Citrus Sinensis ID: 026067

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASAKSTSPLNTKRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR
ccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHccccccccccccccccEEEEEEcccEEEEcccccccEEEEccccccccccccHHHHHHHccHHHHHHHHHccccccHHHHHHHHcccEEccccccccccccEEEEcccccccccc
ccEEEccccEEccccccccccccccccccccccccccccccccEEcccccccccccccEEEEEEccccEEccHHHcEEEccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccEEEEEEccEEEEEcccccccEEEEcccccccccHccHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcEEEcccccccccccccEEEHccHcHcccc
matlctptcvifsslqsssssssfktlntgttisssttpflGFSVAsakstsplntkrsfkvrccqnlslvpdnqrwmfeqsevngpdiwnntwypkaadhrhsdktwyvVDATDKILGRLASTIAIHIRgknlatytpsvdmGAYVIVVNAEKVAVSGKKRTQKIYrrhsgrpggmkeeTFDQLQHRIPERIIEHAVRgmlpkgrlgRELFTHLkvykgpnhpheaqqpielpirdkriqkqr
MATLCTPTCVIFsslqsssssssfKTLNTGTTISSSTTPFLGFSVASakstsplntkrsfkVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAekvavsgkkrtqkiyrrhsgrpggmkeETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKgpnhpheaqqpielpirdkrIQKQR
MATLCTPTCVIFsslqsssssssFKTLNTGTTISSSTTPFLGFSVASAKSTSPLNTKRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR
***LCTPTCVIF*********************************************RSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVS****************************HRIPERIIEHAVRGMLPKGRLGRELFTHLKVYK*************************
**************************************PFLGFSVA*************************PDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI**K******
MATLCTPTCVIFSS**************TGTTISSSTTPFLGFSVAS**********RSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR
*AT*C**TCVIF***************************F**FSVA*********TKRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASAKSTSPLNTKRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q9SYL9241 50S ribosomal protein L13 yes no 0.848 0.858 0.736 5e-92
P12629250 50S ribosomal protein L13 N/A no 0.963 0.94 0.613 9e-85
Q3MF94151 50S ribosomal protein L13 yes no 0.536 0.867 0.732 1e-52
Q8YPK6151 50S ribosomal protein L13 yes no 0.536 0.867 0.725 6e-52
Q6H001151 50S ribosomal protein L13 N/A no 0.536 0.867 0.694 4e-51
B8HMT1149 50S ribosomal protein L13 yes no 0.586 0.959 0.657 2e-50
Q8DMK8152 50S ribosomal protein L13 yes no 0.524 0.842 0.726 3e-50
B1WQT8151 50S ribosomal protein L13 yes no 0.528 0.854 0.697 6e-50
B0JY35151 50S ribosomal protein L13 yes no 0.536 0.867 0.687 5e-49
B7K221151 50S ribosomal protein L13 yes no 0.516 0.834 0.690 6e-49
>sp|Q9SYL9|RK13_ARATH 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1 Back     alignment and function desciption
 Score =  337 bits (864), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 180/216 (83%), Gaps = 9/216 (4%)

Query: 38  TPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPD 88
           +PFLGFS+ +    S       N+KR  +V+C        SLVP NQRWMF++ E NGPD
Sbjct: 26  SPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPD 85

Query: 89  IWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVI 148
           IWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VI
Sbjct: 86  IWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVI 145

Query: 149 VVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLG 208
           VVNAEKVAVSGKKR QK+YRRHSGRPGGM  ETFDQLQ RIPERI+EHAVRGMLPKGRLG
Sbjct: 146 VVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLG 205

Query: 209 RELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 244
           R LF HLKVYKGP+HPHEAQ+P++LPIRDKRIQ Q+
Sbjct: 206 RALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241

