Citrus Sinensis ID: 026076

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccHHHHHHHHHcccccccEEEEEccccccccEEEEEccccccccccHHHHHHHccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mlyalsapktciscprgppfpqkrqvstrlcvhaslpadnggfkveytpwlivglgnpgikyhgtrhnvGFEMIDHIAQAQRIAMNTIQSKALigigsigevpillakpqaymnfsgesvgplaahyqvpLRHILVIYDEmslmngvlrlqpkgghghhnglKSVMNHLdgcrefprlcigignppgkmDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGfdqnisrfnmgqkykyhav
Flexible Loop (DISEMBL)
mlyalsapktciscprgppFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNgfdqnisrfnmgqkykyhav
Low Complexity Region (SEG)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered region (IsUnstruct)
*************************VSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ*******
Disordered Region (DISOPRED)
*******PKT***************************************WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN**********
Disordered Region (DISEMBL)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered Region (DISPRO)
*******PKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9FKN4	246	Chloroplastic group IIB i	yes	no	1.0	0.991	0.703	1e-98
Q9LF14	240	Chloroplastic group IIB i	no	no	0.913	0.929	0.741	1e-92
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.877	0.826	0.720	3e-88
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.934	0.890	0.668	3e-87
Q6NLS8	219	Peptidyl-tRNA hydrolase,	no	no	0.799	0.890	0.589	3e-63
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.762	0.645	0.564	2e-61
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.774	0.756	0.550	1e-58
Q181A2	186	Peptidyl-tRNA hydrolase O	yes	no	0.754	0.989	0.405	4e-41
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.754	0.978	0.424	5e-38
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.778	0.892	0.401	6e-38

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  359 bits (921), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 200/246 (81%), Gaps = 2/246 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 238
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 239 YKYHAV 244
           YK+H V
Sbjct: 241 YKFHKV 246

Required for the splicing of group IIB introns in chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  338 bits (868), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/224 (74%), Positives = 190/224 (84%), Gaps = 1/224 (0%)

Query: 21  PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
           P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct: 18  PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query: 81  QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 140
           + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL+IYDE
Sbjct: 77  EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query: 141 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 200
           M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct: 137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query: 201 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 244
           P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct: 197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  324 bits (831), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 180/215 (83%), Gaps = 1/215 (0%)

Query: 30  LCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ 89
           + V AS+P D      EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQ
Sbjct: 46  IAVVASVP-DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQ 104

Query: 90  SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLR 149
           SK+L+GIGSIGEVP+LL KPQ+Y+N+SGE++GPLAA+YQVPLRHILV+YDEMSL NGVLR
Sbjct: 105 SKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLR 164

Query: 150 LQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 209
           LQ KGGHG HNGL++VM  LD  RE PRL IGIG+PPGKMD +A+LLQKFS  ER QID 
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDT 224

Query: 210 ALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 244
           ALEQGV+AVRTLVL GF  +I RFN+ QKYK+H+V
Sbjct: 225 ALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  321 bits (822), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/241 (66%), Positives = 189/241 (78%), Gaps = 13/241 (5%)

Query: 4   ALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYH 63
           +L+AP   I  PR  PF           V +S+P D     VEYTPWLI GLGNPG KY+
Sbjct: 29  SLTAPLHRIRRPR--PF----------TVVSSVP-DPAAGPVEYTPWLIAGLGNPGNKYY 75

Query: 64  GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPL 123
           GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPL
Sbjct: 76  GTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPL 135

Query: 124 AAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 183
           AA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG
Sbjct: 136 AAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIG 195

Query: 184 NPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHA 243
           +PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ QKYK+H 
Sbjct: 196 SPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHR 255

Query: 244 V 244
           V
Sbjct: 256 V 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  241 bits (616), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 149/195 (76%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
           AKPQ YMN SGES GPLAA+Y++PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 226
           NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++D AL +GV+A++ ++   F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 227 DQNISRFNMGQKYKY 241
            ++   FN+ QKYK+
Sbjct: 196 GESWRLFNVEQKYKH 210

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 144/186 (77%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           PQ +MN SGESVG + + Y++PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 228
           L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++D   + G+EA+R L+L GF++
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query: 229 NISRFN 234
           + +  N
Sbjct: 274 SATFVN 279

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 144/189 (76%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWL VGLGNPG  Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAK
Sbjct: 55  PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           PQ +MN SGESVG L +++++PL  +LV+YD++ L    LRL PKGGHG HNG++S++NH
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 228
           L   R+FPRL IGIG PPGKMD   ++L+ F+  E+E++D A  +G+EAVR + L GF++
Sbjct: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234

Query: 229 NISRFNMGQ 237
           + +  N  Q
Sbjct: 235 SATYVNTAQ 243

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1

 Score =  167 bits (424), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           +++VGLGNPG KY  TRHNVGF++ID +A+   I++  I+ KALIG G +G   +LL KP
Sbjct: 2   YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
           Q YMN SGE++  +  +Y+V L +I+V+YD++ L  G +R++ KG  G HNG+KS+   L
Sbjct: 62  QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
            G  +FPR+ +G+  P    D+  ++L +F   E + I+ ALE+  +A+ +++    D +
Sbjct: 122 -GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMS 180

Query: 230 ISRFN 234
           ++++N
Sbjct: 181 MNKYN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           WLIVGLGNPG +Y  TRHN+GF  ++ +A+   +     ++K+ I  G I    + L KP
Sbjct: 2   WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61

Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           Q YMN SG++V  L   Y++ P R +LVIYD++ L    LRL+ +G  G HNG++S++  
Sbjct: 62  QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 228
           L G  EFPRL IGIG PPG+MD   Y+L +F+P E   +   L +  +AV  +V  G   
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180

Query: 229 NISRFN 234
            ++R+N
Sbjct: 181 AMNRYN 186

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 122/192 (63%), Gaps = 2/192 (1%)

Query: 37  PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGI 96
           P ++G   V    WL+VGLGNPG KY G RHNVGF ++D +A  +       ++ A +  
Sbjct: 23  PGESGAV-VSGERWLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVE 81

Query: 97  GSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGH 156
             +G+ P++LAKP +YMN SG  V  L+A Y+VP+  I+V++DE+ +    L+L+  GG 
Sbjct: 82  TRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGS 141

Query: 157 GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVE 216
             HNGL+S+   L G  ++ R+ +GIG PPG+MD  +++LQ FS  ER+++D  + +  +
Sbjct: 142 AGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAAD 200

Query: 217 AVRTLVLNGFDQ 228
           AV T+V +G ++
Sbjct: 201 AVETVVTSGLEK 212

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
224079329	244	predicted protein [Populus trichocarpa]	1.0	1.0	0.807	1e-115
255551384	253	peptidyl-tRNA hydrolase, putative [Ricin	1.0	0.964	0.774	1e-109
449455782	249	PREDICTED: chloroplastic group IIB intro	0.922	0.903	0.814	1e-103
225452074	246	PREDICTED: chloroplastic group IIB intro	0.995	0.987	0.777	1e-103
358248120	244	uncharacterized protein LOC100804132 [Gl	1.0	1.0	0.725	1e-100
388501072	247	unknown [Lotus japonicus]	1.0	0.987	0.696	2e-99
297805938	241	predicted protein [Arabidopsis lyrata su	0.987	1.0	0.704	1e-97
42573527	250	chloroplastic group IIB intron splicing	1.0	0.976	0.703	5e-97
15240875	246	chloroplastic group IIB intron splicing	1.0	0.991	0.703	6e-97
26451849	246	putative CRS2 [Arabidopsis thaliana]	1.0	0.991	0.699	2e-96

>gi|224079329|ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/244 (80%), Positives = 218/244 (89%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           MLYA+S P+TCISCPR   F ++  VS RLCV ASLP +  G KVEYTPWLIVGLGNPG 
Sbjct: 1   MLYAVSTPRTCISCPRSSRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGLGNPGT 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KYHGTRHNVGFEMID IAQA+ + MNTIQSKALIGIG IGEVPILLAKPQAYMNFSGESV
Sbjct: 61  KYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNFSGESV 120

Query: 121 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 180
           GPLAAHY++PLRHIL+IYDEM+L NG+LR+QPKGGHGHHNG+KSVM+HLDGCREFPRLCI
Sbjct: 121 GPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREFPRLCI 180

Query: 181 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 240
           GIGNPPG MDMKA+LLQKFSP EREQIDA+LEQGVEA+RTL+L GF   I+RFN+GQKYK
Sbjct: 181 GIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNLGQKYK 240

