 (244)
Q Consensus       183 lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~  243 (244)
                      +|++|||||||++++++.++|+... .+...+            .....+|+.+.|++||+
T Consensus       161 iVNqVLDEIGIEisgKma~~P~a~s-~~~~st------------~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  161 IVNQVLDEIGIEISGKMAKAPSARS-LPSAST------------SKATISDIERQLAALRS  208 (208)
T ss_pred             HHHHHHHHhhhhhcchhccCCccCC-CCcccc------------CCCcHHHHHHHHHHhcC
Confidence            9999999999999999999997432 211110            12457889999999985

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-39  Score=263.57  Aligned_cols=190  Identities=24%  Similarity=0.391  Sum_probs=168.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSIS  120 (244)
Q Consensus        41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~  120 (244)
                      .|+.+.++|.|+.++|+++||.++.++|+|+++||++.|||||.|+||+|++..+|+++++++|+|..++|+|.++.+++
T Consensus        13 ~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt   92 (203)
T KOG3232|consen   13 DLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVT   92 (203)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666677799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcchhhhhcc
Q 026014          121 TGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLS  200 (244)
Q Consensus       121 ~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~~~~~~L~  200 (244)
                      ++|.+++++|....+.||+++|+.+|+.|++||+++++..++|+++|++++..+.|+++||.|+++|+||+|++++..||
T Consensus        93 ~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp  172 (203)
T KOG3232|consen   93 KSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELP  172 (203)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCC
Confidence            99999999999999999999999999999999999999999999999998888899999999999999999999999887


Q ss_pred             cCCCCcccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014          201 SAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR  243 (244)
Q Consensus       201 ~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~  243 (244)
                      .-..++++.+  .+.          . .+++|+|.+||++||.
T Consensus       173 ~~~~~a~~~~--t~~----------~-~~e~d~L~qRLaaLR~  202 (203)
T KOG3232|consen  173 QNVVPAISVK--TSA----------V-VDEEDDLTQRLAALRA  202 (203)
T ss_pred             CCCCCCcCCC--Ccc----------c-cchhhHHHHHHHHHhc
Confidence            5322222221  000          1 2334999999999996

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.92  E-value=1.9e-25  Score=184.79  Aligned_cols=168  Identities=27%  Similarity=0.401  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           37 ESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYAS  116 (244)
Q Consensus        37 ~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~  116 (244)
                      ++...|+.+++.|++++.+|+...+++..++++++++|++..|++|++..++.+++..+++....+|+++..+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcchh-
Q 026014          117 TSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDI-  195 (244)
Q Consensus       117 ~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~~~-  195 (244)
                      ..++.+|+.++++|+.+|+.+++++|..+|++|.++++.+++++++|++.++..  .+++++|++++++++++|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999988654  33457789999999999999888 


Q ss_pred             -hhhcccCCCCc
Q 026014          196 -ASQLSSAPKGR  206 (244)
Q Consensus       196 -~~~L~~aP~~~  206 (244)
                       ...||++|++.
T Consensus       159 ~~~~lp~~P~~~  170 (171)
T PF03357_consen  159 EKQQLPSVPSTE  170 (171)
T ss_dssp             -SS-SS---HH-
T ss_pred             ccccCCcCCCCC
Confidence             88889888764

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.5e-22  Score=167.29  Aligned_cols=181  Identities=22%  Similarity=0.302  Sum_probs=140.3

Q ss_pred             HHH-HcCCC-----CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 026014           21 TMN-IFRKK-----TTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQIT   94 (244)
Q Consensus        21 ~~~-lFg~k-----~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~   94 (244)
                      +|+ ||||.     ++|++.    ...||.+..-|   +++-+..++++..++...+++.-.. .|..|.++++++|.+.
T Consensus         3 ~~~~~FG~~k~~~~~t~~ea----I~kLrEteemL---~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E   74 (221)
T KOG1656|consen    3 MFSRLFGGMKQEAKPTPQEA----IQKLRETEEML---EKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYE   74 (221)
T ss_pred             HHHHHhCcccccCCCChHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            455 89884     455544    44567777777   4455555777777777744444333 4556777776666554


Q ss_pred             -HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhc--
Q 026014           95 -NLQGSRAQIRGVATH---TQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESID--  168 (244)
Q Consensus        95 -~l~~~~aql~sv~~q---l~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~--  168 (244)
                       +|.+.-..+.++..|   |++|+++..|..+|+.++++||.+++.||+++|+.+|+++.+|.+.+..|+++|+.+++  
T Consensus        75 ~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~  154 (221)
T KOG1656|consen   75 KQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFG  154 (221)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence             455777777777777   67899999999999999999999999999999999999999999999999999999986  


Q ss_pred             cccchhhhHHHHHHHHHHHHHHhcchhhh---hcccCCCCcccC
Q 026014          169 ETLDKDEAEEETEELTNQVLDEIGVDIAS---QLSSAPKGRIAS  209 (244)
Q Consensus       169 ~~~d~~~~eeE~d~lv~qvldE~~~~~~~---~L~~aP~~~~~~  209 (244)
                      ..+|+++...|+|+|-+..++.-.+++..   .||++|++.+|.
T Consensus       155 a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lPa  198 (221)
T KOG1656|consen  155 ADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALPA  198 (221)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCc
Confidence            45898899999999999999987766553   467777766654

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.89  E-value=2.4e-21  Score=166.65  Aligned_cols=186  Identities=19%  Similarity=0.278  Sum_probs=152.1

Q ss_pred             HHcCCCC-ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----HH
Q 026014           23 NIFRKKT-TPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITN----LQ   97 (244)
Q Consensus        23 ~lFg~k~-~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~----l~   97 (244)
                      .|||+++ .|+..++++...++.....|++.+.+++.+..+.+..+++....+ ..+.|..|..++|.||.+.+    ++
T Consensus         3 rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~-~~~~K~~Al~~LK~KK~~E~ql~~l~   81 (211)
T PTZ00464          3 RLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMT-QSRHKQRAMQLLQQKRMYQNQQDMMM   81 (211)
T ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3888764 678889999999999999999999999988888777776554322 23468889999999997765    55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhc--cccchhh
Q 026014           98 GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESID--ETLDKDE  175 (244)
Q Consensus        98 ~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~--~~~d~~~  175 (244)
                      ....+|+.+.+.|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++.++++..+.|+++|+.+++  +.+|+++
T Consensus        82 ~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdE  161 (211)
T PTZ00464         82 QQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDE  161 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            56677777788899999999999999999999999999999999999999999999999999999999774  4567777


Q ss_pred             hHHHHHHHHHHHHHHhcchhhhhcccCCCCcccC
Q 026014          176 AEEETEELTNQVLDEIGVDIASQLSSAPKGRIAS  209 (244)
Q Consensus       176 ~eeE~d~lv~qvldE~~~~~~~~L~~aP~~~~~~  209 (244)
                      .++|++++..++..+......+..|++|+..+|.
T Consensus       162 Le~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~  195 (211)
T PTZ00464        162 MLGELDALDFDMEKEADASYLADALAVPGTKLPD  195 (211)
T ss_pred             HHHHHHHHHHHHhccccchhhhccccCCCCCCCC
Confidence            7777777777665555444456677888877665

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.82  E-value=3.1e-18  Score=144.77  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=135.8

Q ss_pred             HcCCCC-Ch---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 026014           24 IFRKKT-TP---------KEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQI   93 (244)
Q Consensus        24 lFg~k~-~~---------ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~   93 (244)
                      |||++. .|         +..+.+++..|+.++..|++...+|+..-.++...+|+++++|+..    .|..++|+||.+
T Consensus         4 ~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~----~Al~~LkrKK~~   79 (191)
T PTZ00446          4 WFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMS----NAKILLKRKKLY   79 (191)
T ss_pred             ccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHH
Confidence            799853 33         1247888888999999999999999888888888889999988854    467889999977