Arabidopsis thaliana (taxid: 3702)
>sp|P12629|RK13_SPIOL 50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1 Back     alignment and function description
>sp|Q3MF94|RL13_ANAVT 50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1 Back     alignment and function description
>sp|Q8YPK6|RL13_NOSS1 50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE=3 SV=1 Back     alignment and function description
>sp|Q6H001|RL13_FREDI 50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3 SV=2 Back     alignment and function description
>sp|B8HMT1|RL13_CYAP4 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1 Back     alignment and function description
>sp|Q8DMK8|RL13_THEEB 50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1 Back     alignment and function description
>sp|B1WQT8|RL13_CYAA5 50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142) GN=rplM PE=3 SV=1 Back     alignment and function description
>sp|B0JY35|RL13_MICAN 50S ribosomal protein L13 OS=Microcystis aeruginosa (strain NIES-843) GN=rplM PE=3 SV=1 Back     alignment and function description
>sp|B7K221|RL13_CYAP8 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801) GN=rplM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
302142820 374 unnamed protein product [Vitis vinifera] 0.848 0.553 0.802 3e-97
225461790235 PREDICTED: 50S ribosomal protein L13, ch 0.848 0.880 0.802 9e-97
118489447241 unknown [Populus trichocarpa x Populus d 0.967 0.979 0.718 1e-94
297839733242 EMB1473 [Arabidopsis lyrata subsp. lyrat 0.950 0.958 0.661 5e-92
15218435241 50S ribosomal protein L13 [Arabidopsis t 0.848 0.858 0.736 3e-90
255582683245 50S ribosomal protein L13, putative [Ric 0.844 0.840 0.729 4e-89
449456559248 PREDICTED: 50S ribosomal protein L13, ch 0.987 0.971 0.677 5e-89
224114752174 predicted protein [Populus trichocarpa] 0.713 1.0 0.862 7e-87
115439933233 Os01g0749200 [Oryza sativa Japonica Grou 0.754 0.789 0.786 4e-85
242054425229 hypothetical protein SORBIDRAFT_03g03462 0.713 0.759 0.844 2e-84
>gi|302142820|emb|CBI20115.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/208 (80%), Positives = 189/208 (90%), Gaps = 1/208 (0%)

Query: 37  TTPFLGFSVASAKSTSPLNTKRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYP 96
           TTPFLGFS+ SA +  P   ++SF+V C    ++VP +QRWMFEQSEV+GPDIWN TWYP
Sbjct: 168 TTPFLGFSI-SAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPDIWNKTWYP 226

Query: 97  KAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVA 156
           KAADH +++KTWY+VDATDKILGRLASTIAI+IRGKNLATYTPSVDMG++VIVVNAEKVA
Sbjct: 227 KAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVA 286

Query: 157 VSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 216
           VSGKKRTQK+YRRHSGRPGGMK ETFDQLQ RIPERI+EHAVRGMLPKGRLGR LF HLK
Sbjct: 287 VSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLK 346