Query: 241 YHAV 244
           YH V
Sbjct: 241 YHKV 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551384|ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/253 (77%), Positives = 215/253 (84%), Gaps = 9/253 (3%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPAD-NGGFKVEYTPWLIVGLGNPG 59
           MLYA+S P TCISCPR   F  +   STRL +  SLP + NG  K+EYTPWLIVGLGNPG
Sbjct: 1   MLYAVSTPNTCISCPRNSFFRPRHLASTRLSIRVSLPENGNGVAKIEYTPWLIVGLGNPG 60

Query: 60  IKYHGTRHNV--------GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
            KYHGTRHNV        GFEMID IA+A+ +AMNTIQSKALIGIG I EVPILL KPQA
Sbjct: 61  NKYHGTRHNVTNASLDLVGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKPQA 120

Query: 112 YMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 171
           YMNFSGESVGPLAAHYQVPLRHIL+IYDEMSL NGV+RLQPKGGHGHHNG+KSVM HLDG
Sbjct: 121 YMNFSGESVGPLAAHYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHLDG 180

Query: 172 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 231
           CREFPRLCIGIGNPPG MDM+A+LLQKFS  EREQIDAAL QG++AVRTLVL+GF+QNI+
Sbjct: 181 CREFPRLCIGIGNPPGTMDMRAFLLQKFSSTEREQIDAALGQGIDAVRTLVLSGFNQNIT 240

Query: 232 RFNMGQKYKYHAV 244
           RFN+GQKYKYH V
Sbjct: 241 RFNLGQKYKYHKV 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455782|ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus] gi|449519774|ref|XP_004166909.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/227 (81%), Positives = 199/227 (87%), Gaps = 2/227 (0%)

Query: 20  FPQKRQ-VSTRLCVHASLP-ADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHI 77
           FP  +  VSTRL V AS P +D+ G KVEYTPWLIVGLGNPG KYHGTRHNVGFEMID I
Sbjct: 23  FPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSI 82

Query: 78  AQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVI 137
           AQAQ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNF GESVGPLAAHYQ+PLRH+L+ 
Sbjct: 83  AQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLT 142

Query: 138 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 197
           YDEM+L NGVLRLQPK GHGHHNG+KSVM HLDG REFPRLCIGIGNPPG MDMKA+LLQ
Sbjct: 143 YDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQ 202

Query: 198 KFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 244
           KFS +ER+QIDAALEQGVEAVRTL LNGF Q ++RFN+ QKYKYH V
Sbjct: 203 KFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452074|ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic [Vitis vinifera] gi|296087264|emb|CBI33638.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/247 (77%), Positives = 210/247 (85%), Gaps = 4/247 (1%)

Query: 1   MLYALSAPKTCISCPRGPP---FPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           MLYA+S P T ISC R      F ++R    RLCV ASLP D  G KVEYTPWLIVGLGN
Sbjct: 1   MLYAVSGPSTSISCRRSLDYHGFRRRRLAPARLCVSASLP-DANGIKVEYTPWLIVGLGN 59

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFEMID I+Q + I +NTIQSKALIGIGSIGEVPILLAKPQAYMNFSG
Sbjct: 60  PGNKYHGTRHNVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 119

Query: 118 ESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 177
           ESVGPLAA+YQVPLRHILV+YDEM+L NGVLRL P+GGHG+HNGLK+VM HLDGCREFPR
Sbjct: 120 ESVGPLAAYYQVPLRHILVVYDEMNLPNGVLRLAPRGGHGYHNGLKNVMGHLDGCREFPR 179

Query: 178 LCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237
           LCIGIGNPPG MDMKAYLLQKFS  ER+QIDAA EQG+ AVR LVLNGF+ + +RFN+GQ
Sbjct: 180 LCIGIGNPPGTMDMKAYLLQKFSFEERKQIDAAQEQGIGAVRNLVLNGFNHSTTRFNLGQ 239

Query: 238 KYKYHAV 244
           KYKYH V
Sbjct: 240 KYKYHKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248120|ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycine max] gi|255645504|gb|ACU23247.1| unknown [Glycine max]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/244 (72%), Positives = 203/244 (83%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           ML+A+SAP  C+S P    +P      T   V  S+     G KVEYTPWLI+GLGNPG 
Sbjct: 1   MLHAVSAPSFCLSYPGNLHYPPSSVQKTCFSVRCSVSQTKNGAKVEYTPWLIIGLGNPGN 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNFSGESV
Sbjct: 61  KYHGTRHNVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESV 120

Query: 121 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 180
           GPLAA+YQVPLRHIL+++DE SL NGVLRLQPKGGHGHHNGLK+VM HLDGC  FPRL +
Sbjct: 121 GPLAAYYQVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAV 180

Query: 181 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 240
           GIGNPPG MD++AYLLQKFS  ER+QIDA+LEQ V AVRT+VLNGFDQ+++RFN+GQKYK
Sbjct: 181 GIGNPPGTMDLRAYLLQKFSVEERKQIDASLEQAVAAVRTVVLNGFDQHVNRFNLGQKYK 240

Query: 241 YHAV 244
           YH V
Sbjct: 241 YHKV 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501072|gb|AFK38602.1| unknown [Lotus japonicus]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 206/247 (83%), Gaps = 3/247 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQ---KRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           ML+A SAP  C+S PR   +P    K    TR  V  S+P    G +VEYTPWL+VGLGN
Sbjct: 1   MLHAASAPSLCLSYPRNLHYPSNLTKHPAKTRFSVRCSVPGTKNGAQVEYTPWLVVGLGN 60

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIG+GSIG+VP+LLAKPQ YMNFSG
Sbjct: 61  PGSKYHGTRHNVGFEIIDSLSRAEGILMNTIQSKALIGLGSIGDVPVLLAKPQTYMNFSG 120

Query: 118 ESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 177
           E+VGPLAA+Y++PLRHI+++YDE SL NGVLRLQPKGGHGHHNG K+VM HLDG R+FPR
Sbjct: 121 EAVGPLAAYYRIPLRHIILVYDETSLPNGVLRLQPKGGHGHHNGSKNVMGHLDGSRDFPR 180

Query: 178 LCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237
           L IGIGNPPG MD +A+LLQKFS +ER+QID +LEQGV+A+RTLVL+GF Q++SRFN+GQ
Sbjct: 181 LAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRTLVLHGFSQHVSRFNLGQ 240

Query: 238 KYKYHAV 244
           KYKYH V
Sbjct: 241 KYKYHKV 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805938|ref|XP_002870853.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316689|gb|EFH47112.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 200/244 (81%), Gaps = 3/244 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           M  + S P T +  P+    P  ++ S+   + ASLP  +   KVEYTPWLIVGLGNPG 
Sbjct: 1   MFCSSSPPITSLLYPKAQKKPNSKRFSS---LRASLPVSDNKLKVEYTPWLIVGLGNPGF 57

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQAYMNFSGESV
Sbjct: 58  KYYGTRHNIGFEMIDHIARATEISMNTIQSKALVGIGSVGEVPILLVKPQAYMNFSGESV 117

Query: 121 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 180
           GPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL I
Sbjct: 118 GPLAAYYQIPLRHILMIYDDMGLPNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSI 177

Query: 181 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 240
           GIGNPPG MDMKA+LLQKFSP+ER+QIDA LEQGVE V+TLV  GF  +ISRFN+GQKYK
Sbjct: 178 GIGNPPGNMDMKAFLLQKFSPLERKQIDAGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 237

Query: 241 YHAV 244
           +H V
Sbjct: 238 FHTV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573527|ref|NP_974860.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|332006907|gb|AED94290.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 200/246 (81%), Gaps = 2/246 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 5   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 65  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 238
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 185 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 244

Query: 239 YKYHAV 244
           YK+H V
Sbjct: 245 YKFHKV 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240875|ref|NP_198645.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|75309164|sp|Q9FKN4.1|CRS2A_ARATH RecName: Full=Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic; AltName: Full=CRS2-like protein A; AltName: Full=Chloroplastic RNA splicing factor 2-A; Flags: Precursor gi|9758861|dbj|BAB09443.1| unnamed protein product [Arabidopsis thaliana] gi|90962962|gb|ABE02405.1| At5g38290 [Arabidopsis thaliana] gi|332006908|gb|AED94291.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 200/246 (81%), Gaps = 2/246 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 238
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 239 YKYHAV 244
           YK+H V
Sbjct: 241 YKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451849|dbj|BAC43017.1| putative CRS2 [Arabidopsis thaliana]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 200/246 (81%), Gaps = 2/246 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD++ L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDLGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 238
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 239 YKYHAV 244
           YK+H V
Sbjct: 241 YKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	1.0	0.976	0.703	7.3e-91
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.913	0.929	0.741	5.4e-86
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.799	0.890	0.589	3.9e-60
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.762	0.645	0.564	2.8e-57
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.758	0.989	0.417	3.1e-35
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.729	0.931	0.422	4.1e-33
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.75	0.983	0.396	5.2e-33
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.75	0.968	0.385	1.6e-29
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.745	0.943	0.369	5.7e-27
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.754	0.938	0.351	1.9e-26