Q ss_pred             HHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhcc
Q 026014           94 TNL-QGSRAQIRGVA---THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDE  169 (244)
Q Consensus        94 ~~l-~~~~aql~sv~---~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~  169 (244)
                      .+. .++.+++..++   ..|+++..+..+..+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++++.++.+
T Consensus        80 E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~  159 (191)
T PTZ00446         80 EQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLN  159 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            663 36666666665   45788999999999999999999999999999999999999999999999999999987545


Q ss_pred             ccchhhhHHHHHHHHHHHHHHh
Q 026014          170 TLDKDEAEEETEELTNQVLDEI  191 (244)
Q Consensus       170 ~~d~~~~eeE~d~lv~qvldE~  191 (244)
                      ..|+++.++|++++.++-+++-
T Consensus       160 ~~DEdELe~ELe~Le~e~l~~~  181 (191)
T PTZ00446        160 NVDDDEIDKELDLLKEQTMEEK  181 (191)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            5777778888888777666654

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.71  E-value=1e-14  Score=121.48  Aligned_cols=171  Identities=13%  Similarity=0.213  Sum_probs=140.4

Q ss_pred             HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 026014           24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQ-GSRAQ  102 (244)
Q Consensus        24 lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aq  102 (244)
                      +|++++..-+ ...++..|...-+.|-+..+++++........++++++.|..+.|+    -++++++++..|+ ++..|
T Consensus         4 lfsK~~~Itd-~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAl----llLKkKryQE~Ll~qt~~q   78 (209)
T KOG2910|consen    4 LFSKKSRITD-QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRAL----LLLKKKRYQEELLTQTDNQ   78 (209)
T ss_pred             cccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            8987533222 2345666777777888888888888888899999999999977665    5699999999977 67777


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHH
Q 026014          103 IRGVA---THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEE  179 (244)
Q Consensus       103 l~sv~---~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE  179 (244)
                      |..++   +.|+.+....+|..+++.++.+++++|+.|+++.|+.+|++-.+.++..+.|++++++.|.. .|+++..+|
T Consensus        79 L~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~E  157 (209)
T KOG2910|consen   79 LINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAE  157 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHH
Confidence            77665   55677888899999999999999999999999999999999999999999999999999985 465666777


Q ss_pred             HHHHHHHHHHHhcchhhhhcccCCCCc
Q 026014          180 TEELTNQVLDEIGVDIASQLSSAPKGR  206 (244)
Q Consensus       180 ~d~lv~qvldE~~~~~~~~L~~aP~~~  206 (244)
                      +|++......+      .++|.+|+..
T Consensus       158 ldaLese~~~e------~e~PevPs~e  178 (209)
T KOG2910|consen  158 LDALESELEVE------AELPEVPSTE  178 (209)
T ss_pred             HHHHHHHhhhh------hhcCCCCCCC
Confidence            77777766665      6789999885

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.9e-13  Score=112.47  Aligned_cols=165  Identities=18%  Similarity=0.242  Sum_probs=142.1

Q ss_pred             HcCCC--CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----HH
Q 026014           24 IFRKK--TTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITN----LQ   97 (244)
Q Consensus        24 lFg~k--~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~----l~   97 (244)
                      +||.+  +.|-+.+.++.-.+++..-.++..|.+|+.+--+++.+|++.-...-..+.|.-|-.+++.||.+++    |+
T Consensus         4 iFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~   83 (218)
T KOG1655|consen    4 IFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD   83 (218)
T ss_pred             cccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88886  3588899999999999999999999999999999999999986555567888889999999997755    77


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhH
Q 026014           98 GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAE  177 (244)
Q Consensus        98 ~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~e  177 (244)
                      .....|+.+.+..++.+.+..++.+|+.+++.|+...+.+|+++|..+=+++..-|+..++++|+++...+..-   .++
T Consensus        84 ~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide  160 (218)
T KOG1655|consen   84 QQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDE  160 (218)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCH
Confidence            77888999999999999999999999999999999999999999999999999999999999999998876421   234


Q ss_pred             HHHHHHHHHHHHHh
Q 026014          178 EETEELTNQVLDEI  191 (244)
Q Consensus       178 eE~d~lv~qvldE~  191 (244)
                      ++++.+++.+.+|.
T Consensus       161 ~dL~aELdaL~~E~  174 (218)
T KOG1655|consen  161 ADLDAELDALGQEL  174 (218)
T ss_pred             HHHHHHHHHHHhHh
Confidence            55555555554443

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.51  E-value=1.1e-12  Score=111.73  Aligned_cols=188  Identities=23%  Similarity=0.262  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           49 VEREIAALQLEEKKLVAEIKKTAKTG--NEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGA  126 (244)
Q Consensus        49 Lere~~klek~ekkl~~~iKka~kkg--~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~  126 (244)
                      +++++.++-.+.+...+......++-  .....+++++.+++.++++.+|...+       ++|++..++....-+|..+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~-------sRLqs~~~~~~e~~~m~~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASI-------SRLQSLDTMLFEKVVMRQV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            55666666666666555555444422  44556677777776666655555555       5555555555555666677


Q ss_pred             HHHHHHHHhhCC-HHHHHHHHHHHHHHHHHhhhHH---HHhhhhhccccc--hhhhHHHHHHHHHHHHHHhcchhhhhcc
Q 026014          127 TKAMVAMNQQMK-PAKQAKLIKEFQKQSAQMDMTI---EMMSESIDETLD--KDEAEEETEELTNQVLDEIGVDIASQLS  200 (244)
Q Consensus       127 ~~~Mk~~n~~m~-l~~i~~~M~ef~ke~e~~~~~~---e~m~d~~~~~~d--~~~~eeE~d~lv~qvldE~~~~~~~~L~  200 (244)
                      +..|..++..|| ++.|..+|+.|+.++..++...   +.|.+.++...+  ..++.+++|++++.|++|+|+++.....
T Consensus        78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence            777777788888 9999999999999999998888   666666665553  4467889999999999999999995555


Q ss_pred             cCCCCcccCC-CCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014          201 SAPKGRIASR-NAPNAVANAPKTNTSSESADVEDLEKRFASLRR  243 (244)
Q Consensus       201 ~aP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~  243 (244)
                      ++|....... .+...+|.+.....+.+...++.|++||..|++
T Consensus       158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence            5554211110 000000001111111223557899999999984

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=1.5e-09  Score=100.73  Aligned_cols=169  Identities=12%  Similarity=0.141  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           35 LRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALY  114 (244)
Q Consensus        35 ~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~  114 (244)
                      +.-....|..+.-.|.+++..|+++-++...+++.+.+.|....|..|++.--+.-|-..++.....+|++|-.+|.++.
T Consensus       231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~  310 (439)
T KOG2911|consen  231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQ  310 (439)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            34467788999999999999999999999999999999999888888877766666677778888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcc
Q 026014          115 ASTSISTGMRGATKAMVAMNQ-QMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGV  193 (244)
Q Consensus       115 ~~~~~~~am~~~~~~Mk~~n~-~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~  193 (244)
                      ++.-+..|++.++.+|+.++. ...+++|..+|+++..-++....++++|+...-+..|.  ++++++.+++++..+..-
T Consensus       311 ~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~--~de~lEkEL~~L~~D~~k  388 (439)
T KOG2911|consen  311 TNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDF--EDEDLEKELEDLEADEKK  388 (439)
T ss_pred             ccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCcc--chHHHHHHHHHHHhcccc
Confidence            999999999999999999999 56889999999999999999999999999877553332  244555555555544332


Q ss_pred             hhhhhcccCCCC
Q 026014          194 DIASQLSSAPKG  205 (244)
Q Consensus       194 ~~~~~L~~aP~~  205 (244)
                      .-.-.+|..|..
T Consensus       389 ~e~~~lp~~~~s  400 (439)
T KOG2911|consen  389 NEDLVLPLNSVS  400 (439)
T ss_pred             CCccCCCCCCch
Confidence            222234444443

>PRK10698 phage shock protein PspA; Provisional

Probab=98.07  E-value=0.0023  Score=55.80  Aligned_cols=133  Identities=14%  Similarity=0.216  Sum_probs=93.9