Query: 217 VYKGPNHPHEAQQPIELPIRDKRIQKQR 244
           VYKGP+HPHEAQ+PI+LPIRDKRIQK+R
Sbjct: 347 VYKGPHHPHEAQKPIDLPIRDKRIQKER 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461790|ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|118489447|gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|297839733|ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218435|ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana] gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S ribosomal protein L13, chloroplastic; AltName: Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473; Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S Ribosomal protein L13 [Arabidopsis thaliana] gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal protein L13 [Arabidopsis thaliana] gi|7572938|emb|CAA60775.1| ribosomal protein L13 [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1| putative ribosomal protein L13 [Arabidopsis thaliana] gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255582683|ref|XP_002532120.1| 50S ribosomal protein L13, putative [Ricinus communis] gi|223528200|gb|EEF30260.1| 50S ribosomal protein L13, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449456559|ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis sativus] gi|449518653|ref|XP_004166351.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224114752|ref|XP_002316846.1| predicted protein [Populus trichocarpa] gi|222859911|gb|EEE97458.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115439933|ref|NP_001044246.1| Os01g0749200 [Oryza sativa Japonica Group] gi|14209550|dbj|BAB56046.1| putative ribosomal protein L13 precursor [Oryza sativa Japonica Group] gi|113533777|dbj|BAF06160.1| Os01g0749200 [Oryza sativa Japonica Group] gi|125527707|gb|EAY75821.1| hypothetical protein OsI_03735 [Oryza sativa Indica Group] gi|125572024|gb|EAZ13539.1| hypothetical protein OsJ_03455 [Oryza sativa Japonica Group] gi|215679022|dbj|BAG96452.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704294|dbj|BAG93134.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704454|dbj|BAG93888.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767344|dbj|BAG99572.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242054425|ref|XP_002456358.1| hypothetical protein SORBIDRAFT_03g034620 [Sorghum bicolor] gi|241928333|gb|EES01478.1| hypothetical protein SORBIDRAFT_03g034620 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2203010241 emb1473 "embryo defective 1473 0.864 0.875 0.727 7.2e-84
UNIPROTKB|P0AA10142 rplM [Escherichia coli K-12 (t 0.532 0.915 0.592 8e-37
UNIPROTKB|P66065147 rplM "50S ribosomal protein L1 0.577 0.959 0.5 1.2e-35
TIGR_CMR|CPS_4443142 CPS_4443 "ribosomal protein L1 0.512 0.880 0.56 3.1e-35
UNIPROTKB|Q9KUF1142 rplM "50S ribosomal protein L1 0.532 0.915 0.584 5.1e-35
TIGR_CMR|VC_0570142 VC_0570 "ribosomal protein L13 0.532 0.915 0.584 5.1e-35
TIGR_CMR|SO_3940142 SO_3940 "ribosomal protein L13 0.532 0.915 0.569 1.7e-34
TIGR_CMR|GSU_2876143 GSU_2876 "ribosomal protein L1 0.569 0.972 0.503 1.1e-32
TIGR_CMR|BA_0143145 BA_0143 "ribosomal protein L13 0.516 0.868 0.507 1.4e-32
TIGR_CMR|SPO_1691152 SPO_1691 "ribosomal protein L1 0.569 0.914 0.468 6.9e-31
TAIR|locus:2203010 emb1473 "embryo defective 1473" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 160/220 (72%), Positives = 181/220 (82%)

Query:    34 SSSTTPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEV 84
             S   +PFLGFS+ +    S       N+KR  +V+C        SLVP NQRWMF++ E 
Sbjct:    22 SERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEA 81

Query:    85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMG 144
             NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMG
Sbjct:    82 NGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMG 141

Query:   145 AYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
             A+VIVVNAEKVAVSGKKR QK+YRRHSGRPGGM  ETFDQLQ RIPERI+EHAVRGMLPK
Sbjct:   142 AFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPK 201

Query:   205 GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 244
             GRLGR LF HLKVYKGP+HPHEAQ+P++LPIRDKRIQ Q+
Sbjct:   202 GRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005840 "ribosome" evidence=ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0009579 "thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
UNIPROTKB|P0AA10 rplM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P66065 rplM "50S ribosomal protein L13" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4443 CPS_4443 "ribosomal protein L13" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUF1 rplM "50S ribosomal protein L13" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0570 VC_0570 "ribosomal protein L13" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3940 SO_3940 "ribosomal protein L13" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2876 GSU_2876 "ribosomal protein L13" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0143 BA_0143 "ribosomal protein L13" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1691 SPO_1691 "ribosomal protein L13" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SYL9RK13_ARATHNo assigned EC number0.73610.84830.8589yesno
Q8DMK8RL13_THEEBNo assigned EC number0.72650.52450.8421yesno
Q3MF94RL13_ANAVTNo assigned EC number0.73280.53680.8675yesno
B1XJI1RL13_SYNP2No assigned EC number0.70220.53680.8675yesno
P12629RK13_SPIOLNo assigned EC number0.61380.96310.94N/Ano
Q8YPK6RL13_NOSS1No assigned EC number0.72510.53680.8675yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027910001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (235 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019749001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)
• ••• • 0.989
GSVIVG00035271001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)
• ••• • 0.987
GSVIVG00026943001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)
•  •• • 0.984
GSVIVG00035173001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)
•  •• • 0.983
GSVIVG00026031001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)
•  •• • 0.979
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
•  •• • 0.977
GSVIVG00023012001
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)
•  •• • 0.975
GSVIVG00014698001
SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (209 aa)
•  •  • 0.972
rps2
ribosomal protein S2 (180 aa)
• ••  • 0.972
rpl20
RecName- Full=50S ribosomal protein L20, chloroplastic;; Binds directly to 23S ribosomal RNA an [...] (117 aa)
•  •• • 0.969