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 173/246 (70%), Positives = 200/246 (81%)

Query:     1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
             M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct:     5 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query:    59 GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
             G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct:    65 GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query:   119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
             SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct:   125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query:   179 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 238
              IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct:   185 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 244

Query:   239 YKYHAV 244
             YK+H V
Sbjct:   245 YKFHKV 250

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 166/224 (74%), Positives = 190/224 (84%)

Query:    21 PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
             P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct:    18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query:    81 QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 140
             + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL+IYDE
Sbjct:    77 EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query:   141 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 200
             M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct:   137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query:   201 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 244
             P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct:   197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 115/195 (58%), Positives = 149/195 (76%)

Query:    47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
             + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct:    16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query:   107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
             AKPQ YMN SGES GPLAA+Y++PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct:    76 AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query:   167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 226
             NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++D AL +GV+A++ ++   F
Sbjct:   136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query:   227 DQNISRFNMGQKYKY 241
              ++   FN+ QKYK+
Sbjct:   196 GESWRLFNVEQKYKH 210

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 105/186 (56%), Positives = 144/186 (77%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
             PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:   109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
             PQ +MN SGESVG + + Y++PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct:   154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query:   169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 228
             L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++D   + G+EA+R L+L GF++
Sbjct:   214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query:   229 NISRFN 234
             + +  N
Sbjct:   274 SATFVN 279

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 78/187 (41%), Positives = 117/187 (62%)

Query:    50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
             ++I GLGNPG +Y  TRHN GF ++D +A+   I +   + K+L+G G I  V +LL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:   110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             Q YMN SG +V    + Y++PL  ++V+YD++ L  G +RL+ KG  G H G+ S+++ L
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121

Query:   170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
              G  E PRL IGIG P    D+K Y+LQ F+  ERE ++  L+   EA+   +  GF++ 
Sbjct:   122 -GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179

Query:   230 ISRFNMG 236
             ++ FN G
Sbjct:   180 MTDFNRG 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 76/180 (42%), Positives = 108/180 (60%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLA 107
             P L+VGLGNPG  Y  TRHN+GF + D +A          + S A +  G      ++LA
Sbjct:     4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query:   108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
             KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct:    64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query:   168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
              L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct:   124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 73/184 (39%), Positives = 113/184 (61%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LIVGLGNPG +Y  TRHN+GF  ID +A+   I++N  + K L G G +    ++L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              YMN SGES+ PL  +Y++ +   +V+YD++ +  G LRL+ KG  G HNG+KS ++HL 
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL- 121

Query:   171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 230
             G +EF R+ +GI  P   M +  Y+L +F+  E   ++ ++E+  +A    +   F Q +
Sbjct:   122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181

Query:   231 SRFN 234
             + FN
Sbjct:   182 NTFN 185

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 72/187 (38%), Positives = 107/187 (57%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LI+GLGNPG +Y G RHNVGF+ +   A+   I+ +     +  G G I +  I+LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              YMN SG++   L   Y +    I+V+ D++ L  G +RL+  G  G HNG+ S++  + 
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI- 121

Query:   171 GCREFPRLCIGIGNPPGK---MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
             G +EF RL IGIG P  +    ++  ++L  F   ERE +D A+ +  EA+  L+  G D
Sbjct:   122 GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLD 181

Query:   228 QNISRFN 234
                +RFN
Sbjct:   182 TASNRFN 188

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 68/184 (36%), Positives = 105/184 (57%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LIVGLGNPG KY  TRHN GF ++D +A A   ++       + G G+     +LL KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              YMN SG SV      +++PL   +VI+D++ +  G ++++  GGHG HNGL+S++  L 
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQELG 124

Query:   171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 230
             G   F R+ +GIG P    D+  Y+L  FS  E   +   L+  ++ + +L+  G  + +
Sbjct:   125 GAG-FVRVRVGIGRPVHG-DVVNYVLTNFSQDEMADLAHLLDGTLDLLESLLTAGLPKTM 182

Query:   231 SRFN 234
             S +N
Sbjct:   183 SLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 65/185 (35%), Positives = 105/185 (56%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
             L+VGL NPG +Y  TRHN G  +++ +A+   + + N  +   L G   I    + +  P
Sbjct:     7 LLVGLANPGPEYAKTRHNAGAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLIP 66

Query:   110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
               +MN SG+++  LA  YQ+    I+V +DE+ L  GV + +  GGHG HNGLK  ++ L
Sbjct:    67 TTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISKL 126

Query:   170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
                +EF RL +GIG+P  K  +  Y+L K    E+E +DAA+++ V  +  L+ +G  + 
Sbjct:   127 GNNKEFYRLRLGIGHPGHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLTKA 186

Query:   230 ISRFN 234
              +R +
Sbjct:   187 QNRLH 191

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF14	CRS2B_ARATH	No assigned EC number	0.7410	0.9139	0.9291	no	no
Q9FKN4	CRS2A_ARATH	No assigned EC number	0.7032	1.0	0.9918	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.7209	0.8770	0.8262	yes	no
Q9M5P4	CRS2_MAIZE	No assigned EC number	0.6680	0.9344	0.8906	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-122
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	4e-81
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	9e-78
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	8e-74
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	3e-67
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	4e-54

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  346 bits (889), Expect = e-122
 Identities = 149/191 (78%), Positives = 169/191 (88%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLA 107
           TPWLI GLGNPG KY GTRHNVGFEM+D IA+A+ I MNTIQ K+L+GIGSIG+VP+LLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KPQ YMN+SGESVGPLAA+Y+VPLRHILVIYD+MSL NGVLRLQPKGGHG HNGL+SV+ 
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIE 120

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
           HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  EREQID ALEQGV+AVRTLVL GF+
Sbjct: 121 HLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFN 180

Query: 228 QNISRFNMGQK 238
            +  RFN+ QK
Sbjct: 181 GSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  240 bits (615), Expect = 4e-81
 Identities = 87/172 (50%), Positives = 117/172 (68%), Gaps = 1/172 (0%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
           LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K L+G G IG   +LL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
            YMN SGE+V  LA  Y++P   ILVI+D++ L  G +RL+  GG G HNGLKS++ HL 
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL- 119

Query: 171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLV 222
           G  +FPRL IGIG PP KMD+  Y+L KFS  ERE ++ A+E+  +A+  ++
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  232 bits (593), Expect = 9e-78
 Identities = 90/184 (48%), Positives = 122/184 (66%), Gaps = 2/184 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQS-KALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY  TRHNVGF +ID +A+   +++   +  K LI  G I    ++L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
           Q YMN SGE+V  +A  Y++P   ILV++D++ L  G LRL+  GG G HNGLKS++ HL
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL 120

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
            G  +F RL IGIG PP K D+  Y+L KFSP E E +D A+E+  +A+  L+  GFD+ 
Sbjct: 121 -GTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDKA 179

Query: 230 ISRF 233
           ++RF
Sbjct: 180 MNRF 183

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  222 bits (568), Expect = 8e-74
 Identities = 82/187 (43%), Positives = 119/187 (63%), Gaps = 3/187 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA-QRIAMNTIQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN+GF ++D +A+          + K LI  G I    ++L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KPQ YMN SG++V  LA  Y++P   ILVI+D++ L  G +RL+  GG G HNGLKS++ 
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIA 121

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
           HL G ++F RL IGIG  P K  +  Y+L KFS  E+E +D A+++  +A+  L+  GF+
Sbjct: 122 HL-GTQDFWRLRIGIGR-PDKKKVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFE 179

Query: 228 QNISRFN 234
           + +++FN
Sbjct: 180 KAMNKFN 186

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  205 bits (525), Expect = 3e-67
 Identities = 81/189 (42%), Positives = 118/189 (62%), Gaps = 4/189 (2%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK--ALIGIGSIGEVPIL 105
              LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K   L+  G+I    ++
Sbjct: 1   MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLS-FKEEKKFNGLVAKGTIEGEKVI 59

Query: 106 LAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSV 165
           L KP  YMN SG++VG LA+ Y++    ILV++DE+ L  G +RL+  GG G HNGLKS+
Sbjct: 60  LLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSI 119

Query: 166 MNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 225
           + HL G   F RL IGIG P    D+  Y+L KFS  ERE +D A+++  +A+  L+   
Sbjct: 120 IAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGD 178

Query: 226 FDQNISRFN 234
           F++ +++ N
Sbjct: 179 FEKAMNKLN 187

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  172 bits (437), Expect = 4e-54
 Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 3/186 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY GTRHN GF ++D +A    +++ T +        G +    ++L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SGE+V  LA+ Y++    +LV++DE+ L  G +RL+  GG G HNGLKS+++HL
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL 122

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAV-RTLVLNGFDQ 228
            G   F RL IGIG+P G   +  ++L KF+  E   ++ AL++ VEA+  +     F +
Sbjct: 123 -GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEGAFLK 181

Query: 229 NISRFN 234
            ++RFN
Sbjct: 182 AMNRFN 187

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0
PRK11544	156	hycI hydrogenase 3 maturation protease; Provisiona	92.76
COG0680	160	HyaD Ni,Fe-hydrogenase maturation factor [Energy p	89.31
TIGR00130	153	frhD coenzyme F420-reducing hydrogenase delta subu	86.41
cd06070	140	H2MP_like-2 Putative [NiFe] hydrogenase-specific C	82.66
TIGR00142	146	hycI hydrogenase maturation protease HycI. Hydroge	80.88

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=1.7e-74  Score=500.61  Aligned_cols=190  Identities=78%  Similarity=1.266  Sum_probs=182.1

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k  128 (244)
                      +||||||||||++|++|||||||+++|.||+++++++++.++++.++++.+++++++|+||+||||+||++|++++++|+
T Consensus         2 ~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yk   81 (191)
T cd02406           2 PWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYK   81 (191)
T ss_pred             cEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhC
Confidence            58999999999999999999999999999999998876667788899999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHH
Q 026076          129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID  208 (244)
Q Consensus       129 i~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~  208 (244)
                      ++++++||||||||||+|++|+|.+||++||||||||+++|++|++|+|||||||||+...++++|||++|+++|++.|+
T Consensus        82 i~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~  161 (191)
T cd02406          82 VPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQID  161 (191)
T ss_pred             CCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999657899999999999987678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHHhhhCCCC
Q 026076          209 AALEQGVEAVRTLVLNGFDQNISRFNMGQK  238 (244)
Q Consensus       209 ~~i~~a~~al~~~i~~g~~~~mn~~N~~~~  238 (244)
                      ++++.|+++++.|+.++++++||+||+.||
T Consensus       162 ~~~~~a~~~~~~~~~~~~~~~~n~~n~~~~  191 (191)
T cd02406         162 TALEQGVDAVRTLVLKGFNGSAERFNLVQK  191 (191)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence            999999999999999999999999998775

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.2e-74  Score=497.43  Aligned_cols=188  Identities=43%  Similarity=0.719  Sum_probs=181.2

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~-~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~  126 (244)
                      +++|||||||||++|+.|||||||+++|.||+++++++ ...++.+.++++.+++++|+|+||+||||+||++|.++++|
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            46899999999999999999999999999999999998 45678899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~  206 (244)
                      |++.++++||||||||+|+|++|+|.+||++||||||||+++| ||++|+|||||||||..++++++|||++|+++|++.
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 589999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026076          207 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  236 (244)
Q Consensus       207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~  236 (244)
                      |+++++.|+++++.++..+++++||+||+.
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~  189 (190)
T COG0193         160 LDKAIDKAADALELLLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            999999999999999999999999999975

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=4.2e-72  Score=484.57  Aligned_cols=186  Identities=42%  Similarity=0.688  Sum_probs=177.4

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~  127 (244)
                      +||||||||||++|++|||||||+++|.||++++.++.+ .++++.++++.+++.+++|+||+||||+||++|++++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            489999999999999999999999999999999988763 4566888888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  207 (244)
Q Consensus       128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l  207 (244)
                      +++++++||||||||+|+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5899999999999998777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC-HHHHHHhhhC
Q 026076          208 DAALEQGVEAVRTLVLNG-FDQNISRFNM  235 (244)
Q Consensus       208 ~~~i~~a~~al~~~i~~g-~~~~mn~~N~  235 (244)
                      +++++.++++++.|+.++ ++++||+||+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       160 EKALDKAVEALEMSFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            999999999999999999 9999999995

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=3.9e-71  Score=478.81  Aligned_cols=187  Identities=44%  Similarity=0.753  Sum_probs=177.2

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~  126 (244)
                      ++||||||||||++|++|||||||+++|.||++++..+. ..++++.++++.+++.+++|+||+||||+||++|++++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            369999999999999999999999999999999887664 3456788999999989999999999999999999999999


Q ss_pred             cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~  206 (244)
                      |++++++++|||||||+|+|++|+|++||++||||||||+++| ++++|+|||||||||+ ..++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 5789999999999997 5679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026076          207 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  236 (244)
Q Consensus       207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~  236 (244)
                      |++++++|+++++.|+.++++++||+||+.
T Consensus       159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=2.3e-70  Score=471.48  Aligned_cols=183  Identities=48%  Similarity=0.840  Sum_probs=163.3

Q ss_pred             EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccc-cceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCC
Q 026076           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV  129 (244)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~-~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki  129 (244)
                      |||||||||++|++|||||||+++|.||++++.+|.+.+ +++.++.+.+.+.+++|+||+||||+||++|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999999886654 6788888899999999999999999999999999999999


Q ss_pred             CCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHH
Q 026076          130 PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA  209 (244)
Q Consensus       130 ~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~  209 (244)
                      +++++||||||+|+|+|++|+|++||++||||||||+++| +|++|+|||||||||+...++++|||++|+++|++.|++
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~  159 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK  159 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 589999999999999987899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHhhh
Q 026076          210 ALEQGVEAVRTLVLNGFDQNISRFN  234 (244)
Q Consensus       210 ~i~~a~~al~~~i~~g~~~~mn~~N  234 (244)
                      ++++|+++++.|++++++++||+||
T Consensus       160 ~~~~a~~~l~~~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  160 VIPQAAEALEQIIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHhC
Confidence            9999999999999999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=2.9e-69  Score=460.79  Aligned_cols=171  Identities=51%  Similarity=0.893  Sum_probs=164.2

Q ss_pred             EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (244)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~  130 (244)
                      |||||||||++|++|||||||+++|.||++++.+|++.++++.++++.+++.+++|+||+||||+||++|++++++|+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999988776678999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHHH
Q 026076          131 LRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAA  210 (244)
Q Consensus       131 ~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~~  210 (244)
                      ++++||||||||+|+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~  159 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA  159 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 5899999999999998878999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026076          211 LEQGVEAVRTLV  222 (244)
Q Consensus       211 i~~a~~al~~~i  222 (244)
                      +++|+++++.++
T Consensus       160 ~~~~~~~~~~~~  171 (171)
T cd00462         160 IEKAADALEDIL  171 (171)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-62  Score=425.32  Aligned_cols=223  Identities=57%  Similarity=0.926  Sum_probs=199.4

Q ss_pred             CccccCCCcccccCCCCCCCCCCccccceeEEeecc-CCCCCCcccccCCeEEEeecCCCCCCCcCcchHHHHHHHHHHH
Q 026076            1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASL-PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQ   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~   79 (244)
                      |+|++++|...-.-|+..-++     +.||+++|++ |...+.      ||+|+||||||++|.+|||||||.|+|.||+
T Consensus         1 m~~~~~~~~~~~~~p~~~i~~-----~qr~~~~c~l~~~~~~k------~wli~GLGNPg~~y~gTRHnvG~~Ml~~lar   69 (224)
T KOG2255|consen    1 MTCGGGVPMAYKFLPKKLIAR-----KQRFSVHCDLKPRVSIK------PWLIVGLGNPGSKYVGTRHNVGFEMLDMLAR   69 (224)
T ss_pred             CcCCCCCcceeeecccccccc-----ccchheeeecccCCCCC------ceEEEecCCCcccccccchhhHHHHHHHHHH
Confidence            899999988776666654433     5566645544 543332      8999999999999999999999999999999


Q ss_pred             HcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCCCCcEEEEeeccCCCCceEEEccCCCCCCC
Q 026076           80 AQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHH  159 (244)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GH  159 (244)
                      +++++.++.+.++..+.+.+++.++++++|++|||.||++|.+++..|+++.++++||||||++|+|+++++++||++||
T Consensus        70 rlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgH  149 (224)
T KOG2255|consen   70 RLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYKIPLRHIVVIHDELELPLGKLRLRPGGSHRGH  149 (224)
T ss_pred             HhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhcchheeEEEEeccccCcCceEEeccCCCcccc
Confidence            99998887777788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076          160 NGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  237 (244)
Q Consensus       160 NGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~  237 (244)
                      ||+||++++++++..|+||+||||||++++|+.+|||++|++.|++   +.+++..+..+.++.++++.-+++||..|
T Consensus       150 NGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~k---e~Let~l~~~~~lil~~l~~~is~~~lg~  224 (224)
T KOG2255|consen  150 NGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQK---ELLETLLEHVKTLILQGLQQSISRFNLGQ  224 (224)
T ss_pred             ccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhH---HHHHHHHhhhHHHHHHHHHHhcccCcCCC
Confidence            9999999999888899999999999999999999999999999998   45677777888888889999999999864

>PRK11544 hycI hydrogenase 3 maturation protease; Provisional

Probab=92.76  E-value=3.1  Score=34.87  Aligned_cols=135  Identities=18%  Similarity=0.236  Sum_probs=72.8

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k  128 (244)
                      ..||+|+|||-..    ===+|..++++|++..   +.    .            +.++.-.|    .|.-+-.++..+ 
T Consensus         2 ~~lVlGiGN~L~g----DDGvG~~v~~~L~~~~---~~----~------------v~vid~gt----~~~~~~~~i~~~-   53 (156)
T PRK11544          2 TDVVLTVGNSMMG----DDGAGPLLAEKLAAAP---KG----G------------WVVIDGGS----APENDIVAIREL-   53 (156)
T ss_pred             cEEEEEeCccccc----cCcHHHHHHHHHhccC---CC----C------------eEEEECCC----CHHHHHHHHHhc-
Confidence            4699999999633    2349999999997642   10    0            11111111    122221122211 


Q ss_pred             CCCCcEEEEee--ccCCCCceEEEccC-------CCCCCCCchHHHHHhhcCCCCccEEEE-ccCCCCCccccccccccC
Q 026076          129 VPLRHILVIYD--EMSLMNGVLRLQPK-------GGHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQK  198 (244)
Q Consensus       129 i~~~~ilVIhD--Dldl~~G~vrlk~~-------Gs~~GHNGLkSI~~~L~gt~~f~RLrI-GIGrP~~~~~~~~yVLs~  198 (244)
                       .+ +.+||-|  +.+.++|.++.-..       ..+.+.-||..++..+.+  ..+++.| ||= |.   ++ +| =..
T Consensus        54 -~~-d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~-~~---~~-~~-g~~  123 (156)
T PRK11544         54 -RP-ERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQ-PD---IV-GF-YYP  123 (156)
T ss_pred             -CC-CEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEE-ee---ec-cC-CCC
Confidence             23 5556666  45678999887321       124455589999988853  3455544 443 32   22 22 235


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026076          199 FSPIEREQIDAALEQGVEAVRTLVLNG  225 (244)
Q Consensus       199 Fs~~E~~~l~~~i~~a~~al~~~i~~g  225 (244)
                      +|++    +.+.++++++.++.|...+
T Consensus       124 LS~~----v~~av~~~~~~l~~~~~~~  146 (156)
T PRK11544        124 MTQP----VKDAVETVYQRLEGWEGNG  146 (156)
T ss_pred             CCHH----HHHHHHHHHHHHHHhhccC
Confidence            5555    4445566777777776544

>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]

Probab=89.31  E-value=11  Score=31.99  Aligned_cols=140  Identities=20%  Similarity=0.271  Sum_probs=83.3

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeC-CchhhccchhHHHHHHH
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP-QAYMNFSGESVGPLAAH  126 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP-~TyMN~SG~aV~~~~~~  126 (244)
                      ++.+|+|+|||=.    .===+|-.+++.|++.+.-.-                 .+-++.- +--+|+.+.        
T Consensus         2 ~~ilIlG~GN~L~----~DDG~Gv~vae~L~~~~~~~~-----------------~v~vid~Gt~~~~l~~~--------   52 (160)
T COG0680           2 MRILILGVGNILM----GDDGFGVRVAEKLKKRYKPPE-----------------NVEVIDGGTAGPNLLGL--------   52 (160)
T ss_pred             CeEEEEeeCCccc----ccCcccHHHHHHHHHhcCCCC-----------------CeEEEEcCCCcHHHHHH--------
Confidence            4689999999853    334689999999998764211                 0111111 222333332        


Q ss_pred             cCCCCCcEEEEeeccCC--CCceEEEccC------CCC----CCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccc
Q 026076          127 YQVPLRHILVIYDEMSL--MNGVLRLQPK------GGH----GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAY  194 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl--~~G~vrlk~~------Gs~----~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~y  194 (244)
                        +...+-++|-|=++.  ..|.+++-+.      ..+    .+--++..++..+.-..++...-+|+.-++.  ...+ 
T Consensus        53 --l~~~d~vIIVDav~~g~epG~v~~i~~e~i~~~~~~~~~s~H~~~~~~~L~~~~~~~~~~~~~~~~~v~~~--~~~~-  127 (160)
T COG0680          53 --LAGYDPVIIVDAVLFGLEPGEVRIIDPEEIPAYSSASKDSAHELPLSELLALLKELGGLPVLILGVQVPIV--SLPE-  127 (160)
T ss_pred             --hcCCCcEEEEEeeecCCCCceEEEechhhcccccccCCCccccCCHHHHHHHHHHhcCCceEEEEEeecee--cccc-
Confidence              222334888886555  4999987432      233    3455788888888544556788888885542  1111 


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHH
Q 026076          195 LLQKFSPIEREQIDAALEQGVEAVRTL  221 (244)
Q Consensus       195 VLs~Fs~~E~~~l~~~i~~a~~al~~~  221 (244)
                      +...+|++=++.++.+++++.+.++.+
T Consensus       128 ~~~~lS~ev~~a~~~av~~i~~~l~~~  154 (160)
T COG0680         128 FGGGLSPEVEEAVDKAVERILEELREW  154 (160)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHhh
Confidence            335667776666666666666555443

>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit)

Probab=86.41  E-value=18  Score=30.06  Aligned_cols=105  Identities=17%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHH-cCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA-QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~-~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~  127 (244)
                      +.+|+|+|||-..    ===+|..++++|++. +..+  .               .+.++.-.|    .|  ...+....
T Consensus         4 ~ilVlGiGN~l~g----DDGvG~~v~~~L~~~~~~~~--~---------------~v~vid~gt----~~--~~~l~~~~   56 (153)
T TIGR00130         4 EILVVGCGNILFG----DDGFGPAVIEYLKENGVEKP--D---------------NVCLIDAGT----GA--PHFVFTLI   56 (153)
T ss_pred             eEEEEEeCccccc----cCcHhHHHHHHHHHhCCCCC--C---------------CeEEEECCC----cH--HHHHHHHh
Confidence            4689999998532    234999999999863 2211  0               011111000    01  11111111


Q ss_pred             CCCCCcEEEEeec--cCCCCceEEEccC-----C-C-CCCCCchHHHHHhhcCCCCccEEEE-ccC
Q 026076          128 QVPLRHILVIYDE--MSLMNGVLRLQPK-----G-G-HGHHNGLKSVMNHLDGCREFPRLCI-GIG  183 (244)
Q Consensus       128 ki~~~~ilVIhDD--ldl~~G~vrlk~~-----G-s-~~GHNGLkSI~~~L~gt~~f~RLrI-GIG  183 (244)
                      .+.--+.+||-|=  .+.++|.++....     + . +.++-|+..+++.+.. .  .++.| ||-
T Consensus        57 ~~~~~d~vIivDA~~~~~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~-~--~~~~iiGi~  119 (153)
T TIGR00130        57 PQSKWKKIIVVDIADFGAEPGTLRVLNVDELPNGRYMDAHGWSLAYPLHDLEE-R--IDIRVVGCQ  119 (153)
T ss_pred             hhcCCCEEEEEEccCCCcCCCEEEEEchHHcCCCCCCCCccCCHHHHHHHhcC-C--CCEEEEEEE
Confidence            2333456777774  5789999887321     2 2 5666799999988842 2  55555 553

FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.

>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease

Probab=82.66  E-value=25  Score=28.69  Aligned_cols=84  Identities=21%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (244)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~  130 (244)
                      ||+|+|||-..    ===+|+.+++.|++ .++                     -++.-.|    .|   -.++..+  .
T Consensus         1 lVlGiGN~l~~----DDg~G~~v~~~L~~-~~v---------------------~vi~~g~----~~---~~ll~~i--~   45 (140)
T cd06070           1 LIIGVGNRLYG----DDGFGSCLAEALEQ-CGA---------------------PVFDGGL----DG---FGLLSHL--E   45 (140)
T ss_pred             CEEEECchhcc----cCcHHHHHHHHHhh-CCC---------------------EEEECCC----cH---HHHHHHH--c
Confidence            69999998632    23499999999986 111                     1111111    12   2334433  2


Q ss_pred             CCcEEEEeeccC--CCCceEEEccC---------CC-CCCCCchHHHHHhh
Q 026076          131 LRHILVIYDEMS--LMNGVLRLQPK---------GG-HGHHNGLKSVMNHL  169 (244)
Q Consensus       131 ~~~ilVIhDDld--l~~G~vrlk~~---------Gs-~~GHNGLkSI~~~L  169 (244)
                      ..+.+||.|=++  .+.|.+++...         .+ +.++-|+..+++-+
T Consensus        46 ~~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~   96 (140)
T cd06070          46 NYDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLL   96 (140)
T ss_pred             CCCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHH
Confidence            345566666544  58898887542         12 34445999997776

Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.

>TIGR00142 hycI hydrogenase maturation protease HycI

Probab=80.88  E-value=30  Score=28.42  Aligned_cols=134  Identities=15%  Similarity=0.141  Sum_probs=70.8

Q ss_pred             eEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCC
Q 026076           50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV  129 (244)
Q Consensus        50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki  129 (244)
                      .||+|+|||-..    ===+|..++++|++.+.-   .               .+.++.-.|    .|.-.-.++..+  
T Consensus         1 ~lVlGiGN~l~~----DDG~G~~v~~~L~~~~~~---~---------------~v~v~d~gt----~~~~~~~~~~~~--   52 (146)
T TIGR00142         1 LVLLCVGNELMG----DDGAGPYLAEKCAAAPKE---E---------------NWVVINAGT----VPENFTVAIREL--   52 (146)
T ss_pred             CEEEEeCccccc----cCcHHHHHHHHHHhccCC---C---------------CEEEEECCC----ChHHHHHHHHhc--
Confidence            479999999633    234999999999865321   0               011222222    122111222221  


Q ss_pred             CCCcEEEEeecc--CCCCceEEEccC------CCCCCCCchHHHHHhhcCCCCccEEEE-ccCCCCCccccccccccCCC
Q 026076          130 PLRHILVIYDEM--SLMNGVLRLQPK------GGHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQKFS  200 (244)
Q Consensus       130 ~~~~ilVIhDDl--dl~~G~vrlk~~------Gs~~GHNGLkSI~~~L~gt~~f~RLrI-GIGrP~~~~~~~~yVLs~Fs  200 (244)
                      .+ +.++|-|-.  +.++|.++....      ..+.+..|+..+++.+.+ .--.++.| ||- |.   ++ +|- ...|
T Consensus        53 ~~-d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~~-~~~~~~~ligi~-~~---~~-~~g-~~LS  124 (146)
T TIGR00142        53 RP-THILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLKE-DINGEIIFLGIQ-PD---IV-GFY-YPMS  124 (146)
T ss_pred             CC-CEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHHh-cCCCeEEEEEEe-ee---ee-ecC-CCCC
Confidence            22 556666754  568999887331      124445599999888742 22245555 553 32   22 333 4566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 026076          201 PIEREQIDAALEQGVEAVRTLVL  223 (244)
Q Consensus       201 ~~E~~~l~~~i~~a~~al~~~i~  223 (244)
                      ++=+    +.++++++.+..++.
T Consensus       125 ~~v~----~a~~~~~~~i~~~i~  143 (146)
T TIGR00142       125 QPVK----DAVETLYQRLIGWEG  143 (146)
T ss_pred             HHHH----HHHHHHHHHHHHHHh
Confidence            6544    444555555555443

Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		3e-86
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		2e-83
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		2e-81
2lgj_A	191	Solution Structure Of Mspth Length = 191		2e-30
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		1e-29
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		1e-29
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		3e-29
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		2e-21
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		9e-20
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		2e-18
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		2e-18
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		2e-18
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		4e-18
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		2e-17
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		2e-17

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  314 bits (804), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 148/200 (74%), Positives = 172/200 (86%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT QSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 225 GFDQNISRFNMGQKYKYHAV 244
           GF  +  RFN+ QKYK+H V
Sbjct: 193 GFSGSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 167/193 (86%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 225 GFDQNISRFNMGQ 237
           GF  +  RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 165/194 (85%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           +EYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT Q K+L+G GSIGEVP+
Sbjct: 1   MEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPV 60
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 61  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 120
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 121 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 180
Query: 225 GFDQNISRFNMGQK 238
           GF  +  RFN+ QK
Sbjct: 181 GFSGSTERFNLVQK 194

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 2/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  VGPLA  Y VP + I+VI+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++   +EQ  +A   L+  G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLE 182

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 2/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+  MN SG  VGPLA  Y VP + I+VI+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++   +EQ  +A   L+  G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLE 182

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN GF  ++ +A    I + N  +   + G G+I    + L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SG+SV P +  YQ+    IL+ +DE+ +  GV+RL+  GGHG HNGL+ ++ H+
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
                F RL IGIG+P  K  +  ++L K    E+  +D A++  +  V+ LV     Q 
Sbjct: 126 --GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 230 ISRFN 234
           +++ N
Sbjct: 184 MNQIN 188

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 4/167 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA--QRIAMNTIQSKALIGIGSIGEVPILLAK 108
           +I+GLGN G +Y  TRHNVG   I  IAQ   Q  + N   +  L  + SI    ++L  
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKV-SIDYNNVVLVF 83
Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           P  YMN SG +V  +A  Y++    ILV++DE+ + +G +RL+  GGHG HNGL+S+  H
Sbjct: 84  PTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQH 143
Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 215
           L G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+
Sbjct: 144 L-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 61
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181
Query: 228 QNISRF 233
           +  +R 
Sbjct: 182 KATNRL 187

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 65
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 66  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 125
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 126 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 185
Query: 228 QNISRF 233
           +  +R 
Sbjct: 186 KATNRL 191

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 82
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 83  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 142
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 143 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 202
Query: 228 QNISRF 233
           +  +R 
Sbjct: 203 KATNRL 208

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 19/189 (10%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILL 106
           LIVGLGNPG +Y  TRHN GF ++D +A   R A  T++ +           +    + L
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHL 81
Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
            +PQ YMN SG+SV  LA  +++    ILV +DE+ L  G ++L+  GG G HNGLK + 
Sbjct: 82  LEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDIS 141
Query: 167 NHLDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVE 216
            HL   +++ RL IGIG+P            K D+  ++L+     E++ IDAA+E+ + 
Sbjct: 142 AHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL- 199
Query: 217 AVRTLVLNG 225
           AV   V+ G
Sbjct: 200 AVMPAVVKG 208

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SG+SV  LA  +++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 66  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 125
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 212
                F RL +GIG+P     +  Y+L +    E+E +D +++
Sbjct: 126 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 168

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SG+SV  LA  +++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 72  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 131
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 212
                F RL +GIG+P     +  Y+L +    E+E +D +++
Sbjct: 132 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	1e-101
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	4e-89
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	2e-85
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	2e-82
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	6e-77
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	7e-76
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	2e-75

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  291 bits (748), Expect = e-101
 Identities = 144/193 (74%), Positives = 167/193 (86%)

Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72

Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132

Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192

Query: 225 GFDQNISRFNMGQ 237
           GF  +  RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  260 bits (667), Expect = 4e-89
 Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 2/187 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

Query: 228 QNISRFN 234
              +R +
Sbjct: 183 PAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  251 bits (643), Expect = 2e-85
 Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN G   ++ +A AQ +++    +   L+G  S     + L 
Sbjct: 4   VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLL 63

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  YMN SG+SV  LA  +++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++ 
Sbjct: 64  IPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIA 123

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
            L     F RL +GIG+P     +  Y+L +    E+E +D +++  +  +  ++   + 
Sbjct: 124 QLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWT 183

Query: 228 QNISRFN 234
           + + + +
Sbjct: 184 RAMQKLH 190

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  243 bits (624), Expect = 2e-82
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 1/186 (0%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 228
           L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  +
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 229 NISRFN 234
             +R +
Sbjct: 183 ATNRLH 188

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  230 bits (588), Expect = 6e-77
 Identities = 64/186 (34%), Positives = 105/186 (56%), Gaps = 2/186 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             +I+GLGN G +Y  TRHNVG   I  IAQ    + ++  +    +   SI    ++L 
Sbjct: 23  IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLV 82

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  YMN SG +V  +A  Y++    ILV++DE+ + +G +RL+  GGHG HNGL+S+  
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQ 142

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
           HL G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+  +  ++    +
Sbjct: 143 HL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLE 201

Query: 228 QNISRF 233
             + + 
Sbjct: 202 PVMQKL 207

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  227 bits (580), Expect = 7e-76
 Identities = 69/186 (37%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF  ++ +A    I +    +   + G G+I    + L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           P  YMN SG+SV P +  YQ+    IL+ +DE+ +  GV+RL+  GGHG HNGL+ ++ H
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 228
           +     F RL IGIG+P  K  +  ++L K    E+  +D A++  +  V+ LV     Q
Sbjct: 125 IG--PNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQ 182

Query: 229 NISRFN 234
            +++ N
Sbjct: 183 AMNQIN 188

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  227 bits (580), Expect = 2e-75
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 12/196 (6%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF ++D +A+     +    +         +    + L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           PQ YMN SG+SV  LA  +++    ILV +DE+ L  G ++L+  GG G HNGLK +  H
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143

Query: 169 LDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVEAV 218
           L   +++ RL IGIG+P            K D+  ++L+     E++ IDAA+E+ +  +
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202

Query: 219 RTLVLNGFDQNISRFN 234
             +V    ++ + + +
Sbjct: 203 PAVVKGETERAMMQLH 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=1.1e-75  Score=507.44  Aligned_cols=191  Identities=32%  Similarity=0.540  Sum_probs=180.8

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~  126 (244)
                      |++|||||||||++|++|||||||+++|+||++++++|. +.++++.++++.+++.+++|+||+||||+||++|+++++|
T Consensus         1 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~   80 (193)
T 2pth_A            1 TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF   80 (193)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHH
Confidence            358999999999999999999999999999999999987 5568899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~  206 (244)
                      |+|++++|||||||||||+|++|+|.+||++||||||||+++|++|++|+|||||||||..+.++++|||++|+++|++.
T Consensus        81 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 2pth_A           81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999994278999999999999655578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCCCC
Q 026076          207 IDAALEQGVEAVRTLVLNGFDQNISRFNMGQK  238 (244)
Q Consensus       207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~~  238 (244)
                      |++++++|++|++.|+.++++++||+||..+.
T Consensus       161 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~~  192 (193)
T 2pth_A          161 IDEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCccC
Confidence            99999999999999999999999999998643

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=1.2e-75  Score=511.19  Aligned_cols=193  Identities=75%  Similarity=1.218  Sum_probs=178.1

Q ss_pred             cccCCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHH
Q 026076           45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLA  124 (244)
Q Consensus        45 ~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~  124 (244)
                      +++.+||||||||||++|++|||||||+++|+||++++++|++.++++.++++.+++.+|+|+||+||||+||++|++++
T Consensus        13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~   92 (205)
T 1ryb_A           13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA   92 (205)
T ss_dssp             --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence            56678999999999999999999999999999999999998877788999999999999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHH
Q 026076          125 AHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIER  204 (244)
Q Consensus       125 ~~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~  204 (244)
                      +||+|++++|||||||||||+|++|+|.+||++||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus        93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  172 (205)
T 1ryb_A           93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER  172 (205)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred             HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence            99999999999999999999999999999999999999999999933789999999999997656799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076          205 EQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  237 (244)
Q Consensus       205 ~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~  237 (244)
                      +.|++++++|++|++.|+.++++++||+||..|
T Consensus       173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~  205 (205)
T 1ryb_A          173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999764

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=3.2e-75  Score=503.86  Aligned_cols=186  Identities=41%  Similarity=0.734  Sum_probs=168.0

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~  127 (244)
                      ++|||||||||++|++|||||||+++|+||+++++++.+ .++++.++++.+++++++|+||+||||+||++|++++++|
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y   83 (191)
T 2z2i_A            4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY   83 (191)
T ss_dssp             CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred             cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence            589999999999999999999999999999999998865 3578999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  207 (244)
Q Consensus       128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l  207 (244)
                      +|+++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  162 (191)
T 2z2i_A           84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV  162 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5899999999999997556799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhC
Q 026076          208 DAALEQGVEAVRTLVLNGFDQNISRFNM  235 (244)
Q Consensus       208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~  235 (244)
                      ++++++|++|++.++++|++++||+||.
T Consensus       163 ~~~i~~a~~a~~~~~~~~~~~amn~~n~  190 (191)
T 2z2i_A          163 PTICEQAADATELLIEQGMEPAQNRVHA  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            9999999999999999999999999995

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.2e-74  Score=501.31  Aligned_cols=186  Identities=33%  Similarity=0.582  Sum_probs=178.9

Q ss_pred             eEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 026076           50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (244)
Q Consensus        50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k  128 (244)
                      -|||||||||++|++|||||||+++|+||++++++|.+ .++++.++++.+++.+++|+||+||||+||++|++++++|+
T Consensus        11 ~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yk   90 (199)
T 4fyj_A           11 QLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR   90 (199)
T ss_dssp             CEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhC
Confidence            49999999999999999999999999999999998864 46779999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCC-CccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076          129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  207 (244)
Q Consensus       129 i~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~-~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l  207 (244)
                      |+++++||||||||||+|++|+|++||++||||||||+++| ||+ +|+|||||||||+.++++++|||++|+++|++.|
T Consensus        91 i~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  169 (199)
T 4fyj_A           91 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELL  169 (199)
T ss_dssp             CCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred             CCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999 577 8999999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026076          208 DAALEQGVEAVRTLVLNGFDQNISRFNMG  236 (244)
Q Consensus       208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~~  236 (244)
                      ++++++|++|++.|+++|++++||+||..
T Consensus       170 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          170 DTSIDFALGVLPEMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            99999999999999999999999999975

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=4e-74  Score=506.56  Aligned_cols=190  Identities=34%  Similarity=0.555  Sum_probs=175.4

Q ss_pred             cCCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHH
Q 026076           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA  125 (244)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~  125 (244)
                      +|+||||||||||++|++|||||||+++|+||++++++|.+. ++++.++++.+++.+++|+||+||||+||++|+++++
T Consensus        21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (222)
T 3v2i_A           21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH  100 (222)
T ss_dssp             -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence            357899999999999999999999999999999999988764 5789999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCC----------CCcccccccc
Q 026076          126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYL  195 (244)
Q Consensus       126 ~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP----------~~~~~~~~yV  195 (244)
                      +|+|++++|||||||||||+|++|+|.+||++||||||||+++| +|++|+|||||||||          +.+.++++||
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV  179 (222)
T 3v2i_A          101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV  179 (222)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence            99999999999999999999999999999999999999999999 589999999999999          5567899999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076          196 LQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  237 (244)
Q Consensus       196 Ls~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~  237 (244)
                      |++|+++|++.|++++++|+++++.|++++++++||+||...
T Consensus       180 L~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~~  221 (222)
T 3v2i_A          180 LKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRNG  221 (222)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC----
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999764

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=6.2e-74  Score=496.55  Aligned_cols=187  Identities=37%  Similarity=0.626  Sum_probs=179.7

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~  127 (244)
                      .+|||||||||++|++|||||||+++|.||++++++++. .++.+.++++.+++.+++|+||+||||+||++|++++++|
T Consensus         4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~   83 (193)
T 4hoy_A            4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY   83 (193)
T ss_dssp             CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred             ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence            479999999999999999999999999999999998855 4678899999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  207 (244)
Q Consensus       128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l  207 (244)
                      +++++++||||||||||+|++|+|++||++||||||||+++| |+ +|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 4hoy_A           84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred             CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 45 7999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076          208 DAALEQGVEAVRTLVLNGFDQNISRFNMGQ  237 (244)
Q Consensus       208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~~~  237 (244)
                      ++++++|+++++.|+++|++++||+||+++
T Consensus       162 ~~~i~~a~~~i~~~~~~~~~~amn~~n~~k  191 (193)
T 4hoy_A          162 DGAIDHALSKVKLLVQGQVPQAMNQINAYK  191 (193)
T ss_dssp             HHHHHHHHHTHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            999999999999999999999999999875

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=4.5e-74  Score=501.67  Aligned_cols=185  Identities=35%  Similarity=0.577  Sum_probs=178.2

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~  126 (244)
                      ++||||||||||++|++|||||||+++|+||++++++|.+. ++++.++++.+++.+++|+||+||||+||++|++++++
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (207)
T 3nea_A           22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF  101 (207)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence            36999999999999999999999999999999999998765 67899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~  206 (244)
                      |+|+++++||||||||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~  180 (207)
T 3nea_A          102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKD  180 (207)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 589999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhh
Q 026076          207 IDAALEQGVEAVRTLVLNGFDQNISRF  233 (244)
Q Consensus       207 l~~~i~~a~~al~~~i~~g~~~~mn~~  233 (244)
                      |++++++|++|++.|++++++++||++
T Consensus       181 l~~~i~~a~~a~~~~~~~~~~~amn~~  207 (207)
T 3nea_A          181 IDSAIDNGICFLDDIINYKLEPVMQKL  207 (207)
T ss_dssp             HHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence            999999999999999999999999874

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=8.9e-76  Score=508.36  Aligned_cols=189  Identities=33%  Similarity=0.570  Sum_probs=178.8

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~  126 (244)
                      |++|||||||||++|++|||||||+++|+||++++++|. +.++++.++++.+++++++|+||+||||+||++|+++++|
T Consensus         3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f   82 (194)
T 4fno_A            3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF   82 (194)
Confidence            468999999999999999999999999999999998876 3467888998889999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCC-CCccEEEEccCCCCCccccccccccCCCHHHHH
Q 026076          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE  205 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt-~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~  205 (244)
                      |+|+++++||||||||||+|++|+|.+||++||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++
T Consensus        83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  161 (194)
T 4fno_A           83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  161 (194)
Confidence            9999999999999999999999999999999999999999999 57 799999999999965567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076          206 QIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  237 (244)
Q Consensus       206 ~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~  237 (244)
                      .|++++++|++|++.|+.++++++||+||..+
T Consensus       162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~k  193 (194)
T 4fno_A          162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQK  193 (194)
Confidence            99999999999999999999999999999743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	4e-62
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	3e-53

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  191 bits (485), Expect = 4e-62
 Identities = 142/191 (74%), Positives = 165/191 (86%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           YTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+
Sbjct: 1   YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLV 60

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
            KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+
Sbjct: 61  VKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVI 120

Query: 167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 226
            HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF
Sbjct: 121 EHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGF 180

Query: 227 DQNISRFNMGQ 237
             +  RFN+ Q
Sbjct: 181 SGSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  168 bits (426), Expect = 3e-53
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 1/185 (0%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKP 109
           LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++ L
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
                F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  + 
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKA 183

Query: 230 ISRFN 234
            +R +
Sbjct: 184 TNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0
d1cfza_	162	Hydrogenase maturating endopeptidase HybD {Escheri	81.5

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.4e-74  Score=494.64  Aligned_cols=191  Identities=74%  Similarity=1.218  Sum_probs=179.6

Q ss_pred             cCCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (244)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~  126 (244)
                      |||||||||||||++|++|||||||+++|.||++++.+++..++++.++...+++.+++|+||+||||+||++|++++++
T Consensus         1 ~~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~   80 (191)
T d1ryba_           1 YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAY   80 (191)
T ss_dssp             CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHh
Confidence            68999999999999999999999999999999999999887778899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (244)
Q Consensus       127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~  206 (244)
                      |+++++++||||||||+|+|++|+|.+||++||||||||+++|+++++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~  160 (191)
T d1ryba_          81 YQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQ  160 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHH
T ss_pred             hccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997678899999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076          207 IDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  237 (244)
Q Consensus       207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~  237 (244)
                      |++++++++++++.++.+|++++||+||..+
T Consensus       161 l~~~~~~~~~~~~~~i~~~~~~~mn~~N~~~  191 (191)
T d1ryba_         161 IDTALEQGVDAVRTLVLKGFSGSTERFNLVQ  191 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHhhCCC
Confidence            9999999999999999999999999999754

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.4e-72  Score=480.90  Aligned_cols=191  Identities=32%  Similarity=0.529  Sum_probs=181.1

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (244)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~  127 (244)
                      ++|||||||||++|++|||||||++||.||++++.+|+.. ++.+.++...+.+.+++|+||+||||+||++|++++++|
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHh
Confidence            5799999999999999999999999999999999987643 467888888999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  207 (244)
Q Consensus       128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l  207 (244)
                      ++++++++|||||+|+|+|++|+|++||++||||||||+++||.+++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~l  161 (193)
T d2ptha_          82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999954458999999999998878899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCCCCc
Q 026076          208 DAALEQGVEAVRTLVLNGFDQNISRFNMGQKY  239 (244)
Q Consensus       208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~~~~~  239 (244)
                      +++++.++++++.|+++|++++||+||+.+++
T Consensus       162 ~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~~  193 (193)
T d2ptha_         162 DEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ  193 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCcCCC
Confidence            99999999999999999999999999998763

>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: HybD-like
family: Hydrogenase maturating endopeptidase HybD
domain: Hydrogenase maturating endopeptidase HybD
species: Escherichia coli [TaxId: 562]

Probab=81.50  E-value=0.71  Score=35.61  Aligned_cols=136  Identities=23%  Similarity=0.349  Sum_probs=73.1

Q ss_pred             CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (244)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~  127 (244)
                      |+.+|+|+|||-.    .===+|..+++.|++++...-.                 +-++--    ...|.-+   +.++
T Consensus         1 MrilVlGiGN~l~----gDDgvG~~v~~~L~~~~~~~~~-----------------v~v~d~----g~~~~~l---~~~l   52 (162)
T d1cfza_           1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYILPDY-----------------VEILDG----GTAGMEL---LGDM   52 (162)
T ss_dssp             CCEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCTT-----------------EEEEEE----ETCCGGG---HHHH
T ss_pred             CeEEEEEECCccc----ccCcHHHHHHHHHHHhcCCCCC-----------------eEEEEC----CCCHHHH---HHHH
Confidence            5689999999852    3345999999999998753211                 111110    0122222   2222


Q ss_pred             CCCCCcEEEEeec---cCCCCceEEEccC--------CC-CCCCCchHHHHHhhcCCCCcc-EEEE-ccCCCCCcccccc
Q 026076          128 QVPLRHILVIYDE---MSLMNGVLRLQPK--------GG-HGHHNGLKSVMNHLDGCREFP-RLCI-GIGNPPGKMDMKA  193 (244)
Q Consensus       128 ki~~~~ilVIhDD---ldl~~G~vrlk~~--------Gs-~~GHNGLkSI~~~L~gt~~f~-RLrI-GIGrP~~~~~~~~  193 (244)
                      . ..+ .+||-|.   .+.+.|.++.-..        .+ +.+.=|+..++..+....+++ ++.| ||- |..   + +
T Consensus        53 ~-~~d-~viivDA~~~~~~~pG~v~~~~~~~l~~~~~~~~s~H~~~l~~~l~~~~~~~~~p~~v~lvgie-~~~---~-~  125 (162)
T d1cfza_          53 A-NRD-HLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVI-PES---L-E  125 (162)
T ss_dssp             S-SCS-EEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEEC-CSC---C-C
T ss_pred             c-CCC-eEEEEEEeecCCCCCeEEEEEchhhcccccccCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEEE-Eee---c-c
Confidence            1 233 4566665   3689999986443        11 234458888876542112343 6655 665 322   1 4


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHH
Q 026076          194 YLLQKFSPIEREQIDAALEQGVEAVR  219 (244)
Q Consensus       194 yVLs~Fs~~E~~~l~~~i~~a~~al~  219 (244)
                      | -..+|++=++.++++++...+.++
T Consensus       126 ~-g~~LS~~v~~av~~~~~~i~~~l~  150 (162)
T d1cfza_         126 P-HIGLTPTVEAMIEPALEQVLAALR  150 (162)
T ss_dssp             S-BSSCCHHHHTTHHHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4 245676655555555444444443