Q ss_pred             HcCCCCChHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------H
Q 026014           24 IFRKKTTPKEALRESKRDMATA--------------TRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI-------L   82 (244)
Q Consensus        24 lFg~k~~~ke~~r~~~~~lr~~--------------~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari-------~   82 (244)
                      ++.+-.+|...++...+.++..              .+.++|+...++....+...+...|+.+|+-+-||.       |
T Consensus        18 ~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~   97 (222)
T PRK10698         18 LLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKL   97 (222)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            6666678887777776666644              566788888888888888999999999999998887       6


Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHh
Q 026014           83 ARQLVRLRQQITN----LQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQM  156 (244)
Q Consensus        83 Ak~lvr~rk~~~~----l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~  156 (244)
                      +..+-..+.++..    ...+..++..+...|..+.+-..+..+=..++.+..++|..+.--.....|..|++--++.
T Consensus        98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki  175 (222)
T PRK10698         98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRI  175 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            6666666665544    3345666666777777777777777777777777777777765555555565554443333

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.002  Score=54.89  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=106.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           43 ATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILAR----QLVRLRQQITNLQGSRAQIRGVATHTQALYASTS  118 (244)
Q Consensus        43 r~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~  118 (244)
                      ..++-.|.--..-|++.+.-++.+|-.-...    .|+.|..    -++..=|...+|.+.-+||+++.+.|+.+..+.+
T Consensus        20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE   95 (221)
T KOG1656|consen   20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   95 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3456666666666666666677777666554    2555543    4777778888899999999999999999988877


Q ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHH---hhhhhccccch--hhhHHHHHHHHHHHHHHhcc
Q 026014          119 ISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEM---MSESIDETLDK--DEAEEETEELTNQVLDEIGV  193 (244)
Q Consensus       119 ~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~---m~d~~~~~~d~--~~~eeE~d~lv~qvldE~~~  193 (244)
                      -++.=..+-.+|+..-+.|..-.-.--+|+...-|+......++   |++++..-+..  +.+|+|+..+++.+.+|.. 
T Consensus        96 nA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeel-  174 (221)
T KOG1656|consen   96 NANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEEL-  174 (221)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHH-
Confidence            77777777788888888855444444445566666666555544   77788887763  4678899999988887753 


Q ss_pred             hhhhhccc
Q 026014          194 DIASQLSS  201 (244)
Q Consensus       194 ~~~~~L~~  201 (244)
                        ..++-.
T Consensus       175 --d~~ll~  180 (221)
T KOG1656|consen  175 --DKELLD  180 (221)
T ss_pred             --HHHHhc
Confidence              444443

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.94  E-value=0.0067  Score=52.53  Aligned_cols=150  Identities=14%  Similarity=0.125  Sum_probs=100.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           41 DMATATRGVEREIAALQLEEKKLVAEI---KKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYAST  117 (244)
Q Consensus        41 ~lr~~~r~Lere~~klek~ekkl~~~i---Kka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~  117 (244)
                      .++-++..|+.....+++..+++..++   |+.++++.-.+-.-.-+.+++.=|....|.....++.+....|+....+.
T Consensus        15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i   94 (211)
T PTZ00464         15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT   94 (211)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777888888888888888777653   44455554322222344566666666667777888888888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHh---hhHHHHhhhhhccccc--hhhhHHHHHHHHHHHHHH
Q 026014          118 SISTGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQM---DMTIEMMSESIDETLD--KDEAEEETEELTNQVLDE  190 (244)
Q Consensus       118 ~~~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~---~~~~e~m~d~~~~~~d--~~~~eeE~d~lv~qvldE  190 (244)
                      .....=..+..+|+..++.  +..+.+-|  ++++.-++.+   -..++=|+++|...++  .+.+|+|++++++.+..|
T Consensus        95 e~a~~~~~vv~amk~g~ka--LK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e  172 (211)
T PTZ00464         95 ESVKDTKVQVDAMKQAAKT--LKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFD  172 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            7777777888889888888  44554433  3333333333   2333346667777664  346789999999999988


Q ss_pred             hc
Q 026014          191 IG  192 (244)
Q Consensus       191 ~~  192 (244)
                      ..
T Consensus       173 ~~  174 (211)
T PTZ00464        173 ME  174 (211)
T ss_pred             Hh
Confidence            64

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=97.92  E-value=0.00086  Score=57.60  Aligned_cols=85  Identities=13%  Similarity=0.045  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH-HhhhHHHHhhhhhc-cc-cchhhhHHHHHHHH
Q 026014          108 THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSA-QMDMTIEMMSESID-ET-LDKDEAEEETEELT  184 (244)
Q Consensus       108 ~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e-~~~~~~e~m~d~~~-~~-~d~~~~eeE~d~lv  184 (244)
                      ..+.....|..+.+-|..++..|..+.....+++.-.++...-+... .++.+.+.++...+ .. .+..+.++.+..++
T Consensus        66 ~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~  145 (204)
T COG5491          66 TMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVL  145 (204)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhc
Confidence            55666778888999999999999988888888888877774333333 45788888777764 33 44456777888777


Q ss_pred             HHHHHHhc
Q 026014          185 NQVLDEIG  192 (244)
Q Consensus       185 ~qvldE~~  192 (244)
                      .++--+..
T Consensus       146 pEi~lel~  153 (204)
T COG5491         146 PEIGLELD  153 (204)
T ss_pred             hhhhhhhh
Confidence            66654443

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0051  Score=52.62  Aligned_cols=166  Identities=16%  Similarity=0.242  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHT  110 (244)
Q Consensus        31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql  110 (244)
                      |++-+++..|.+++-+|.=-|++.+.=+.-...+.++++++|..-..+=+.-++-+.   |.+-+-.+.-.+|-.=..+|
T Consensus         8 ~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLA---KEiv~srk~v~Rly~sKAql   84 (227)
T KOG3229|consen    8 PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILA---KEIVQSRKAVKRLYESKAQL   84 (227)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHHhHHHH
Confidence            566788888999998888888888888888888888888888643333222222222   22222223333333333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH------HHH---HHHHhhhHHHHhhhhhccccchhhhHHHHH
Q 026014          111 QALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKE------FQK---QSAQMDMTIEMMSESIDETLDKDEAEEETE  181 (244)
Q Consensus       111 ~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~e------f~k---e~e~~~~~~e~m~d~~~~~~d~~~~eeE~d  181 (244)
                      .+...      .|+..-..+.-+++.-+-..|-+.|+.      +..   ++.+==+...+|+..+++.++.-++.+|.+
T Consensus        85 nSv~M------~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eeme  158 (227)
T KOG3229|consen   85 NSVSM------QLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEME  158 (227)
T ss_pred             hhHHH------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            33322      222222222222222222233333322      222   222333556678888888888777778888


Q ss_pred             HHHHHHHHHhcchhh-hhcccCCCC
Q 026014          182 ELTNQVLDEIGVDIA-SQLSSAPKG  205 (244)
Q Consensus       182 ~lv~qvldE~~~~~~-~~L~~aP~~  205 (244)
                      +.++.-.|.+.-.+. ..++++|..
T Consensus       159 Ee~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  159 EEADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHHHHHhccccccCCcc
Confidence            999998888876665 335555544

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.013  Score=49.82  Aligned_cols=157  Identities=15%  Similarity=0.245  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAE-----IKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRG  105 (244)
Q Consensus        31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~-----iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~s  105 (244)
                      .+-.+..+.|.|.++...|+-+-++|=.+-|+.-..     +|-.++  +.-..|.|.+.+...|-   ++...+-++.+
T Consensus        17 nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAk--dLvRtR~~i~kf~~~ka---qiqaVSl~iQt   91 (224)
T KOG3230|consen   17 NQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAK--DLVRTRRYIKKFQNMKA---QIQAVSLRIQT   91 (224)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            344566677888888888888888887766665322     222222  24456778777775554   56667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-hhhHHHHhhhhhccccchhhhHHHHHHHH
Q 026014          106 VATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQ-MDMTIEMMSESIDETLDKDEAEEETEELT  184 (244)
Q Consensus       106 v~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~-~~~~~e~m~d~~~~~~d~~~~eeE~d~lv  184 (244)
                      +-+.-..+.+|.-++++|...++-|.--    .+.+|..-...-+..|+- -.++++.|+|+|++.-|+++-++=++.++
T Consensus        92 lkss~sma~aMkGaTkam~~MNrqmnlp----q~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVL  167 (224)
T KOG3230|consen   92 LKSSTSMAQAMKGATKAMAGMNRQMNLP----QIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVL  167 (224)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhccChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            8888888999999999998877766432    244554444444444443 36788999999988777777788889999