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
PRK09216144 PRK09216, rplM, 50S ribosomal protein L13; Reviewe 4e-87
pfam00572128 pfam00572, Ribosomal_L13, Ribosomal protein L13 2e-75
CHL00159143 CHL00159, rpl13, ribosomal protein L13; Validated 4e-75
TIGR01066140 TIGR01066, rplM_bact, ribosomal protein L13, bacte 7e-72
COG0102148 COG0102, RplM, Ribosomal protein L13 [Translation, 4e-70
cd00392114 cd00392, Ribosomal_L13, Ribosomal protein L13 3e-64
PLN00205191 PLN00205, PLN00205, ribisomal protein L13 family p 5e-27
PRK06394146 PRK06394, rpl13p, 50S ribosomal protein L13P; Revi 2e-16
TIGR01077142 TIGR01077, L13_A_E, ribosomal protein L13, archaea 9e-14
PTZ00068202 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Pr 5e-07
>gnl|CDD|181703 PRK09216, rplM, 50S ribosomal protein L13; Reviewed Back     alignment and domain information 
 Score =  254 bits (651), Expect = 4e-87
 Identities = 82/145 (56%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 93  TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
           T+  K A+    ++ WYV+DA  K+LGRLAS +A  +RGK+  T+TP VD G +VIV+NA
Sbjct: 3   TFSAKPAE---VERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINA 59

Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
           EKV ++GKK T KIY RHSG PGG+KE TF +L  + PER+IE AV+GMLPK  LGR +F
Sbjct: 60  EKVKLTGKKLTDKIYYRHSGYPGGLKEITFGELLAKKPERVIEKAVKGMLPKNPLGRAMF 119

Query: 213 THLKVYKGPNHPHEAQQPIELPIRD 237
             LKVY G  HPH AQQP  L I+ 
Sbjct: 120 KKLKVYAGAEHPHAAQQPEVLEIKQ 144

Length = 144
>gnl|CDD|201314 pfam00572, Ribosomal_L13, Ribosomal protein L13 Back     alignment and domain information
>gnl|CDD|177072 CHL00159, rpl13, ribosomal protein L13; Validated Back     alignment and domain information
>gnl|CDD|162186 TIGR01066, rplM_bact, ribosomal protein L13, bacterial type Back     alignment and domain information
>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238230 cd00392, Ribosomal_L13, Ribosomal protein L13 Back     alignment and domain information
>gnl|CDD|177795 PLN00205, PLN00205, ribisomal protein L13 family protein; Provisional Back     alignment and domain information
>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed Back     alignment and domain information
>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic Back     alignment and domain information
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
CHL00159143 rpl13 ribosomal protein L13; Validated 100.0
PRK09216144 rplM 50S ribosomal protein L13; Reviewed 100.0
TIGR01066140 rplM_bact ribosomal protein L13, bacterial type. T 100.0
COG0102148 RplM Ribosomal protein L13 [Translation, ribosomal 100.0
PLN00205191 ribisomal protein L13 family protein; Provisional 100.0
PF00572128 Ribosomal_L13: Ribosomal protein L13; InterPro: IP 100.0
cd00392114 Ribosomal_L13 Ribosomal protein L13. Protein L13, 100.0
KOG3203165 consensus Mitochondrial/chloroplast ribosomal prot 100.0
TIGR01077142 L13_A_E ribosomal protein L13, archaeal/eukaryotic 100.0
PRK06394146 rpl13p 50S ribosomal protein L13P; Reviewed 100.0
PTZ00068202 60S ribosomal protein L13a; Provisional 100.0
KOG3204197 consensus 60S ribosomal protein L13a [Translation, 99.73
>CHL00159 rpl13 ribosomal protein L13; Validated Back     alignment and domain information 
Probab=100.00  E-value=7.2e-63  Score=412.50  Aligned_cols=143  Identities=61%  Similarity=1.054  Sum_probs=139.5