Q ss_pred             HHHHHHhcchhh
Q 026014          185 NQVLDEIGVDIA  196 (244)
Q Consensus       185 ~qvldE~~~~~~  196 (244)
                      +++-=.++-++.
T Consensus       168 DEiGvdl~~qL~  179 (224)
T KOG3230|consen  168 DEIGVDLASQLS  179 (224)
T ss_pred             HHHcccHHHHhc
Confidence            998877775554

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=97.67  E-value=0.0048  Score=52.57  Aligned_cols=142  Identities=11%  Similarity=0.055  Sum_probs=96.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           42 MATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILAR-----QLVRLRQQITNLQGSRAQIRGVATHTQALYAS  116 (244)
Q Consensus        42 lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak-----~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~  116 (244)
                      ..++|-.|..++..|++.++++..+|.+.-.     .||.+.+     .+++.=+....|.....++++....|+.+..+
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~   99 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778889999999999999999998876543     2333322     24444455555667777777777778888887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHhhh---HHHHhhhhhccccchhhhHHHHHHHHHHHHHH
Q 026014          117 TSISTGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQMDM---TIEMMSESIDETLDKDEAEEETEELTNQVLDE  190 (244)
Q Consensus       117 ~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~~~---~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE  190 (244)
                      ...+..=..+..+|+..++.  +..+.+-|  ++++.-++.+..   .++-|+++|+.....+.+|+|++++++.+..|
T Consensus       100 iE~a~~~~ev~~aLk~g~~a--LK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e  176 (191)
T PTZ00446        100 LENMHLHKIAVNALSYAANT--HKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ  176 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            77777777788888888887  45555433  344444444433   33346677775543456788999988887764

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.63  E-value=0.036  Score=48.08  Aligned_cols=132  Identities=13%  Similarity=0.226  Sum_probs=77.6

Q ss_pred             HcCCCCChHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 026014           24 IFRKKTTPKEALRESKRDMATAT--------------RGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVR-   88 (244)
Q Consensus        24 lFg~k~~~ke~~r~~~~~lr~~~--------------r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr-   88 (244)
                      ++.+-.+|...++...++++..+              +.+++++..++....+...++..|+++|+-+-||-.+..-.. 
T Consensus        18 ~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~   97 (219)
T TIGR02977        18 LLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKA   97 (219)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            55555788877766666666544              456777788888888888889999999998876654332111 


Q ss_pred             ------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 026014           89 ------LRQQI----TNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQ  155 (244)
Q Consensus        89 ------~rk~~----~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~  155 (244)
                            ...++    ..+..+..+|..+..+|+.+.+...+..+=...+.+...+|..+.--.+...+..|++--++
T Consensus        98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977        98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence                  11111    11224444555555556666666555544455566665666555333344445554444333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.019  Score=48.02  Aligned_cols=175  Identities=17%  Similarity=0.163  Sum_probs=98.7

Q ss_pred             HHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHH
Q 026014           17 ILKKTMN-IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEE-KKLVAEIKKT---AKTGNEAATRILARQLVRLRQ   91 (244)
Q Consensus        17 ~m~~~~~-lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~e-kkl~~~iKka---~kkg~~~~ari~Ak~lvr~rk   91 (244)
                      ++.++++ +|..|++.|++.|.++.            +.+=|+.| .+++.-|.+-   +.+=.-+.|-..=.+.++.=+
T Consensus         3 s~~~le~~lf~LkF~sk~L~r~a~k------------ceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~Lr   70 (203)
T KOG3232|consen    3 STDKLENHLFDLKFTSKQLQRQAKK------------CEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLR   70 (203)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777 89999999999887765            22222222 2334444430   110001111111123344446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHhhhHHHHhhhhhc
Q 026014           92 QITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK---PAKQAKLIKEFQKQSAQMDMTIEMMSESID  168 (244)
Q Consensus        92 ~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~---l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~  168 (244)
                      ...++....+++++....-.--.+|..++++|..   +|+.+|=..=   .+++...   |+.---..+..+.+|+++-.
T Consensus        71 lssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~---alktmNLekis~~MDkFE~q---Fedldvqt~~me~~m~~st~  144 (203)
T KOG3232|consen   71 LSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDS---ALKTMNLEKISQLMDKFEKQ---FEDLDVQTEVMEKAMSGSTA  144 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHH---hhhhhhHHHHHHHhccCccc
Confidence            6777888888888877766667777778888774   4444443321   3344444   44444445666788887644


Q ss_pred             cccchhhhHHHHHHHHHHHHHHhcchhhhhc-ccCCCCcccC
Q 026014          169 ETLDKDEAEEETEELTNQVLDEIGVDIASQL-SSAPKGRIAS  209 (244)
Q Consensus       169 ~~~d~~~~eeE~d~lv~qvldE~~~~~~~~L-~~aP~~~~~~  209 (244)
                      -..+.++.+.=....-++---|+..++...+ |.+|.+....
T Consensus       145 l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~t~~~  186 (203)
T KOG3232|consen  145 LSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVKTSAV  186 (203)
T ss_pred             ccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCCCccc
Confidence            3344555555555555565666776777665 6677776544

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.30  E-value=0.093  Score=45.22  Aligned_cols=148  Identities=18%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             HHHHH-HcCCCCChHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026014           19 KKTMN-IFRKKTTPKEALRESKRDMATAT--------------RGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA   83 (244)
Q Consensus        19 ~~~~~-lFg~k~~~ke~~r~~~~~lr~~~--------------r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~A   83 (244)
                      .+.++ ++.+-.+|...++...+.+...+              +.+++++..++....+...++..|+++|+-+.|+.++
T Consensus        11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al   90 (221)
T PF04012_consen   11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL   90 (221)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44444 55545678877766666665554              4566667777777777788888999999999888877


Q ss_pred             HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHH
Q 026014           84 RQLVRLRQQITNLQ-----------GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ---MKPAKQAKLIKEF  149 (244)
Q Consensus        84 k~lvr~rk~~~~l~-----------~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~---m~l~~i~~~M~ef  149 (244)
                      ........+...|.           .++.+|..+..+|.....-..+..+-..++++-..++..   +++......++.+
T Consensus        91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~  170 (221)
T PF04012_consen   91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERM  170 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence            76665555443332           333444444555555555555555555555555555544   3455555555555


Q ss_pred             HHHHHHhhhHHHHhhhh
Q 026014          150 QKQSAQMDMTIEMMSES  166 (244)
Q Consensus       150 ~ke~e~~~~~~e~m~d~  166 (244)
                      +...+.+.-..+.+.+.
T Consensus       171 e~ki~~~ea~a~a~~el  187 (221)
T PF04012_consen  171 EEKIEEMEARAEASAEL  187 (221)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            55555555555555443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.20  E-value=0.0035  Score=51.41  Aligned_cols=147  Identities=17%  Similarity=0.233  Sum_probs=88.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           45 ATRGVEREIAALQLEEKKLVAEIKKT---AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSIST  121 (244)
Q Consensus        45 ~~r~Lere~~klek~ekkl~~~iKka---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~  121 (244)
                      ++..|...+..|++..+++..+|++.   +++--..+-+..|+.+++.++.+.+   ...++.....+|+........+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k---~~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEK---QLEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999998864   3444445667888888888876544   45666777788888888888888


Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHhhhHHHHhhhhhccccchhhh--HHHHHHHHHHHHHHhcchhhh
Q 026014          122 GMRGATKAMVAMNQQMKPAKQAKLIK--EFQKQSAQMDMTIEMMSESIDETLDKDEA--EEETEELTNQVLDEIGVDIAS  197 (244)
Q Consensus       122 am~~~~~~Mk~~n~~m~l~~i~~~M~--ef~ke~e~~~~~~e~m~d~~~~~~d~~~~--eeE~d~lv~qvldE~~~~~~~  197 (244)
                      ....+..+|+..++.  +.++...|+  ++..-++.+....+.++. +++.+.....  .+.-|+.++..++++.-+...
T Consensus        79 ~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~d~~~e~~e~~~e-i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~  155 (171)
T PF03357_consen   79 SNQQVVKALKQSSKA--LKKINKQINLDKVEKLMDDFQEEMEDQDE-ISEALSDSMDQVDDVDDEELEEELEQLEDEIEE  155 (171)
T ss_dssp             HHHHHSSS----SHH--HHHHHHSTTSCCHHHHHHHHHHHHHHHTS-----------------TTSTTCHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhh
Confidence            899999999988887  445555443  444444444333222221 2222222221  455566677777776554443

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.15  Score=42.43  Aligned_cols=158  Identities=20%  Similarity=0.233  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           33 EALRESKRDMATATRGVEREIAALQLEEKKLVAE-----IKKTAKTG---NEAATRILARQLVRLRQQITNLQGSRAQIR  104 (244)
Q Consensus        33 e~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~-----iKka~kkg---~~~~ari~Ak~lvr~rk~~~~l~~~~aql~  104 (244)
                      --+|...|.|-+.-|.++++-++||.+-++.-..     ++-.+|+=   .....|.||        ...++..+..|=-
T Consensus        18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a--------~s~ki~s~~~QnK   89 (208)
T KOG3231|consen   18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFA--------VSSKITSMSTQNK   89 (208)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhh--------hhhhhhhhHHHHH
Confidence            3478888888888899999999998888877322     22222210   011123332        2233334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHH
Q 026014          105 GVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELT  184 (244)
Q Consensus       105 sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv  184 (244)
                      .+.+++..+.+|..++..|+..++.|.----.-+.-.++..=..  .++. -.+|++.++|.|+..-|+++.++-|+.++
T Consensus        90 ~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmK--MemT-eEMiNDTLDdild~sgDeeEs~aiVNqVL  166 (208)
T KOG3231|consen   90 VMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMK--MEMT-EEMINDTLDDILDGSGDEEESQAIVNQVL  166 (208)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHH--hhhH-HHHHHhhHHHHhcCCCcHHHHHHHHHHHH
Confidence            56677777777777788888887777533222223333322111  1111 24678999999998888888899999999


Q ss_pred             HHHHHHhcchhhhhcccC
Q 026014          185 NQVLDEIGVDIASQLSSA  202 (244)
Q Consensus       185 ~qvldE~~~~~~~~L~~a  202 (244)
                      +++-=|+..-+. ..|++
T Consensus       167 DEIGIEisgKma-~~P~a  183 (208)
T KOG3231|consen  167 DEIGIEISGKMA-KAPSA  183 (208)
T ss_pred             HHhhhhhcchhc-cCCcc
Confidence            999999987665 45644

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=96.36  E-value=0.54  Score=40.01  Aligned_cols=138  Identities=16%  Similarity=0.172  Sum_probs=91.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHH-------HH-HHHHHHHHHHHHHH
Q 026014           41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQ-QITN-------LQ-GSRAQIRGVATHTQ  111 (244)
Q Consensus        41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk-~~~~-------l~-~~~aql~sv~~ql~  111 (244)
                      .-.++|=.|.+++.+|-+..+++.+.+-         .=|.+|+.+||... ....       |+ .+-.|-+.--..|+
T Consensus        13 d~DrAIL~lK~QRdkl~qyqkR~e~~le---------~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlE   83 (209)
T KOG2910|consen   13 DQDRAILSLKTQRDKLKQYQKRLEKQLE---------AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLE   83 (209)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466788888888888888877776653         34678889998533 2222       22 23333333334467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHhhhHHHH---hhhhhccccchhhhHHHHHHHHHH
Q 026014          112 ALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKE--FQKQSAQMDMTIEM---MSESIDETLDKDEAEEETEELTNQ  186 (244)
Q Consensus       112 ~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~e--f~ke~e~~~~~~e~---m~d~~~~~~d~~~~eeE~d~lv~q  186 (244)
                      .+.+....+.--+.+..+++.-|..  +.+++..|+-  ..+-|+.....-++   |+++++..+.. ++++++.++++.
T Consensus        84 qmvsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~Elda  160 (209)
T KOG2910|consen   84 QMVSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAELDA  160 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHH
Confidence            7788888888888899999999988  7778776654  77777666554444   55566666663 456677777766


Q ss_pred             HHHH
Q 026014          187 VLDE  190 (244)
Q Consensus       187 vldE  190 (244)
                      +..|
T Consensus       161 Lese  164 (209)
T KOG2910|consen  161 LESE  164 (209)
T ss_pred             HHHH
Confidence            6544

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=96.33  E-value=0.65  Score=40.63  Aligned_cols=128  Identities=16%  Similarity=0.237  Sum_probs=74.9

Q ss_pred             CChHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---
Q 026014           29 TTPKEALRESKRDMAT--------------ATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQ---   91 (244)
Q Consensus        29 ~~~ke~~r~~~~~lr~--------------~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk---   91 (244)
                      .+|+..+....++...              ..+.++++...+.....+++.+...|+.+||-+-|+-.+...-..-+   
T Consensus        23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~  102 (225)
T COG1842          23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAK  102 (225)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            5788766555544433              45778889999999999999999999999997766544332222111   


Q ss_pred             ----H----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhH
Q 026014           92 ----Q----ITNLQGSRAQIRGVATHTQALYAST---SISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMT  159 (244)
Q Consensus        92 ----~----~~~l~~~~aql~sv~~ql~~a~~~~---~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~  159 (244)
                          +    .....+++.++..+..+|....+-.   ....+...++..|..+...++.   ...|..|++--++....
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~  178 (225)
T COG1842         103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEER  178 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHH
Confidence                1    1113344445555555554444433   3344455555555555556666   45555555554444433

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=95.67  E-value=0.1  Score=43.41  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           40 RDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI  119 (244)
Q Consensus        40 ~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~  119 (244)
                      ..|+-++..|.-..++.....++...+|-..++.|+.+.||+-+..+|+-.+...-|.-+.--.+-+..++.........
T Consensus         2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~   81 (165)
T PF03398_consen    2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC   81 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            45666777777778888888889999999999999999999999999999998888887777777777776655544333


Q ss_pred             HHHHHHHHHHHHHH-HhhCCHHHHHHHHHH----HHHHHHHh------hhHHHHhhhhhccccchhhhHHHHHHHHHHHH
Q 026014          120 STGMRGATKAMVAM-NQQMKPAKQAKLIKE----FQKQSAQM------DMTIEMMSESIDETLDKDEAEEETEELTNQVL  188 (244)
Q Consensus       120 ~~am~~~~~~Mk~~-n~~m~l~~i~~~M~e----f~ke~e~~------~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvl  188 (244)
                      -..++.+...+=-+ .+.-++|.+..+=.-    |-++|...      +.++.-+-.-+....   -.++.++..+.+|+
T Consensus        82 p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~---p~~~~v~~~L~eIA  158 (165)
T PF03398_consen   82 PPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKP---PSEELVEKYLKEIA  158 (165)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S------CCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCC---cCHHHHHHHHHHHH
Confidence            33333333333233 333466666543322    34444221      111111111122110   12457888888888


Q ss_pred             HHhcch
Q 026014          189 DEIGVD  194 (244)
Q Consensus       189 dE~~~~  194 (244)
                      .++|++
T Consensus       159 ~e~~i~  164 (165)
T PF03398_consen  159 KEYGIP  164 (165)
T ss_dssp             HHCT-S
T ss_pred             HHcCCC
Confidence            888865

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=1.9  Score=36.90  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           42 MATATRGVEREIAALQLEEKKLVAEIKKT---AKTGNEAATRIL-ARQLVRLRQQITNLQGSRAQIRGVATHTQALYAST  117 (244)
Q Consensus        42 lr~~~r~Lere~~klek~ekkl~~~iKka---~kkg~~~~ari~-Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~  117 (244)
                      |.-.+-.++.-...++..-.+|..++.+.   +++=...-++-. =+.++|.=|+...|...+-+|++-++-+..+.-+.
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44455566666666666666666655543   333333333332 22355555666666666666666666665554444


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q 026014          118 SISTGMRGATKAMVAMNQQM  137 (244)
Q Consensus       118 ~~~~am~~~~~~Mk~~n~~m  137 (244)
                      +-.+--.....+|+..|+.|
T Consensus        97 e~LKdtq~Tv~AmK~~~k~m  116 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEM  116 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333334455666666554

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.16  E-value=17  Score=34.77  Aligned_cols=152  Identities=13%  Similarity=0.123  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           39 KRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGN---EAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYA  115 (244)
Q Consensus        39 ~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~---~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~  115 (244)
                      ...+.-.+-.|-+-..+|.++-..+..+|+++-.+-+   .++-|..|...+|.|+...+   -..++.+...+|++..+
T Consensus       228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK---~~er~~~~l~~l~~vl~  304 (439)
T KOG2911|consen  228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEK---DLERKVSSLNNLETVLS  304 (439)
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence            4556777888888888888888888888887755433   34567788888888886554   22344444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhh--hccccchhh--hHHHHHHHHHHHHHHh
Q 026014          116 STSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSES--IDETLDKDE--AEEETEELTNQVLDEI  191 (244)
Q Consensus       116 ~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~--~~~~~d~~~--~eeE~d~lv~qvldE~  191 (244)
                      +..-+..=+-+-.+++.-+..++.-..  .+-..++--+-++.+.+.++..  +++.+....  ..+.-|+.+++-|+++
T Consensus       305 ~Id~s~~nkvvl~AyksGs~alK~il~--~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L  382 (439)
T KOG2911|consen  305 QIDNSQTNKVVLQAYKSGSEALKAILA--QGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDL  382 (439)
T ss_pred             HHHhhcccHHHHHHHHHhHHHHHHHHh--ccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHH
Confidence            555555566677777777766433322  2333444444444444444331  122221111  2366777888888887


Q ss_pred             cchh
Q 026014          192 GVDI  195 (244)
Q Consensus       192 ~~~~  195 (244)
                      ..|.
T Consensus       383 ~~D~  386 (439)
T KOG2911|consen  383 EADE  386 (439)
T ss_pred             Hhcc
Confidence            6444

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=82.48  E-value=27  Score=29.09  Aligned_cols=50  Identities=6%  Similarity=-0.021  Sum_probs=33.2

Q ss_pred             HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTA   71 (244)
Q Consensus        22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~   71 (244)
                      +++|+|+|.....+.+=+..+...+..-++.....+......+.++..+-
T Consensus        43 L~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~   92 (184)
T PRK13455         43 LVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQ   92 (184)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677765557778777777777777777666666666666666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		9e-07
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		1e-06
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		1e-04

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 22  MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
           M +F K  +  PKE + E    +    R V+R+I  +Q EE+K+   +K  AK G +   
Sbjct: 3   MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC 62
Query: 80  RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
            +LA++++R R+ ++ L  S+A +  V    +   A   ++  ++ +T+ M AM   +K 
Sbjct: 63  IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 122
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESI 167
           P  QA + +E  K+  +  +  EM+ ++ 
Sbjct: 123 PEIQATM-RELSKEMMKAGIIEEMLEDTF 150

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 5/174 (2%)
Query: 31  PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR 90
           PKE + E    +    R V+R+I  +Q EE+K+   +K  AK G +    +LA++++R R
Sbjct: 8   PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR 67
Query: 91  QQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK-PAKQAKLIKEF 149
           + ++ L  S+A +  V    +   A   ++  ++ +T+ M AM   +K P  QA + +E 
Sbjct: 68  KAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM-REL 126
Query: 150 QKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
            K+  +  +  EM+ ++                  +++L EI    A  L  AP
Sbjct: 127 SKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI---TAGALGKAP 177

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 31  PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR 90
           PKE + E    +    R V+R+I  +Q EE+K+   +K  AK G +    +LA++ +R R
Sbjct: 8   PKELVNEWSLKIRKEXRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEXIRSR 67
Query: 91  QQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK-PAKQAKLIKEF 149
           + ++ L  S+A    V    +   A   ++  ++ +T+   A    +K P  QA   +E 
Sbjct: 68  KAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKSTEVXKAXQSLVKIPEIQA-TXREL 126
Query: 150 QKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
            K+  +  +  EM+ ++                  +++L EI    A  L  AP
Sbjct: 127 SKEXXKAGIIEEMLEDTFESMDDQEEXEEEAEXEIDRILFEI---TAGALGKAP 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	5e-33
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	3e-31
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  118 bits (296), Expect = 5e-33
 Identities = 53/216 (24%), Positives = 105/216 (48%), Gaps = 2/216 (0%)

Query: 27  KKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQL 86
           ++  PKE + E    +    R V+R+I  +Q EE+K+   +K  AK G +    +LA+++
Sbjct: 4   QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63

Query: 87  VRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI 146
           +R R+ ++ L  S+A +  V    +   A   ++  ++ +T+ M AM   +K  +    +
Sbjct: 64  IRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM 123

Query: 147 KEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGR 206
           +E  K+  +  +  EM+ ++ +   D++E EEE E   +++L EI      +  S     
Sbjct: 124 RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDA 183

Query: 207 IASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
           +     P A+A +       E   +E ++ R A+LR
Sbjct: 184 LPEPEPPGAMAASED--EEEEEEALEAMQSRLATLR 217

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  112 bits (282), Expect = 3e-31
 Identities = 44/175 (25%), Positives = 88/175 (50%)

Query: 27  KKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQL 86
            +  PKE + E    +    R V+R+I  +Q EE+K+   +K  AK G +    +LA+++
Sbjct: 4   AEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63

Query: 87  VRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI 146
           +R R+ ++ L  S+A +  V    +   A   ++  ++ +T+ M AM   +K  +    +
Sbjct: 64  IRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM 123

Query: 147 KEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
           +E  K+  +  +  EM+ ++ +   D++E EEE E   +++L EI      +  S
Sbjct: 124 RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 9/188 (4%)

Query: 3    RKELASEARERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKK 62
             ++L  E        L +     +  T  K        ++    +  E+    L+  ++K
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 63   LVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTG 122
            L  E     +   E     L  Q+  L+ Q+   +              +   +      
Sbjct: 1065 LEGESSDLHEQIAE-----LQAQIAELKAQLAKKEEELQAALARLEDETSQKNN--ALKK 1117

Query: 123  MRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEE 182
            +R     +  + + ++  K A+   + +KQ   +   +E +   +++TLD    ++E   
Sbjct: 1118 IRELESHISDLQEDLESEKAAR--NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 183  LTNQVLDE 190
               +  D+
Sbjct: 1176 SDYKDDDD 1183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 50/305 (16%), Positives = 87/305 (28%), Gaps = 100/305 (32%)

Query: 3   RKELASEARERTM---KILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLE 59
              +  E R+R     ++  K  N+ R +  P   LR+                A L+L 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAK-YNVSRLQ--PYLKLRQ----------------ALLELR 148

Query: 60  EKK--------------LVAEIKKTAKT-------------GNEAATRILARQLVRLRQQ 92
             K              +  ++  + K               N  +   +   L +L  Q
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 93  ITNLQGSRAQIRGVATHTQALYAST-SISTGMRGATKAMVAMNQQMKPA-------KQAK 144
           I     SR+       H+  +     SI   +R      +  ++  +         + AK
Sbjct: 209 IDPNWTSRSD------HSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQNAK 257

Query: 145 LIKEFQKQ--------------SAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
               F                       T  +  +    TL  DE     + L  + LD 
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDC 313