Q ss_pred             cceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeee
Q 026067           90 WNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR  169 (244)
Q Consensus        90 ~~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~  169 (244)
                      ||+||.++..+   .+|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||.+|.|++
T Consensus         1 ~~~t~~~~~~~---~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~   77 (143)
T CHL00159          1 MNKTFIPSKDY---KNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVR   77 (143)
T ss_pred             CCccccCCchh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEe
Confidence            57899999888   599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 026067          170 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI  235 (244)
Q Consensus       170 HtgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i  235 (244)
                      |||||||+|+++++++++++|++||++||+||||||.+||++|+||+||+|.+|||++|+|+.+++
T Consensus        78 htg~pGg~k~~~~~~~~~r~P~~il~~aV~gMLPkn~lgr~~~~rLkvy~G~~hph~aq~p~~~~~  143 (143)
T CHL00159         78 HSGRPGGLKIETFEELQNRLPNRIIEKAVKGMLPKGPLGRKLFTKLKVYKGESHPHVAQKPIKINI  143 (143)
T ss_pred             cCCCCCCcccccHHHHhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCccccCCeecCC
Confidence            999999999999999999999999999999999999999999999999999999999999998864

>PRK09216 rplM 50S ribosomal protein L13; Reviewed Back     alignment and domain information
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type Back     alignment and domain information
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00205 ribisomal protein L13 family protein; Provisional Back     alignment and domain information
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd00392 Ribosomal_L13 Ribosomal protein L13 Back     alignment and domain information
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic Back     alignment and domain information
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed Back     alignment and domain information
>PTZ00068 60S ribosomal protein L13a; Provisional Back     alignment and domain information
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3bbo_L250 Homology Model For The Spinach Chloroplast 50s Subu 9e-85
1p85_H142 Real Space Refined Coordinates Of The 50s Subunit F 5e-39
2j28_J140 Model Of E. Coli Srp Bound To 70s Rncs Length = 140 1e-38
1vsa_H163 Crystal Structure Of A 70s Ribosome-Trna Complex Re 6e-38
2j01_N140 Structure Of The Thermus Thermophilus 70s Ribosome 8e-38
3mrz_J139 Recognition Of The Amber Stop Codon By Release Fact 9e-38
1vsp_H140 Interactions And Dynamics Of The Shine-Dalgarno Hel 9e-38
3fin_N139 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-37
3pyo_J137 Crystal Structure Of A Complex Containing Domain 3 1e-37
3tve_M138 Crystal Structure Analysis Of Ribosomal Decoding. T 1e-37
1nkw_H174 Crystal Structure Of The Large Ribosomal Subunit Fr 6e-33
1pnu_H143 Crystal Structure Of A Streptomycin Dependent Ribos 9e-33
2ftc_H148 Structural Model For The Large Subunit Of The Mamma 8e-16
1ffk_G145 Crystal Structure Of The Large Ribosomal Subunit Fr 1e-06
3g4s_J142 Co-Crystal Structure Of Tiamulin Bound To The Large 1e-06
1j3a_A142 Crystal Structure Of Ribosomal Protein L13 From Pyr 2e-05
3izs_K199 Localization Of The Large Subunit Ribosomal Protein 4e-05
1s1i_M146 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-05
3jyw_M178 Structure Of The 60s Proteins For Eukaryotic Riboso 4e-05
3izr_K206 Localization Of The Large Subunit Ribosomal Protein 7e-05
3j21_I142 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-04
4a17_I198 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-04
2zkr_j203 Structure Of A Mammalian Ribosomal 60s Subunit With 3e-04
>pdb|3BBO|L Chain L, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 250 Back     alignment and structure 
Iteration: 1

 Score =  309 bits (791), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 157/174 (90%)
Query: 71  VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIR 130
           VP +QRWMF   E  GPDIWN TWYPK+ADH  +DK WYVVDATD ILGR+ASTIAIHIR
Sbjct: 77  VPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIR 136
Query: 131 GKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIP 190
           GKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK+YRRHSGRPGG+KEETFDQLQ RIP
Sbjct: 137 GKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIP 196
Query: 191 ERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 244
           ERIIEHAVRGMLPKGRLGR LF HLKVYKG  HPH+AQQPI+LP+RDKRI+ ++
Sbjct: 197 ERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250
>pdb|1P85|H Chain H, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 142 Back     alignment and structure
>pdb|2J28|J Chain J, Model Of E. Coli Srp Bound To 70s Rncs Length = 140 Back     alignment and structure
>pdb|1VSA|H Chain H, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 163 Back     alignment and structure
>pdb|2J01|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 140 Back     alignment and structure
>pdb|3MRZ|J Chain J, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 139 Back     alignment and structure
>pdb|1VSP|H Chain H, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh Length = 140 Back     alignment and structure
>pdb|3FIN|N Chain N, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 139 Back     alignment and structure
>pdb|3PYO|J Chain J, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137 Back     alignment and structure
>pdb|3TVE|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 138 Back     alignment and structure
>pdb|1NKW|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 174 Back     alignment and structure
>pdb|1PNU|H Chain H, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 143 Back     alignment and structure
>pdb|2FTC|H Chain H, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 148 Back     alignment and structure
>pdb|1FFK|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 145 Back     alignment and structure
>pdb|3G4S|J Chain J, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 142 Back     alignment and structure
>pdb|1J3A|A Chain A, Crystal Structure Of Ribosomal Protein L13 From Pyrococcus Horikoshii Length = 142 Back     alignment and structure
>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 199 Back     alignment and structure
>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 146 Back     alignment and structure
>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 178 Back     alignment and structure
>pdb|3IZR|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 206 Back     alignment and structure
>pdb|3J21|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 142 Back     alignment and structure
>pdb|4A17|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 198 Back     alignment and structure
>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 203 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3bbo_L250 Ribosomal protein L13; large ribosomal subunit, sp 3e-98
3r8s_J142 50S ribosomal protein L13; protein biosynthesis, R 3e-86
3v2d_N140 50S ribosomal protein L13; ribosome associated inh 6e-85
3f1f_N163 50S ribosomal protein L13; RF2, ribosome, terminat 1e-84
2zjr_G174 50S ribosomal protein L13; ribosome, large ribosom 8e-83
2ftc_H148 L13MT, MRP-L13, 39S ribosomal protein L13, mitocho 1e-81
1j3a_A142 50S ribosomal protein L13P; rRNA binding, ribosoma 3e-59
1vq8_J145 50S ribosomal protein L13P; ribosome 50S, protein- 8e-59
3jyw_M178 60S ribosomal protein L16(A); eukaryotic ribosome, 1e-48
4a17_I198 RPL13A, 60S ribosomal protein L13A; eukaryotic rib 1e-47
3izc_K199 60S ribosomal protein RPL16 (L13P); eukaryotic rib 1e-47
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 3e-47
2zkr_j203 60S ribosomal protein L13A; protein-RNA complex, 6 2e-44
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 250 Back     alignment and structure
 Score =  286 bits (733), Expect = 3e-98
 Identities = 153/250 (61%), Positives = 183/250 (73%), Gaps = 6/250 (2%)

Query: 1   MATLCTPTCVIFSSLQSSSSSSSFKTLNTG------TTISSSTTPFLGFSVASAKSTSPL 54
           MAT+   + + F S Q+  S        T        T++++       S +++   +  
Sbjct: 1   MATMACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEE 60