Query: 191 IGVDIASQ-LSSAPK--GRIAS--RNAPN-----AVANAPKTNTSSESA----DVEDLEK 236
              D+  + L++ P+    IA   R+           N  K  T  ES+    +  +  K
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 237 RFASL 241
            F  L
Sbjct: 374 MFDRL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	98.89
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	98.8
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.4
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	97.59
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	97.46
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.42
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	96.83
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	95.97
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	94.8
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	93.39
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	93.36
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	87.43

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-51  Score=352.30  Aligned_cols=211  Identities=26%  Similarity=0.392  Sum_probs=140.5

Q ss_pred             CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           28 KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVA  107 (244)
Q Consensus        28 k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~  107 (244)
                      ++||+|++|+|++.||+++|+|+|++.+|++++++++.+||+++++||+++|||||+++||+|+++.+||.++++|++|+
T Consensus         5 ~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~   84 (218)
T 3frt_A            5 EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVL   84 (218)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHH
Q 026014          108 THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQV  187 (244)
Q Consensus       108 ~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qv  187 (244)
                      ++|+++.++.+++++|++++++|+.+|++||+|+|+.+|++|++||+++|++++||+|+|++.++.+++++|+|++|++|
T Consensus        85 ~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kV  164 (218)
T 3frt_A           85 MGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (218)
T ss_dssp             HHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888888899999999999


Q ss_pred             HHHhcchhhhhcccCCCC---cccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014          188 LDEIGVDIASQLSSAPKG---RIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR  243 (244)
Q Consensus       188 ldE~~~~~~~~L~~aP~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~  243 (244)
                      |+|+|.   ++|+.+|++   .+|.+.  +..+.++....+++++++++|++||++||+
T Consensus       165 ldEi~~---~~l~~~p~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          165 LFEITA---GALGKAPSKVTDALPEPE--PPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             HHTC-------------------------------------------------------
T ss_pred             HHHHhH---hHhhcCCCCCCCCCCCcc--ccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            999994   456666654   333211  110011111123344667899999999995

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=2.3e-44  Score=301.81  Aligned_cols=179  Identities=26%  Similarity=0.395  Sum_probs=141.7

Q ss_pred             HHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQ  102 (244)
Q Consensus        23 ~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq  102 (244)
                      ++|+ +|||+|++|+|++.||+++|+|+|++.+|++++++++.+||+++++||+++||+||+++||+|+++.+|+.++++
T Consensus         1 ~~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~   79 (179)
T 2gd5_A            1 GAMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAH   79 (179)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3565 579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHH
Q 026014          103 IRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEE  182 (244)
Q Consensus       103 l~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~  182 (244)
                      |++|+++|+++.++..++++|+.++++|+.+|+.||+|+|+++|++|+++++++|+++|+|+++|+++++++++++++|+
T Consensus        80 l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~  159 (179)
T 2gd5_A           80 MNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEM  159 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             HHHHHHHHhcchhhhhcccCCCC
Q 026014          183 LTNQVLDEIGVDIASQLSSAPKG  205 (244)
Q Consensus       183 lv~qvldE~~~~~~~~L~~aP~~  205 (244)
                      +|++|++|+|+   ++||.+|++
T Consensus       160 ~v~kVl~E~~~---~~l~~~P~~  179 (179)
T 2gd5_A          160 EIDRILFEITA---GALGKAPSK  179 (179)
T ss_dssp             HHHHTTCCC--------------
T ss_pred             HHHHHHHHhhH---hhcccCCCC
Confidence            99999999995   478887753

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=98.89  E-value=6.9e-11  Score=78.35  Aligned_cols=49  Identities=29%  Similarity=0.546  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhcchhhhhcccCCCCcccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014          180 TEELTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR  243 (244)
Q Consensus       180 ~d~lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~  243 (244)
                      ||++|+||+||+|++++.+|+.+|.+.++.+    .           ...++|+|.+||++||+
T Consensus         2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~----~-----------~~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS----V-----------ASAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCHHHHHHHHHTTCC---------CHHHHHH----H-----------HHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCchHHhhcccccccccCCC----C-----------CcccHHHHHHHHHHHhC
Confidence            6899999999999999999999987654321    0           12468999999999995

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=98.80  E-value=2.2e-08  Score=76.03  Aligned_cols=74  Identities=26%  Similarity=0.360  Sum_probs=61.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhc--cccchhhhHHHHHHHHHHHHHHhcchhh----hhcccCCCCcccC
Q 026014          136 QMKPAKQAKLIKEFQKQSAQMDMTIEMMSESID--ETLDKDEAEEETEELTNQVLDEIGVDIA----SQLSSAPKGRIAS  209 (244)
Q Consensus       136 ~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~--~~~d~~~~eeE~d~lv~qvldE~~~~~~----~~L~~aP~~~~~~  209 (244)
                      .||+++|.++|+++..+++..+.|+++|+.+++  ..+|+++.++|++++.++.+++-.+++.    ..||++|++.+|.
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~   81 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS   81 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence            589999999999999999999999999999874  4577778888888888888877555443    3588899887764

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.40  E-value=1.8e-07  Score=79.89  Aligned_cols=153  Identities=10%  Similarity=0.196  Sum_probs=79.3

Q ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 026014           30 TPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIK---KTAKTGNEAATRILARQLVRLR-QQITNLQGSRAQIRG  105 (244)
Q Consensus        30 ~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iK---ka~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~s  105 (244)
                      +|+.-+++.   +|...|.|.+..+.|+++-.+++.+=|   ..+|+-    ++--=.+..|.- +...+.-+...++-.
T Consensus         3 ~~~~~p~e~---~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKka----akkg~~~~arilAkelVR~Rk~~~rl~~   75 (218)
T 3frt_A            3 MQEKPPKEL---VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA----AKKGQKDVCIVLAKEMIRSRKAVSKLYA   75 (218)
T ss_dssp             -----CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556554   556666777777777777766655544   344432    221111222211 233344466777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHhhh---HHHHhhhhhccccchhhhHHHH
Q 026014          106 VATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQMDM---TIEMMSESIDETLDKDEAEEET  180 (244)
Q Consensus       106 v~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~~~---~~e~m~d~~~~~~d~~~~eeE~  180 (244)
                      +.++|++.....+...++..++.+|+.+.+.  ...+...|  .++..-|..+.-   .-+++++.|++++|+....++.
T Consensus        76 ~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~  153 (218)
T 3frt_A           76 SKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEM  153 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCc
Confidence            8899999888888888888888888888877  55666666  777777777632   2235677888888765545555


Q ss_pred             HHHHHHHHHHh
Q 026014          181 EELTNQVLDEI  191 (244)
Q Consensus       181 d~lv~qvldE~  191 (244)
                      ++.++.+.+.+
T Consensus       154 eee~d~~v~kV  164 (218)
T 3frt_A          154 EEEAEMEIDRI  164 (218)
T ss_dssp             TTSTTTHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            66666666654

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=97.59  E-value=1.7e-05  Score=53.04  Aligned_cols=48  Identities=21%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             hhhcccCCCCcccCCCCCcc-ccCCCCCCCCCC--CccHHHHHHHHHhhhC
Q 026014          196 ASQLSSAPKGRIASRNAPNA-VANAPKTNTSSE--SADVEDLEKRFASLRR  243 (244)
Q Consensus       196 ~~~L~~aP~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ddL~~RL~aLr~  243 (244)
                      +.+|.++|++....+..... ..++++.+...+  ...+||||+||++||+
T Consensus         2 ~~qL~~aP~~~~~~~~~~~~~~~va~a~g~~~~~~~~~ddDLQARLdsLRR   52 (54)
T 2v6x_B            2 SHMLQSTPQNLVSNAPIAETAMGIAEPIGAGSEFHGNPDDDLQARLNTLKK   52 (54)
T ss_dssp             -CCCCCCCHHHHTTCCCGGGGSSSSCC----------CCHHHHHHHHHHHC
T ss_pred             cchhhhccccccccccccccccccccccccCCCCCCCchHHHHHHHHHhcc
Confidence            45688888764433222111 001222211111  3468999999999997

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=97.46  E-value=0.0032  Score=45.14  Aligned_cols=74  Identities=12%  Similarity=0.133  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 026014           34 ALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQ-GSRAQIRGVATHTQA  112 (244)
Q Consensus        34 ~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aql~sv~~ql~~  112 (244)
                      .+.+++..|+.+...|+.....|+..-.......|+++ .+|    +..|..++|+||++++.+ ++.+++++++.++.+
T Consensus         3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A            3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            35566667777888888888888777777777777777 555    346788999999887755 899999999888765

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.42  E-value=7e-05  Score=61.83  Aligned_cols=148  Identities=11%  Similarity=0.187  Sum_probs=84.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR-QQITNLQGSRAQIRGVATHTQALYASTSI  119 (244)
Q Consensus        41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~sv~~ql~~a~~~~~~  119 (244)
                      .||...+.|.+.++.|+++-.+++.+-|+....= ..+++--..+..|.. +...+.-+...+|....++|++.....+.
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999998887776553321 112221111222211 22333345677778888999999988888


Q ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHhhhHHH---HhhhhhccccchhhhHHHHHHHHHHHHHHh
Q 026014          120 STGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQMDMTIE---MMSESIDETLDKDEAEEETEELTNQVLDEI  191 (244)
Q Consensus       120 ~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~~~~~e---~m~d~~~~~~d~~~~eeE~d~lv~qvldE~  191 (244)
                      ..++..++.+|+.+.+.  +..+.+.|  +++..-|+.+..-.+   ++++.|++.+++..++++.+++++.+++.+
T Consensus        90 ~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            88888888888888777  44555555  566666666644444   457888888876655556666666666654

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=96.83  E-value=0.067  Score=44.44  Aligned_cols=166  Identities=8%  Similarity=0.076  Sum_probs=106.5

Q ss_pred             HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQI  103 (244)
Q Consensus        24 lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql  103 (244)
                      +||+++.+    -+.+..|+-++..|.=-.++-....++...+|-+.++.|..+.||+-+.++||-.+...=|.-+.--.
T Consensus         3 mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyC   78 (191)
T 3frr_A            3 MLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYC   78 (191)
T ss_dssp             -CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58877653    35666677777777777777777888889999999999999999999999999999887776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CCHHHHHHHHH----HHHHHHHHh------hhHHHHhhhhhcccc
Q 026014          104 RGVATHTQALYASTSISTGMRGATK-AMVAMNQQ-MKPAKQAKLIK----EFQKQSAQM------DMTIEMMSESIDETL  171 (244)
Q Consensus       104 ~sv~~ql~~a~~~~~~~~am~~~~~-~Mk~~n~~-m~l~~i~~~M~----ef~ke~e~~------~~~~e~m~d~~~~~~  171 (244)
                      +-+..++.....+...-..++.+.. .+=...+. -++|.+..+=+    .|-++|...      +-++..+-.-+....
T Consensus        79 elL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~~~  158 (191)
T 3frr_A           79 DLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEA  158 (191)
T ss_dssp             HHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCCSC
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCCCC
Confidence            6666665554443333333433333 33344443 67888875543    344444432      112222222222111


Q ss_pred             chhhhHHHHHHHHHHHHHHhcchhh
Q 026014          172 DKDEAEEETEELTNQVLDEIGVDIA  196 (244)
Q Consensus       172 d~~~~eeE~d~lv~qvldE~~~~~~  196 (244)
                         -+.+-++..+.+|+.++|++..
T Consensus       159 ---P~~~lv~~yL~EIA~~y~V~w~  180 (191)
T 3frr_A          159 ---PPKILVERYLIEIAKNYNVPYE  180 (191)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTCCCC
T ss_pred             ---cCHHHHHHHHHHHHHHcCCCCC
Confidence               1256788889999999987763

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0045  Score=41.70  Aligned_cols=54  Identities=15%  Similarity=0.108  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHH
Q 026014          137 MKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE  190 (244)
Q Consensus       137 m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE  190 (244)
                      +|+++|..+++++...++..+.|+++++.+.+-...++.++++++++++.+.+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            578999999999999999999999999998764321233466777777766655

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=94.80  E-value=1.3  Score=36.76  Aligned_cols=159  Identities=11%  Similarity=0.080  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014           34 ALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQAL  113 (244)
Q Consensus        34 ~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a  113 (244)
                      ..-+.+..|+-++..|.=-.++-...-+....+|-+.++.|..+.||+-+.++||-.+...=|.-+.--.+-+..++...
T Consensus         8 ~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll   87 (193)
T 3ggy_A            8 FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVI   87 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888888888888888888889999999999999999999999999999998877665555555555555443


Q ss_pred             HH--------HHHHHHHHHHHHHH-HHHHHhhCCHHHHHHHH----HHHHHHHHH------hhhHHHHhhhhhccccchh
Q 026014          114 YA--------STSISTGMRGATKA-MVAMNQQMKPAKQAKLI----KEFQKQSAQ------MDMTIEMMSESIDETLDKD  174 (244)
Q Consensus       114 ~~--------~~~~~~am~~~~~~-Mk~~n~~m~l~~i~~~M----~ef~ke~e~------~~~~~e~m~d~~~~~~d~~  174 (244)
                      ..        ....-..++.+... +=...+..++|.+..+=    ..|-++|..      .|+-..++.- +....   
T Consensus        88 ~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~~~---  163 (193)
T 3ggy_A           88 NDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSPSV---  163 (193)
T ss_dssp             TTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSCCC---
T ss_pred             HhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCCCC---
Confidence            33        22222334433333 33344446888886443    334444433      2322222222 22111   


Q ss_pred             hhHHHHHHHHHHHHHHhcchhh
Q 026014          175 EAEEETEELTNQVLDEIGVDIA  196 (244)
Q Consensus       175 ~~eeE~d~lv~qvldE~~~~~~  196 (244)
                      -+.+-++..+.+|+.++|++..
T Consensus       164 P~~elv~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          164 PKEELVDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCC
Confidence            1256788999999999998765

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=93.39  E-value=0.0062  Score=37.86  Aligned_cols=14  Identities=36%  Similarity=0.679  Sum_probs=11.6

Q ss_pred             cHHHHHHHHHhhhC
Q 026014          230 DVEDLEKRFASLRR  243 (244)
Q Consensus       230 ~~ddL~~RL~aLr~  243 (244)
                      +...|+.||++||+
T Consensus        27 di~~MqsRLaALRS   40 (40)
T 2xze_Q           27 ALEAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            34679999999996

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=93.36  E-value=0.06  Score=30.90  Aligned_cols=16  Identities=25%  Similarity=0.474  Sum_probs=14.1

Q ss_pred             CccHHHHHHHHHhhhC
Q 026014          228 SADVEDLEKRFASLRR  243 (244)
Q Consensus       228 ~~~~ddL~~RL~aLr~  243 (244)
                      ++.+|.|.+||++||.
T Consensus        14 eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           14 DEKEDKLAQRLRALRG   29 (29)
T ss_pred             chhhHHHHHHHHHHcC
Confidence            5778999999999994

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=87.43  E-value=0.36  Score=32.17  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=11.2

Q ss_pred             HHHhhhHHHHhhhhhcc-ccchhhhHHHHHHHHHHHH
Q 026014          153 SAQMDMTIEMMSESIDE-TLDKDEAEEETEELTNQVL  188 (244)
Q Consensus       153 ~e~~~~~~e~m~d~~~~-~~d~~~~eeE~d~lv~qvl  188 (244)
                      ++..+.|+++|+.+++. .+|+++.+.|++++-+..+
T Consensus         1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~   37 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELL   37 (57)
T ss_dssp             ---------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            35567889999987653 3565555556665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	80.46

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=2.8  Score=29.28  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=28.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 026014           65 AEIKKTAKTGNEAATRILARQLVRLRQQITNLQ   97 (244)
Q Consensus        65 ~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~   97 (244)
                      ..|...+..|+.+.|+..+..+-..|+.+-+.|
T Consensus        73 d~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~  105 (106)
T d256ba_          73 DDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY  105 (106)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence            556788999999999999999999999887654