Query: 55  NTKRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDAT 114
             +    V+    +  VP +QRWMF   E  GPDIWN TWYPK+ADH  +DK WYVVDAT
Sbjct: 61  WRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDAT 120

Query: 115 DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRP 174
           D ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK+YRRHSGRP
Sbjct: 121 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRP 180

Query: 175 GGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELP 234
           GG+KEETFDQLQ RIPERIIEHAVRGMLPKGRLGR LF HLKVYKG  HPH+AQQPI+LP
Sbjct: 181 GGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLP 240

Query: 235 IRDKRIQKQR 244
           +RDKRI+ ++
Sbjct: 241 LRDKRIRVEK 250
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Length = 142 Back     alignment and structure
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Length = 140 Back     alignment and structure
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163 Back     alignment and structure
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Length = 174 Back     alignment and structure
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 148 Back     alignment and structure
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Length = 142 Back     alignment and structure
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Length = 145 Back     alignment and structure
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178 Back     alignment and structure
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Length = 198 Back     alignment and structure
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 203 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3bbo_L250 Ribosomal protein L13; large ribosomal subunit, sp 100.0
3r8s_J142 50S ribosomal protein L13; protein biosynthesis, R 100.0
3v2d_N140 50S ribosomal protein L13; ribosome associated inh 100.0
2ftc_H148 L13MT, MRP-L13, 39S ribosomal protein L13, mitocho 100.0
2zjr_G174 50S ribosomal protein L13; ribosome, large ribosom 100.0
3f1f_N163 50S ribosomal protein L13; RF2, ribosome, terminat 100.0
1j3a_A142 50S ribosomal protein L13P; rRNA binding, ribosoma 100.0
4b6a_O199 60S ribosomal protein L16-A; large ribosomal subun 100.0
1vq8_J145 50S ribosomal protein L13P; ribosome 50S, protein- 100.0
4a17_I198 RPL13A, 60S ribosomal protein L13A; eukaryotic rib 100.0
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 100.0
2zkr_j203 60S ribosomal protein L13A; protein-RNA complex, 6 100.0
3jyw_M178 60S ribosomal protein L16(A); eukaryotic ribosome, 100.0
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
Probab=100.00  E-value=6.5e-87  Score=595.37  Aligned_cols=235  Identities=67%  Similarity=1.087  Sum_probs=124.7

Q ss_pred             CccccCCceeeecCCCCCCCCCCccccccccccccCCCCccccccccc--CCCCCccccCceEEEeccc-----------
Q 026067            1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASA--KSTSPLNTKRSFKVRCCQN-----------   67 (244)
Q Consensus         1 ma~~~~~~~~~~~s~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~c~~~-----------   67 (244)
                      ||+++|+|||||||+|  ++.++|++++       ..+||+|+.++..  .++.+++++.+++|+|+++           
T Consensus         1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~   71 (250)
T 3bbo_L            1 MATMACASSLTFPSAQ--TQKSFFGTNV-------KQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKE   71 (250)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcceeeccceeccCCC--CCCccccccc-------ccCceeecccccccccccccccCCCcceEEeeeccchhhhhhccc
Confidence            8999999999999986  4567777776       6689999987553  4446678899999999998           


Q ss_pred             --cccccCcchhhhhhhcccCCcccceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCC
Q 026067           68 --LSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA  145 (244)
Q Consensus        68 --~~~v~~~~r~~~~~~e~~g~~~~~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD  145 (244)
                        +++|||||||||+++|+.|+|+||+||++|++++++.+|+||||||+|++||||||.||++|+|||||+||||+||||
T Consensus        72 ~~~~~v~~~~~~~~~~~~~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD  151 (250)
T 3bbo_L           72 FAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGA  151 (250)
T ss_dssp             ----------------------------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSC
T ss_pred             cccccccccccccccchhhcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCC
Confidence              378999999999999999999999999999999777899999999999999999999999999999999999999999


Q ss_pred             EEEEEecceeeecCccccceeeeeccCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCc
Q 026067          146 YVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH  225 (244)
Q Consensus       146 ~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph  225 (244)
                      +|||||||+|+|||+||.+|.|++|+|||||+|+++++++++++|++||++|||||||||++||++|+|||||+|.+|||
T Consensus       152 ~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh  231 (250)
T 3bbo_L          152 FVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPH  231 (250)
T ss_dssp             CCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSC
T ss_pred             EEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccccceeeccC
Q 026067          226 EAQQPIELPIRDKRIQKQR  244 (244)
Q Consensus       226 ~aqkp~~l~i~~~ri~~~~  244 (244)
                      ++|+|++++++++||++|+
T Consensus       232 ~aQkp~~l~ia~k~v~~~~  250 (250)
T 3bbo_L          232 QAQQPIDLPLRDKRIRVEK  250 (250)
T ss_dssp             TTSCC--------------
T ss_pred             HHcCCeeechhhheeeccC
Confidence            9999999999999999986
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Back     alignment and structure
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Back     alignment and structure
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Back     alignment and structure
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Back     alignment and structure
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Back     alignment and structure
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Back     alignment and structure
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Back     alignment and structure
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d2zjrg1142 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinoco 6e-54
d2gych1140 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escheric 5e-50
d2j01n1139 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus 1e-49
d1vqoj1142 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon 6e-34
d1j3aa_142 c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyro 8e-31
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  168 bits (427), Expect = 6e-54
 Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 5/145 (3%)

Query: 93  TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
           T+ PK       ++ W VVDA+   LGRLA+ IA  IRGK+   +TP++  G +V+V+NA
Sbjct: 2   TYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINA 56

Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
            +VA++GKK   K+Y R++G  GG+K ET  +   + PER+IEHAV GMLPKGR GR + 
Sbjct: 57  AQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMH 116

Query: 213 THLKVYKGPNHPHEAQQPIELPIRD 237
           T LKVY G  HPH AQ+P  L  + 
Sbjct: 117 TRLKVYAGETHPHSAQKPQVLKTQP 141
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139 Back     information, alignment and structure
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Back     information, alignment and structure
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d2j01n1139 Ribosomal protein L13 {Thermus thermophilus [TaxId 100.0
d2zjrg1142 Ribosomal protein L13 {Deinococcus radiodurans [Ta 100.0
d2gych1140 Ribosomal protein L13 {Escherichia coli [TaxId: 56 100.0
d1j3aa_142 Ribosomal protein L13 {Archaeon Pyrococcus horikos 100.0
d1vqoj1142 Ribosomal protein L13 {Archaeon Haloarcula marismo 100.0
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-61  Score=398.41  Aligned_cols=139  Identities=53%  Similarity=0.941  Sum_probs=134.8

Q ss_pred             ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067           91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH  170 (244)
Q Consensus        91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H  170 (244)
                      ||||+|+  +   .+|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|++||+||.++.|++|
T Consensus         1 mkt~~p~--~---~~r~W~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~h   75 (139)
T d2j01n1           1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY   75 (139)
T ss_dssp             CCCCCCC--C---CCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCCC
T ss_pred             CCccCcc--c---ccceEEEEeCCCCchHHHHHHHHHHHhccchheeeeccCCCceEEEechhHeeeeccccceeeeeee
Confidence            6899997  3   3799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeec
Q 026067          171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELP  234 (244)
Q Consensus       171 tgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~  234 (244)
                      +|||||+++.+++++++++|++||++|||||||||++|+++|+||+||.|++|||++|+|+.|+
T Consensus        76 sgypGg~k~~~~~~~~~k~P~~il~~aV~gMLPkn~lg~~~l~rLkvy~g~~hp~~aq~p~~l~  139 (139)
T d2j01n1          76 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLE  139 (139)
T ss_dssp             CCSSSCCCCCBHHHHHHSSCSHHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTCSCCCCCC-
T ss_pred             ccccCccccccHHHhcccCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCCCEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999875
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure