Citrus Sinensis ID: 026113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHHHccHHHHHHHccccccHHHccccccccEEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHcccEEEEccccccccccEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHcEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHccccccccEEEEEccccccccccccEEEEcccccEEEEEccEEEc
Coil and Loop (DISEMBL)
MSMASQVIREWmgiqqfppatQTKLLELLGKLKQENVNTLTILVMgkggvgksstVNSIIGEKAVTvstfqsegprpvmvsrsragftlnivdtpglieggyvNYHAIQLIKRFLLNKTIDVLLYvdrldvyrvdnlDKQITRAITDNFGEQIWKRALIVLTHAQlslpdrldyEVFCSKRSEALLkfvspstwmkkkdiqgsfVPVVLVEnsgrcaknendekvsqlpdnriqccfprnvfy
Flexible Loop (DISEMBL)
MSMASQVIREwmgiqqfppATQTKLLELLGKLKQENVNTLTILvmgkggvgkssTVNSIIGEKAvtvstfqsegprpvmvsrsragFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALlkfvspstwmkkkdiqgSFVPVVLVEnsgrcaknendekvsqlpdnriqccfprnvfy
Low Complexity Region (SEG)
MSMASQVIREWMGIQQFPPATQTkllellgklkQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY
Disordered region (IsUnstruct)
******VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF*******VMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSG*****************RIQCCFPR****
Disordered Region (DISOPRED)
*****************************************ILVMGKGGVGKSSTVNSIIGEKAV****************RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY
Disordered Region (DISEMBL)
MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY
Disordered Region (DISPRO)
*****QVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q38906	313	Translocase of chloroplas	yes	no	0.913	0.709	0.716	6e-92
Q41009	310	Translocase of chloroplas	N/A	no	0.921	0.722	0.715	5e-90
O23680	297	Translocase of chloroplas	no	no	0.917	0.750	0.631	2e-82
Q552Z6	449	GTP-binding protein A OS=	yes	no	0.831	0.449	0.327	3e-22
Q9LUS2	1089	Translocase of chloroplas	no	no	0.773	0.172	0.320	1e-21
O81283	1503	Translocase of chloroplas	no	no	0.827	0.133	0.320	9e-21
Q9SLF3	1206	Translocase of chloroplas	no	no	0.773	0.155	0.325	3e-20
Q6S5G3	793	Translocase of chloroplas	no	no	0.748	0.229	0.317	1e-18
Q6P9H5	292	GTPase IMAP family member	yes	no	0.592	0.493	0.300	2e-06
P70224	277	GTPase IMAP family member	yes	no	0.551	0.483	0.290	5e-06

>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2

 Score =  337 bits (863), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 159/222 (71%), Positives = 191/222 (86%)

Query: 4   ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
           A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3   ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62

Query: 64  AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
           A  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN  AI +IKRFLLN TIDVL
Sbjct: 63  AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122

Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
           LYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHAQ S PD L+Y  F SKRS 
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182

Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKI 224

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1

 Score =  330 bits (847), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 161/225 (71%), Positives = 187/225 (83%), Gaps = 1/225 (0%)

Query: 1   MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60
           M+   Q +REW GI  F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1   MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60

Query: 61  GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
           GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTI
Sbjct: 61  GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120

Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
           DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180

Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           RSEALL+ V     + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 181 RSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis.

Pisum sativum (taxid: 3888)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1

 Score =  305 bits (781), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 142/225 (63%), Positives = 182/225 (80%), Gaps = 2/225 (0%)

Query: 7   VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
           ++REW+G QQFP ATQ KL+E  GKLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct: 4   LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63

Query: 67  VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
           VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64  VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123

Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183

Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDN 231
           K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+ 
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNG 226

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Binds GTP, GDP, XTP, but not ATP. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast, especially during early development stages.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 18/220 (8%)

Query: 21  TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
           T  +L E+L  LK    N   +L++G+ GVGKSST+N++ G   + V + +S    P   
Sbjct: 134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTY 191

Query: 81  SRSRAGFTLNIVDTPGLIE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138
           SR   GF LNI+DTPG ++  G  V+ + +  I+R+L  KTI  +L+V++    R D   
Sbjct: 192 SRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAH 251

Query: 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK------------RSEALL 186
           + +    T+  G Q+W+ A +VLT+A   LPD   Y+ F  +            R+    
Sbjct: 252 QLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFR 310

Query: 187 KFVSPS-TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           KF +     + + D     +PV  +ENS RC +NE  ++V
Sbjct: 311 KFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRV 350

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 15/203 (7%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
           + TI+V+GK GVGKS+T+NSI  E  ++   FQ    +   +     G  + ++DTPGL+
Sbjct: 456 SCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLL 515

Query: 99  ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
                 + N   ++ ++ F+     D++LY+DRLD+   D+ D  + R ITD FG  IW 
Sbjct: 516 PSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWF 575

Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
            A++ LTHA  + PD  +     Y++F ++RS  + + +  +      D++    PV LV
Sbjct: 576 NAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLV 630

Query: 211 ENSGRCAKNENDEKVSQLPDNRI 233
           EN   C  N   ++V  LP+ ++
Sbjct: 631 ENHSACRTNRAGQRV--LPNGQV 651

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 30/231 (12%)

Query: 20   ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM 79
            A + K +E   +  +E + +L ILV+GK GVGKS+T+NSI+G +  ++  F         
Sbjct: 836  AAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVRE 895

Query: 80   VSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN 136
            +S +  G  +  +DTPGL         N   +  +K+ +     D++LYVDRLD    D 
Sbjct: 896  ISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDL 955

Query: 137  LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEAL------ 185
             +  + R IT + G  IWK A++ LTHA  + PD      L Y+VF ++ S  +      
Sbjct: 956  NNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQ 1015

Query: 186  ----LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
                L+ ++PS             PV LVEN   C KN   E V  LP+ +
Sbjct: 1016 AVGDLRLMNPSLMN----------PVSLVENHPLCRKNR--EGVKVLPNGQ 1054

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Required for chloroplast biogenesis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 15/203 (7%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
           + TI+V+GK GVGKS+T+NSI  E       FQ    R   V     G  + ++DTPGL+
Sbjct: 574 SCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLL 633

Query: 99  ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
                   N   +  +K F+     D++LY+DRLD+   D+ D  + R I+D FG  IW 
Sbjct: 634 PSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWF 693

Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
            A++ LTHA    PD  +     Y++F ++RS  + + +  +    +        PV LV
Sbjct: 694 NAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLV 748

Query: 211 ENSGRCAKNENDEKVSQLPDNRI 233
           EN   C  N   ++V  LP+ ++
Sbjct: 749 ENHSACRTNRAGQRV--LPNGQV 769

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 13/195 (6%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL- 97
           +L ILV+GK GVGKS+T+NSI G+       F+    R   V  + +G  +  +DTPG  
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225

Query: 98  ---IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
                    N   +  IKR++  +  DV+LY+DRLD+  +   D  + + IT+ FG  IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285

Query: 155 KRALIVLTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
              ++V+TH+  +   R    ++YE +  +R + +  ++  +    K +      PV+LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLV 340

Query: 211 ENSGRCAKNENDEKV 225
           EN   C KN   E V
Sbjct: 341 ENHPSCKKNLAGEYV 355

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 19/163 (11%)

Query: 15  QQFPPA--TQTKLLELLGKLKQENVNT---LTILVMGKGGVGKSSTVNSIIGEKAVTVST 69
           Q+ PP   +Q  +LEL G L+++   T   L +++MGK G GKS+T NSI+G        
Sbjct: 11  QENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGR-----DV 65

Query: 70  FQSE-GPRPVMV-----SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT-IDV 122
           F+S+   RPV       SR  AG  L ++DTP ++        A  + +  +L+      
Sbjct: 66  FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAICQAIVLSAPGPHA 125

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165
           +L V +L   R  + D+Q+ R + + FG  +    ++V T  +
Sbjct: 126 VLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKE 166

Homo sapiens (taxid: 9606)

>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 40  LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----MVSRSRAGFTLNIVDT 94
           L ++++G+ G GKS+T NSI+G+K          G  PV     + SR  AG+ + +VDT
Sbjct: 4   LRLILVGRTGTGKSATGNSILGQKCF----LSRLGAVPVTRSCTLASRMWAGWQVEVVDT 59

Query: 95  PGLI--EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
           P +   E    +   ++  + F+L+      LL V +L  + +   D Q   A+   FG+
Sbjct: 60  PDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGK 117

Query: 152 QIWKRALIVLTHAQLSLPDRLDYEVFCS 179
           Q+  R ++V T  +    D L   V C+
Sbjct: 118 QVMARTVVVFTRQEDLAGDSLQDYVHCT 145

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
225463249	310	PREDICTED: translocase of chloroplast 34	0.930	0.729	0.776	2e-99
147833616	310	hypothetical protein VITISV_028305 [Viti	0.930	0.729	0.776	2e-99
225454878	308	PREDICTED: translocase of chloroplast 34	0.917	0.724	0.744	5e-94
307136094	312	chloroplast outer envelope protein 34 [C	0.930	0.724	0.75	1e-92
192913016	312	Toc34-2 protein [Elaeis guineensis]	0.930	0.724	0.732	2e-91
297810595	313	ATTOC34/OEP34 [Arabidopsis lyrata subsp.	0.925	0.718	0.709	4e-91
390132020	311	chloroplast preprotein import receptor T	0.930	0.726	0.741	9e-91
1151244	313	GTP-binding protein [Arabidopsis thalian	0.913	0.709	0.716	2e-90
449526463	312	PREDICTED: translocase of chloroplast 34	0.930	0.724	0.732	3e-90
449456809	312	PREDICTED: translocase of chloroplast 34	0.930	0.724	0.732	3e-90

>gi|225463249|ref|XP_002274573.1| PREDICTED: translocase of chloroplast 34, chloroplastic [Vitis vinifera] gi|296083376|emb|CBI23265.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/228 (77%), Positives = 204/228 (89%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQ+IREW GIQQFPP TQTKL+ELLGKLKQENV+TLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1   MASQLIREWTGIQQFPPVTQTKLIELLGKLKQENVSTLTILVMGKGGVGKSSTVNSIIGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           +AV VS FQSEGPRPVMVSRSRAGFTLNI+DTPGL+EGGYVN  A+++IKRFLLNKTIDV
Sbjct: 61  RAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVNDQALEIIKRFLLNKTIDV 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVDNLD+Q+ +AITD+FG++IW+R ++VLTHAQLS PD L+YE F SKRS
Sbjct: 121 LLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHAQLSPPDGLNYEDFFSKRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           EAL+K V     ++K+DIQ S +PVVLVENSGRC KNE+DEK+  LP+
Sbjct: 181 EALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEKI--LPN 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833616|emb|CAN63847.1| hypothetical protein VITISV_028305 [Vitis vinifera]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/228 (77%), Positives = 204/228 (89%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQ+IREW GIQQFPP TQTKL+ELLGKLKQENV+TLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1   MASQLIREWTGIQQFPPITQTKLIELLGKLKQENVSTLTILVMGKGGVGKSSTVNSIIGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           +AV VS FQSEGPRPVMVSRSRAGFTLNI+DTPGL+EGGYVN  A+++IKRFLLNKTIDV
Sbjct: 61  RAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVNDQALEIIKRFLLNKTIDV 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVDNLD+Q+ +AITD+FG++IW+R ++VLTHAQLS PD L+YE F SKRS
Sbjct: 121 LLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHAQLSPPDGLNYEDFFSKRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           EAL+K V     ++K+DIQ S +PVVLVENSGRC KNE+DEK+  LP+
Sbjct: 181 EALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEKI--LPN 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454878|ref|XP_002278775.1| PREDICTED: translocase of chloroplast 34, chloroplastic [Vitis vinifera] gi|297737377|emb|CBI26578.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 198/223 (88%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MA Q+IREW GIQQFP AT+TKL+ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSI+GE
Sbjct: 1   MAYQLIREWTGIQQFPLATRTKLIELLGKLKQENVNTLTILVMGKGGVGKSSTVNSILGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           +AVTV+ FQSEGPRPVMVSRS+AGFTLNI+DTPGL+EGGYVN  A+++IKRFLL+KTIDV
Sbjct: 61  RAVTVNAFQSEGPRPVMVSRSQAGFTLNIIDTPGLVEGGYVNDQAVEIIKRFLLDKTIDV 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLDVYR DNLDKQ+ +AITD+FG+QIW+R ++VLTH QLS PD L+YE F S+RS
Sbjct: 121 LLYVDRLDVYRTDNLDKQVVKAITDSFGKQIWRRGVVVLTHGQLSPPDGLNYEDFFSRRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           EAL++ V     ++K+D+Q   +PV+ VENSGRC KNE+DEK+
Sbjct: 181 EALMRVVRLGAGIRKQDLQDFAIPVIPVENSGRCNKNESDEKI 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136094|gb|ADN33942.1| chloroplast outer envelope protein 34 [Cucumis melo subsp. melo]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 195/228 (85%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQVIREW+GI  F  ATQ KLLEL+GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1   MASQVIREWVGINNFAMATQAKLLELMGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           + V+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N  A+++IKRFLLNKTID+
Sbjct: 61  RVVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYINDQALEIIKRFLLNKTIDI 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVDNL+KQ+ +AITD+FG+ IW RALIVLTHAQ S PD L Y+ F S+RS
Sbjct: 121 LLYVDRLDAYRVDNLEKQVIKAITDSFGKAIWSRALIVLTHAQFSPPDGLPYDEFVSRRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           EAL+K V      +K +IQG  +PVVLVENSGRC+KNE DEKV  LP+
Sbjct: 181 EALVKTVRFGASFRKVEIQGLNIPVVLVENSGRCSKNEKDEKV--LPN 226

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192913016|gb|ACF06616.1| Toc34-2 protein [Elaeis guineensis]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/228 (73%), Positives = 194/228 (85%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQ+ REW+GIQQFP ATQ+KL ELLGKLKQENV+TLTILVMGKGGVGKSSTVNSI+GE
Sbjct: 1   MASQLAREWLGIQQFPAATQSKLHELLGKLKQENVSTLTILVMGKGGVGKSSTVNSILGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           +   VS FQSEG RP+M SR+RAGFTLNI+DTPGL+EGGYVN  A+++IKRFLLNKTIDV
Sbjct: 61  RVAAVSAFQSEGLRPMMCSRTRAGFTLNIIDTPGLVEGGYVNEQALEIIKRFLLNKTIDV 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVD+LDKQ+ +AITD FG++IW RAL+VLTHAQLS PD L+Y  F +KRS
Sbjct: 121 LLYVDRLDAYRVDSLDKQVIKAITDTFGKRIWWRALVVLTHAQLSPPDGLNYNDFFAKRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           EALLK++     +KK+ +Q S  PVVLVENSGRC  NEN EK+  LPD
Sbjct: 181 EALLKYIRLGANIKKQALQESVTPVVLVENSGRCKTNENGEKI--LPD 226

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810595|ref|XP_002873181.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata] gi|297319018|gb|EFH49440.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 161/227 (70%), Positives = 194/227 (85%), Gaps = 2/227 (0%)

Query: 4   ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
           A Q  REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3   ALQTPREWIGIQQFPPATQSKLLEILGKFKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62

Query: 64  AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
           A  VSTFQSEG RP +VSRSR+GFTLNI+DTPGLIEGGYVN  AI +IKRFLLN TIDVL
Sbjct: 63  AAAVSTFQSEGLRPTLVSRSRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122

Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
           LYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHAQ S PD L+Y  F S+RS+
Sbjct: 123 LYVDRLDVYRVDDLDRQVVSAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNSFVSRRSD 182

Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           ALLK +     +KK+D+QGS  P++LVENSGRC KN++DEK+  LPD
Sbjct: 183 ALLKVIRTGAQLKKQDLQGSSTPIILVENSGRCHKNDSDEKI--LPD 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390132020|gb|AFL55360.1| chloroplast preprotein import receptor Toc34 [Bienertia sinuspersici]

 Score =  338 bits (868), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 169/228 (74%), Positives = 189/228 (82%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQV+REW GIQQFP ATQ KL ELLGKLKQENV +LTILVMGKGGVGKSSTVNS+IGE
Sbjct: 1   MASQVVREWSGIQQFPGATQAKLFELLGKLKQENVESLTILVMGKGGVGKSSTVNSVIGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           + V VS FQSE  RPVM+SR RAGFTLNI+DTPGL+EGGYVN  AI +IK FLL+KTIDV
Sbjct: 61  RVVAVSAFQSEASRPVMISRQRAGFTLNIIDTPGLVEGGYVNDRAIDMIKSFLLDKTIDV 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVDNLD+QI +AITD+FG+ IWKRA +VLTHAQLS PD L YE F SKRS
Sbjct: 121 LLYVDRLDAYRVDNLDRQIIKAITDSFGKAIWKRAAVVLTHAQLSPPDGLSYEEFFSKRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           EALLK V     +KK+D     +PVVLVENSGRC KNE+ EK+  LP+
Sbjct: 181 EALLKVVRLGGRIKKQDSVAFSMPVVLVENSGRCNKNESGEKI--LPN 226

Source: Bienertia sinuspersici

Species: Bienertia sinuspersici

Genus: Bienertia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1151244|gb|AAD09203.1| GTP-binding protein [Arabidopsis thaliana] gi|11557975|emb|CAC17699.1| atToc34 protein [Arabidopsis thaliana]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/222 (71%), Positives = 191/222 (86%)

Query: 4   ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
           A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3   ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62

Query: 64  AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
           A  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN  AI +IKRFLLN TIDVL
Sbjct: 63  AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122

Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
           LYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHAQ S PD L+Y  F SKRS 
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182

Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKI 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526463|ref|XP_004170233.1| PREDICTED: translocase of chloroplast 34-like [Cucumis sativus]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/228 (73%), Positives = 193/228 (84%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQVIREW+GI  F  ATQ KLLEL+GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1   MASQVIREWVGINNFAMATQAKLLELMGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           +AV+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N  A+++IKRFLLNKTID+
Sbjct: 61  RAVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYINDQALEIIKRFLLNKTIDI 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVDNL+KQ+ +AIT++FG+ IW+RAL+VLTHAQ S PD L Y+ F S+RS
Sbjct: 121 LLYVDRLDAYRVDNLEKQVIKAITNSFGKVIWRRALVVLTHAQFSPPDGLPYDEFVSRRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
            ALL+ V       + D Q   +PVVLVENSGRC+KNE DEKV  LP+
Sbjct: 181 AALLETVRTGGSFIRNDAQVLSIPVVLVENSGRCSKNEKDEKV--LPN 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456809|ref|XP_004146141.1| PREDICTED: translocase of chloroplast 34-like [Cucumis sativus]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/228 (73%), Positives = 193/228 (84%), Gaps = 2/228 (0%)

Query: 3   MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
           MASQVIREW+GI  F  ATQ KLLEL+GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1   MASQVIREWVGINNFAMATQAKLLELMGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 60

Query: 63  KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
           +AV+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N  A+++IKRFLLNKTID+
Sbjct: 61  RAVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYINDQALEIIKRFLLNKTIDI 120

Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
           LLYVDRLD YRVDNL+KQ+ +AIT++FG+ IW+RAL+VLTHAQ S PD L Y+ F S+RS
Sbjct: 121 LLYVDRLDAYRVDNLEKQVIKAITNSFGKVIWRRALVVLTHAQFSPPDGLPYDEFVSRRS 180

Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
            ALL+ V       + D Q   +PVVLVENSGRC+KNE DEKV  LP+
Sbjct: 181 AALLETVRTGGSFIRNDAQVLSIPVVLVENSGRCSKNEKDEKV--LPN 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2175259	313	TOC34 "translocon at the outer	0.913	0.709	0.680	1.8e-78
UNIPROTKB|Q41009	310	TOC34 "Translocase of chloropl	0.934	0.732	0.669	1.1e-76
TAIR|locus:2204923	297	TOC33 "translocon at the outer	0.913	0.747	0.602	2.6e-70
TAIR|locus:2089348	1089	TOC120 "translocon outer compl	0.761	0.169	0.331	8.2e-22
DICTYBASE|DDB_G0275441	449	gtpA "GTP-binding protein, HSR	0.765	0.414	0.334	2.2e-21
TAIR|locus:2132298	1503	TOC159 "translocon at the oute	0.810	0.131	0.328	3.4e-21
TAIR|locus:2059929	1206	TOC132 "multimeric translocon	0.765	0.154	0.333	1.8e-20
TAIR|locus:2149204	793	Toc90 "translocon at the outer	0.761	0.233	0.32	2.2e-18
UNIPROTKB|F1NUA9	220	LOC429682 "Uncharacterized pro	0.563	0.622	0.286	3.6e-07
ZFIN|ZDB-GENE-091204-76	572	si:ch73-308m11.1 "si:ch73-308m	0.633	0.269	0.256	3.9e-07

TAIR|locus:2175259 TOC34 "translocon at the outer envelope membrane of chloroplasts 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 151/222 (68%), Positives = 182/222 (81%)

Query:     4 ASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
             A Q +REW+GIQQFPPATQ+          +E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct:     3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62

Query:    64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
             A  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN  AI +IKRFLLN TIDVL
Sbjct:    63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122

Query:   124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
             LYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHAQ S PD L+Y  F SKRS 
Sbjct:   123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182

Query:   184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
             ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK+
Sbjct:   183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKI 224

GO:0005525 "GTP binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IDA;TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0045036 "protein targeting to chloroplast" evidence=RCA;TAS

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0019750 "chloroplast localization" evidence=TAS

UNIPROTKB|Q41009 TOC34 "Translocase of chloroplast 34" [Pisum sativum (taxid:3888)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 154/230 (66%), Positives = 181/230 (78%)

Query:     1 MSMASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSII 60
             M+   Q +REW GI  F PATQT          QE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct:     1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60

Query:    61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
             GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTI
Sbjct:    61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120

Query:   121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
             DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct:   121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180

Query:   181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
             RSEALL+ V     +KK D Q S +PVVL+ENSGRC KN++DEKV  LP+
Sbjct:   181 RSEALLQVVRSGASLKK-DAQASDIPVVLIENSGRCNKNDSDEKV--LPN 227

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2204923 TOC33 "translocon at the outer envelope membrane of chloroplasts 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 135/224 (60%), Positives = 174/224 (77%)

Query:     7 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
             ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct:     4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63

Query:    67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
             VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct:    64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123

Query:   127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
             DRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct:   124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183

Query:   187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
             K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+
Sbjct:   184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPN 225

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IEA;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=TAS

TAIR|locus:2089348 TOC120 "translocon outer complex protein 120" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 8.2e-22, P = 8.2e-22
 Identities = 67/202 (33%), Positives = 109/202 (53%)

Query:    41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAGFTLNIVDTPGLIE 99
             TI+V+GK GVGKS+T+NSI  E  ++   FQ  G + V  +     G  + ++DTPGL+ 
Sbjct:   458 TIMVLGKSGVGKSATINSIFDELKISTDAFQV-GTKKVQDIEGFVQGIKVRVIDTPGLLP 516

Query:   100 GG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156
                  + N   ++ ++ F+     D++LY+DRLD+   D+ D  + R ITD FG  IW  
Sbjct:   517 SWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFN 576

Query:   157 ALIVLTHAQLSLPD-----RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVE 211
             A++ LTHA  + PD        Y++F ++RS  + + +  +      D++    PV LVE
Sbjct:   577 AIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLVE 631

Query:   212 NSGRCAKNENDEKVSQLPDNRI 233
             N   C  N   ++V  LP+ ++
Sbjct:   632 NHSACRTNRAGQRV--LPNGQV 651

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009536 "plastid" evidence=IDA

DICTYBASE|DDB_G0275441 gtpA "GTP-binding protein, HSR1-related domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 255 (94.8 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 68/203 (33%), Positives = 106/203 (52%)

Query:    38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
             N   +L++G+ GVGKSST+N++ G   + V + +S    P   SR   GF LNI+DTPG 
Sbjct:   150 NECNVLLLGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGF 208

Query:    98 IE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
             ++  G  V+ + +  I+R+L  KTI  +L+V++    R D   + +    T+  G Q+W+
Sbjct:   209 LDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWR 268

Query:   156 RALIVLTHAQLSLPDRLDYEVF--------CSKRSEA----LLKFVSPS-TWMKKKDIQG 202
              A +VLT+A   LPD   Y+ F          K  EA      KF +     + + D   
Sbjct:   269 NAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPP 327

Query:   203 SFVPVVLVENSGRCAKNENDEKV 225
               +PV  +ENS RC +NE  ++V
Sbjct:   328 KHIPVYAMENSRRCKRNEQGQRV 350

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2132298 TOC159 "translocon at the outer envelope membrane of chloroplasts 159" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 3.4e-21, P = 3.4e-21
 Identities = 68/207 (32%), Positives = 104/207 (50%)

Query:    34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93
             +E + +L ILV+GK GVGKS+T+NSI+G +  ++  F         +S +  G  +  +D
Sbjct:   850 EELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFID 909

Query:    94 TPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150
             TPGL         N   +  +K+ +     D++LYVDRLD    D  +  + R IT + G
Sbjct:   910 TPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLG 969

Query:   151 EQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFV 205
               IWK A++ LTHA  + PD      L Y+VF ++ S  + + +  +    +        
Sbjct:   970 TSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMN 1029

Query:   206 PVVLVENSGRCAKNENDEKVSQLPDNR 232
             PV LVEN   C KN    KV  LP+ +
Sbjct:  1030 PVSLVENHPLCRKNREGVKV--LPNGQ 1054

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IMP;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2059929 TOC132 "multimeric translocon complex in the outer envelope membrane 132" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 67/201 (33%), Positives = 102/201 (50%)

Query:    41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
             TI+V+GK GVGKS+T+NSI  E       FQ    R   V     G  + ++DTPGL+  
Sbjct:   576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPS 635

Query:   101 GY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 157
                   N   +  +K F+     D++LY+DRLD+   D+ D  + R I+D FG  IW  A
Sbjct:   636 WSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNA 695

Query:   158 LIVLTHAQLSLPD-----RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212
             ++ LTHA    PD        Y++F ++RS  + + +  +      D++    PV LVEN
Sbjct:   696 IVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLVEN 750

Query:   213 SGRCAKNENDEKVSQLPDNRI 233
                C  N   ++V  LP+ ++
Sbjct:   751 HSACRTNRAGQRV--LPNGQV 769

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2149204 Toc90 "translocon at the outer envelope membrane of chloroplasts 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 64/200 (32%), Positives = 103/200 (51%)

Query:    39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL- 97
             +L ILV+GK GVGKS+T+NSI G+       F+    R   V  + +G  +  +DTPG  
Sbjct:   166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225

Query:    98 -IEGGYV--NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
              +       N   +  IKR++  +  DV+LY+DRLD+  +   D  + + IT+ FG  IW
Sbjct:   226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285

Query:   155 KRALIVLTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
                ++V+TH+  +   R    ++YE +  +R + +  ++  +    K +      PV+LV
Sbjct:   286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLEN-----PVLLV 340

Query:   211 ENSGRCAKNENDEKVSQLPD 230
             EN   C KN   E V  LP+
Sbjct:   341 ENHPSCKKNLAGEYV--LPN 358

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=IMP

UNIPROTKB|F1NUA9 LOC429682 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 41/143 (28%), Positives = 72/143 (50%)

Query:    34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
             Q   + L+I+++GK G GKS+T N+I+G+KA ++  T QS            AG  + +V
Sbjct:     3 QREGSKLSIILVGKTGSGKSATGNTILGKKAFLSTLTAQSLTREYEKAEDCFAGRPIEVV 62

Query:    93 DTPGLIEGGYVNYHAIQLIKRFL--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150
             DTPGL +    N    + IK     L   +  ++ V +L   R+   ++++   +T  F 
Sbjct:    63 DTPGLFDTREANEKTAEKIKNAFQYLYAGVHAIILVMQLG--RISQEEQEVAEWVTKIFN 120

Query:   151 EQIWKRALIVLTHAQ-LSLPDRL 172
              +  K  +++ T A+ L  P+ L
Sbjct:   121 TKAEKYTILLFTRAEELEHPEAL 143

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-091204-76 si:ch73-308m11.1 "si:ch73-308m11.1" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 40/156 (25%), Positives = 76/156 (48%)

Query:    35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVD 93
             E    + ++++GK GVGKS+T N+IIG+    + S+ +S+       +R R+   ++++D
Sbjct:   259 EGEKEVRLVLLGKTGVGKSATANTIIGKNRFKSTSSSRSQTKLCQTETRLRSSKQISVID 318

Query:    94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
             TPGL +        I  I + +   +     ++  + V R    +K   + + + FGEQ+
Sbjct:   319 TPGLYDTELSEKEIITEIAKCITYASPGPHAFIIVIKVGRFTEEEKNTIQQLKEVFGEQM 378

Query:   154 WKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 189
              K ++I+ TH    L ++   E F       L + V
Sbjct:   379 EKYSMIIFTHKD-QLEEKKTIEQFLQDSDPGLKELV 413

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41009	TOC34_PEA	3, ., 6, ., 5, ., -	0.7155	0.9218	0.7225	N/A	no
Q38906	TOC34_ARATH	3, ., 6, ., 5, ., -	0.7162	0.9135	0.7092	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-137
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-109
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-43
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	4e-30
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	4e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-12
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	3e-11
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-10
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-06
cd00880	161	cd00880, Era_like, E	3e-05
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	8e-05
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	6e-04
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-04
TIGR00157	245	TIGR00157, TIGR00157, ribosome small subunit-depen	0.002
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.002
pfam00735	280	pfam00735, Septin, Septin	0.003

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score =  386 bits (993), Expect = e-137
 Identities = 166/229 (72%), Positives = 193/229 (84%), Gaps = 3/229 (1%)

Query: 3   MAS-QVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61
           MAS Q  REW+GIQQFPPATQTKLLELLGKLK+E+V++LTILVMGKGGVGKSSTVNSIIG
Sbjct: 1   MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIG 60

Query: 62  EKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121
           E+  TVS FQSEG RP+MVSR+RAGFTLNI+DTPGLIEGGY+N  A+ +IKRFLL KTID
Sbjct: 61  ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTID 120

Query: 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181
           VLLYVDRLD YRVD LD Q+ RAITD+FG+ IW+++L+VLTHAQ S PD L+Y  F SKR
Sbjct: 121 VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKR 180

Query: 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           SEALL+ +     +KK+D Q   +PV LVENSGRC KNE+DEK+  LPD
Sbjct: 181 SEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKI--LPD 227

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score =  313 bits (804), Expect = e-109
 Identities = 127/224 (56%), Positives = 150/224 (66%), Gaps = 4/224 (1%)

Query: 9   REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS 68
           REW+G Q FP ATQTKL EL  KLK+E   +LTILV+GK GVGKSST+NSI GE+ V+VS
Sbjct: 1   REWVGFQFFPDATQTKLHELEAKLKKELDFSLTILVLGKTGVGKSSTINSIFGERKVSVS 60

Query: 69  TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG--GYVNYHAIQLIKRFLLNKTIDVLLYV 126
            FQSE  RP  VSR+  GF LNI+DTPGL+E     VN   + +IKRFL  KTIDV+LYV
Sbjct: 61  AFQSETLRPREVSRTVDGFKLNIIDTPGLLESQDQRVNRKILSIIKRFLKKKTIDVVLYV 120

Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLD+YRVDNLD  + RAITD+FG  IW+ A++VLTHAQ S PD  +   F   R  A  
Sbjct: 121 DRLDMYRVDNLDVPLLRAITDSFGPSIWRNAIVVLTHAQSSPPDGPNGTPFSYDRFVAQR 180

Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           K +      +         PVVLVENS RC KN   EKV  LP+
Sbjct: 181 KHIVQQAIQQAAGDPDLENPVVLVENSPRCKKNRQGEKV--LPN 222

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  144 bits (366), Expect = 4e-43
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 32/209 (15%)

Query: 40  LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG------PRPVMVSRSRAGFTLNIVD 93
           L I+++GK G GKS+T NSI+G KA     F+S+           +VSR+  G  +N++D
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKA-----FESKLRAQGVTKTCQLVSRTWDGRIINVID 55

Query: 94  TPGLIEGGYVNYHAIQLIKR-FLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
           TPGL +    N    + I R  LL +     +L V  L + R    ++Q  R + + FG 
Sbjct: 56  TPGLFDLSVSNDFISKEIIRCLLLAEPGPHAVLLV--LSLGRFTEEEEQALRTLQELFGS 113

Query: 152 QIWKRALIVLTHAQLSLPDRLDYEVFCSKRS-EALLKFVSP------------STWMKKK 198
           +I    ++V T     L D    + + S    E L + +                  K++
Sbjct: 114 KILDYMIVVFTRKD-DLEDD-SLDDYLSDGCPEFLKEVLRECGGRYVLFNNKADGEEKEE 171

Query: 199 DIQG--SFVPVVLVENSGRCAKNENDEKV 225
            +Q   + V  ++ EN G+   N+  EK+
Sbjct: 172 QVQQLLALVEAIVKENGGKPYTNDLYEKI 200

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score =  117 bits (294), Expect = 4e-30
 Identities = 70/203 (34%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
           +L ILV+GK GVGKS+T+NSI GE   +   F         +     G  + ++DTPGL 
Sbjct: 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLK 177

Query: 99  EGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
                   N   +  +K+F+     D++LYVDRLD+   D+ D  + R ITD  G  IW 
Sbjct: 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWF 237

Query: 156 RALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
            A++ LTHA  + PD      L Y+VF ++RS  + + +  +    +        PV LV
Sbjct: 238 NAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLV 297

Query: 211 ENSGRCAKNENDEKVSQLPDNRI 233
           EN   C KN   +KV  LP+ ++
Sbjct: 298 ENHPACRKNRAGQKV--LPNGQV 318

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score = 65.6 bits (161), Expect = 4e-13
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 15/133 (11%)

Query: 40  LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPV-----MVSRSRAGFTLNIVD 93
           L ++++GK G GKS+T N+I+G K      F+S+     V       S    G  +N++D
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKV-----FESKLSASGVTKTCQKESAVWDGRRVNVID 55

Query: 94  TPGLIEGGYVN-YHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
           TPGL +        + ++I+   L+       L V  L  +  +  ++Q    + + FGE
Sbjct: 56  TPGLFDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLGRFTEE--EEQAVEELQELFGE 113

Query: 152 QIWKRALIVLTHA 164
           ++    +++ T  
Sbjct: 114 KVLDHTIVLFTRG 126

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 43  LVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
           +V+G+GGVGKSS +N+++G +   VS     +  P   +    +    L +VDTPGL E 
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160
           G       +L +  L  +  D++L V           ++     I     ++     ++V
Sbjct: 61  GG--LGREELARLLL--RGADLILLVVDSTDRES---EEDAKLLILRRLRKE-GIPIILV 112

Query: 161 LTHAQLSLPDRLDYEVFCSKRSE 183
                L     ++  +   + ++
Sbjct: 113 GNKIDLLEEREVEELLRLEELAK 135

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 16/190 (8%)

Query: 13  GIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS 72
           G+   P     ++LE L  L+      + +L+MG  G GKSS +N++   +   VS    
Sbjct: 13  GLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV 72

Query: 73  EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY 132
                  +  S  G  L + DTPGL +G   +    QL +   L K   VL  +   D  
Sbjct: 73  GTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD-YLPKLDLVLWLIKADD-- 129

Query: 133 RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-LDY---------EVFCSKRS 182
           R    D+   R +       + KR L V+T A  + P R  D          + F  +++
Sbjct: 130 RALGTDEDFLRDVI---ILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186

Query: 183 EALLKFVSPS 192
           EAL +     
Sbjct: 187 EALGRLFQEV 196

Length = 296

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 41  TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---RPVMVSRSRAGFTLNIVDTPGL 97
            + ++G+  VGKS+ +N++ G K   VS +    P   R  ++     G  + +VDTPGL
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDY----PGTTRDPILGVLGLGRQIILVDTPGL 56

Query: 98  IEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156
           IEG       ++   RFL   +  D++L V  +D         +    I +   +   K 
Sbjct: 57  IEGASEG-KGVEGFNRFLEAIREADLILLV--VD---ASEGLTEDDEEILEELEKLPKKP 110

Query: 157 ALIVLT 162
            ++VL 
Sbjct: 111 IILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 42  ILVMGKGGVGKSSTVNSIIGEKAVTVS----TFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
           I+++G   VGKS+ +N ++G K         T ++     +        +  N++DT G 
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKT--YKFNLLDTAGQ 61

Query: 98  IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNL---DKQITRAITDNFG 150
            +   +     + ++  L  +  D+++ V  ++    + L    K+I         
Sbjct: 62  EDYDAIRRLYYRAVESSL--RVFDIVILVLDVE----EILEKQTKEIIHHAESGVP 111

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 26/132 (19%)

Query: 44  VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM------VSRS---RAGFTLNIVDT 94
           + G+  VGKSS +N+++G+    VS        P+       V +         + ++DT
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVS--------PIPGTTRDPVRKEWELLPLGPVVLIDT 53

Query: 95  PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
           PGL E G +    ++  ++       D++L V   D+  V+  + ++             
Sbjct: 54  PGLDEEGGLGRERVEEARQVA--DRADLVLLVVDSDLTPVE-EEAKLGLLRERG------ 104

Query: 155 KRALIVLTHAQL 166
           K  L+VL    L
Sbjct: 105 KPVLLVLNKIDL 116

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 18  PPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP 77
               + K      KLK +    + + V+G   VGKSS +N+++ +  + V +        
Sbjct: 70  QGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQ 129

Query: 78  VMVSRSRAGFTLNIVDTPGL 97
             V   +    + + DTPG+
Sbjct: 130 QDV---KLDKEIYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 27/94 (28%)

Query: 18  PPATQTKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP 75
             A +    E + +LK++      + + V+G   VGKS+ +N ++G+K    S       
Sbjct: 109 RKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS------- 161

Query: 76  RPVMVSRSRAGFTLNI-----------VDTPGLI 98
                  +R G T  I           +DTPG+I
Sbjct: 162 -------NRPGTTKGIQWIKLDDGIYLLDTPGII 188

Length = 322

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 23/196 (11%)

Query: 36  NVNTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93
            +    I+V+G GGVGK++ +N ++G++       T  +  P   +    R    L + D
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWD 60

Query: 94  TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
           T G  E         + ++         +L+  D       D L ++    + +   + +
Sbjct: 61  TAGQEE--------YRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV 112

Query: 154 WKRALIVLTHAQLSLPDRLD--YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVE 211
                I+L   ++ L D      E+      E +L  ++P     K  +     P  L+E
Sbjct: 113 ----PILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP-----KAVLPEVANP-ALLE 162

Query: 212 NSGRCAKNENDEKVSQ 227
            S +     N  ++ +
Sbjct: 163 TSAKSLTGPNVNELFK 178

Length = 219

>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 21  TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSI---IGEKAVTVSTFQSEG--- 74
           T +K  + L +L +   N +++   G+ GVGKSS +N++   + ++   +S+    G   
Sbjct: 103 TSSKNQDGLKELIEALQNRISVF-AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHT 161

Query: 75  PRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114
              V +     G    I DTPG  E G  +    QL + F
Sbjct: 162 TTHVELFHFHGGL---IADTPGFNEFGLWHLEPEQLTQGF 198

Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 12/76 (15%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---PRPVMVSRSRA-----GFT-- 88
              I+V+G+ G+GKS+ +N++ G K        + G    + V +  S+A     G    
Sbjct: 4   QFNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLK 63

Query: 89  LNIVDTPGLIEGGYVN 104
           L ++DTPG   G  +N
Sbjct: 64  LTVIDTPGF--GDNIN 77

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR---PVMVSRSRA-------GFT 88
            T++V+G+ G+GK++ +N++     +          +    V +  +            
Sbjct: 4  DFTLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLN 63

Query: 89 LNIVDTPG 96
          L ++DTPG
Sbjct: 64 LTVIDTPG 71

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	100.0
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	100.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	100.0
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.98
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.96
COG3596	296	Predicted GTPase [General function prediction only	99.86
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.8
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.79
COG1159	298	Era GTPase [General function prediction only]	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.75
COG0486	454	ThdF Predicted GTPase [General function prediction	99.74
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.72
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.72
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.72
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.71
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
PRK15494	339	era GTPase Era; Provisional	99.7
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.7
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.7
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.7
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.69
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.69
PRK00089	292	era GTPase Era; Reviewed	99.69
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.69
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.68
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.68
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.68
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.68
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.67
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.67
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.67
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.67
PRK03003	472	GTP-binding protein Der; Reviewed	99.67
COG0218	200	Predicted GTPase [General function prediction only	99.67
PRK00093	435	GTP-binding protein Der; Reviewed	99.67
PRK12299	335	obgE GTPase CgtA; Reviewed	99.66
PRK03003	472	GTP-binding protein Der; Reviewed	99.66
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.66
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.66
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.66
PRK12298	390	obgE GTPase CgtA; Reviewed	99.65
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.65
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.65
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.65
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.65
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.65
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.65
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.65
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.65
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.65
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.64
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.64
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.64
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.64
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.64
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.64
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.64
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.64
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.64
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.64
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.64
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.64
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.63
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.63
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.63
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.63
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.63
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.63
PRK00093	435	GTP-binding protein Der; Reviewed	99.63
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.63
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.62
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.62
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.62
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.62
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.62
PRK11058	426	GTPase HflX; Provisional	99.62
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.62
PRK12297	424	obgE GTPase CgtA; Reviewed	99.62
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.62
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.61
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.61
PTZ00369	189	Ras-like protein; Provisional	99.61
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.61
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.6
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.6
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.6
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.6
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.6
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.6
PLN03118	211	Rab family protein; Provisional	99.6
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.6
PLN03110	216	Rab GTPase; Provisional	99.6
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.6
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.6
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.59
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.59
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.59
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.59
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.59
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.59
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.59
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.59
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.59
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.59
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.59
PRK12296	500	obgE GTPase CgtA; Reviewed	99.58
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.58
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.58
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.58
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.58
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.58
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.58
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.58
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.58
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.58
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.58
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.58
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.58
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.57
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.57
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.57
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.57
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.57
PRK04213	201	GTP-binding protein; Provisional	99.57
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.57
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.56
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.56
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.56
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.56
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.56
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.56
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.56
PLN03108	210	Rab family protein; Provisional	99.56
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.56
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.56
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.55
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.55
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.55
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.55
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.55
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.55
PTZ00133	182	ADP-ribosylation factor; Provisional	99.55
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.55
PLN00223	181	ADP-ribosylation factor; Provisional	99.55
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.55
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.54
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.54
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.54
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.54
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.54
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.54
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.54
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.54
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.53
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.53
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.53
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.53
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.52
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.52
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.52
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.51
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.51
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.51
cd00881	189	GTP_translation_factor GTP translation factor fami	99.51
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.51
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.51
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.51
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.51
PLN00023	334	GTP-binding protein; Provisional	99.51
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.5
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.49
KOG0395	196	consensus Ras-related GTPase [General function pre	99.48
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.48
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.48
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.48
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.47
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.47
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.47
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.47
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.47
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.46
COG2262	411	HflX GTPases [General function prediction only]	99.45
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.45
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.45
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.43
PRK09866	741	hypothetical protein; Provisional	99.42
PRK12317	425	elongation factor 1-alpha; Reviewed	99.42
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.42
KOG0394	210	consensus Ras-related GTPase [General function pre	99.42
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.42
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.42
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.41
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.41
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.41
COG1100	219	GTPase SAR1 and related small G proteins [General	99.4
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.4
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.39
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.38
CHL00071	409	tufA elongation factor Tu	99.38
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.37
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.37
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.36
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.34
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.33
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.33
PRK05306	787	infB translation initiation factor IF-2; Validated	99.33
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.33
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.33
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.33
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.32
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.31
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.31
PRK12735	396	elongation factor Tu; Reviewed	99.3
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.3
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.29
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.28
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.28
PLN03127	447	Elongation factor Tu; Provisional	99.28
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.28
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.28
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.28
PRK12736	394	elongation factor Tu; Reviewed	99.27
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.27
CHL00189	742	infB translation initiation factor 2; Provisional	99.26
PLN03126	478	Elongation factor Tu; Provisional	99.26
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.25
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.24
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.23
PRK00049	396	elongation factor Tu; Reviewed	99.23
COG1163	365	DRG Predicted GTPase [General function prediction	99.21
COG0536	369	Obg Predicted GTPase [General function prediction	99.21
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.21
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.2
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.2
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.2
PRK10218	607	GTP-binding protein; Provisional	99.19
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.19
PRK12739	691	elongation factor G; Reviewed	99.19
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.19
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.18
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.18
PRK09601	364	GTP-binding protein YchF; Reviewed	99.18
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.18
PTZ00258	390	GTP-binding protein; Provisional	99.17
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.17
PRK00007	693	elongation factor G; Reviewed	99.17
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.17
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.16
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.15
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.15
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.14
PRK13351	687	elongation factor G; Reviewed	99.11
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.11
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.11
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.11
PTZ00141	446	elongation factor 1- alpha; Provisional	99.11
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.1
PRK04004	586	translation initiation factor IF-2; Validated	99.09
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.08
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.07
COG2229	187	Predicted GTPase [General function prediction only	99.07
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.07
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.05
PRK09602	396	translation-associated GTPase; Reviewed	99.05
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.05
PRK05433	600	GTP-binding protein LepA; Provisional	99.03
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.03
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.02
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.01
PTZ00416	836	elongation factor 2; Provisional	99.01
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.98
COG1161	322	Predicted GTPases [General function prediction onl	98.97
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.97
PLN00043	447	elongation factor 1-alpha; Provisional	98.96
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.93
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.92
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.9
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	98.89
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.86
PRK12740	668	elongation factor G; Reviewed	98.84
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.84
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.83
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.83
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.82
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.82
PRK07560	731	elongation factor EF-2; Reviewed	98.82
PRK12289	352	GTPase RsgA; Reviewed	98.81
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.81
KOG0410	410	consensus Predicted GTP binding protein [General f	98.8
KOG2486	320	consensus Predicted GTPase [General function predi	98.79
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.78
PRK12288	347	GTPase RsgA; Reviewed	98.77
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.77
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.76
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.71
PRK13768	253	GTPase; Provisional	98.7
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.7
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.69
PRK13796	365	GTPase YqeH; Provisional	98.69
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.67
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.64
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.63
PTZ00099	176	rab6; Provisional	98.62
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.61
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.6
PRK00098	298	GTPase RsgA; Reviewed	98.6
COG1162	301	Predicted GTPases [General function prediction onl	98.6
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.58
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.57
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.56
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.55
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.54
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.53
KOG1145	683	consensus Mitochondrial translation initiation fac	98.52
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.52
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.51
KOG0090	238	consensus Signal recognition particle receptor, be	98.5
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.49
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.45
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.42
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.4
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.4
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.4
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.39
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.38
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.37
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.35
PRK14974	336	cell division protein FtsY; Provisional	98.35
COG3523	1188	IcmF Type VI protein secretion system component Va	98.34
PRK10416	318	signal recognition particle-docking protein FtsY;	98.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.3
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.27
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.25
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.24
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.2
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.19
PRK14845	1049	translation initiation factor IF-2; Provisional	98.19
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.16
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.14
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.13
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.12
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.08
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.08
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.08
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.06
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.04
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.02
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.02
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.02
PRK10867	433	signal recognition particle protein; Provisional	98.02
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.02
KOG2484	435	consensus GTPase [General function prediction only	98.01
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.98
cd03112	158	CobW_like The function of this protein family is u	97.95
KOG1673	205	consensus Ras GTPases [General function prediction	97.94
TIGR00959	428	ffh signal recognition particle protein. This mode	97.91
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.87
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.85
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.8
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.8
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	97.8
KOG0781	587	consensus Signal recognition particle receptor, al	97.77
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.77
PRK01889	356	GTPase RsgA; Reviewed	97.76
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.75
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.75
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.75
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.74
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.62
cd03114	148	ArgK-like The function of this protein family is u	97.61
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.59
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.52
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.47
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.43
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.37
PF00004	132	AAA: ATPase family associated with various cellula	97.35
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.33
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.29
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.25
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	97.23
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.21
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	97.12
cd03111	106	CpaE_like This protein family consists of proteins	97.1
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.05
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.05
KOG1143	591	consensus Predicted translation elongation factor	97.03
cd02036	179	MinD Bacterial cell division requires the formatio	97.01
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.01
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.0
KOG1533	290	consensus Predicted GTPase [General function predi	97.0
PRK14737	186	gmk guanylate kinase; Provisional	96.99
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.99
KOG1534	273	consensus Putative transcription factor FET5 [Tran	96.95
COG1341	398	Predicted GTPase or GTP-binding protein [General f	96.95
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.93
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.91
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.91
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	96.91
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.9
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.9
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.85
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.84
PRK14738	206	gmk guanylate kinase; Provisional	96.83
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.81
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.77
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	96.76
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.75
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	96.71
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.71
PRK00300	205	gmk guanylate kinase; Provisional	96.67
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.66
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.66
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	96.65
KOG0460	449	consensus Mitochondrial translation elongation fac	96.65
PRK13851	344	type IV secretion system protein VirB11; Provision	96.64
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.64
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.64
PRK07261	171	topology modulation protein; Provisional	96.63
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	96.55
PRK08118	167	topology modulation protein; Reviewed	96.52
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.51
KOG0464	753	consensus Elongation factor G [Translation, riboso	96.49
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.49
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.49
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.47
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.45
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.44
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.43
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.43
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.42
PRK05480	209	uridine/cytidine kinase; Provisional	96.42
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.41
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.41
COG0523	323	Putative GTPases (G3E family) [General function pr	96.41
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.39
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.39
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.38
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.37
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.37
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.37
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.36
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.35
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.35
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.34
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.33
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.32
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.32
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.31
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.31
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.3
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.3
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.29
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.29
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.29
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.29
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.29
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.28
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.28
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.28
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.28
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.27
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.27
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.26
PRK06217	183	hypothetical protein; Validated	96.26
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.26
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.25
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.25
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.25
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.24
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.24
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.24
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.24
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.23
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.22
COG4988	559	CydD ABC-type transport system involved in cytochr	96.22
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.21
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.21
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.21
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.2
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.2
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.19
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.19
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.18
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.18
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.18
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.18
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.18
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.17
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.17
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.17
smart00382	148	AAA ATPases associated with a variety of cellular	96.17

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=100.00  E-value=5.2e-43  Score=292.26  Aligned_cols=234  Identities=71%  Similarity=1.067  Sum_probs=208.1

Q ss_pred             cccc-chhhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEE
Q 026113            3 MASQ-VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS   81 (243)
Q Consensus         3 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~   81 (243)
                      ||++ ..++|.|+.++|.++++.|.+++.++.+++.+.++|+++|.+|+||||++|+|+|..++.++.+.+.+..+....
T Consensus         1 ~~~~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~   80 (313)
T TIGR00991         1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS   80 (313)
T ss_pred             CCCcccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Confidence            4444 899999999999999999999999999988899999999999999999999999999877777666655555555


Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEE
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  161 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  161 (243)
                      ...+|..+.||||||+.+....+++..+.++.++...++|+||||.++|..++++.+...++.+.+.||+.+|+++|+|+
T Consensus        81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf  160 (313)
T TIGR00991        81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL  160 (313)
T ss_pred             EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence            66789999999999999876666666666777776679999999999987788889999999999999999999999999


Q ss_pred             eCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113          162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP  238 (243)
Q Consensus       162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~  238 (243)
                      ||+|..++++.++++|+.+..+.++++|+.+.+..+...+...+|..++||++.|.+|+..+++  ||++..|+..|
T Consensus       161 Th~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~v--lp~g~~w~~~l  235 (313)
T TIGR00991       161 THAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKI--LPDGTPWIPKL  235 (313)
T ss_pred             ECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeE--CCCCCccHHHH
Confidence            9999988888999999999999999999998887766666677899999999999999999999  99999998765

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=100.00  E-value=5.3e-36  Score=246.86  Aligned_cols=226  Identities=50%  Similarity=0.668  Sum_probs=185.3

Q ss_pred             hhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEE
Q 026113           10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL   89 (243)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~   89 (243)
                      +|.|....+...+..+.++..+..+....+++|+|+|++|+|||||+|+|+|...+.++...+.|.....+...+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i   81 (249)
T cd01853           2 EWTGFQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKL   81 (249)
T ss_pred             CccccccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEE
Confidence            67888999999999999999998888889999999999999999999999999877777777777777777777889999


Q ss_pred             EEEeCCCCCCCCC---CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           90 NIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        90 ~viDTPG~~~~~~---~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .||||||+.+...   .++.....+.+++...++|++|||.++|..++...+..+++.+.+.||.++|.++++|+||+|.
T Consensus        82 ~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~  161 (249)
T cd01853          82 NIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAAS  161 (249)
T ss_pred             EEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence            9999999987732   3345566677777667899999999999878888899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHhhhHH-HHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113          167 SLPDRLDYEVFCSKRSEA-LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP  238 (243)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~-l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~  238 (243)
                      .+++......+..+.... .+.++..+.++... .....+|+.+++|.+.|-+|+..+++  ||++..|+..|
T Consensus       162 ~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~pv~lven~~~c~~n~~~~~v--lp~g~~w~~~~  231 (249)
T cd01853         162 SPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAG-DPRLENPVSLVENHPRCRKNREGEKV--LPNGTVWKPQL  231 (249)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHHHhhhhcc-CccccCCEEEEeCCCcccCCCCCCeE--CCCCCccHHHH
Confidence            877776555444443333 33344444444432 22356899999999999999999999  99999998765

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=100.00  E-value=5.6e-33  Score=248.64  Aligned_cols=198  Identities=35%  Similarity=0.559  Sum_probs=163.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~  114 (243)
                      .+++|+|+|++|+||||++|+|+|...+.+....+.|..+........|..+.||||||+.++....   .+..+.+.++
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            3479999999999999999999999877776655555555555556788999999999999875332   3455566666


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC-----CCHHHHHHhhhHHHHHHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFV  189 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i  189 (243)
                      +...++|+||||++++..+....+..+++.+.+.||..+|+++|||+|++|..+++.     .++++|+.++.+.++++|
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~I  276 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAI  276 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHH
Confidence            666789999999998755555578899999999999999999999999999886543     689999999889999999


Q ss_pred             ccccC-CccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113          190 SPSTW-MKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP  238 (243)
Q Consensus       190 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~  238 (243)
                      +.|.+ ++.+. +...+|..++||++.|.+|+..+++  ||++..|+..|
T Consensus       277 rq~~g~~~l~n-~~~~~Pv~lvEN~~~C~~N~~gekV--LPnG~~W~p~l  323 (763)
T TIGR00993       277 GQAVGDLRLMN-PNLMNPVSLVENHPACRKNRAGQKV--LPNGQVWKPHL  323 (763)
T ss_pred             HHhcCcceecc-cCCCCCEEEEecCCcccCCCCCcee--CCCCchhHHHH
Confidence            99765 44443 5568999999999999999999999  99999997654

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.98  E-value=8.8e-32  Score=217.85  Aligned_cols=182  Identities=30%  Similarity=0.392  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccccc-CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--h
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~  116 (243)
                      ++|+|+|.+|+||||++|+|+|...+... ...+.|..+......++|+.+.||||||+.|+...+++..+.+.+++  +
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            68999999999999999999999987655 33456777888888999999999999999998887777888888765  4


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhh-hHHHHHHHccc-cC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVSPS-TW  194 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~-~~  194 (243)
                      .+++|+||||++++  ++++.+...++.+.+.||.++|+++|||+|++|...+  ..++++++.. ++.+++++++| +|
T Consensus        81 ~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   81 SPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence            68999999998888  8999999999999999999999999999999987633  3489999853 57899999975 56


Q ss_pred             Cccccc----------cC----CCccchhhhcCCCCCCCcCcccc
Q 026113          195 MKKKDI----------QG----SFVPVVLVENSGRCAKNENDEKV  225 (243)
Q Consensus       195 ~~~~~~----------~~----~~i~~~~~~~~~~~~~~~~~~~~  225 (243)
                      |+.+..          |.    .+|+.++.+|++.||++++++++
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~  201 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEA  201 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHH
Confidence            654321          11    58999999999999999988776

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.96  E-value=4.3e-28  Score=194.11  Aligned_cols=179  Identities=23%  Similarity=0.273  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--h
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~  116 (243)
                      ++|+++|++|+|||||+|+|+|...+.... .++.|..+......+.+..+.||||||+.+.....+.....+.+++  .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            589999999999999999999998765443 3456777777777789999999999999987655555555565554  3


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHcccc-CC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST-WM  195 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~  195 (243)
                      .+++|+||+|++++.  +++.+...++.+++.||..+++|+++|+|++|...  ..++++++....+.++.++++|+ ||
T Consensus        81 ~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          81 APGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             CCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            579999999988764  78899999999999999999999999999998763  34789999887789999999964 55


Q ss_pred             cccc---------cc----CCCccchhhhcCCCCCCCcCc
Q 026113          196 KKKD---------IQ----GSFVPVVLVENSGRCAKNEND  222 (243)
Q Consensus       196 ~~~~---------~~----~~~i~~~~~~~~~~~~~~~~~  222 (243)
                      +.+.         .|    ...|..++.+|++.+|++.++
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            3331         11    157899999999999998764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=7e-21  Score=154.56  Aligned_cols=175  Identities=26%  Similarity=0.340  Sum_probs=125.6

Q ss_pred             hcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEE
Q 026113           11 WMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN   90 (243)
Q Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~   90 (243)
                      ..++..++....+...+..+..+-....|++|+++|+||+|||||||+|++.....+...+.++.........+++..+.
T Consensus        11 ~~~~~~~~~~~se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~   90 (296)
T COG3596          11 LKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLV   90 (296)
T ss_pred             hhhhccChHHHHHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceE
Confidence            44455556666666666666555556689999999999999999999999877767776666665555555667888999


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113           91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus        91 viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      +|||||++++...+.+....+++++  +..|++|++++.+...+ ..+..++..+.-...   .+++++++|.+|...+.
T Consensus        91 lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~  164 (296)
T COG3596          91 LWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRAL-GTDEDFLRDVIILGL---DKRVLFVVTQADRAEPG  164 (296)
T ss_pred             EecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccc-cCCHHHHHHHHHhcc---CceeEEEEehhhhhccc
Confidence            9999999999888877777777777  58899999988876434 334445555544332   27999999999986542


Q ss_pred             -C---------CCHHHHHHhhhHHHHHHHcc
Q 026113          171 -R---------LDYEVFCSKRSEALLKFVSP  191 (243)
Q Consensus       171 -~---------~~~~~~~~~~~~~l~~~i~~  191 (243)
                       +         ....++++.+.+.+.++++.
T Consensus       165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~  195 (296)
T COG3596         165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQE  195 (296)
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence             1         12455665555566666554

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.80  E-value=1.6e-18  Score=127.04  Aligned_cols=114  Identities=25%  Similarity=0.395  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~--~~~~~~~~~~~~  118 (243)
                      +|+++|.+|+|||||+|+|++.....++..+++|.........+.+..+.++||||+.+.......  ..+.+.+.+  .
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--S   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--C
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--H
Confidence            689999999999999999999876677888888888766667788999999999999876544321  122222222  6


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      .+|++++|++.+. ...+.+..++++++      ..+|+++|+||
T Consensus        79 ~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             HCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence            8899999988654 33455666666663      23799999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.79  E-value=1.5e-18  Score=132.57  Aligned_cols=122  Identities=17%  Similarity=0.231  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      ++|+++|.+|+|||||+|+|+|.. ..++.+|++|.+...+.....+..+.++||||+++......+ .+..++++....
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcC
Confidence            489999999999999999999999 468889999999888888889999999999998775443321 234455666679


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                      +|++++|++..  ++ +.+..++.++.+.     ..|+++|+||+|..+...
T Consensus        79 ~D~ii~VvDa~--~l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   79 PDLIIVVVDAT--NL-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKG  122 (156)
T ss_dssp             SSEEEEEEEGG--GH-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTT
T ss_pred             CCEEEEECCCC--CH-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcC
Confidence            99999994443  43 3334444455543     379999999999864443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.78  E-value=3.7e-18  Score=140.54  Aligned_cols=124  Identities=20%  Similarity=0.257  Sum_probs=99.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~-~~~~~~~~~~~~  116 (243)
                      +..-++++|++|+|||||+|+|+|.+++.+++.+.+|.....+..+.+..++.++||||+..+...- +-..+.....+ 
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl-   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL-   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-
Confidence            4567999999999999999999999999999999999988888888888999999999998774432 22222333323 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                       .++|+||+|++.+. .+...+...++.++..     ..|+++++||+|...+
T Consensus        84 -~dvDlilfvvd~~~-~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~  129 (298)
T COG1159          84 -KDVDLILFVVDADE-GWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP  129 (298)
T ss_pred             -ccCcEEEEEEeccc-cCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc
Confidence             59999999977664 2677888888888772     2699999999998644

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=3e-18  Score=148.31  Aligned_cols=120  Identities=21%  Similarity=0.284  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~~  117 (243)
                      ..|+++|++|+|||||.|.|+|.+.+.+++.|+.|.+.......|.+..+.+|||+|+.+...  +.+.+.++...  ..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999975442  22222332211  22


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++|+|++... .+++.|..+.++++..     ++|+++|+||+|..
T Consensus        82 ~eADvilfvVD~~~-Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~  125 (444)
T COG1160          82 EEADVILFVVDGRE-GITPADEEIAKILRRS-----KKPVILVVNKIDNL  125 (444)
T ss_pred             HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEcccCc
Confidence            59999999955542 3789999888888843     37999999999975

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=4.4e-18  Score=147.29  Aligned_cols=137  Identities=25%  Similarity=0.355  Sum_probs=105.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~~~~~~~~~  115 (243)
                      .+++|+++|++++|||||+|+|+|++...+++.+++|.+......+++++.+.++||+|.-.-....+  +.+..++..-
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            57999999999999999999999999889999999999999999999999999999999964433332  2222222222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHh
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK  180 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~  180 (243)
                      ....+|++++|++... .+++.+.+.+..+.+.     .+++++|+||||+.+.+....+++.+.
T Consensus       257 aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~  315 (444)
T COG1160         257 AIERADVVLLVIDATE-GISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK  315 (444)
T ss_pred             HHhhcCEEEEEEECCC-CchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH
Confidence            2358999999955543 3778888888777765     379999999999975544555555443

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=2.3e-17  Score=137.07  Aligned_cols=135  Identities=21%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      .+++++..+..-.+|++.|.+|+|||||++++++.+. .+.++|.+|...........+..+++|||||+.|-...+..-
T Consensus       157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~  235 (346)
T COG1084         157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE  235 (346)
T ss_pred             HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH
Confidence            3444445566778999999999999999999999985 788999999988888888889999999999998754433211


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcc-c-ChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYR-V-DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~-~-~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++.-.-.....=.++|||+++....+ + -+.+..+++.+...|.    .|+++|+||+|..
T Consensus       236 IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~  293 (346)
T COG1084         236 IERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA  293 (346)
T ss_pred             HHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence            11110001113468999998876666 2 2455677888888876    5999999999986

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.74  E-value=4.9e-17  Score=141.21  Aligned_cols=124  Identities=24%  Similarity=0.325  Sum_probs=95.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-  115 (243)
                      .+.++++++|+||+|||||+|+|++++.+.|.+.|++|.+........+|.++.++||+|+-++...-+. . -+.+.. 
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~-i-GIeRs~~  292 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER-I-GIERAKK  292 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHH-H-HHHHHHH
Confidence            4779999999999999999999999999999999999999999999999999999999999655433221 1 111111 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ....+|+||+|++.... .++.+...++.+.      ..+|+++|.||.|+..+
T Consensus       293 ~i~~ADlvL~v~D~~~~-~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~  339 (454)
T COG0486         293 AIEEADLVLFVLDASQP-LDKEDLALIELLP------KKKPIIVVLNKADLVSK  339 (454)
T ss_pred             HHHhCCEEEEEEeCCCC-CchhhHHHHHhcc------cCCCEEEEEechhcccc
Confidence            22589999999555432 4566666665111      12699999999999743

>cd01898 Obg Obg subfamily

Probab=99.72  E-value=1e-16  Score=124.76  Aligned_cols=125  Identities=21%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +|+++|.+|+|||||+|+|.+... .++..+.+|..+........+. .+.+|||||+.+...........+.+.+  ..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH--Hh
Confidence            689999999999999999998764 4444455555555555555665 8999999998643322111111111111  37


Q ss_pred             CcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       120 ~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +|++++|+++... ...+....+.+.+..........|+++|+||+|+.+
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  128 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD  128 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence            8999999777543 222333455555555432222479999999999853

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.7e-16  Score=122.67  Aligned_cols=128  Identities=19%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      --+||+|+|.+|+|||+|...+.+... ......+.+.+........+|.  .++||||+|+...+       .....|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr-------tit~syY   79 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR-------TITSSYY   79 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-------hhhHhhc
Confidence            358999999999999999999988763 3333333444555555566665  79999999994332       1222232


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                        +++|+||+|++++..........|++.+.+.....  .|.++|+||+|+.+....+.++.
T Consensus        80 --R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a  137 (205)
T KOG0084|consen   80 --RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEA  137 (205)
T ss_pred             --cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHH
Confidence              59999999999976555566778999999887765  59999999999986666665544

>TIGR00436 era GTP-binding protein Era

Probab=99.72  E-value=1.2e-16  Score=134.03  Aligned_cols=118  Identities=16%  Similarity=0.267  Sum_probs=82.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~~  119 (243)
                      +|+++|++|+|||||+|+|+|.....+++.+.+|...........+.++.+|||||+.+.... .....+....++  .+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hh
Confidence            689999999999999999999987777887777776555444456678999999999765321 111222222333  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|++++|++.+..  ...+..++..+..     ...|+++|+||+|+.
T Consensus        80 aDvvl~VvD~~~~--~~~~~~i~~~l~~-----~~~p~ilV~NK~Dl~  120 (270)
T TIGR00436        80 VDLILFVVDSDQW--NGDGEFVLTKLQN-----LKRPVVLTRNKLDNK  120 (270)
T ss_pred             CCEEEEEEECCCC--CchHHHHHHHHHh-----cCCCEEEEEECeeCC
Confidence            9999999776542  2223344444433     136999999999985

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.71  E-value=3.2e-16  Score=121.76  Aligned_cols=122  Identities=22%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH--HHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI--QLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~--~~~~~~~~~  117 (243)
                      .+|+++|.+|+|||||+|++++... .+...+..|...........+.++.+|||||+.+.........  ..+. .+ .
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~   77 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-A   77 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-H
Confidence            3799999999999999999999874 3333444454444444556678999999999865332221111  1111 11 1


Q ss_pred             CCCcEEEEEEeCCCcc-cC-hhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...|++|+|+++.... +. +....++..+.+.+.   ..|+++|+||+|+.
T Consensus        78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~  126 (168)
T cd01897          78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLL  126 (168)
T ss_pred             hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccC
Confidence            2468999997765322 11 333456666665442   36999999999985

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.71  E-value=7.7e-16  Score=121.37  Aligned_cols=122  Identities=20%  Similarity=0.220  Sum_probs=81.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIK  112 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~---~~~~~~~  112 (243)
                      .+..+|+++|.+|+|||||+|++++.. ...++..+++|..+..+..  + ..+.+|||||+........   ++...+.
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            367899999999999999999999875 3334444444544333322  2 3799999999876543322   2222333


Q ss_pred             HHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          113 RFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       113 ~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++. ...+|++++|++... .++..+..++..+...     ..|+++|+||+|+.
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~  142 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL  142 (179)
T ss_pred             HHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            4442 236789999976653 3666666655555432     36999999999985

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=9.7e-16  Score=128.63  Aligned_cols=124  Identities=19%  Similarity=0.317  Sum_probs=81.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCC--eeEEEEeeeCC--eEEEEEeCCCCCCCCCCcH-
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGP--RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNY-  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~--~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~-  105 (243)
                      -.++|+++|.+|+|||||+|++++.........       ...|.  .........+|  .++.+|||||+++...... 
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999876543221       11121  12223334455  4799999999987643221 


Q ss_pred             --HHHHHHH----HHH------------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 --HAIQLIK----RFL------------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 --~~~~~~~----~~~------------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .+.+++.    .++            ....+|+++|+++.....+.+.+..+++.+.+      ..|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence              1111111    111            12368999999766544566777777777764      26999999999986

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK15494 era GTPase Era; Provisional

Probab=99.70  E-value=4.4e-16  Score=134.42  Aligned_cols=122  Identities=19%  Similarity=0.248  Sum_probs=86.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~~  116 (243)
                      +.++|+++|.+|+|||||+|+|+|.....+++.+.+|..........++.++.+|||||+.+... ......+....++ 
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l-  129 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL-  129 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh-
Confidence            56799999999999999999999998766666666666655556667888999999999965432 2222222222222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++|+|++... .+.+.+..++..+...     ..|.++|+||+|+.
T Consensus       130 -~~aDvil~VvD~~~-s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~  173 (339)
T PRK15494        130 -HSADLVLLIIDSLK-SFDDITHNILDKLRSL-----NIVPIFLLNKIDIE  173 (339)
T ss_pred             -hhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence             58999999966432 3555555566555432     25788999999985

>cd01895 EngA2 EngA2 subfamily

Probab=99.70  E-value=7.6e-16  Score=119.55  Aligned_cols=126  Identities=26%  Similarity=0.349  Sum_probs=81.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~~~~~~~~~  115 (243)
                      .+++|+++|.+|+|||||+|+|++.........+.++...........+..+.+|||||+.+......  +.........
T Consensus         1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            36899999999999999999999987544555555555554455566788899999999976532211  1111111111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ...++|++++|++.... .+.....++..+..   .  ..|+++|+||+|+.+.
T Consensus        81 ~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          81 AIERADVVLLVIDATEG-ITEQDLRIAGLILE---E--GKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHhhcCeEEEEEeCCCC-cchhHHHHHHHHHh---c--CCCEEEEEeccccCCc
Confidence            12589999999776532 33333333333322   1  2699999999998633

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.70  E-value=8.2e-16  Score=117.59  Aligned_cols=119  Identities=24%  Similarity=0.304  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~-~~~~~~~~~~~~~  118 (243)
                      ++|+++|.+|+|||||+|++++.........++++...........+.++.+|||||+.+...... ........+  ..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREA--IE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHH--Hh
Confidence            589999999999999999999987655566666666655555666788999999999976543211 111111122  25


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .+|++++|++++. ..+..+...+..   .    ...|+++|+||+|+.+
T Consensus        80 ~~~~~v~v~d~~~-~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~  121 (157)
T cd04164          80 EADLVLFVIDASR-GLDEEDLEILEL---P----ADKPIIVVLNKSDLLP  121 (157)
T ss_pred             hCCEEEEEEECCC-CCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence            8999999988764 233333333322   1    2379999999999863

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.70  E-value=2.6e-16  Score=120.49  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=80.7

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCCc
Q 026113           43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTID  121 (243)
Q Consensus        43 llvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~~~~~~~  121 (243)
                      +++|.+|+|||||+|+|++.........+++|...........+..+.+|||||+.+... ...........++  .++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCC
Confidence            478999999999999999987555556666666666666677888999999999976533 1111111222222  4799


Q ss_pred             EEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       122 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++++|++... ..+..+..+.++++..     ..|+++|+||+|+.
T Consensus        79 ~ii~v~d~~~-~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~  118 (157)
T cd01894          79 VILFVVDGRE-GLTPADEEIAKYLRKS-----KKPVILVVNKVDNI  118 (157)
T ss_pred             EEEEEEeccc-cCCccHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence            9999977643 2334444455555432     27999999999985

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.69  E-value=9.5e-16  Score=117.98  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH-HHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI-QLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~-~~~~~~~~  116 (243)
                      ..++|+++|.+|+|||||+|++++.........+.++...........+..+.+|||||+.+......+.. +.....  
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--   79 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA--   79 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH--
Confidence            46899999999999999999999987655554444443333333444567899999999976543322221 111222  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...+|++++|++.... .......+.+.+...     ..|+++|+||+|+.
T Consensus        80 ~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~  124 (168)
T cd04163          80 LKDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV  124 (168)
T ss_pred             HHhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence            2589999999777542 344455555555432     26999999999985

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.69  E-value=9.5e-16  Score=132.72  Aligned_cols=125  Identities=18%  Similarity=0.197  Sum_probs=83.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-  115 (243)
                      ..++|+++|.+|+|||||+|+|++.. +.+.+.+.+|.++......+ ++.++.+|||||+...  ...+..+.++..+ 
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tle  264 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATLE  264 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHHH
Confidence            34899999999999999999999987 35566666677776666666 5789999999998432  1112222222221 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+|++|+|+++......+....+...+... +. ...|+++|+||+|+.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~  314 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLL  314 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCC
Confidence            124899999997775322222222333444433 31 136999999999985

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK00089 era GTPase Era; Reviewed

Probab=99.69  E-value=7.9e-16  Score=130.52  Aligned_cols=122  Identities=21%  Similarity=0.291  Sum_probs=86.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~  116 (243)
                      +...|+++|.+|+|||||+|+|+|.+.+.+++.+.+|...........+.++.++||||+.+....-.+ ........+ 
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~-   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL-   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH-
Confidence            457799999999999999999999998777776666655444444445579999999999765422111 112222222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..+|++++|++++. .++..+..+++.+..     ...|+++|+||+|+.
T Consensus        83 -~~~D~il~vvd~~~-~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~  126 (292)
T PRK00089         83 -KDVDLVLFVVDADE-KIGPGDEFILEKLKK-----VKTPVILVLNKIDLV  126 (292)
T ss_pred             -hcCCEEEEEEeCCC-CCChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence             58999999977764 355556655555552     136999999999985

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.7e-16  Score=122.23  Aligned_cols=128  Identities=15%  Similarity=0.142  Sum_probs=92.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+|+|.+|+|||||+-.+..... .....++.+..........++  .++.||||+|+......-+.   ++    
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapM---Yy----   75 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPM---YY----   75 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCcc-ccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccc---ee----
Confidence            469999999999999999988876652 332333333333444444555  67889999999765444432   22    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                        +++++.|+|++++........+.|++.|++..+.+  ..+.+|+||+|+...+.+++++.
T Consensus        76 --RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea  133 (200)
T KOG0092|consen   76 --RGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEA  133 (200)
T ss_pred             --cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHH
Confidence              59999999999987655566788888888877643  35778999999987667666654

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.68  E-value=2.5e-15  Score=116.27  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++.... ....+..+.+.........  ...+.+|||||....       ......++  
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--   70 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEVRNEFY--   70 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHHHHHHh--
Confidence            58999999999999999999988742 2222222222222223333  357889999998421       11112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc---cccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~---~~~~~~ivV~tk~D~~~  168 (243)
                      .++|++|+|++++.....+....|+..+.+....   ....|+++|+||+|+.+
T Consensus        71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  124 (168)
T cd04119          71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK  124 (168)
T ss_pred             ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence            5899999998876533223445677777665542   13379999999999863

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.68  E-value=9.8e-16  Score=122.67  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=78.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC----CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ----SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      +++|+++|.+|+|||||+|+|+|.........+    .++.....+.. .....+.+|||||+.+.....++..+.    
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~----   75 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEE----   75 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence            589999999999999999999986532211111    11111111111 123479999999998765443333222    


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ....++|++++|  .+. ++++.+..+++.+.+. +    +|+++|+||+|+..
T Consensus        76 ~~~~~~d~~l~v--~~~-~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~  121 (197)
T cd04104          76 MKFSEYDFFIII--SST-RFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL  121 (197)
T ss_pred             hCccCcCEEEEE--eCC-CCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence            122578999998  333 5788899999888775 3    68999999999853

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04140 ARHI_like ARHI subfamily

Probab=99.68  E-value=1.1e-15  Score=118.67  Aligned_cols=122  Identities=21%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCee-EEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP-VMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      +||+++|.+|+|||||++++++... .....+...... ...........+.+|||||.......   .    ..++  .
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~----~~~~--~   71 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAM---Q----RLSI--S   71 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHH---H----HHHh--h
Confidence            7899999999999999999998763 222222211111 11112223457899999998543211   1    1111  4


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc-ccccEEEEEeCCCCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~~~~~~  171 (243)
                      ++|++++|++++.....+....+++.+.+..+.. ...|+++|+||+|+.+.+.
T Consensus        72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~  125 (165)
T cd04140          72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE  125 (165)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe
Confidence            8899999988876443344566666676655422 3469999999999864333

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.68  E-value=1.5e-15  Score=135.44  Aligned_cols=120  Identities=18%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~~  119 (243)
                      +|+++|++|+|||||+|.|++...+.+...++.|.+.......+.+..+.+|||||+...... .+...+....++  .+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hh
Confidence            589999999999999999999887677888888888878888889999999999998543211 112222222222  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +|++++|++... ..+..+..+.+++++.     .+|+++|+||+|+..
T Consensus        79 ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~  121 (429)
T TIGR03594        79 ADVILFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK  121 (429)
T ss_pred             CCEEEEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence            999999976643 3566677777777653     379999999999863

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01864 Rab19 Rab19 subfamily

Probab=99.67  E-value=5e-15  Score=114.86  Aligned_cols=121  Identities=13%  Similarity=0.112  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++.+...... ..+..+.+.......+++  ..+.+|||||...       .......++ 
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~-   73 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY-   73 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh-
Confidence            58999999999999999999987653221 112222222233344555  4789999999632       111122222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                       ..+|++++|++++.....+....|+..+......  ..|+++|+||+|+...+.
T Consensus        74 -~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~~~  125 (165)
T cd01864          74 -RSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS--NVVLLLIGNKCDLEEQRE  125 (165)
T ss_pred             -ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccccc
Confidence             4799999998887543233445677776654322  368999999999864433

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01861 Rab6 Rab6 subfamily

Probab=99.67  E-value=2.3e-15  Score=116.00  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .||+++|++|+|||||+|++++.... ....+..+.+.........+  ..+.+|||||....       ...+..++  
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~--   70 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RSLIPSYI--   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--
Confidence            48999999999999999999988743 23333334444444444555  36899999996321       11222222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..+|++++|++++.....+....++..+....+.  ..|+++|+||+|+...
T Consensus        71 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~  120 (161)
T cd01861          71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK  120 (161)
T ss_pred             ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence            5889999998886533223334566665554433  3699999999998533

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.67  E-value=2e-15  Score=134.92  Aligned_cols=121  Identities=23%  Similarity=0.309  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~  116 (243)
                      ..++|+++|.+|+|||||+|+|++.+...+.+.+++|.+.......++|.++.+|||||+.++...-+. ..+....+  
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~--  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA--  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH--
Confidence            568999999999999999999999886667777888877777777788999999999999653221111 01111112  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ...+|++++|++.+.. .+..+...+   ..    ....|+++|+||+|+.+
T Consensus       292 ~~~aD~il~VvD~s~~-~s~~~~~~l---~~----~~~~piiiV~NK~DL~~  335 (449)
T PRK05291        292 IEEADLVLLVLDASEP-LTEEDDEIL---EE----LKDKPVIVVLNKADLTG  335 (449)
T ss_pred             HHhCCEEEEEecCCCC-CChhHHHHH---Hh----cCCCCcEEEEEhhhccc
Confidence            2589999999776432 222233222   22    12369999999999863

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.67  E-value=2.2e-15  Score=134.04  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=86.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~-~~~~~~~~  115 (243)
                      ...++|+++|.+|+|||||+|++++.....+...+++|.+.......++|.++.+|||||+.+....-+.. .+....++
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            36799999999999999999999998766777888888777777778889999999999996543211110 11111222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+|++++|++.+.. .+..+. ++..+..     ...|+++|+||+|+.
T Consensus       281 --~~aD~il~V~D~s~~-~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~  323 (442)
T TIGR00450       281 --KQADLVIYVLDASQP-LTKDDF-LIIDLNK-----SKKPFILVLNKIDLK  323 (442)
T ss_pred             --hhCCEEEEEEECCCC-CChhHH-HHHHHhh-----CCCCEEEEEECccCC
Confidence              589999999777542 222232 4333321     136999999999985

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.67  E-value=1.9e-15  Score=136.05  Aligned_cols=123  Identities=20%  Similarity=0.273  Sum_probs=89.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~  115 (243)
                      ....+|+++|.+|+|||||+|+|++...+.+...++.|.+.......+.+..+.+|||||+..... ...........++
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            355799999999999999999999987666677777777777777778899999999999863211 1112222222222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+|++|+|++... ..+..+..+..++...     ..|+++|+||+|+.
T Consensus       116 --~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~  159 (472)
T PRK03003        116 --RTADAVLFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE  159 (472)
T ss_pred             --HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence              48999999987754 2445556666666532     37999999999985

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.5e-15  Score=118.88  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=89.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~  113 (243)
                      ....|+++|++|+|||||||+|+|.. .+.++..|+.|+....+.  +++. +.+||.||++-.....   +++...+.+
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ecCc-EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            45799999999999999999999965 577888888877544433  3332 8899999998665443   345556666


Q ss_pred             HHhc-CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          114 FLLN-KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       114 ~~~~-~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      |+.. ....+++++  +|..+ +.+.|.++++++.+.     ..|+++|+||+|...
T Consensus       100 YL~~R~~L~~vvll--iD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~  149 (200)
T COG0218         100 YLEKRANLKGVVLL--IDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLK  149 (200)
T ss_pred             HHhhchhheEEEEE--EECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCC
Confidence            7643 345666666  44434 667789999888875     379999999999873

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.67  E-value=1.8e-15  Score=135.23  Aligned_cols=120  Identities=17%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~  118 (243)
                      .+|+++|.+|+|||||+|+|++...+.+...++.|.+.......+.+..+.+|||||+.+.... .....+....++  .
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI--E   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence            5899999999999999999999987667777888877777777888999999999999763221 111111122222  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++|++|+|++... ..+..+..+.+++++.     ..|+++|+||+|+.
T Consensus        80 ~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~  122 (435)
T PRK00093         80 EADVILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP  122 (435)
T ss_pred             hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence            8999999977654 3556666666666653     36999999999964

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=2.2e-15  Score=129.51  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ..|.++|.+|||||||+|+|++... .++.++.+|..+......+ ++.++.+|||||+.+........-..+.+++  .
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e  235 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--E  235 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--h
Confidence            4789999999999999999998764 4677788888877777766 5678999999999765433222211222222  3


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++++++|++++.....+....+.+.+......-..+|+++|+||+|+.
T Consensus       236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~  284 (335)
T PRK12299        236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL  284 (335)
T ss_pred             hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence            7899999977754222223344555554432211247999999999985

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.66  E-value=1.5e-15  Score=136.72  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~--~~~~~~~~~~~~  115 (243)
                      ...+|+++|.+|+|||||+|+|++.....++..+++|.+.......+++..+.+|||||+......  ..+....++...
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~  289 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA  289 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence            468999999999999999999999876566777777777766666778899999999998543221  123333333222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+|++++|++++. ..+..+..++..+..     ..+|+++|+||+|+.
T Consensus       290 ~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~  335 (472)
T PRK03003        290 AIEAAEVAVVLIDASE-PISEQDQRVLSMVIE-----AGRALVLAFNKWDLV  335 (472)
T ss_pred             HHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence            2258999999977754 345555555554443     136999999999986

>cd04136 Rap_like Rap-like subfamily

Probab=99.66  E-value=3.7e-15  Score=115.04  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++.+...  .....+++..........++  ..+.+|||||........       ..++ 
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-   70 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMR-------DLYI-   70 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHH-------HHHh-
Confidence            37999999999999999999997653  22222222222223334444  467889999985432111       1122 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++.....+....+++.+.+.... ...|+++|+||+|+.+
T Consensus        71 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  120 (163)
T cd04136          71 -KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED  120 (163)
T ss_pred             -hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence             4899999998886543223445566666554322 2369999999999864

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04120 Rab12 Rab12 subfamily

Probab=99.66  E-value=4.9e-15  Score=118.95  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.|+++|..|+|||||++.+..... .....++.+..........++  ..+.+|||+|.....       .....++  
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~-------~l~~~y~--   70 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYY--   70 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH-------HHHHHHh--
Confidence            4799999999999999999997663 222222222233333345555  578999999984321       1112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      .++|++++|++++.....+....|+..+.+....+  .|+++|+||+|+...+..+
T Consensus        71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~~~v~  124 (202)
T cd04120          71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREIS  124 (202)
T ss_pred             cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccC
Confidence            58999999999876443344456777766654433  6999999999996444433

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01878 HflX HflX subfamily

Probab=99.66  E-value=5.5e-15  Score=118.77  Aligned_cols=125  Identities=17%  Similarity=0.136  Sum_probs=78.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~-  115 (243)
                      ..++|+++|.+|+|||||+|.+++... .+...+..|..+......+.+. .+.+|||||+.+...  ....+.+.... 
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~  116 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLE  116 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHH
Confidence            458999999999999999999999864 2223333343444444444444 899999999864321  12111121111 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+|++++|++++..........+.+.+......  ..|+++|+||+|+.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~  166 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLL  166 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccC
Confidence            124899999998775432223233444555443222  26999999999986

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.65  E-value=3.7e-15  Score=130.56  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      .|.+||.+|||||||+|+|++... .++.+|.+|..+........+ .++.++||||+..........-..+.+.+  ..
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~r  237 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ER  237 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH--Hh
Confidence            799999999999999999999875 678888888888887776664 57999999999865433221111222222  48


Q ss_pred             CcEEEEEEeCC---CcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLD---VYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d---~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++++++|+++.   .....+....+++.+......-..+|+++|+||+|+.
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~  288 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL  288 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence            89999997654   1122233345555555432211237999999999985

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.65  E-value=1e-14  Score=113.47  Aligned_cols=123  Identities=16%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++.+... .....++.+...........+  ..+.+|||||.....       .....++ 
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~-   73 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY-   73 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh-
Confidence            48999999999999999999998763 222223322222222333444  478999999973221       1111222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       .++|++++|++++.......-..++..+......  ..|+++|+||+|+.+.....
T Consensus        74 -~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~~~~~  127 (167)
T cd01867          74 -RGAMGIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEEKRVVS  127 (167)
T ss_pred             -CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccccCCC
Confidence             4899999998886533222334566656554322  36999999999996443333

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=99.65  E-value=8.9e-15  Score=113.56  Aligned_cols=120  Identities=14%  Similarity=0.097  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++.+.... ....++.+..........++  ..+.+|||||.....        .+.... .
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~--------~~~~~~-~   71 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR--------TITTAY-Y   71 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH--------HHHHHH-c
Confidence            79999999999999999999987632 11122222111111222333  579999999974221        111111 1


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                      .++|++++|++++.....+.-..|++.+......  ..|+++|+||+|+.+.+.
T Consensus        72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~~~  123 (165)
T cd01865          72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDERV  123 (165)
T ss_pred             cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcccc
Confidence            5899999998876433223334566665544322  258999999999964433

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.65  E-value=6.9e-16  Score=120.54  Aligned_cols=121  Identities=21%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcE
Q 026113           44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV  122 (243)
Q Consensus        44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (243)
                      ++|++|+|||||+|+|++... .+...+.+|..+......+. +.++.+|||||+.+.....+.....+...+  .++|+
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH--hccCE
Confidence            579999999999999999875 44555555555555555667 889999999998643222211111111111  37999


Q ss_pred             EEEEEeCCCcc------cChhHHHHHHHHHHHhcc-----cccccEEEEEeCCCCC
Q 026113          123 LLYVDRLDVYR------VDNLDKQITRAITDNFGE-----QIWKRALIVLTHAQLS  167 (243)
Q Consensus       123 il~v~~~d~~~------~~~~~~~~l~~l~~~~~~-----~~~~~~ivV~tk~D~~  167 (243)
                      +++|++.....      ..+....+...+......     ....|+++|+||+|+.
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~  133 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD  133 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence            99997765421      111222333333322211     1247999999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.65  E-value=3.5e-15  Score=133.04  Aligned_cols=124  Identities=25%  Similarity=0.357  Sum_probs=89.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~--~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.+...+...+++|.+.........+..+.+|||||+.+.....+.  .....+...
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            458999999999999999999999876566777777776666666778889999999999765543321  111111111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+|++++|++... ..+..+..++..+.+.     .+|+++|+||+|+.
T Consensus       251 ~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       251 AIERADVVLLVLDATE-GITEQDLRIAGLILEA-----GKALVIVVNKWDLV  296 (429)
T ss_pred             HHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence            2258999999977754 3556666655554432     26999999999986

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01868 Rab11_like Rab11-like

Probab=99.65  E-value=1.1e-14  Score=112.88  Aligned_cols=121  Identities=16%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -++|+++|.+|+|||||+|++++... .....++.+...........+  ..+.+|||||...       .......++ 
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~-   73 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY-   73 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence            37999999999999999999998864 222233333333333444455  3689999999732       111112222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                       ..++++++|+++........-.+++..+.+....  ..|+++|+||+|+...+.
T Consensus        74 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~~  125 (165)
T cd01868          74 -RGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRA  125 (165)
T ss_pred             -CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccc
Confidence             4789999998875433223334566666555432  269999999999864333

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04142 RRP22 RRP22 subfamily

Probab=99.65  E-value=7.9e-15  Score=117.51  Aligned_cols=126  Identities=16%  Similarity=0.143  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCC-cHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||++.+++.... ....|..+.........+++  ..+.+|||||..+.... ..+.......++ 
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~-   78 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL-   78 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh-
Confidence            58999999999999999999987632 22223332222222344566  46889999998643221 222221111112 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-ccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~~~  168 (243)
                       ..+|++++|++++.....+....+.+.+..... .....|+++|+||+|+..
T Consensus        79 -~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          79 -RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence             589999999888643222333455555555431 112369999999999953

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.65  E-value=3.8e-15  Score=114.31  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=77.5

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEE
Q 026113           44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL  123 (243)
Q Consensus        44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~i  123 (243)
                      ++|.+|+|||||+|++++.. +.++..+++|.........+.+..+.+|||||+.+......+ ....+.++...++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED-EKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-HHHHHHHhcCCCCcEE
Confidence            57999999999999999986 355556666666655566677889999999999765443211 1112233333689999


Q ss_pred             EEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       124 l~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ++|++...  . +....+...+.+     ..+|+++|+||+|+.+
T Consensus        79 i~v~d~~~--~-~~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~  115 (158)
T cd01879          79 VNVVDATN--L-ERNLYLTLQLLE-----LGLPVVVALNMIDEAE  115 (158)
T ss_pred             EEEeeCCc--c-hhHHHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence            99966643  2 222333333332     1379999999999863

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.65  E-value=6.2e-15  Score=113.86  Aligned_cols=119  Identities=21%  Similarity=0.179  Sum_probs=75.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++++...  .....+++...........+  ..+.+|||||..+...       ....++ 
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~-   71 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-------MREQYM-   71 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-------HHHHHH-
Confidence            47999999999999999999998753  22322222222222334455  4688999999853321       112222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                       .++|++++|++++.....+....+...+...... ...|+++|+||+|+...
T Consensus        72 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          72 -RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ  122 (164)
T ss_pred             -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence             4889999998886533223334455555544322 23699999999998633

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1e-15  Score=118.19  Aligned_cols=130  Identities=14%  Similarity=0.081  Sum_probs=93.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +..|++++|..++||||||+.++-... .....+..+.+.......+.|+  .+++|||+|+...+..-+       .|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslip-------sY~   92 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SYI   92 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhh-cccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhh-------hhc
Confidence            558999999999999999999996652 3333344444444444455554  799999999953332221       222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  178 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~  178 (243)
                        +++.++++|+++......+.-.+|++.+...-|.+- ..+++|+||.||.+++..+.++-.
T Consensus        93 --Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg~  152 (221)
T KOG0094|consen   93 --RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEGE  152 (221)
T ss_pred             --cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHHH
Confidence              589999999999765555667788888887777532 579999999999977776666554

>cd04122 Rab14 Rab14 subfamily

Probab=99.64  E-value=1.5e-14  Score=112.38  Aligned_cols=121  Identities=16%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||++++.+...  ....+++ +...........+  ..+.+|||||....       ......++ 
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~-   72 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYY-   72 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh-
Confidence            7999999999999999999997753  2222222 2222222233444  47899999997321       11122222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       .++|++++|++++.....+....++..+......  ..|+++|+||+|+......+
T Consensus        73 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~~~~~  126 (166)
T cd04122          73 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEAQRDVT  126 (166)
T ss_pred             -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCcC
Confidence             5899999998886533223334555555443322  36899999999996444333

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01866 Rab2 Rab2 subfamily

Probab=99.64  E-value=1.4e-14  Score=112.86  Aligned_cols=124  Identities=15%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||++++++........ +..+.+.........+  ..+.+|||||...       .......++ 
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~-   74 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYY-   74 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh-
Confidence            3799999999999999999999876422222 2222222222233333  4789999999631       111122233 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                       ..+|++++|++++.....+....|+..+.+....  ..|+++|+||.|+......+.
T Consensus        75 -~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pvivv~nK~Dl~~~~~~~~  129 (168)
T cd01866          75 -RGAAGALLVYDITRRETFNHLTSWLEDARQHSNS--NMTIMLIGNKCDLESRREVSY  129 (168)
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccCCCH
Confidence             4899999998876433223344566655554322  369999999999864433333

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.64  E-value=1e-14  Score=112.54  Aligned_cols=121  Identities=17%  Similarity=0.120  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +||+++|.+|+|||||++++++.... ....++.+.+........    ....+.+|||||..+.       ......++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~   72 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAITKAYY   72 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHhHHHHh
Confidence            48999999999999999999987532 111122222211122222    2457999999997321       11122233


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        .++|++++|++++.....+....|+..+.....   ..|+++|+||+|+......+
T Consensus        73 --~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~v~  125 (162)
T cd04106          73 --RGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVIT  125 (162)
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccCCC
Confidence              589999999888654322334455655554332   36999999999986443433

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.64  E-value=1.4e-14  Score=112.36  Aligned_cols=123  Identities=21%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++++... .....++.+...........+  ..+.+|||||....       ......++ 
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~-   72 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY-   72 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh-
Confidence            37999999999999999999998763 222223333222223334444  46899999997321       11112222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       ..+|++++|++++.......-..++..+......  ..|+++|+||+|+.......
T Consensus        73 -~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~  126 (166)
T cd01869          73 -RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDKRVVD  126 (166)
T ss_pred             -CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccccCCC
Confidence             5899999998876432222234455555544322  36999999999986443333

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04175 Rap1 Rap1 subgroup

Probab=99.64  E-value=9.2e-15  Score=113.20  Aligned_cols=118  Identities=18%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++||+++|.+|+|||||+++++....  ....++++...........+  ..+.+|||||........       ..++ 
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-   70 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR-------DLYM-   70 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHH-------HHHH-
Confidence            47999999999999999999986542  22222333222223334444  357799999985332111       1112 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++.....+...+++..+..... ....|+++|+||+|+..
T Consensus        71 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (164)
T cd04175          71 -KNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  120 (164)
T ss_pred             -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence             488999999887653322334456666554322 12369999999999864

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.64  E-value=6.2e-15  Score=126.59  Aligned_cols=125  Identities=18%  Similarity=0.188  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ..|+++|.+|||||||+|+|++... .++.++.+|..+......+.+ ..+.+|||||+.+...........+.+.+  .
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--e  234 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--E  234 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--H
Confidence            5899999999999999999998764 466777778777777777766 89999999999754432211111122222  3


Q ss_pred             CCcEEEEEEeCCCc---ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++++++|++++..   ...+....+.+.+......-..+|+++|+||+|+.
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~  286 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL  286 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence            78999999777542   11122233444444332212347999999999985

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04112 Rab26 Rab26 subfamily

Probab=99.64  E-value=1.2e-14  Score=115.80  Aligned_cols=120  Identities=15%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.+.+.........++.+..........++  ..+.||||||....       ......++  
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--   71 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYY--   71 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHc--
Confidence            58999999999999999999987632112222222222222233444  47899999996321       11112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      .++|++++|++++.....+....++..+.+....  ..|+++|+||+|+...+
T Consensus        72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~  122 (191)
T cd04112          72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGER  122 (191)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhcc
Confidence            4899999998886533223345566666665433  36999999999985333

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.64  E-value=1.1e-14  Score=118.13  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||+|.+++... .....++.+.+.........   ...+.+|||||.....       .....++ 
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~-   71 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYI-   71 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHh-
Confidence            5899999999999999999998763 22222332323323333333   3578999999973221       1122222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~~~~~  172 (243)
                       .++|++++|++++.....+....|+..+.+.... ....|+++|+||+|+...+..
T Consensus        72 -~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v  127 (215)
T cd04109          72 -YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV  127 (215)
T ss_pred             -hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence             4899999998886543223345577777766542 222479999999999644433

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04113 Rab4 Rab4 subfamily

Probab=99.64  E-value=1.4e-14  Score=111.73  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.+++..... ...+..+..........++  ..+.+|||||....       ......++  
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--   70 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY--   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--
Confidence            589999999999999999999876322 1122222222222233334  47899999998421       11122222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..+|++++|++++..........++..++.....  ..|+++|+||+|+.+.
T Consensus        71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~  120 (161)
T cd04113          71 RGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQ  120 (161)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchh
Confidence            4899999998886543223334565555554433  3699999999998643

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04121 Rab40 Rab40 subfamily

Probab=99.64  E-value=9.1e-15  Score=116.28  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=81.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|..|+|||||+.++.+... .....+..+..........++  ..+.+|||||.....       .....++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~   76 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYS   76 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh
Confidence            468999999999999999999997642 111112222222223344455  578899999984321       1112222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        .++|++|+|++++.....+....|++.+.+...   ..|+++|+||.|+...+..+.
T Consensus        77 --~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~~  130 (189)
T cd04121          77 --RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVAT  130 (189)
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhccCCCH
Confidence              599999999998764433444678888866543   369999999999964444443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04127 Rab27A Rab27a subfamily

Probab=99.64  E-value=1.7e-14  Score=113.38  Aligned_cols=125  Identities=15%  Similarity=0.079  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------CCeEEEEEeCCCCCCCCCCcH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------AGFTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~viDTPG~~~~~~~~~  105 (243)
                      ..+||+++|.+|+|||||++++.+... .....++.+.+.......+            ....+.+|||||...      
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------   75 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------   75 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH------
Confidence            358999999999999999999997753 2222222222221111211            235799999999631      


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       .......++  .++|++++|++++..........|+..+..... ....|+++|+||+|+.+.+..+
T Consensus        76 -~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~  139 (180)
T cd04127          76 -FRSLTTAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVS  139 (180)
T ss_pred             -HHHHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccC
Confidence             111222222  589999999888653322333456666554322 1135899999999986443333

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04176 Rap2 Rap2 subgroup

Probab=99.64  E-value=1.1e-14  Score=112.52  Aligned_cols=118  Identities=19%  Similarity=0.136  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++||+++|.+|+|||||++.+++.....  ...++...........++.  .+.+|||||.........   ..+     
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---~~~-----   70 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD---LYI-----   70 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHH---HHH-----
Confidence            3799999999999999999999776322  2222222222233444554  578899999854332211   122     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++.....+....++..+..... ....|+++|+||+|+.+
T Consensus        71 -~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~  120 (163)
T cd04176          71 -KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES  120 (163)
T ss_pred             -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence             489999999888654322334556666665432 12379999999999853

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.63  E-value=1.1e-14  Score=112.34  Aligned_cols=118  Identities=16%  Similarity=0.135  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|++|+|||||+|++++..... ...+..+.........++  +..+.+|||||....       ......++ 
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~-   71 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RSLAPMYY-   71 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh-
Confidence            3799999999999999999999887432 122222211222223333  357899999997321       11111122 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++.....+....++..+......  ..|+++|+||+|+.+
T Consensus        72 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~  120 (163)
T cd01860          72 -RGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES  120 (163)
T ss_pred             -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence             4789999998876433233445666666665432  368999999999863

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.63  E-value=1.9e-14  Score=111.11  Aligned_cols=122  Identities=17%  Similarity=0.147  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|++|+|||||++++++... .....+..+...........+  ..+.+|||||...       .......++  
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~--   70 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY--   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--
Confidence            5899999999999999999998864 222222223222333344555  4788999999631       111222223  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      .++|++++|+++......+....|+..+......  ..|+++|+||+|+......+
T Consensus        71 ~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~~~  124 (164)
T smart00175       71 RGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQRQVS  124 (164)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccccCCC
Confidence            5899999998875432222233455555554322  36999999999986433333

Rab GTPases are implicated in vesicle trafficking.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=5.6e-15  Score=115.79  Aligned_cols=127  Identities=16%  Similarity=0.164  Sum_probs=91.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .-++|+++|.+|+|||+++-.+..... ......+...+........+|.  .+++|||+|+.....       .++.|+
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t-------i~~sYy   82 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT-------ITTAYY   82 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH-------HHHHHH
Confidence            458999999999999999999887653 2222222233333444455554  799999999953321       223333


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                        ++++++++|+++.+....+....|++.+.+.....  .+.++|+||+|+..++.++.+.
T Consensus        83 --rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e~  139 (207)
T KOG0078|consen   83 --RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKER  139 (207)
T ss_pred             --hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHHH
Confidence              49999999999976665566777999999987764  5999999999997666665543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.63  E-value=1e-14  Score=114.28  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=77.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|..|+|||||++.+.+....  ....++...........++  ..+.+|||||..+...       ....++ 
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~-   71 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-------MRDQYM-   71 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH-------HhHHHh-
Confidence            479999999999999999999977632  1122222122222344455  4688999999853221       111222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                       .++|++++|++++.....+....+...+.+... ....|+++|+||+|+......+.
T Consensus        72 -~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~  127 (172)
T cd04141          72 -RCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTT  127 (172)
T ss_pred             -hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCH
Confidence             488999999988754322333445555655422 12369999999999864433333

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.63  E-value=8.6e-15  Score=113.55  Aligned_cols=119  Identities=19%  Similarity=0.170  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      +|+++|.+|+|||||++++++...  ...+++++..........++.  .+.+|||||.....  .......+      .
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~------~   70 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD--TEQLERSI------R   70 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc--cchHHHHH------H
Confidence            589999999999999999987552  222222222222223344444  68899999986421  11122233      3


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      .+|++++|++++.....+....++..+..........|+++|+||+|+...
T Consensus        71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  121 (165)
T cd04146          71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY  121 (165)
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence            889999998886543223345566666654321223799999999998533

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.2e-15  Score=119.27  Aligned_cols=144  Identities=15%  Similarity=0.092  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .-+||+++|.+|+|||-|+..++.... .....++.+.+..+....++++  +.+||||+|+...+.....   +.    
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSa---YY----   84 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSA---YY----   84 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccch---hh----
Confidence            348999999999999999999887663 3333344444555555566665  7899999999644322211   22    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHcccc
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST  193 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~  193 (243)
                        +++.+.|+|+++......+.-.+||+.++.+...+  .++++|+||+||...+.++.++-..-..+...-+++.++
T Consensus        85 --rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSA  158 (222)
T KOG0087|consen   85 --RGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSA  158 (222)
T ss_pred             --cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecc
Confidence              59999999999976444567788999999988665  489999999999876666666544333333344555543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.63  E-value=1e-14  Score=130.30  Aligned_cols=124  Identities=24%  Similarity=0.353  Sum_probs=89.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH--HHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~--~~~~~~~~  115 (243)
                      .+++|+++|.+|+|||||+|+|++.....++..+++|...........+..+.+|||||+.+........  ....+...
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~  251 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK  251 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence            5699999999999999999999998866677777777776666666788899999999997654443211  11111111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+|++|+|+++.. ..+..+..++..+.+.     .+|+++|+||+|+.
T Consensus       252 ~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~  297 (435)
T PRK00093        252 AIERADVVLLVIDATE-GITEQDLRIAGLALEA-----GRALVIVVNKWDLV  297 (435)
T ss_pred             HHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence            2258899999977754 3556666655554432     26999999999986

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.63  E-value=1.3e-14  Score=112.16  Aligned_cols=117  Identities=20%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++....  ....++...........++  ..+.+|||||..+...   ..    ..++  
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~----~~~~--   69 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA---MR----DQYM--   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH---HH----HHHH--
Confidence            48999999999999999999987632  2222222222223333444  4788999999854321   11    1122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..+|++++|++++.....+....+...+...... ...|+++|+||+|+.+
T Consensus        70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~  119 (164)
T smart00173       70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES  119 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            3789999998876532222334445555544332 2369999999999864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04144 Ras2 Ras2 subfamily

Probab=99.62  E-value=1.3e-14  Score=115.35  Aligned_cols=122  Identities=17%  Similarity=0.176  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ||+++|.+|+|||||++++++...  ....+++...........++.  .+.+|||||..+...       ....++  .
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~   69 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-------LRDQWI--R   69 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHH--H
Confidence            589999999999999999997653  222222222222223334454  588999999743221       111122  4


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      ++|++|+|++++.....+....++..+...... ....|+++|+||+|+...+..+
T Consensus        70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~  125 (190)
T cd04144          70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS  125 (190)
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC
Confidence            899999998886533223345566666554321 1346999999999986433333

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.62  E-value=1.3e-14  Score=111.52  Aligned_cols=116  Identities=20%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++...  .....++...........++.  .+.+|||||......       ....++  
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------l~~~~~--   70 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM--   70 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-------HHHHHH--
Confidence            6899999999999999999998763  222222222222223344443  578899999843211       112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.....+....+...+.+.... ...|+++|+||+|+.
T Consensus        71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~  119 (162)
T cd04138          71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLA  119 (162)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            3789999998886533222333455555544322 236999999999985

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=5.1e-15  Score=128.72  Aligned_cols=133  Identities=22%  Similarity=0.268  Sum_probs=96.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+.+++|+++|++|+|||||+|+|...+...+++.+++|.+......+.+|.++.++||+|+-+.....-+.....+..-
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            34779999999999999999999999999999999999999999899999999999999999762222223332222222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHH-hcccc------cccEEEEEeCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN-FGEQI------WKRALIVLTHAQLSLP  169 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~-~~~~~------~~~~ivV~tk~D~~~~  169 (243)
                      ....+|++++|+++... .+..+....+.+... -|-.+      ..+++++.||.|+..+
T Consensus       345 ~~~~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  345 RIERADVILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHhhcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            33589999999777443 334444433333322 11112      2689999999998754

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.62  E-value=2.1e-14  Score=115.20  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||++.+++... .....++.+.+.........   ...+.+|||||......       ....++ 
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~-   71 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-------MTRVYY-   71 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh-------hHHHHh-
Confidence            5899999999999999999998753 22222222222222223333   34789999999843211       112222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       .++|++++|++++.....+....|+..+.....  .....|+++|+||+|+.+.+..+
T Consensus        72 -~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~  129 (201)
T cd04107          72 -RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD  129 (201)
T ss_pred             -CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC
Confidence             589999999888653322333455555554322  12346999999999996433333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=1.6e-14  Score=115.17  Aligned_cols=189  Identities=17%  Similarity=0.206  Sum_probs=116.0

Q ss_pred             HhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-------CCCC-eeEEEEeeeCCe--EEEEEeCCCCCC
Q 026113           30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGP-RPVMVSRSRAGF--TLNIVDTPGLIE   99 (243)
Q Consensus        30 ~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-------~~t~-~~~~~~~~~~~~--~~~viDTPG~~~   99 (243)
                      ++..+.+ -.++|++||.+|.||||++|.++...+...+..+       .++. ....+....+|.  ++.++|||||+|
T Consensus        38 ~k~mk~G-F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD  116 (336)
T KOG1547|consen   38 KKTMKTG-FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD  116 (336)
T ss_pred             HHHHhcc-CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence            3344443 5799999999999999999999977654422211       1111 112233344554  789999999997


Q ss_pred             CCCCc-----------HHHHHHHHHHH--------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEE
Q 026113          100 GGYVN-----------YHAIQLIKRFL--------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus       100 ~~~~~-----------~~~~~~~~~~~--------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      .-..+           ++...++++-+        .+...|++||+++.+...+...|..+++.+.+.      .+++-|
T Consensus       117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPV  190 (336)
T KOG1547|consen  117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPV  190 (336)
T ss_pred             ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeee
Confidence            53222           12222222222        135689999999888777888899999888887      699999


Q ss_pred             EeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccC-Ccc--cccc----------CCCccchhhhcCCCCCCCcCcccccc
Q 026113          161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW-MKK--KDIQ----------GSFVPVVLVENSGRCAKNENDEKVSQ  227 (243)
Q Consensus       161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~--~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~  227 (243)
                      +-|+|-.     ..++....+..--+++...+.. |..  ++..          +..||+.++.......-|+  +.+  
T Consensus       191 IakaDtl-----TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG--~~v--  261 (336)
T KOG1547|consen  191 IAKADTL-----TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNG--RRV--  261 (336)
T ss_pred             Eeecccc-----cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEcC--eEe--
Confidence            9999865     3443333323333344444433 221  1110          2578888886655444443  345  


Q ss_pred             CCCCCcc
Q 026113          228 LPDNRIQ  234 (243)
Q Consensus       228 lp~~~~w  234 (243)
                      |.....|
T Consensus       262 lGRktrW  268 (336)
T KOG1547|consen  262 LGRKTRW  268 (336)
T ss_pred             ecccccc
Confidence            7777888

>cd04117 Rab15 Rab15 subfamily

Probab=99.62  E-value=1.6e-14  Score=111.80  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ++|+++|.+|+|||||++.+++... .....+..+...........+  ..+.+|||||......       ....++  
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~--   70 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYY--   70 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHh--
Confidence            5899999999999999999997763 222222222222223334444  4688999999743211       112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      ..+|++++|++++.....+....|++.+......  ..|+++|+||.|+...+...
T Consensus        71 ~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~  124 (161)
T cd04117          71 RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQKRQVG  124 (161)
T ss_pred             cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCC
Confidence            4899999999987644334445666666654332  36999999999986444333

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK11058 GTPase HflX; Provisional

Probab=99.62  E-value=1.1e-14  Score=129.06  Aligned_cols=123  Identities=18%  Similarity=0.176  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-hc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~-~~  117 (243)
                      .+|+++|.+|+|||||+|+|++.+.+ +.+.+.+|.++......+.+. ++.+|||||+...  ......+.+...+ ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~  274 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQET  274 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHh
Confidence            58999999999999999999998864 556666677766656655554 8999999999532  1222222222222 23


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++|+|++.+.....+....+...+......  ..|+++|+||+|+.
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~  322 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDML  322 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCC
Confidence            5899999997775432222222233334433222  36999999999985

>cd04110 Rab35 Rab35 subfamily

Probab=99.62  E-value=3.1e-14  Score=114.09  Aligned_cols=121  Identities=17%  Similarity=0.110  Sum_probs=75.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||++++++.... ....++.+...........+  ..+.+|||||.....   .    ....++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---~----~~~~~~   76 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR---T----ITSTYY   76 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---H----HHHHHh
Confidence            4689999999999999999999987632 22222222222222333344  468899999974321   1    111222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                        .++|++++|+++......+....++..+....+   ..|+++|+||+|+.+...
T Consensus        77 --~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~~  127 (199)
T cd04110          77 --RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPERKV  127 (199)
T ss_pred             --CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccc
Confidence              478999999887543322333456666555432   268999999999864333

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=9.7e-15  Score=128.70  Aligned_cols=124  Identities=17%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      .|+++|.+|||||||+|+|++... .++.++.+|..+......+. +..+.++||||+.+...........+.+.+  ..
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er  236 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ER  236 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH--hh
Confidence            899999999999999999998874 45677777777776666666 789999999999754332211111111111  37


Q ss_pred             CcEEEEEEeCCCc---ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++++++|++++..   ...+....+.+.+......-..+|.++|+||+|+.
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~  287 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP  287 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence            8999999877532   12233344555555542222347999999999973

>cd04131 Rnd Rnd subfamily

Probab=99.62  E-value=2.4e-14  Score=112.77  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++.+.+... .. .+.++...........++  ..+.+|||||......        ++.. .
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f-~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~--------~~~~-~   69 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCY-PE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN--------VRPL-C   69 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcC-CC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh--------cchh-h
Confidence            37999999999999999999998753 22 222221111222233444  4789999999843321        1111 1


Q ss_pred             cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..++|++|+|++++... +......|+..+.+..+   ..|+++|+||+|+.
T Consensus        70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~  118 (178)
T cd04131          70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR  118 (178)
T ss_pred             cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence            15899999999986543 32223567777776543   26999999999985

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.61  E-value=3.5e-14  Score=112.24  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++.+++... . ..+.++...........++  ..+.+|||+|.....        .++.. 
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f-~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~--------~~~~~-   72 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------NVRPL-   72 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCC-C-CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhH--------hhhhh-
Confidence            468999999999999999999997753 2 2222221112222233444  479999999984321        22221 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...++|++++|++++... +......|++.+.+..+   ..|+++|+||+|+.
T Consensus        73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~  122 (182)
T cd04172          73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR  122 (182)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence            125899999999986543 32223567777776543   36999999999985

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04124 RabL2 RabL2 subfamily

Probab=99.61  E-value=1.9e-14  Score=111.34  Aligned_cols=115  Identities=12%  Similarity=0.100  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.+++... .....+.............++  ..+.+|||||......       ....++  
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~--   70 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYY--   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHh--
Confidence            5899999999999999999997753 211111111111122223333  4688999999843211       112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.....+....|+..+.+...   ..|+++|+||+|+.
T Consensus        71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~  117 (161)
T cd04124          71 HKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD  117 (161)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence            489999999887643222334566666665432   36999999999984

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PTZ00369 Ras-like protein; Provisional

Probab=99.61  E-value=1.8e-14  Score=114.51  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++++++....  ....++...........++  ..+.+|||||..+.....       ..++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~-------~~~~   74 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMR-------DQYM   74 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhH-------HHHh
Confidence            4699999999999999999999987632  1222222122222223344  468899999986543221       1122


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                        .++|++++|++++.....+....+...+...... ...|+++|+||+|+..
T Consensus        75 --~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~  124 (189)
T PTZ00369         75 --RTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDS  124 (189)
T ss_pred             --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence              4899999998886543223345566666554332 2369999999999853

>cd04154 Arl2 Arl2 subfamily

Probab=99.61  E-value=1.1e-14  Score=114.03  Aligned_cols=125  Identities=18%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      ++++...+ ..+++|+++|.+|+|||||++++.+.....  ..+  |..........++..+.+|||||....       
T Consensus         4 ~~~~~~~~-~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~--~~~--t~g~~~~~~~~~~~~l~l~D~~G~~~~-------   71 (173)
T cd04154           4 IIRKQKLK-EREMRILILGLDNAGKTTILKKLLGEDIDT--ISP--TLGFQIKTLEYEGYKLNIWDVGGQKTL-------   71 (173)
T ss_pred             hhhhhhcC-CCccEEEEECCCCCCHHHHHHHHccCCCCC--cCC--ccccceEEEEECCEEEEEEECCCCHHH-------
Confidence            34444433 357999999999999999999999875321  111  211222334456788999999998421       


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ......++  .++|++++|++.+..........++..+.... .....|+++|+||+|+.
T Consensus        72 ~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~  128 (173)
T cd04154          72 RPYWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLP  128 (173)
T ss_pred             HHHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccc
Confidence            11222233  58999999988764321122223333332211 11237999999999985

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.60  E-value=2.7e-14  Score=111.62  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ||+++|.+|+|||||++++++... .....+..+...........+  ..+.+|||||......       ....++  .
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~   71 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-------IASTYY--R   71 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-------hHHHHh--c
Confidence            799999999999999999998763 222222222222222333344  4799999999842211       111122  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ++|++++|++++.....+....|++.+.+..... ..|+++|+||+|+.+.
T Consensus        72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~  121 (170)
T cd04108          72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSP  121 (170)
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCcc
Confidence            8999999988865322334456666654432211 1479999999998533

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.60  E-value=1.4e-14  Score=113.04  Aligned_cols=123  Identities=12%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++|+++|.+|+|||||++++++... .....+..+...........+  ..+.+|||||..+..   .   .....++ 
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~---~~~~~~~-   73 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---K---SMVQHYY-   73 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---H---hhHHHhh-
Confidence            47999999999999999999997653 211112222222222333444  579999999974221   0   1112222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                       .++|++++|++++.....+....|+..+...... ...|+++|+||+|+.....
T Consensus        74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~  126 (170)
T cd04115          74 -RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQ  126 (170)
T ss_pred             -cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhcC
Confidence             5899999998886543333345566555554321 2369999999999864333

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd00157 Rho Rho (Ras homology) family

Probab=99.60  E-value=6.9e-15  Score=114.38  Aligned_cols=116  Identities=20%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++++.... ....+. ............  ...+.+|||||+.+.......       ++  
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~-------~~--   69 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPT-VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL-------SY--   69 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc-eeeeeEEEEEECCEEEEEEEEeCCCcccccccchh-------hc--
Confidence            58999999999999999999988741 111121 111112222233  347999999998654222211       11  


Q ss_pred             CCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       118 ~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..+|++++|++++.. ++......++..+.....   ..|+++|+||+|+.+.
T Consensus        70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          70 PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD  119 (171)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence            478999999888652 244444556666655433   3799999999998643

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04177 RSR1 RSR1 subgroup

Probab=99.60  E-value=2.8e-14  Score=111.07  Aligned_cols=121  Identities=19%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++||+++|.+|+||||+++++.+...  .....++...........++  ..+.+|||||..+.....+   ..+     
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~-----   70 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE---LYI-----   70 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhH---HHH-----
Confidence            47899999999999999999997763  22222222222222233333  5789999999864432211   112     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                       .+++++++|+++++....+....+.+.+...... ...|+++|+||.|+.+.+.
T Consensus        71 -~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~  123 (168)
T cd04177          71 -KSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQ  123 (168)
T ss_pred             -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCc
Confidence             3789999998886543333345566666654432 2379999999999864433

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04171 SelB SelB subfamily

Probab=99.60  E-value=2.2e-14  Score=110.62  Aligned_cols=113  Identities=22%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccc--cCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .|+++|.+|+|||||+|+|++......  ...+..|.........+. +..+.+|||||+.+       ....+..++  
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~--   72 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA--   72 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh--
Confidence            689999999999999999998642111  112223333333334444 77899999999832       112222222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.. ........+..+. ..+.   +|+++|+||+|+.
T Consensus        73 ~~ad~ii~V~d~~~~-~~~~~~~~~~~~~-~~~~---~~~ilv~NK~Dl~  117 (164)
T cd04171          73 GGIDLVLLVVAADEG-IMPQTREHLEILE-LLGI---KRGLVVLTKADLV  117 (164)
T ss_pred             hcCCEEEEEEECCCC-ccHhHHHHHHHHH-HhCC---CcEEEEEECcccc
Confidence            489999999887542 2222333333332 2221   4899999999985

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.60  E-value=1.3e-14  Score=113.95  Aligned_cols=114  Identities=23%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.+.+...  ...+.++...........++  ..+.+|||||..+......       .++  
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--   70 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP-------LSY--   70 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhh-------hhc--
Confidence            6899999999999999999997663  22222222121222234455  4688999999964322111       111  


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++... +......|+..+....+   ..|+++|+||+|+.
T Consensus        71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~  118 (175)
T cd01874          71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR  118 (175)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence            4899999998886533 32323346666655432   36999999999985

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03118 Rab family protein; Provisional

Probab=99.60  E-value=3.1e-14  Score=115.17  Aligned_cols=123  Identities=18%  Similarity=0.185  Sum_probs=74.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++++++....  ...+..+..........++  ..+.+|||||.......   .    ..++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---~----~~~~   83 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL---T----SSYY   83 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH---H----HHHH
Confidence            4689999999999999999999987642  1122222222222333444  47899999998533211   1    1222


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                        .++|++++|++++... +......|...+... ......|+++|+||+|+......
T Consensus        84 --~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~i  138 (211)
T PLN03118         84 --RNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESERDV  138 (211)
T ss_pred             --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccCcc
Confidence              4889999998876432 222222233333322 22223589999999998644333

>cd04123 Rab21 Rab21 subfamily

Probab=99.60  E-value=7e-14  Score=107.49  Aligned_cols=117  Identities=19%  Similarity=0.150  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++..... ...+..+...........+  ..+.+|||||......       ....++  
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~--   70 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY--   70 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--
Confidence            589999999999999999999876432 2222222222222233333  3689999999632211       111122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..+|++++|+++++....+....+++.+.+....  ..|+++|+||+|+..
T Consensus        71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~  119 (162)
T cd04123          71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER  119 (162)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            4799999998876543223334556666655443  369999999999863

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03110 Rab GTPase; Provisional

Probab=99.60  E-value=5.4e-14  Score=114.20  Aligned_cols=123  Identities=15%  Similarity=0.152  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++.+++.... ....++.+...........+  ..+.+|||||...       .......++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~   82 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY   82 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh
Confidence            4589999999999999999999987642 22222222222233334444  4799999999732       111222222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                        .+++++++|++++.....+....|+..+......  ..|+++|+||+|+......
T Consensus        83 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~  135 (216)
T PLN03110         83 --RGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHLRSV  135 (216)
T ss_pred             --CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccccCC
Confidence              5899999998886543333445666666665433  3699999999998544333

>cd00154 Rab Rab family

Probab=99.60  E-value=3.7e-14  Score=108.21  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|.+++...... ..+..+..........  ....+.+|||||...       .......++  
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--   70 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY--   70 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--
Confidence            5899999999999999999998875332 1122222222222233  346789999999832       111222223  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.....+....++..+......  ..|+++|+||+|+.
T Consensus        71 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  118 (159)
T cd00154          71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE  118 (159)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence            4799999998876432222334455555554322  36999999999985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.60  E-value=6e-14  Score=114.80  Aligned_cols=116  Identities=15%  Similarity=0.117  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|..|+|||||++.+++... .....|+... ........++  ..+.||||||....        +.+... 
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~-~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~~-   80 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFE-NYTAGLETEEQRVELSLWDTSGSPYY--------DNVRPL-   80 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceee-eeEEEEEECCEEEEEEEEeCCCchhh--------HHHHHH-
Confidence            568999999999999999999997753 2222222221 1222233344  47999999998432        122211 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...++|++++|++++... +......|+..+.+..+   ..|+++|+||+|+.
T Consensus        81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~  130 (232)
T cd04174          81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLR  130 (232)
T ss_pred             HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence            115999999999986543 32223567777776543   26999999999985

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04125 RabA_like RabA-like subfamily

Probab=99.59  E-value=6.4e-14  Score=111.15  Aligned_cols=119  Identities=20%  Similarity=0.133  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++++.... ....++.+.+........++  ..+.+|||||......       ....++  
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~--   70 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY--   70 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--
Confidence            58999999999999999999987642 11122222222222333444  4678999999742211       111122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      .++|++++|++++..........|+..+....+..  .|+++|+||+|+.+..
T Consensus        71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~  121 (188)
T cd04125          71 RGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNNK  121 (188)
T ss_pred             cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcccc
Confidence            58999999988865332233344666666554332  6899999999986433

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04133 Rop_like Rop subfamily

Probab=99.59  E-value=4.5e-14  Score=111.02  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+..+..... .....++.. .........++  ..+.+|||+|..........   .+      
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~-~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~---~~------   70 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVF-DNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL---SY------   70 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcce-eeeEEEEEECCEEEEEEEEECCCCccccccchh---hc------
Confidence            5899999999999999999997663 222222221 22222233444  47899999998654333221   22      


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .++|++|+|++++... +......|+..+.+..+   ..|+++|+||+|+.+
T Consensus        71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~  119 (176)
T cd04133          71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRD  119 (176)
T ss_pred             CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhcc
Confidence            4899999999987543 33333567777765432   369999999999964

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.59  E-value=2.2e-14  Score=135.00  Aligned_cols=120  Identities=20%  Similarity=0.261  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~~~~  118 (243)
                      .+|+++|.+|+|||||+|+|++.....+...++.|.+.......+.+..+.+|||||+..... ......+....++  .
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~  353 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--S  353 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--H
Confidence            689999999999999999999988767777788887777777788899999999999864321 1122222222233  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+|++|+|++... .++..+..+.+.++..     .+|+++|+||+|+.
T Consensus       354 ~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~  396 (712)
T PRK09518        354 LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ  396 (712)
T ss_pred             hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence            8999999977653 3566676777666542     37999999999985

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.59  E-value=6.7e-14  Score=112.27  Aligned_cols=120  Identities=16%  Similarity=0.122  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-------CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-------AGFTLNIVDTPGLIEGGYVNYHAIQLIK  112 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~viDTPG~~~~~~~~~~~~~~~~  112 (243)
                      +||+++|.+|+|||||++.+.+... .....++.+.........+       ....+.+|||+|....        ..++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l~   71 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KSTR   71 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHHH
Confidence            5899999999999999999998763 2222222221111111222       1247899999999432        1222


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-----------------ccccccEEEEEeCCCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-----------------EQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-----------------~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..+ ..++|++|+|++++.....+....|+..+....+                 .....|+++|+||+|+.+.
T Consensus        72 ~~~-yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          72 AVF-YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHH-hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            211 1589999999998764433445577777765321                 1123699999999998644

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=99.59  E-value=4.9e-14  Score=109.69  Aligned_cols=122  Identities=17%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++.... ....++.+.........+.+.  .+.+|||||.....       .....++  
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--   70 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY--   70 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--
Confidence            58999999999999999999988642 222222222222223344443  56799999974221       1112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~~~~~  171 (243)
                      .++|++|+|++++.....+....+...+...+..  ....|+++|+||+|+.+++.
T Consensus        71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  126 (172)
T cd01862          71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ  126 (172)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc
Confidence            5899999998876432112223444444443321  11369999999999974333

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01893 Miro1 Miro1 subfamily

Probab=99.59  E-value=2.2e-14  Score=111.54  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++.+....  ...+... .........  .+..+.+|||||..+..   ..    +..++  
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~----~~~~~--   68 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR---AN----LAAEI--   68 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh---HH----Hhhhc--
Confidence            48999999999999999999987632  2222221 111121222  44578999999985321   11    12222  


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..+|++++|++++... +......|+..+.....   ..|+++|+||+|+.+.
T Consensus        69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~~  118 (166)
T cd01893          69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDG  118 (166)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcccc
Confidence            4899999998876432 22222346666665432   3699999999999643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.59  E-value=8.6e-14  Score=107.60  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +||+++|.+|+|||||++++.+.. .+.....++............   ....+.+|||||...       .......++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~   73 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW   73 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh
Confidence            589999999999999999998642 222222222222222222222   336899999999721       111222233


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                        ..+|++++|++++.....+....|++.+....   ...|+++|+||+|+.+.
T Consensus        74 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          74 --ESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK  122 (164)
T ss_pred             --CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence              58999999988864322223345555555442   23699999999998643

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.59  E-value=7.3e-14  Score=110.59  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=74.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+..+|+++|.+|+||||++|.+.+......  .+  |...........+.++.+|||||....       ......++ 
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~-   82 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH--QP--TQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF-   82 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc--CC--ccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence            3579999999999999999999998764322  11  223334445567889999999998421       11222333 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++.............+..+.+... ....|+++|+||+|+.
T Consensus        83 -~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~  131 (184)
T smart00178       83 -PEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAP  131 (184)
T ss_pred             -CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence             589999999776432111112222322222111 1236999999999984

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.59  E-value=3.3e-14  Score=133.88  Aligned_cols=124  Identities=16%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~  115 (243)
                      ...+|+++|.+|+|||||+|+|++.....++..+++|.+.......+++.++.+|||||+.......  .+....++...
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~  528 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA  528 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence            3589999999999999999999999865667777788777666677888899999999986432221  12233332222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+|++++|++... ..+..+..++..+...     .+|+++|+||+|+.
T Consensus       529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~  574 (712)
T PRK09518        529 AIERSELALFLFDASQ-PISEQDLKVMSMAVDA-----GRALVLVFNKWDLM  574 (712)
T ss_pred             HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence            2258999999977754 3555555555544331     36999999999986

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.59  E-value=6.2e-14  Score=115.98  Aligned_cols=125  Identities=21%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|..|+|||||++.+++... . ..+.++..+........++  ..+.+|||||..+..        .++.. ..
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~-~~   69 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRF-E-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRL-SI   69 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCC-C-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHH-Hh
Confidence            4899999999999999999997653 2 2222222222233334455  478899999985321        12221 11


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-------ccccccEEEEEeCCCCCCCCCCCHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-------EQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-------~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..+|++|+|++++.....+....+++.+.....       .....|+++|+||+|+...+....+
T Consensus        70 ~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~  134 (247)
T cd04143          70 LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRD  134 (247)
T ss_pred             ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHH
Confidence            488999999998764322334556666654311       1234799999999998643444443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.59  E-value=3.2e-14  Score=112.50  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      +.++|+++|.+|+|||||++++++....  ...++.+.........   ..+..+.+|||||....   .    .....+
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~----~~~~~~   72 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---R----PLWKSY   72 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---H----HHHHHH
Confidence            4689999999999999999999877632  2233222222222222   24578999999997321   1    111222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +  .++|++++|++.+.....+....++..+.+.... ...|+++|+||+|+.
T Consensus        73 ~--~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~  122 (183)
T cd04152          73 T--RCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLP  122 (183)
T ss_pred             h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence            2  4899999997765432112223344444433222 237999999999984

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.58  E-value=3.8e-14  Score=126.62  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=84.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .-..|+|||.+|||||||+|+|++... .+++++.+|..+........+.++.++||||+.+........-..+.+++  
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi--  234 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--  234 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence            346899999999999999999998874 46777888888877777788889999999999754322221111111122  


Q ss_pred             CCCcEEEEEEeCCCc---c-cChhHHHHHHHHHHHhc---------ccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVY---R-VDNLDKQITRAITDNFG---------EQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~---~-~~~~~~~~l~~l~~~~~---------~~~~~~~ivV~tk~D~~  167 (243)
                      ..++++++|+++...   + ..+....+.+.|.....         .-..+|+++|+||+|+.
T Consensus       235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~  297 (500)
T PRK12296        235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP  297 (500)
T ss_pred             HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence            478999999766421   1 11112222333333221         11247999999999985

>cd01875 RhoG RhoG subfamily

Probab=99.58  E-value=4.7e-14  Score=112.36  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=74.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|..|+|||||++.+..... .....++.. .........++  ..+.+|||||.....        .++...
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~e~~~--------~l~~~~   71 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVF-DNYSAQTAVDGRTVSLNLWDTAGQEEYD--------RLRTLS   71 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceE-eeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhhh
Confidence            358999999999999999999997653 222222211 11111223444  478999999994332        222211


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..++|++++|++++... +......|+..+.....   ..|+++|+||.|+.
T Consensus        72 -~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~  120 (191)
T cd01875          72 -YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLR  120 (191)
T ss_pred             -ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEeChhhh
Confidence             15899999999986543 33222346655554332   36999999999985

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.58  E-value=3.6e-14  Score=110.45  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+++++.... .....++...........  .....+.+|||||........+.   .+      
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~------   70 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDG---YY------   70 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHH---Hh------
Confidence            5899999999999999999986552 111112111111111112  23457999999998644322221   11      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.....+.-..++..+....+   ..|+++|+||+|+.
T Consensus        71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~  117 (166)
T cd00877          71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK  117 (166)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence            489999999888653322333456666666544   37999999999985

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04126 Rab20 Rab20 subfamily

Probab=99.58  E-value=4.6e-14  Score=114.70  Aligned_cols=114  Identities=14%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +||+++|.+|+|||||++.+++....  ...+  |.........+....+.+|||||........       ..++  .+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~-------~~~~--~~   67 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLG-------SMYC--RG   67 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC--CCCC--ccceEEEEEEeeEEEEEEEeCCCcccchhhH-------HHHh--cc
Confidence            58999999999999999999987742  2222  2222222333456689999999985432211       1122  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +|++|+|++++.....+....++..+.+....  ..|+++|+||+|+..
T Consensus        68 ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~  114 (220)
T cd04126          68 AAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE  114 (220)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence            99999998886533222233344344443332  258999999999864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04118 Rab24 Rab24 subfamily

Probab=99.58  E-value=2.4e-14  Score=113.95  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t-~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||++++++... ....+.++. ..........++.  .+.+|||||........       ..++ 
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~-   71 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS-------RIYY-   71 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------Hhhc-
Confidence            5899999999999999999998763 222222221 1111223444554  56799999984332111       1111 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++.....+....|++.+.....   ..|+++|+||+|+.
T Consensus        72 -~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  118 (193)
T cd04118          72 -RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLI  118 (193)
T ss_pred             -CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccc
Confidence             489999999887643222223456666655321   36999999999985

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.58  E-value=7.2e-15  Score=109.96  Aligned_cols=149  Identities=16%  Similarity=0.064  Sum_probs=97.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||+-++..... ........+.+.......++|.  ++.+|||+|+...+...+.   ++    
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~f-d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS---yy----   81 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTF-DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS---YY----   81 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhccc-CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh---Hh----
Confidence            359999999999999999999887653 2222112344444555566654  7999999999777666654   23    


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW  194 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  194 (243)
                        +++.++|+|+++.... +... ..|++.+.-... +...-.++|+||+|....+.++-++-++-..+.-.-+|+++++
T Consensus        82 --RgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Yst-n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAk  157 (209)
T KOG0080|consen   82 --RGAQGIILVYDVTSRDTFVKL-DIWLKELDLYST-NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAK  157 (209)
T ss_pred             --ccCceeEEEEEccchhhHHhH-HHHHHHHHhhcC-CccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchh
Confidence              4999999999987533 3333 456666554433 2224578999999975455666666555444444445666665


Q ss_pred             Cccc
Q 026113          195 MKKK  198 (243)
Q Consensus       195 ~~~~  198 (243)
                      ....
T Consensus       158 t~~~  161 (209)
T KOG0080|consen  158 TREN  161 (209)
T ss_pred             hhcc
Confidence            5443

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.58  E-value=2.4e-14  Score=120.27  Aligned_cols=123  Identities=19%  Similarity=0.346  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCC------CCCe--eEEEEeeeCC--eEEEEEeCCCCCCCCCCcH--
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQS------EGPR--PVMVSRSRAG--FTLNIVDTPGLIEGGYVNY--  105 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~-~~~------~t~~--~~~~~~~~~~--~~~~viDTPG~~~~~~~~~--  105 (243)
                      .++|+|+|.+|+|||||+|+|++........ .+.      .+..  ........++  .++.|+||||+++.-....  
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            5899999999999999999999987544321 110      1111  1112222333  3799999999987533221  


Q ss_pred             -HHHHHHH----HHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 -HAIQLIK----RFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 -~~~~~~~----~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .+..++.    .++.           +...|++||+++.+..++.+.|...++.+.+.      .++|.|+.|+|..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l  155 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence             1222222    2221           34689999998877666888888888777765      6999999999986

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.58  E-value=9.3e-15  Score=107.19  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCCCeeE--EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPV--MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~-~~~~~~~t~~~~--~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ||+++|..|+|||||+++|++..... ....+..+....  ..........+.+||++|..........   .+      
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~------   71 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQF---FL------   71 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHH---HH------
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccc---hh------
Confidence            79999999999999999999887531 111111111122  1222223335899999998433222211   12      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      ..+|++++|+++......+.-..++.++...-+.....|+++|+||.|
T Consensus        72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            378999999888654322222334455555443233479999999997

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04149 Arf6 Arf6 subfamily

Probab=99.58  E-value=6.6e-14  Score=109.24  Aligned_cols=113  Identities=15%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.++|+++|.+|+|||||++++.....  ....|+.+..  .......+..+.+|||||....       ......++  
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~--~~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--   74 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVGFN--VETVTYKNVKFNVWDVGGQDKI-------RPLWRHYY--   74 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCC--ccccCCcccc--eEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence            568999999999999999999986543  2222322222  2233456789999999998421       11112222  


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|+++.... +.+    ..+++.+....  ....|+++|+||+|+.
T Consensus        75 ~~a~~ii~v~D~t~~~s~~~----~~~~~~~~~~~~~~~~~piilv~NK~Dl~  123 (168)
T cd04149          75 TGTQGLIFVVDSADRDRIDE----ARQELHRIINDREMRDALLLVFANKQDLP  123 (168)
T ss_pred             ccCCEEEEEEeCCchhhHHH----HHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence            4899999998875432 222    22233333221  1236999999999985

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.58  E-value=5.5e-14  Score=114.34  Aligned_cols=114  Identities=15%  Similarity=0.108  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.+++... .....|+.. .........++  ..+.+|||+|.....        .++.. ..
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~-~~~~~~~~~~~~~v~L~iwDt~G~e~~~--------~l~~~-~~   70 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVF-ENYTASFEIDKRRIELNMWDTSGSSYYD--------NVRPL-AY   70 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccc-cceEEEEEECCEEEEEEEEeCCCcHHHH--------HHhHH-hc
Confidence            7999999999999999999997763 222222222 22222333444  478899999984221        22211 12


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +++|++|+|++++... +......|...+.....   ..|+++|+||+|+.
T Consensus        71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~---~~piiLVgnK~DL~  118 (222)
T cd04173          71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCP---NAKVVLVGCKLDMR  118 (222)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEECcccc
Confidence            6999999999886533 33333445544444332   26999999999985

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04116 Rab9 Rab9 subfamily

Probab=99.58  E-value=1.3e-13  Score=107.44  Aligned_cols=120  Identities=21%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++++++... .....+..+..........++  ..+.+|||||....       ......++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~   75 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-------RSLRTPFY   75 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhHHHHh
Confidence            468999999999999999999997763 222222222222222333444  46789999997321       11112222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++.....+....+...+......  ....|+++|+||+|+.
T Consensus        76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          76 --RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             --cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence              5889999998887543223334455555444321  1236999999999985

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04148 RGK RGK subfamily

Probab=99.58  E-value=5.2e-14  Score=114.67  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t-~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||++.+++.... ...+.++. .+.......+  ....+.+|||||..       .   .+...+.
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-------~---~~~~~~~   69 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-------M---WTEDSCM   69 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------h---HHHhHHh
Confidence            58999999999999999999866532 11222211 1222222333  34579999999995       1   1111111


Q ss_pred             cC-CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~-~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       . ++|++++|++++.....+....++..+..... ....|+++|+||+|+.+.+..+
T Consensus        70 -~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~  125 (221)
T cd04148          70 -QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVS  125 (221)
T ss_pred             -hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceec
Confidence             3 89999999888654322333456665555321 1247999999999986444333

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01863 Rab18 Rab18 subfamily

Probab=99.58  E-value=5.1e-14  Score=108.54  Aligned_cols=117  Identities=17%  Similarity=0.107  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++..... ...+..+.+.........+  ..+.+|||||......       ....++  
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~--   70 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYY--   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHh--
Confidence            589999999999999999999876422 1222222222222223333  5789999999743211       112222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus        71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~  119 (161)
T cd01863          71 RGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE  119 (161)
T ss_pred             CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence            489999999887643322233446666655543 2336899999999986

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.57  E-value=5.1e-14  Score=109.21  Aligned_cols=117  Identities=13%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccc---cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTV---STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +|+++|.+|+|||||+|.+++......   ......|.........+++..+.+|||||+.+..       .....++  
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--   71 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYY--   71 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--
Confidence            589999999999999999987532110   0111122222233455678899999999985321       1122222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++............++..+.+... ....|+++|+||+|+.
T Consensus        72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~  120 (167)
T cd04160          72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLP  120 (167)
T ss_pred             CCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence            589999999776432111112223332222111 1236999999999985

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04158 ARD1 ARD1 subfamily

Probab=99.57  E-value=9.3e-14  Score=108.38  Aligned_cols=113  Identities=9%  Similarity=0.018  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      ||+++|.+|+|||||++++.+...  ....+  |...........+..+.+|||||..+..   ..+...+      .++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~---~~~~~~~------~~a   67 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLR---PLWKHYY------LNT   67 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcc---hHHHHHh------ccC
Confidence            689999999999999999998742  22222  2222223445678899999999985322   1111222      489


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++.+.....+....++..+..... ....|+++|+||+|+.
T Consensus        68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  113 (169)
T cd04158          68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVA  113 (169)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence            999999887543211222333333332211 1126999999999985

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04111 Rab39 Rab39 subfamily

Probab=99.57  E-value=8e-14  Score=112.79  Aligned_cols=122  Identities=15%  Similarity=0.132  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+||+++|.+|+|||||++.+++...... ..++.+.+........ .+  ..+.+|||||.....       .....++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~   73 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY   73 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh
Confidence            47999999999999999999998764222 1222222222222222 23  478999999974221       1112222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                        .++|++++|++++.....+....++..+.+..... ..++++|+||+|+.+...
T Consensus        74 --~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~~~~  126 (211)
T cd04111          74 --RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPH-RPVFILVGHKCDLESQRQ  126 (211)
T ss_pred             --cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEccccccccc
Confidence              58999999988865432233445666665554322 257899999999864333

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.57  E-value=2.2e-14  Score=114.06  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .||+++|.+|+|||||++.+++...... ..++... ........++  ..+.+|||||..........       +  .
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~-~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~-------~--~   69 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFE-NYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL-------S--Y   69 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCc-cCCccee-eeEEEEEECCEEEEEEEEECCCChhccccccc-------c--c
Confidence            3899999999999999999998763221 1122111 1112223334  57899999998543222111       1  1


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .++|++++|++++... +......|+..+.....   ..|+++|+||+|+..
T Consensus        70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~  118 (189)
T cd04134          70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE  118 (189)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            4899999999987643 33333456767765432   369999999999863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.57  E-value=2.1e-13  Score=108.57  Aligned_cols=121  Identities=22%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~  113 (243)
                      ...+|+++|.+|+|||||+|++++.. .......+++|.......  . +.++.+|||||+.......   +.....+..
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            56899999999999999999999875 333333333333222221  2 4689999999986543322   122222333


Q ss_pred             HHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++. ....+++++|++.+. ..+..+..+.+++..     ...|+++|+||+|+.
T Consensus       100 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~  148 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKE-----YGIPVLIVLTKADKL  148 (196)
T ss_pred             HHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHH-----cCCcEEEEEECcccC
Confidence            332 235678888865543 244444444544432     236899999999985

>PRK04213 GTP-binding protein; Provisional

Probab=99.57  E-value=8.2e-14  Score=111.65  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH----HHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH----AIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~----~~~~~~~  113 (243)
                      ..++|+++|.+|+|||||+|++++... .+...++.|.....  ..+.  ++.+|||||++......+.    ....+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            468999999999999999999998763 44444444433322  2222  6899999998654433322    2222222


Q ss_pred             HHh--cCCCcEEEEEEeCCCcc-c---------ChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          114 FLL--NKTIDVLLYVDRLDVYR-V---------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~--~~~~~~il~v~~~d~~~-~---------~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++.  ...++++++|++.+... +         ...+..++..+..     ...|+++|+||+|+.
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~  143 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKI  143 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence            322  24578888886653210 1         1112233333332     136999999999985

>cd04128 Spg1 Spg1p

Probab=99.57  E-value=1.6e-13  Score=108.44  Aligned_cols=115  Identities=20%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|..|+|||||++.+++... .....++.+..........++  ..+.+|||+|.....        .+... ..
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~--------~~~~~-~~   70 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI--------NMLPL-VC   70 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH--------HhhHH-HC
Confidence            5899999999999999999987753 222223222222222344455  478999999984321        11111 12


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.....+....|++.+.+.....  .| ++|+||+|+.
T Consensus        71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~  117 (182)
T cd04128          71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF  117 (182)
T ss_pred             cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence            58999999988865433333446666666543322  35 6899999985

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.56  E-value=2.3e-14  Score=105.89  Aligned_cols=123  Identities=20%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ++.+++|.+|+|||||+-.+.... +..+.....+.+.......++|  ..++||||+|.        +.++.|...+. 
T Consensus         9 fkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrtitstyy-   78 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTITSTYY-   78 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH--------HHHHHHHHHHc-
Confidence            567899999999999998877664 3333222233333344444544  47999999999        44444433221 


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      .++|++++|+++.+......-++||+.++..+..   .|-++|+||.|....+....+
T Consensus        79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV~t~  133 (198)
T KOG0079|consen   79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVVDTE  133 (198)
T ss_pred             cCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceeeehH
Confidence            6999999999997655556788999999998873   689999999998644444333

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.56  E-value=7.1e-14  Score=110.64  Aligned_cols=115  Identities=19%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||++++++.... ....++.... ........   ...+.+|||||..+..        .++.. .
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~-~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~-~   69 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFEN-YVTNIQGPNGKIIELALWDTAGQEEYD--------RLRPL-S   69 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeee-eEEEEEecCCcEEEEEEEECCCchhHH--------HHHHH-h
Confidence            58999999999999999999987632 2221211111 11122222   3478999999974221        12211 1


Q ss_pred             cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..++|++++|++++... +......|+..+... ..  ..|+++|+||+|+.+
T Consensus        70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~  119 (187)
T cd04132          70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRK  119 (187)
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhh
Confidence            25899999998886532 222223355545433 22  369999999999853

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.56  E-value=1.1e-13  Score=108.68  Aligned_cols=116  Identities=13%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.+||+++|..|+|||||++.+.....  ....|+.+.  ........+..+.+|||||....       ......++ 
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~--~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~-   78 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGF--NVETVTYKNISFTVWDVGGQDKI-------RPLWRHYY-   78 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCcccc--ceEEEEECCEEEEEEECCCChhh-------HHHHHHHh-
Confidence            3579999999999999999999965442  122232222  22234456789999999998432       11122222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHH-HHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAIT-DNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~-~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|+++......+....++..+. ....  ...|+++|+||+|+.
T Consensus        79 -~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~  127 (175)
T smart00177       79 -TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL--RDAVILVFANKQDLP  127 (175)
T ss_pred             -CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcc
Confidence             58999999988754321122223333322 1111  136999999999985

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.56  E-value=2.4e-14  Score=111.84  Aligned_cols=112  Identities=18%  Similarity=0.155  Sum_probs=72.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      |+++|.+|+|||||++++++... .....++ ...........++.  .+.+|||||..+......        . ...+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~-~~~~   69 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPT-VFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP--------L-SYPD   69 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCC-CCCCCCc-EEeeeeEEEEECCEEEEEEEEECCCCcccchhch--------h-hcCC
Confidence            68999999999999999998763 2221121 11112222334443  689999999854332111        1 1158


Q ss_pred             CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|++++|++++... +......|+..+.+..+   ..|+++|+||+|+.
T Consensus        70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  115 (174)
T smart00174       70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLR  115 (174)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhh
Confidence            99999998886533 33333356666665443   37999999999985

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04157 Arl6 Arl6 subfamily

Probab=99.56  E-value=5.6e-14  Score=108.28  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      +|+++|.+|+|||||++.+.+.........++.+  .........+..+.+|||||..+..       .....++  .++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~   69 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--FNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNI   69 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--cceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccC
Confidence            5899999999999999999986532211122222  1222234567889999999984321       1122222  489


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhc-ccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++............++..+..... .....|+++|+||+|+.
T Consensus        70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~  117 (162)
T cd04157          70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP  117 (162)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence            999999776542211222334444433211 11247999999999985

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00876 Ras Ras family

Probab=99.56  E-value=1.1e-13  Score=106.26  Aligned_cols=116  Identities=20%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ||+++|.+|+|||||++++++..  ......+++...........+  ..+.+|||||..+..       .....++  .
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~   69 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--R   69 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--h
Confidence            68999999999999999999876  233333333333333344443  478999999984311       1111222  4


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .+|++++|++++.....+....+...+....+. ...|+++|+||+|+..
T Consensus        70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  118 (160)
T cd00876          70 QGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN  118 (160)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence            789999998876533223334444455544431 2379999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.56  E-value=1.3e-13  Score=106.31  Aligned_cols=117  Identities=18%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++++...  .....+++..........+  +..+.+|||||..+...   .    ...++  
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~----~~~~~--   69 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA---I----RDNYH--   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH---H----HHHHh--
Confidence            5899999999999999999997763  2222222222222222333  35799999999853321   1    11122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .+.+++++|++++.......-..+...+..... ....|+++|+||+|+..
T Consensus        70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          70 RSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            478999999877643322223444444444322 22379999999999863

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN03108 Rab family protein; Provisional

Probab=99.56  E-value=2.8e-13  Score=109.48  Aligned_cols=126  Identities=14%  Similarity=0.099  Sum_probs=77.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||+|.+++...... ..++.+.+.........+  ..+.+|||||.....       .....++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~   76 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYY   76 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh
Confidence            358999999999999999999998764222 222222222222334444  368899999974211       1111222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        .++|++++|+++......+....|+..+......  ..|+++|+||+|+......+.+
T Consensus        77 --~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~  132 (210)
T PLN03108         77 --RGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTE  132 (210)
T ss_pred             --ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHH
Confidence              4899999998876533223334555555544332  3699999999998644444433

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.56  E-value=8.8e-14  Score=109.16  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+.++++... . ..+.++...........++  ..+.+|||||..+.....       ..++  
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--   70 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY--   70 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-C-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------hhhc--
Confidence            6999999999999999999997653 2 2222222122122233444  478899999984332111       1112  


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++|+|++++... +......|+..+....+   ..|+++|+||+|+.
T Consensus        71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~  118 (174)
T cd01871          71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  118 (174)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence            4899999999886532 32322346666655432   36999999999985

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.56  E-value=6.9e-14  Score=113.82  Aligned_cols=118  Identities=10%  Similarity=0.059  Sum_probs=76.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+++++.... .....++.+..........  ....+.+|||||........       ..+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~   82 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGY   82 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCC-CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH
Confidence            4679999999999999999999876652 2222222222222222222  23589999999985432111       112


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +  .++|++|+|++++.....+....|++.+.+...   ..|+++|+||+|+.
T Consensus        83 ~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~  130 (219)
T PLN03071         83 Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (219)
T ss_pred             c--ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence            2  489999999888754333344567777766532   36999999999985

>cd04114 Rab30 Rab30 subfamily

Probab=99.55  E-value=1.1e-13  Score=107.43  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .-.+|+++|.+|+|||||++++++.... ....++.+.........+.+  ..+.+|||||....       ......++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~   77 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYY   77 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh
Confidence            3589999999999999999999866532 12222222223333344555  46889999997422       11112233


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                        ..+|++++|+++......+....++..+......+  .|+++|+||+|+.+.
T Consensus        78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~  127 (169)
T cd04114          78 --RSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER  127 (169)
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence              48999999987754221122235555555544332  589999999998643

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.55  E-value=1.5e-13  Score=112.78  Aligned_cols=87  Identities=22%  Similarity=0.296  Sum_probs=62.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      +|+++|.+|+|||||+|+|+|... .+..++.+|..+......+.+..+++|||||+.+...........+..+  ...+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccC
Confidence            789999999999999999999874 4556666676666666678899999999999865432222211111122  2589


Q ss_pred             cEEEEEEeCC
Q 026113          121 DVLLYVDRLD  130 (243)
Q Consensus       121 ~~il~v~~~d  130 (243)
                      |++++|++..
T Consensus        79 d~il~V~D~t   88 (233)
T cd01896          79 DLILMVLDAT   88 (233)
T ss_pred             CEEEEEecCC
Confidence            9999996653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.3e-13  Score=105.78  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=88.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+|.+++|.+|+|||+|+-.++.....++.+ .+.+.+.......+++  .+++||||+|+..       ..+..+.|. 
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-------frsv~~syY-   76 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-------FRSVTRSYY-   76 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH-------HHHHHHHHh-
Confidence            4899999999999999999999887543333 2223333333344555  4799999999932       222333344 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                       .++-+.|+|++++..........||..+++....+  --+++++||+|+...+.++-++
T Consensus        77 -r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EE  133 (216)
T KOG0098|consen   77 -RGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEE  133 (216)
T ss_pred             -ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHH
Confidence             58999999999987555567778888888875443  3689999999997666655443

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.55  E-value=1.1e-13  Score=106.87  Aligned_cols=123  Identities=23%  Similarity=0.223  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ||+++|..|+|||||++.+.+... .....++...+........++.  .+.+|||+|....   . .....   ++  .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~-~~~~~---~~--~   70 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---D-SLRDI---FY--R   70 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---H-HHHHH---HH--T
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccccc---c-ccccc---cc--c
Confidence            799999999999999999997763 2222232223444444455554  6999999997322   1 11111   11  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ++|++++|++++.....+.-..|+..+....+..  .|+++|+||.|+.+.+..+.+
T Consensus        71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~  125 (162)
T PF00071_consen   71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVE  125 (162)
T ss_dssp             TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHH
T ss_pred             cccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhh
Confidence            8999999999876544444557888888776632  599999999998754455544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd00880 Era_like Era (E

Probab=99.55  E-value=9.2e-14  Score=105.66  Aligned_cols=117  Identities=26%  Similarity=0.352  Sum_probs=74.7

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcE
Q 026113           44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV  122 (243)
Q Consensus        44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (243)
                      ++|.+|+||||++|++++.........++.+........... +..+.+|||||+.+...........+..++  ..+|+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~   78 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADL   78 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCE
Confidence            589999999999999999875544444444444444444433 678999999999876654432222333333  48999


Q ss_pred             EEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       123 il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +++|++..... ......   .+.....  ...|+++|+||+|+..
T Consensus        79 il~v~~~~~~~-~~~~~~---~~~~~~~--~~~~~ivv~nK~D~~~  118 (163)
T cd00880          79 ILFVVDADLRA-DEEEEK---LLELLRE--RGKPVLLVLNKIDLLP  118 (163)
T ss_pred             EEEEEeCCCCC-CHHHHH---HHHHHHh--cCCeEEEEEEccccCC
Confidence            99997765422 222222   1222111  2369999999999863

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.55  E-value=1.5e-13  Score=107.04  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      +|+++|.+|+|||||++.+.+..  .....++  ...........+..+.+|||||...       .......++  .++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~~t--~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~a   67 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI--PKKVAPT--VGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYY--AEA   67 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC--CccccCc--ccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHH--cCC
Confidence            48999999999999999999762  2222222  2222334556788999999999732       112223333  589


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++.......+....++..+..... ....|+++|+||+|+.
T Consensus        68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~  113 (167)
T cd04161          68 HGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKK  113 (167)
T ss_pred             CEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence            999999776543211222334444433211 1236999999999985

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.55  E-value=1.6e-13  Score=108.53  Aligned_cols=116  Identities=13%  Similarity=0.186  Sum_probs=71.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++.+||+++|.+|+|||||++.+......  ...|+.  ..........+..+.+|||||....       ......++ 
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~--~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~-   82 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTI--GFNVETVEYKNLKFTMWDVGGQDKL-------RPLWRHYY-   82 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCcc--ccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh-
Confidence            35799999999999999999999755421  222222  2222334457789999999998421       11112222 


Q ss_pred             cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++|+|++++... +......+.+.+....  ....|+++|+||.|+.
T Consensus        83 -~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~  131 (182)
T PTZ00133         83 -QNTNGLIFVVDSNDRERIGDAREELERMLSEDE--LRDAVLLVFANKQDLP  131 (182)
T ss_pred             -cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh--hcCCCEEEEEeCCCCC
Confidence             5899999998875432 3222222222222111  1236899999999984

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.55  E-value=8.4e-14  Score=126.01  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=95.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~  116 (243)
                      +..+++++|.+|+||||+.|+++|.+. .+++.|+.|.+.........+..+.++|+||.++-... .+|  ...++++.
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~ll   78 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFLL   78 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHHh
Confidence            356799999999999999999999996 78999999999888888999999999999999865432 222  24466777


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      ...+|+|+-|  +|.+.+...-.-+++.+.      ...|+++++|.+|..+.....
T Consensus        79 ~~~~D~ivnV--vDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~  127 (653)
T COG0370          79 EGKPDLIVNV--VDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIR  127 (653)
T ss_pred             cCCCCEEEEE--cccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCc
Confidence            7899999999  665444333333333222      236999999999987555443

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.55  E-value=3.1e-13  Score=106.77  Aligned_cols=115  Identities=14%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++.+||+++|..|+|||||++.+.....  ....|+.+  .........+..+.+|||||...       .......++ 
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~pt~g--~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~-   82 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG--FNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF-   82 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC--ccccCCcc--eeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence            4579999999999999999999986543  22222222  22233456778999999999732       111222233 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc--ccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|+++....   .-.....++...+...  ...|+++|+||.|+.
T Consensus        83 -~~a~~iI~V~D~s~~~---s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~  131 (181)
T PLN00223         83 -QNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
T ss_pred             -ccCCEEEEEEeCCcHH---HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence             5899999997775422   1112222333332211  136999999999985

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.55  E-value=1.2e-13  Score=106.13  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      ||+++|.+|+|||||++++++....  ...+  +.........+.+..+.+|||||....   ..    ....++  .++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---~~----~~~~~~--~~~   67 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---RP----LWKHYY--ENT   67 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC--CCCC--CcCcceEEEEECCEEEEEEECCCChhh---HH----HHHHHh--ccC
Confidence            6899999999999999999988721  1111  222223344566789999999998532   11    112222  478


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|+++...........++..+..... ....|+++|+||+|+.
T Consensus        68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~  113 (158)
T cd00878          68 NGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLP  113 (158)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence            999999877643211222233333333221 1247999999999986

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.54  E-value=6.6e-14  Score=109.55  Aligned_cols=114  Identities=21%  Similarity=0.187  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +|++++|.+|+|||||++++++...  ...+.++...........++  ..+.+|||||.........       .+  .
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~   69 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP-------LC--Y   69 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccc-------cc--c
Confidence            5899999999999999999987652  22233332222222334444  4788999999854322211       11  1


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|+++.... +......|+..+.....   ..|+++|+||+|+.
T Consensus        70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  117 (173)
T cd04130          70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLR  117 (173)
T ss_pred             CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhc
Confidence            4899999998886533 33333456666654322   36999999999985

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.54  E-value=1.6e-13  Score=106.38  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .|+++|.+|+|||||+|+|++..... ...+..|..........   .+..+.+|||||....       ......+.  
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~--   71 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA--   71 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--
Confidence            48999999999999999999876432 22222332222233333   3678999999998421       11111122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++++|++++.. ........+..+..     ...|+++|+||+|+.
T Consensus        72 ~~~d~il~v~d~~~~-~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~  115 (168)
T cd01887          72 SLTDIAILVVAADDG-VMPQTIEAIKLAKA-----ANVPFIVALNKIDKP  115 (168)
T ss_pred             hhcCEEEEEEECCCC-ccHHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence            489999999777542 22333334444332     236999999999985

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=1.7e-14  Score=125.55  Aligned_cols=144  Identities=22%  Similarity=0.264  Sum_probs=105.4

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      .+.++...+...-+++++|.+++||||++|.++..++ .+.+++.+|..-......+.-..++++||||+.|....+...
T Consensus       157 hl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~  235 (620)
T KOG1490|consen  157 HLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI  235 (620)
T ss_pred             HHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence            3444555666778999999999999999999887775 677888887766666666666789999999998766555443


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcc--cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ++...-.....-..+|||++++...+  .-+.+.++.+.++.+|..   +++|+|+||+|...+++.+.+
T Consensus       236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~  302 (620)
T KOG1490|consen  236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQK  302 (620)
T ss_pred             HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHH
Confidence            33222111112346799998887665  234567888889999976   799999999999877665544

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.54  E-value=4.9e-14  Score=121.38  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCc-----ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKA-----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI  111 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~  111 (243)
                      ..+++|+|+|.+|+|||||||+|.|-.-     +.++. ..+|..+..+.... --++.+||.||.+.+....+++++.+
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            3689999999999999999999987421     11111 12344444444322 12599999999987665555544433


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .    -...|++|++  .+ .++++.+..+.+.+++. |    +++++|-||+|.
T Consensus       111 ~----~~~yD~fiii--~s-~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~  153 (376)
T PF05049_consen  111 K----FYRYDFFIII--SS-ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDS  153 (376)
T ss_dssp             T----GGG-SEEEEE--ES-SS--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred             c----ccccCEEEEE--eC-CCCchhhHHHHHHHHHc-C----CcEEEEEecccc
Confidence            2    2478988888  33 37889999888888876 3    689999999975

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.54  E-value=2.8e-13  Score=106.18  Aligned_cols=116  Identities=11%  Similarity=0.056  Sum_probs=72.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.++|+++|.+|+|||||++.+++.....  ..+  |.........+.+..+.+|||||....       ......++  
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--   80 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--TSP--TIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYY--   80 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC--cCC--ccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHh--
Confidence            46899999999999999999998765322  222  222223345567889999999998421       11122222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++.+...........+..+.+..+ ....|+++|+||+|+.
T Consensus        81 ~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~  129 (174)
T cd04153          81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLK  129 (174)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence            489999999776542111112222333322111 1236999999999985

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04135 Tc10 TC10 subfamily

Probab=99.54  E-value=6.8e-14  Score=109.30  Aligned_cols=114  Identities=20%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++.+....  ....++...........++.  .+.+|||||..+.....+.         ..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~   69 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SY   69 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cC
Confidence            58999999999999999999987632  11212211122223334443  5789999998654322211         11


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++... +......|+..+... .  ...|+++|+||+|+.
T Consensus        70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~  117 (174)
T cd04135          70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLR  117 (174)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhh
Confidence            5889999998876533 333334566666554 2  236999999999985

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.54  E-value=1.5e-13  Score=106.14  Aligned_cols=113  Identities=13%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +||+++|.+|+|||||++.+.....  ....|+.+..  ..........+.+|||||+...       ......++  .+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~   67 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFN--VETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN   67 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcc--eEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cC
Confidence            4899999999999999999965542  2222322222  2234456788999999998421       11222222  58


Q ss_pred             CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|++++|++.+... +.+. ..++..+..... ....|+++|+||+|+.
T Consensus        68 ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~  114 (159)
T cd04150          68 TQGLIFVVDSNDRERIGEA-REELQRMLNEDE-LRDAVLLVFANKQDLP  114 (159)
T ss_pred             CCEEEEEEeCCCHHHHHHH-HHHHHHHHhcHH-hcCCCEEEEEECCCCC
Confidence            99999998875432 2222 222222221111 1126999999999985

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00879 Sar1 Sar1 subfamily

Probab=99.54  E-value=2e-13  Score=108.31  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++.+|+++|.+|+|||||++.+.+....  ...+  |.........+.+.++.+|||||..+.       ......++ 
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~--T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~-   84 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QHVP--TLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF-   84 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--ccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence            46799999999999999999999987642  1112  222333455667889999999997321       11222233 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++............++..+.+.. .....|+++|+||+|+.
T Consensus        85 -~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~  133 (190)
T cd00879          85 -PEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLP  133 (190)
T ss_pred             -ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence             48899999977653211112223333332211 11237999999999985

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.53  E-value=2.9e-13  Score=108.36  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ||+++|.+|+|||||++++++....  .....+..........+.+  ..+.+|||||..+...        ++.. ...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~-~~~   69 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA--------MRKL-SIQ   69 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH--------HHHH-Hhh
Confidence            6899999999999999999987632  2222222222222344455  5789999999853311        1111 114


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ++|++++|+++......+....++..+.+.... ...|+++|+||+|+..
T Consensus        70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  118 (198)
T cd04147          70 NSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE  118 (198)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence            899999998875432223334455555554332 2379999999999853

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.53  E-value=3.1e-13  Score=102.62  Aligned_cols=117  Identities=19%  Similarity=0.279  Sum_probs=73.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++||+++|.+|+|||||+|++++.. +.....+..+..........++  ..+.+|||||..+....   .....     
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~~~~~-----   71 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI---RRLYY-----   71 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH---HHHHH-----
Confidence            3799999999999999999999988 4555555555554444455666  67899999996433211   11111     


Q ss_pred             cCCCcEEEEEEeCCCc--ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..++.++.++++...  ........+...+......  ..|+++|+||+|+.
T Consensus        72 -~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  121 (161)
T TIGR00231        72 -RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR  121 (161)
T ss_pred             -hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence             245666666544221  1222233444444444332  36999999999986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01892 Miro2 Miro2 subfamily

Probab=99.53  E-value=5e-13  Score=104.33  Aligned_cols=117  Identities=17%  Similarity=0.075  Sum_probs=72.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +-+||+++|.+|+|||||++++++.........++............++  ..+.+|||+|..........   .+    
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~---~~----   75 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDA---EL----   75 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchh---hh----
Confidence            5689999999999999999999987742022222222222223334445  57889999998654322221   12    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .++|++|+|++++...   ......+++.. +......|+++|+||+|+.
T Consensus        76 --~~~d~~llv~d~~~~~---s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~  121 (169)
T cd01892          76 --AACDVACLVYDSSDPK---SFSYCAEVYKK-YFMLGEIPCLFVAAKADLD  121 (169)
T ss_pred             --hcCCEEEEEEeCCCHH---HHHHHHHHHHH-hccCCCCeEEEEEEccccc
Confidence              4899999997775421   11112222322 2111247999999999985

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.53  E-value=2.3e-13  Score=128.16  Aligned_cols=123  Identities=17%  Similarity=0.242  Sum_probs=86.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HH-HHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HA-IQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~-~~~~~~~  114 (243)
                      +..+|+++|.+|+|||||+|+++|.+. .+++.++.|.+.......+.+.++.+|||||+++......  .. .+..+.+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            357999999999999999999999875 5777788887776666777888999999999986532110  11 1122344


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      +....+|++++|++.+  .... ...+...+.+.     ..|+++|+||+|+.+.
T Consensus        81 l~~~~aD~vI~VvDat--~ler-~l~l~~ql~e~-----giPvIvVlNK~Dl~~~  127 (772)
T PRK09554         81 ILSGDADLLINVVDAS--NLER-NLYLTLQLLEL-----GIPCIVALNMLDIAEK  127 (772)
T ss_pred             HhccCCCEEEEEecCC--cchh-hHHHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence            4456899999995554  3322 22333333332     3799999999998633

>cd04155 Arl3 Arl3 subfamily

Probab=99.52  E-value=4.5e-13  Score=104.55  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=72.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||++.+.+......  .+  +...........+..+.+|||||...       .......++ 
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~--~~--t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~-   79 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI--TP--TQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF-   79 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc--CC--CCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence            3579999999999999999999998753221  11  22222334456788999999999732       112222332 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|+++...........++..+.+... ....|+++++||+|+.
T Consensus        80 -~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~  128 (173)
T cd04155          80 -ENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLA  128 (173)
T ss_pred             -cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCc
Confidence             488999999776542211112222222222111 1236999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.52  E-value=3.2e-13  Score=104.88  Aligned_cols=112  Identities=17%  Similarity=0.169  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      .|+++|.+|+|||||++.+.+... .....|+.+..  .......+..+.+|||||.....   ..+...+      .++
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~---~~~~~~~------~~a   68 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR---KYWKRYL------SGS   68 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--eEEEeeCCeEEEEEECCCCcchh---HHHHHHH------hhC
Confidence            379999999999999999998753 22222222221  23344567889999999985432   1122222      489


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++..........+.++..+...   ....|+++|+||.|+.
T Consensus        69 d~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~  112 (164)
T cd04162          69 QGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLP  112 (164)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCc
Confidence            9999997765422112223333333322   2347999999999985

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=5.6e-13  Score=98.71  Aligned_cols=121  Identities=17%  Similarity=0.214  Sum_probs=84.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIK-RFL  115 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~-~~~  115 (243)
                      -+||+++|..|+|||.|+..++..- ++++.....+.+......+++|  .++++|||+|+..        ++.+. .|.
T Consensus         7 lfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqer--------frsitqsyy   77 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER--------FRSITQSYY   77 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHH--------HHHHHHHHh
Confidence            3799999999999999999988553 4444444444444444555555  4799999999943        33332 222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                        +.+|++++|+++.-....+-.-+|+..+.+.....  .-.|+|+||.|+.+.++.
T Consensus        78 --rsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~drrev  130 (213)
T KOG0095|consen   78 --RSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADRREV  130 (213)
T ss_pred             --hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhhhhh
Confidence              48999999988864333344567888888876554  367999999998755443

>cd04151 Arl1 Arl1 subfamily

Probab=99.51  E-value=2e-13  Score=105.09  Aligned_cols=112  Identities=12%  Similarity=0.174  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      ||+++|.+|+|||||++++......  ...++  ...........+..+.+|||||..+.       ....+.++  .++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~   67 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV--TTIPT--IGFNVETVTYKNLKFQVWDLGGQTSI-------RPYWRCYY--SNT   67 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc--CcCCc--cCcCeEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--cCC
Confidence            6899999999999999999766532  22222  11222334456789999999998422       11122233  489


Q ss_pred             cEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++.+... +......+...+... . ....|+++|+||+|+.
T Consensus        68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~  113 (158)
T cd04151          68 DAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMP  113 (158)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCC
Confidence            9999998775422 211122222222221 1 1236999999999985

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.51  E-value=7.4e-13  Score=105.64  Aligned_cols=113  Identities=14%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCC---------------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN  104 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~  104 (243)
                      .+|+++|.+|+|||||+|++++.........               .+.+...........+..+.+|||||+.+.    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~----   78 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF----   78 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence            4899999999999999999996321111110               112222233345567789999999998532    


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ......++  .++|++++|+++... .......++..+..   .  ..|+++|+||+|+.
T Consensus        79 ---~~~~~~~~--~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~  130 (194)
T cd01891          79 ---GGEVERVL--SMVDGVLLLVDASEG-PMPQTRFVLKKALE---L--GLKPIVVINKIDRP  130 (194)
T ss_pred             ---HHHHHHHH--HhcCEEEEEEECCCC-ccHHHHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence               11222233  489999999777542 22222333333222   1  36899999999985

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.51  E-value=1.7e-13  Score=112.94  Aligned_cols=127  Identities=21%  Similarity=0.268  Sum_probs=92.8

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH-----H
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI-----Q  109 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~-----~  109 (243)
                      +..+.++|+++|.+|+|||||.|.+.|..++.++....+|............-++.++||||+...........     +
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            34567999999999999999999999999999988888887777777777788999999999986654433211     1


Q ss_pred             HHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          110 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       110 ~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..++  ....+|+|++++++.+.+ ....-+.++.+.+..    ..|-++|+||.|...
T Consensus       148 ~~~~--a~q~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys----~ips~lvmnkid~~k  199 (379)
T KOG1423|consen  148 NPRD--AAQNADCVVVVVDASATR-TPLHPRVLHMLEEYS----KIPSILVMNKIDKLK  199 (379)
T ss_pred             CHHH--HHhhCCEEEEEEeccCCc-CccChHHHHHHHHHh----cCCceeeccchhcch
Confidence            1122  225899999998776433 233344454444432    259999999999863

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.51  E-value=4.5e-13  Score=105.67  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~  105 (243)
                      +|+++|.+|+|||||+|++++........               ....+...........+..+.+|||||+.+.     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence            58999999999999999999876432110               1112222223344556778999999998532     


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ......++  ..+|++++|++.... .......++..+..     ...|+++|+||+|+.
T Consensus        76 --~~~~~~~~--~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~  127 (189)
T cd00881          76 --SSEVIRGL--SVSDGAILVVDANEG-VQPQTREHLRIARE-----GGLPIIVAINKIDRV  127 (189)
T ss_pred             --HHHHHHHH--HhcCEEEEEEECCCC-CcHHHHHHHHHHHH-----CCCCeEEEEECCCCc
Confidence              11222222  389999999776532 23334444444433     237999999999986

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.51  E-value=9.4e-14  Score=112.15  Aligned_cols=113  Identities=15%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCCeEEE
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAGFTLN   90 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~   90 (243)
                      ||+++|.+|+|||||+++|++..-....                              .....|.........+.+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999865322110                              0022333444445567888999


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        91 viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|||||+.+       ....+...+  ..+|++|+|++.... ...........+ ...+.   .++|+|+||+|+.
T Consensus        81 liDTpG~~~-------~~~~~~~~~--~~ad~~llVvD~~~~-~~~~~~~~~~~~-~~~~~---~~iIvviNK~D~~  143 (208)
T cd04166          81 IADTPGHEQ-------YTRNMVTGA--STADLAILLVDARKG-VLEQTRRHSYIL-SLLGI---RHVVVAVNKMDLV  143 (208)
T ss_pred             EEECCcHHH-------HHHHHHHhh--hhCCEEEEEEECCCC-ccHhHHHHHHHH-HHcCC---CcEEEEEEchhcc
Confidence            999999732       111222222  489999999776532 333333333322 22331   4688899999985

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.51  E-value=2.8e-13  Score=104.29  Aligned_cols=112  Identities=20%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +|+++|.+|+|||||+|.+.+.....  ..++..  ........ .+..+.+|||||....       ......++  .+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~t~~--~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~--~~   67 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIPTVG--FNVEMLQLEKHLSLTVWDVGGQEKM-------RTVWKCYL--EN   67 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc--ccCccC--cceEEEEeCCceEEEEEECCCCHhH-------HHHHHHHh--cc
Confidence            58999999999999999999887432  222221  11122222 3468999999998421       11122222  47


Q ss_pred             CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|++++|++..... +... ..++..+.+... ....|+++|+||+|+.
T Consensus        68 ~~~iv~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~  114 (160)
T cd04156          68 TDGLVYVVDSSDEARLDES-QKELKHILKNEH-IKGVPVVLLANKQDLP  114 (160)
T ss_pred             CCEEEEEEECCcHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECcccc
Confidence            89999997765422 2222 222322222111 1237999999999984

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.51  E-value=2.2e-13  Score=106.51  Aligned_cols=114  Identities=15%  Similarity=0.156  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .||+++|.+|+|||||++.+++... .....++. ..........++  ..+.+|||||..+......       .+  .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~--~   70 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------LS--Y   70 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcc-ccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------cc--c
Confidence            5899999999999999999998763 21111221 111122333444  3689999999854322211       11  1


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++... +......++..+.+..+   ..|+++|+||+|+.
T Consensus        71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  118 (175)
T cd01870          71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR  118 (175)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence            5889999998887532 22222345555554322   36999999999985

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.51  E-value=4.7e-13  Score=105.23  Aligned_cols=119  Identities=22%  Similarity=0.197  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .||+++|.+|+|||||++++++... .....+ ++...........+  ..+.+|||||..+....       ...++  
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~--   70 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQDEYSIL-------PQKYS--   70 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-ccccCc-chhhhEEEEEEECCEEEEEEEEECCChHhhHHH-------HHHHH--
Confidence            6899999999999999999997763 222222 22222222333443  46789999998532111       11122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      ..+|++++|++++.....+....+...+....+. ...|+++|+||+|+...+
T Consensus        71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~  122 (180)
T cd04137          71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQR  122 (180)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhcC
Confidence            4789999998876533223334444444444332 236999999999986433

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00023 GTP-binding protein; Provisional

Probab=99.51  E-value=4.8e-13  Score=113.17  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=78.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---------------CeEEEEEeCCCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---------------GFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~viDTPG~~~~~~  102 (243)
                      ..+||+++|..|+|||||++.+.+... .....++.+.........+.               ...+.||||+|..... 
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-   97 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSS-IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-   97 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCc-ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh-
Confidence            569999999999999999999997753 22222222222222222221               2469999999985332 


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc----------cccccEEEEEeCCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE----------QIWKRALIVLTHAQLSL  168 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~----------~~~~~~ivV~tk~D~~~  168 (243)
                             .+...+ ..+++++|+|++++.....+....|++.+......          ....|++||+||+|+.+
T Consensus        98 -------sL~~~y-yr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         98 -------DCRSLF-YSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             -------hhhHHh-ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence                   222211 15899999999987644334456777777765320          11258999999999964

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.50  E-value=7.4e-13  Score=102.30  Aligned_cols=110  Identities=17%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.++.... . ...++. ..........++  ..+.+|||+|..+     .   ...      
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f-~-~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~---~~~------   63 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSY-V-QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----A---QFA------   63 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCC-C-CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----h---hHH------
Confidence            5899999999999999999886642 1 112221 112223345566  4689999999942     1   112      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++++|++++.....+....+++.+...... ...|+++|+||.|+.
T Consensus        64 ~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~  112 (158)
T cd04103          64 SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAIS  112 (158)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence            3789999999987644333335677777665421 236999999999984

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.49  E-value=9.8e-13  Score=105.81  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      +|+++|.+|+|||||++.+.+....  ...++.+.........  ..+..+.+|||||....   ...    +..++  .
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~--~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---~~~----~~~~~--~   70 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYR--STVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---RDK----LLETL--K   70 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CccCcEeecceEEEeecCCCCceEEEEECCCCHHH---HHH----HHHHH--h
Confidence            6899999999999999999987532  1222221111111111  23678999999998532   122    22222  2


Q ss_pred             CC-cEEEEEEeCCCcccChhHHHHHHHHHHHh----cccccccEEEEEeCCCCC
Q 026113          119 TI-DVLLYVDRLDVYRVDNLDKQITRAITDNF----GEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~-~~il~v~~~d~~~~~~~~~~~l~~l~~~~----~~~~~~~~ivV~tk~D~~  167 (243)
                      ++ +++++|++....  ........+++...+    ......|+++|.||+|+.
T Consensus        71 ~~~~~vV~VvD~~~~--~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~  122 (203)
T cd04105          71 NSAKGIVFVVDSATF--QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF  122 (203)
T ss_pred             ccCCEEEEEEECccc--hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence            55 999999776532  122222222222221    111247999999999986

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.48  E-value=2.4e-13  Score=108.44  Aligned_cols=147  Identities=20%  Similarity=0.162  Sum_probs=94.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ...||+++|.+|+|||+|+..+++...  +..+.++..+........++.  .+.|+||+|+.+.....+   .++    
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~---~~~----   72 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRD---LYI----   72 (196)
T ss_pred             CceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHH---Hhh----
Confidence            468999999999999999999988873  344444443444444444444  688999999644322211   122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM  195 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  195 (243)
                        ...|++++|+++++....+....+.+.+.+..+.. +.|+++|+||+|+...+.++.++-..-.......+++.+.+.
T Consensus        73 --~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~  149 (196)
T KOG0395|consen   73 --RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKL  149 (196)
T ss_pred             --ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccC
Confidence              47899999999987544455566666665544433 369999999999976566666653322122222245555444


Q ss_pred             c
Q 026113          196 K  196 (243)
Q Consensus       196 ~  196 (243)
                      +
T Consensus       150 ~  150 (196)
T KOG0395|consen  150 N  150 (196)
T ss_pred             C
Confidence            3

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.48  E-value=1.6e-12  Score=109.98  Aligned_cols=125  Identities=21%  Similarity=0.345  Sum_probs=84.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc---CCCC----CCCeeEEE--EeeeCCe--EEEEEeCCCCCCCCCCcH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---TFQS----EGPRPVMV--SRSRAGF--TLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~---~~~~----~t~~~~~~--~~~~~~~--~~~viDTPG~~~~~~~~~  105 (243)
                      .-+++|+++|.+|.||||++|+|++.......   +..+    .+......  ...-+|.  .+.|+||||++|.-....
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            46899999999999999999999998533221   1111    11111111  2222343  799999999997533211


Q ss_pred             ---HHHHHH----HHHH------------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          106 ---HAIQLI----KRFL------------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       106 ---~~~~~~----~~~~------------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                         -+..++    ..|+            .+..+|++||+++.....+.+.|..+++.+.+.      .++|-|+.|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence               112222    1222            235789999998887777889999988888876      699999999998


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       175 l  175 (373)
T COG5019         175 L  175 (373)
T ss_pred             C
Confidence            7

>cd01889 SelB_euk SelB subfamily

Probab=99.48  E-value=9.3e-13  Score=104.91  Aligned_cols=113  Identities=19%  Similarity=0.178  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeee--------------CCeEEEEEeCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSR--------------AGFTLNIVDTPGLIE   99 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~------~~~~~~~~~~t~~~~~~~~~~--------------~~~~~~viDTPG~~~   99 (243)
                      ++|+++|.+|+|||||++++++..      .......+..|.........+              .+..+.+|||||+. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            489999999999999999999731      111111122333322222222              26689999999983 


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                            ...+.+..  ....+|++++|++.... ........+.. ....    ..|+++|+||+|+.
T Consensus        80 ------~~~~~~~~--~~~~~d~vi~VvD~~~~-~~~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~  133 (192)
T cd01889          80 ------SLIRTIIG--GAQIIDLMLLVVDATKG-IQTQTAECLVI-GEIL----CKKLIVVLNKIDLI  133 (192)
T ss_pred             ------HHHHHHHH--HHhhCCEEEEEEECCCC-ccHHHHHHHHH-HHHc----CCCEEEEEECcccC
Confidence                  11112211  12478999999776431 22223222322 2222    25999999999985

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.48  E-value=9.6e-13  Score=100.40  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCc
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID  121 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~  121 (243)
                      |+++|.+|+|||||+|.+.+... .....++.+.  ........+..+.+|||||...       .......++  ..+|
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~--~~~d   69 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGF--NMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYC--RGVN   69 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCc--ceEEEEECCEEEEEEECCCCHh-------HHHHHHHHH--hcCC
Confidence            78999999999999999998863 2222222222  2223345567899999999732       112222333  4889


Q ss_pred             EEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       122 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++++|+++...........++..+..... ....|+++|+||+|+.
T Consensus        70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~  114 (159)
T cd04159          70 AIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLP  114 (159)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence            99999776542111111222222222111 1236999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.47  E-value=2.4e-12  Score=99.21  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL  116 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~~~  116 (243)
                      .|+++|.+|+|||||+|.|++... ...+..+..+.....  .... ..+.+|||||+.+.....   +.....+..++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999995432 223333333332222  2222 389999999987653321   122233334443


Q ss_pred             -cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 -NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 -~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ....++++++++.+.. .........+++...     ..|+++|+||+|+.
T Consensus        78 ~~~~~~~~~~v~d~~~~-~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~  123 (170)
T cd01876          78 NRENLKGVVLLIDSRHG-PTEIDLEMLDWLEEL-----GIPFLVVLTKADKL  123 (170)
T ss_pred             hChhhhEEEEEEEcCcC-CCHhHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence             2357888888666532 334445555555543     26999999999985

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.47  E-value=3.9e-13  Score=104.55  Aligned_cols=113  Identities=22%  Similarity=0.325  Sum_probs=69.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEE----------------------------------------
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS----------------------------------------   81 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~----------------------------------------   81 (243)
                      |+++|..++|||||+|+|+|..+.+.+..+.+........                                        
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            7899999999999999999998655444332222110000                                        


Q ss_pred             ---------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHH
Q 026113           82 ---------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT  146 (243)
Q Consensus        82 ---------------~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~  146 (243)
                                     .......+.++||||+.+......+   .+.+++  +.+|++|+|.+.+. .....+...+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~  154 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQML  154 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHh
Confidence                           0011224899999999764443332   334444  68999999977764 24444555444444


Q ss_pred             HHhcccccccEEEEEeCC
Q 026113          147 DNFGEQIWKRALIVLTHA  164 (243)
Q Consensus       147 ~~~~~~~~~~~ivV~tk~  164 (243)
                      ....    ..+++|+||+
T Consensus       155 ~~~~----~~~i~V~nk~  168 (168)
T PF00350_consen  155 DPDK----SRTIFVLNKA  168 (168)
T ss_dssp             TTTC----SSEEEEEE-G
T ss_pred             cCCC----CeEEEEEcCC
Confidence            3322    4699999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=8.9e-13  Score=97.42  Aligned_cols=148  Identities=14%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-e-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-S-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-~-~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+.+||||++-+.++... ...-....+.+...... . -...++++|||+|+..        .+.+... .
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSF-t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiTTa-y   90 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTITTA-Y   90 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhcccc-ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHHHH-H
Confidence            47999999999999999999998863 22111112222211111 1 1235899999999953        2222211 1


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCCc
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK  196 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  196 (243)
                      .++++++|+++++.+.........|.-.+....-.+  .++|+|.||||+.+++..+.+.-..-..+--.++.+.++..+
T Consensus        91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N  168 (193)
T KOG0093|consen   91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN  168 (193)
T ss_pred             hhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence            259999999988865433344455555555443223  489999999999766555555433222222234555555544


Q ss_pred             cc
Q 026113          197 KK  198 (243)
Q Consensus       197 ~~  198 (243)
                      .+
T Consensus       169 in  170 (193)
T KOG0093|consen  169 IN  170 (193)
T ss_pred             cc
Confidence            43

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.4e-12  Score=109.73  Aligned_cols=142  Identities=19%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             cccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccC------CCCCCCeeE--EEEee
Q 026113           12 MGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------FQSEGPRPV--MVSRS   83 (243)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~------~~~~t~~~~--~~~~~   83 (243)
                      -|..++|++...       +..+++ -.++++++|++|.|||||+|+|++........      .+..+....  .....
T Consensus         2 vg~~~lP~q~~r-------~~~KkG-~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie   73 (366)
T KOG2655|consen    2 VGFANLPNQVHR-------KSVKKG-FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE   73 (366)
T ss_pred             CccccChHHHHH-------HHHhcC-CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec
Confidence            456677777522       233333 57999999999999999999999885432111      111111111  12222


Q ss_pred             eCCe--EEEEEeCCCCCCCCCCcH-------HHHHHHHHHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHH
Q 026113           84 RAGF--TLNIVDTPGLIEGGYVNY-------HAIQLIKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITR  143 (243)
Q Consensus        84 ~~~~--~~~viDTPG~~~~~~~~~-------~~~~~~~~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~  143 (243)
                      -+|.  +++|+||||++|.-....       -..+....|+.           +..+|++||.++.....+...|..+++
T Consensus        74 e~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk  153 (366)
T KOG2655|consen   74 ENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMK  153 (366)
T ss_pred             CCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHH
Confidence            3344  789999999997532211       11222233332           347899999988776568888888888


Q ss_pred             HHHHHhcccccccEEEEEeCCCCC
Q 026113          144 AITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       144 ~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.+.      .++|-|+.|+|..
T Consensus       154 ~l~~~------vNiIPVI~KaD~l  171 (366)
T KOG2655|consen  154 KLSKK------VNLIPVIAKADTL  171 (366)
T ss_pred             HHhcc------ccccceeeccccC
Confidence            87775      5999999999986

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.47  E-value=6.2e-13  Score=117.85  Aligned_cols=131  Identities=22%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCC-eeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ...+++||+++|..|+||||||-+++..+..  ...|..-. .........+..+..++||+.-.   ..+....++++ 
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~--~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~---~~~~~l~~Eir-   78 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV--DAVPRRLPRILIPADVTPENVPTSIVDTSSDS---DDRLCLRKEIR-   78 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhcc--ccccccCCccccCCccCcCcCceEEEeccccc---chhHHHHHHHh-
Confidence            3457899999999999999999999988732  22222111 11112233455678999998432   22233455565 


Q ss_pred             HHhcCCCcEEEEEEeCCC-cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          114 FLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                           .+|+|++|+..|. .+.......||..+++.+|.....|+|+|+||+|+.+....+.+.
T Consensus        79 -----kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~  137 (625)
T KOG1707|consen   79 -----KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV  137 (625)
T ss_pred             -----hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence                 8999999998876 447777889999999999998889999999999997655554444

>cd04129 Rho2 Rho2 subfamily

Probab=99.46  E-value=1.1e-12  Score=104.00  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .||+++|.+|+|||||++.+.......  ....+............+  ..+.+|||||..........   .+      
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---~~------   70 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---SY------   70 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---hc------
Confidence            589999999999999999998554211  111111111222233344  35889999998544322211   11      


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++++|++++... +.+....|+..+....+   ..|+++|+||+|+.
T Consensus        71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~  118 (187)
T cd04129          71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR  118 (187)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence            4889999999887543 32333457777766543   27999999999984

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>COG2262 HflX GTPases [General function prediction only]

Probab=99.45  E-value=2.7e-12  Score=110.12  Aligned_cols=127  Identities=19%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .-..|.++|.||+|||||.|+|++..+. +.+.-..|-+++....... |..+.+-||-||.  ........+.++..+.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI--~~LP~~LV~AFksTLE  267 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFI--RDLPHPLVEAFKSTLE  267 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCc--ccCChHHHHHHHHHHH
Confidence            4479999999999999999999988864 3444445666666666555 7899999999996  4455566666666553


Q ss_pred             -cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 -NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 -~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                       ...+|++|+|++.......+........+.+ .|-.- .|+|+|+||+|+.+.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~~-~p~i~v~NKiD~~~~  319 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAE-IGADE-IPIILVLNKIDLLED  319 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCCC-CCEEEEEecccccCc
Confidence             3689999999666443222222333333333 33222 699999999997633

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.45  E-value=1.6e-12  Score=103.82  Aligned_cols=115  Identities=15%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc------ccc---------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAV------TVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~------~~~---------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      .++|+++|..++|||||+++|++....      ...         ...+.|.........+.+..+.++||||+.     
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-----   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-----   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence            579999999999999999999864100      000         012223333333445677889999999984     


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .....+...+  ..+|++++|++... .........+..+... +.   .++|+|+||+|+.
T Consensus        77 --~~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~  131 (195)
T cd01884          77 --DYIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMV  131 (195)
T ss_pred             --HHHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCC
Confidence              2222333222  48999999977653 2445555555554432 31   2488999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.45  E-value=8.1e-13  Score=105.60  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             ceEEEEEcCCCCcHHHHHH-HHhCCCc----ccccCCCCCCC-eeEE-E-------EeeeCC--eEEEEEeCCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVN-SIIGEKA----VTVSTFQSEGP-RPVM-V-------SRSRAG--FTLNIVDTPGLIEGGY  102 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin-~llg~~~----~~~~~~~~~t~-~~~~-~-------~~~~~~--~~~~viDTPG~~~~~~  102 (243)
                      .+||+++|.+|+|||||++ .+.+...    +.....|+... .... .       ....+|  ..+.+|||||..+.  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999996 4444321    11111121110 1111 1       012333  47999999999531  


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                              ++. ....++|++++|++++... +......|++.+.....   ..|+++|+||+|+.+
T Consensus        80 --------~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~  134 (195)
T cd01873          80 --------DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY  134 (195)
T ss_pred             --------hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence                    111 1125999999999986543 32222357777766532   269999999999853

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01890 LepA LepA subfamily

Probab=99.43  E-value=1.1e-12  Score=102.94  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccc-----cCC---------CCCCCeeEEEEe-----eeCCeEEEEEeCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTV-----STF---------QSEGPRPVMVSR-----SRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~-----~~~---------~~~t~~~~~~~~-----~~~~~~~~viDTPG~~~~~  101 (243)
                      +|+++|.+|+|||||++++++......     ..+         .+.+........     ...+..+.+|||||+.+..
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999999999997431110     000         011111111112     1235578899999996431


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                             ..+..++  .++|++++|+++... ........+..+.   ..  ..|+++|+||+|+.
T Consensus        82 -------~~~~~~~--~~ad~~i~v~D~~~~-~~~~~~~~~~~~~---~~--~~~iiiv~NK~Dl~  132 (179)
T cd01890          82 -------YEVSRSL--AACEGALLLVDATQG-VEAQTLANFYLAL---EN--NLEIIPVINKIDLP  132 (179)
T ss_pred             -------HHHHHHH--HhcCeEEEEEECCCC-ccHhhHHHHHHHH---Hc--CCCEEEEEECCCCC
Confidence                   1222333  379999999776531 2222222222222   11  26899999999984

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK09866 hypothetical protein; Provisional

Probab=99.42  E-value=1.5e-11  Score=111.46  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .++.++||||+..+...  ...+.+.+.+  ..+|+||||++.+. ..+..+..+++.+++. ++  ..|+++|+||+|.
T Consensus       230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhc-CC--CCCEEEEEEcccC
Confidence            36889999999754322  1222333333  48999999976653 2566777777777653 22  1499999999998


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       302 ~  302 (741)
T PRK09866        302 Q  302 (741)
T ss_pred             C
Confidence            5

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.42  E-value=2.3e-12  Score=114.89  Aligned_cols=118  Identities=16%  Similarity=0.125  Sum_probs=75.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc------------------------------cCCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------------STFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..++|||||+++|++......                              ...++.|.+.........+
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            3679999999999999999999995432110                              0123445555555666788


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      ..+.+|||||..+.   .......+      ..+|++++|++.+.. .........+..+ ..++.   .++++|+||+|
T Consensus        84 ~~i~liDtpG~~~~---~~~~~~~~------~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~---~~iivviNK~D  150 (425)
T PRK12317         84 YYFTIVDCPGHRDF---VKNMITGA------SQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGI---NQLIVAINKMD  150 (425)
T ss_pred             eEEEEEECCCcccc---hhhHhhch------hcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCC---CeEEEEEEccc
Confidence            89999999997432   11111111      489999999887541 1223333333333 33332   47999999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      +.
T Consensus       151 l~  152 (425)
T PRK12317        151 AV  152 (425)
T ss_pred             cc
Confidence            85

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.42  E-value=8.4e-12  Score=99.10  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=76.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----------------ccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----------------VSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLI   98 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~   98 (243)
                      +-.+|+++|..++|||||+++|++.....                 .......|.........  ..+..+.++||||..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            45899999999999999999999553110                 00112234444445555  788999999999983


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                             +....+...+  ..+|++++|++... .........+..+...     ..|+++|+||+|+.
T Consensus        82 -------~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   82 -------DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILREL-----GIPIIVVLNKMDLI  135 (188)
T ss_dssp             -------HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred             -------ceeeccccee--cccccceeeeeccc-cccccccccccccccc-----ccceEEeeeeccch
Confidence                   2233333333  58999999977754 2445555555555443     25899999999985

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.42  E-value=1.1e-12  Score=100.46  Aligned_cols=121  Identities=16%  Similarity=0.119  Sum_probs=81.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...|||+++|.+|+|||||.|.+...+. ........+.+.......++++  .+++|||+|+.......        - 
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF-~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--------~-   76 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--------V-   76 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHH-HHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--------c-
Confidence            3579999999999999999999998763 2222233333444445556665  68999999995433222        1 


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-cc-ccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQ-IWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~-~~~~~ivV~tk~D~~  167 (243)
                      ..-+++|.+++|++++.....+....|-+.+..... .+ -.-|+||++||.|+.
T Consensus        77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~  131 (210)
T KOG0394|consen   77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD  131 (210)
T ss_pred             ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence            112699999999999876544445555555544433 11 224899999999984

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.42  E-value=7.4e-12  Score=102.97  Aligned_cols=112  Identities=14%  Similarity=0.143  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc-----ccCC------------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVT-----VSTF------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~-----~~~~------------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      +|+++|..|+|||||+++|+...-..     +...            ...+.........+.+.++.+|||||+.+.   
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f---   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF---   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence            58999999999999999998642111     0000            011112233455678889999999999643   


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+....+      ..+|++++|++... ........+.+.+.+ .    ..|+++++||+|+.
T Consensus        78 ~~~~~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~-~----~~P~iivvNK~D~~  129 (237)
T cd04168          78 IAEVERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRK-L----NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHH-c----CCCEEEEEECcccc
Confidence            22222233      37899999977653 233333444444333 2    36999999999975

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.42  E-value=1.9e-12  Score=119.18  Aligned_cols=113  Identities=19%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             cCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEE
Q 026113           46 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY  125 (243)
Q Consensus        46 G~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~  125 (243)
                      |.+|+|||||+|+++|... .+++.++.|.+.......+++.++.+|||||+.+......+ .+..+.++....+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence            8999999999999999874 56777777776666666778889999999999765432211 112333444468999999


Q ss_pred             EEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          126 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       126 v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      |++.+  .... .   +....+....  ..|+++|+||+|+.+
T Consensus        79 VvDat--~ler-~---l~l~~ql~~~--~~PiIIVlNK~Dl~~  113 (591)
T TIGR00437        79 VVDAS--NLER-N---LYLTLQLLEL--GIPMILALNLVDEAE  113 (591)
T ss_pred             EecCC--cchh-h---HHHHHHHHhc--CCCEEEEEehhHHHH
Confidence            95543  3322 2   2222222222  369999999999853

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.41  E-value=1.2e-12  Score=98.93  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      ||+++|.+|+|||||+|++.+....    .. .|.     ...+.+   .+|||||...   ......+.+...  ..++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~a   63 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADA   63 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcC
Confidence            7999999999999999999988631    11 111     112222   6899999731   112223323222  2599


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++++...... ...+.+    .++    .|+++|+||+|+.
T Consensus        64 d~vilv~d~~~~~s~~-~~~~~~----~~~----~p~ilv~NK~Dl~  101 (142)
T TIGR02528        64 DVIALVQSATDPESRF-PPGFAS----IFV----KPVIGLVTKIDLA  101 (142)
T ss_pred             CEEEEEecCCCCCcCC-ChhHHH----hcc----CCeEEEEEeeccC
Confidence            9999998875432111 122222    222    4999999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.41  E-value=1.2e-12  Score=101.15  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      +|+++|.+|+|||||+|.|.|....  .   ..+     ....+.+.  .+|||||+....   ....+.+...+  .++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~-----~~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~~--~~a   65 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKT-----QAVEFNDK--GDIDTPGEYFSH---PRWYHALITTL--QDV   65 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--C---ccc-----eEEEECCC--CcccCCccccCC---HHHHHHHHHHH--hcC
Confidence            7999999999999999999987521  1   111     11122222  269999985432   23333333222  589


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |++++|++.+.....  ...   ++.+. +.  .+|+++++||+|+.
T Consensus        66 d~il~v~d~~~~~s~--~~~---~~~~~-~~--~~~ii~v~nK~Dl~  104 (158)
T PRK15467         66 DMLIYVHGANDPESR--LPA---GLLDI-GV--SKRQIAVISKTDMP  104 (158)
T ss_pred             CEEEEEEeCCCcccc--cCH---HHHhc-cC--CCCeEEEEEccccC
Confidence            999999877643211  111   22222 11  26899999999984

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=2e-12  Score=96.22  Aligned_cols=126  Identities=16%  Similarity=0.127  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +|++++|..|+|||.|+..+....... ......+.+.......+.+  .++++|||+|+.       ......+.|.  
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTiGveFgSrIinVGgK~vKLQIWDTAGQE-------rFRSVtRsYY--   79 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-------RFRSVTRSYY--   79 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcc-cccceeeeeecceeeeecCcEEEEEEeecccHH-------HHHHHHHHHh--
Confidence            799999999999999999988765321 1111112222222233333  489999999994       2223334444  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                      +++...++|+++......+....|+.-.+.+....  .-+++++||.|+.+.+++++.+.
T Consensus        80 RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEA  137 (214)
T KOG0086|consen   80 RGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEA  137 (214)
T ss_pred             ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHH
Confidence            58999999988876444455667777777766543  36888899999977777666544

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.40  E-value=6e-12  Score=102.00  Aligned_cols=119  Identities=20%  Similarity=0.235  Sum_probs=78.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|..|+|||||++++.+........ +..+...........  ...+.+|||+|+.+.       ...+..+. 
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------~~~~~~y~-   75 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------RSLRPEYY-   75 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------HHHHHHHh-
Confidence            4899999999999999999999887432222 211211111111122  457999999999422       22222232 


Q ss_pred             cCCCcEEEEEEeCCC-cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 ~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                       .+++++++|++... .+..+....|.+.+....+.  ..|+++|+||+|+...
T Consensus        76 -~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~  126 (219)
T COG1100          76 -RGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE  126 (219)
T ss_pred             -cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence             59999999977754 34555566777777776542  2699999999999743

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.40  E-value=5.6e-12  Score=101.08  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=70.2

Q ss_pred             EcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcE
Q 026113           45 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV  122 (243)
Q Consensus        45 vG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (243)
                      +|..|+|||||++++++... .....++............+  ...+.+|||||........       ..++  .++|+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~-------~~~~--~~ad~   70 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR-------DGYY--IQGQC   70 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHh--cCCCE
Confidence            59999999999999996552 22222222222222222333  4589999999995332111       1122  48999


Q ss_pred             EEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       123 il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +++|+++......+....|+..+.+...   ..|+++|+||+|+.
T Consensus        71 ~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~  112 (200)
T smart00176       71 AIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVK  112 (200)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence            9999888654322334567777776542   36999999999985

Ran is involved in the active transport of proteins through nuclear pores.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.39  E-value=1.3e-11  Score=103.41  Aligned_cols=112  Identities=16%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      +|+++|.+|+|||||+++|+...-     ..+.            .....|.........+.+..+.+|||||..+.   
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df---   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF---   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence            589999999999999999973211     0011            01122333334556788999999999998542   


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+    +.+++  ..+|++++|++... .........++.+.+.     ..|+++++||+|+.
T Consensus        78 ~~~----~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~  129 (270)
T cd01886          78 TIE----VERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRY-----NVPRIAFVNKMDRT  129 (270)
T ss_pred             HHH----HHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence            122    22222  37899999966543 2344444455444332     26999999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.38  E-value=8.9e-12  Score=97.90  Aligned_cols=125  Identities=19%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      .+.++... .+..+|+++|..||||||+++.+........  .|  |...........+..+.+||.+|....   ..  
T Consensus         4 ~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~--~p--T~g~~~~~i~~~~~~~~~~d~gG~~~~---~~--   73 (175)
T PF00025_consen    4 VLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISET--IP--TIGFNIEEIKYKGYSLTIWDLGGQESF---RP--   73 (175)
T ss_dssp             HHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE--EE--ESSEEEEEEEETTEEEEEEEESSSGGG---GG--
T ss_pred             HHHHhccc-CcEEEEEEECCCccchHHHHHHhhhcccccc--Cc--ccccccceeeeCcEEEEEEeccccccc---cc--
Confidence            34444432 4789999999999999999999997654321  12  333445566778999999999997422   11  


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+.++  .++|+++||++........+.+..+..+..... ....|+++++||.|+.
T Consensus        74 --~w~~y~--~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~  128 (175)
T PF00025_consen   74 --LWKSYF--QNADGIIFVVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLP  128 (175)
T ss_dssp             --GGGGGH--TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTST
T ss_pred             --cceeec--cccceeEEEEecccceeecccccchhhhcchhh-cccceEEEEecccccc
Confidence              122222  489999999766432211223333333322211 1247999999999974

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>CHL00071 tufA elongation factor Tu

Probab=99.38  E-value=1.2e-11  Score=109.50  Aligned_cols=116  Identities=14%  Similarity=0.053  Sum_probs=74.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      +..++|+++|.+++|||||+|+|++......               ....+.|..........++..+.++||||..   
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---   86 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---   86 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence            4679999999999999999999997521100               0012222222223344567789999999973   


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                          .....+...+  ..+|++++|++.+. .........+..+.. .+    .| +|+++||+|+.
T Consensus        87 ----~~~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~-~g----~~~iIvvvNK~D~~  141 (409)
T CHL00071         87 ----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQ-VG----VPNIVVFLNKEDQV  141 (409)
T ss_pred             ----HHHHHHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cC----CCEEEEEEEccCCC
Confidence                2333333333  48899999977653 244555555544443 23    35 78999999985

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.37  E-value=3.5e-12  Score=95.66  Aligned_cols=99  Identities=22%  Similarity=0.311  Sum_probs=61.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~-~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      ||+++|++|+|||||+++|.|....     ...|+.     ..+.+   .+|||||=+ +..    .....+..  ....
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~~---~~IDTPGEyiE~~----~~y~aLi~--ta~d   63 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYYD---NTIDTPGEYIENP----RFYHALIV--TAQD   63 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEecc---cEEECChhheeCH----HHHHHHHH--HHhh
Confidence            8999999999999999999997641     111221     11222   259999942 222    22222221  2258


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|+|++|.+.+....         .+...|..-+.+|+|-|+||+|+.
T Consensus        64 ad~V~ll~dat~~~~---------~~pP~fa~~f~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   64 ADVVLLLQDATEPRS---------VFPPGFASMFNKPVIGVITKIDLP  102 (143)
T ss_pred             CCEEEEEecCCCCCc---------cCCchhhcccCCCEEEEEECccCc
Confidence            999999977654321         111233333447999999999985

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.37  E-value=2.7e-11  Score=91.25  Aligned_cols=126  Identities=22%  Similarity=0.250  Sum_probs=84.6

Q ss_pred             HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113           27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~  106 (243)
                      .++++...+. .+++|+++|..||||||+++.+++.....++    .|.........+.+..+.+||.-|+-       .
T Consensus         5 silrk~k~ke-rE~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~-------~   72 (185)
T KOG0073|consen    5 SILRKQKLKE-REVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQK-------T   72 (185)
T ss_pred             HHHHHHHhhh-heeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcc-------h
Confidence            3455555332 5899999999999999999999999743222    24445566778899999999999983       3


Q ss_pred             HHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       107 ~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..++.++|+  ...|++++|++.......++....+..+... ..-+..+++++.||.|+.
T Consensus        73 lr~~W~nYf--estdglIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   73 LRSYWKNYF--ESTDGLIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             hHHHHHHhh--hccCeEEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCc
Confidence            344555665  3889999996653222223333333333220 112446999999999985

>cd04169 RF3 RF3 subfamily

Probab=99.36  E-value=2.9e-11  Score=101.14  Aligned_cols=113  Identities=12%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc-----c----------cCCC------CCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----V----------STFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLI   98 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~-----~----------~~~~------~~t~~~~~~~~~~~~~~~~viDTPG~~   98 (243)
                      -+|+++|..|+|||||+++|+...-..     +          .++.      ..+.........+.+..+.+|||||..
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999998532111     0          0000      011122234567788999999999985


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +..   .+....+      ..+|++++|++... ........+++.. +.    ...|+++++||+|+.
T Consensus        83 df~---~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~-~~----~~~P~iivvNK~D~~  136 (267)
T cd04169          83 DFS---EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVC-RL----RGIPIITFINKLDRE  136 (267)
T ss_pred             HHH---HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHH-Hh----cCCCEEEEEECCccC
Confidence            321   2222223      37899999977643 2322223333222 21    236999999999974

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>smart00053 DYNc Dynamin, GTPase

Probab=99.34  E-value=8.3e-11  Score=96.42  Aligned_cols=124  Identities=22%  Similarity=0.327  Sum_probs=71.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE--------------------------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM--------------------------------------   79 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~--------------------------------------   79 (243)
                      ...+++++|++|+||||++++|+|......+.. ..|..+..                                      
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g-~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCC-cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            446899999999999999999999753222110 01110000                                      


Q ss_pred             -----------EEeee---CCeEEEEEeCCCCCCCCC--C----cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhH-
Q 026113           80 -----------VSRSR---AGFTLNIVDTPGLIEGGY--V----NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-  138 (243)
Q Consensus        80 -----------~~~~~---~~~~~~viDTPG~~~~~~--~----~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~-  138 (243)
                                 ...+.   +-..+.++||||+.....  .    ...+.+.+..|+. ...++||+|++... .+...+ 
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~  181 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDA  181 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhH
Confidence                       00000   113599999999974311  1    1123333444443 34568888866543 233333 


Q ss_pred             HHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          139 KQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       139 ~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      .++.+++...     ++++++|+||+|..++
T Consensus       182 l~ia~~ld~~-----~~rti~ViTK~D~~~~  207 (240)
T smart00053      182 LKLAKEVDPQ-----GERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHHHHHHc-----CCcEEEEEECCCCCCc
Confidence            4555555432     3799999999998643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.33  E-value=9.2e-12  Score=103.32  Aligned_cols=121  Identities=23%  Similarity=0.327  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcH----HHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNY----HAIQLIKRF  114 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~----~~~~~~~~~  114 (243)
                      ..|.+||.+|||||||+|+|...+. .+..++.+|..+......+++. ++.|-|.||+......+.    ++++.+.  
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE--  273 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE--  273 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH--
Confidence            4688999999999999999998875 6888888888887776666665 599999999987766553    5566664  


Q ss_pred             HhcCCCcEEEEEEeCCCccc-Ch-hHHHHHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRV-DN-LDKQITRAITDNFGE-QIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~-~~-~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~  167 (243)
                          .++.++||+++..... +. .+.+.|..-.+.+.+ -..+|.++|.||+|+.
T Consensus       274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence                6789999987764311 11 122222222222222 2347899999999984

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.33  E-value=3.8e-11  Score=100.65  Aligned_cols=112  Identities=16%  Similarity=0.252  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc-----ccC------C------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVT-----VST------F------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~-----~~~------~------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      +|+++|.+|+|||||+|+|++..-..     +..      .      ...+.........+.+..+.+|||||..+.   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f---   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF---   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence            58999999999999999998542110     000      0      011122223445678889999999998532   


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                          ...+..++  ..+|++++|++.+.. ........++.+..     ...|.++|+||+|..
T Consensus        78 ----~~~~~~~l--~~aD~~i~Vvd~~~g-~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~  129 (268)
T cd04170          78 ----VGETRAAL--RAADAALVVVSAQSG-VEVGTEKLWEFADE-----AGIPRIIFINKMDRE  129 (268)
T ss_pred             ----HHHHHHHH--HHCCEEEEEEeCCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECCccC
Confidence                11222222  388999999776542 22222333333322     136999999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.33  E-value=2.5e-11  Score=114.20  Aligned_cols=115  Identities=14%  Similarity=0.076  Sum_probs=77.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++..|+++|..++|||||+++|.+..+. ....+..|.....+...+.+..+.+|||||..+..   ....    +.. 
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---~m~~----rga-  358 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---AMRA----RGA-  358 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch---hHHH----hhh-
Confidence            46789999999999999999999987653 22233344444445566778899999999986432   1211    111 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..+|++|+|++.+.. ........+.....     ...|+|+|+||+|+.
T Consensus       359 -~~aDiaILVVdAddG-v~~qT~e~i~~a~~-----~~vPiIVviNKiDl~  402 (787)
T PRK05306        359 -QVTDIVVLVVAADDG-VMPQTIEAINHAKA-----AGVPIIVAINKIDKP  402 (787)
T ss_pred             -hhCCEEEEEEECCCC-CCHhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence             478999999887642 22222333332221     236999999999984

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.33  E-value=2.8e-11  Score=111.13  Aligned_cols=115  Identities=16%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .++.+|+++|..++|||||+++|.+..+.. ...++.|.........+.+. .+.+|||||..+...   .    ..+. 
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~---~----r~rg-  155 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS---M----RARG-  155 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhh---H----HHhh-
Confidence            367899999999999999999999876532 22333444443444555444 899999999854321   1    1111 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ...+|++++|++++.. ........+.....     ...|+++++||+|+.
T Consensus       156 -a~~aDiaILVVda~dg-v~~qT~e~i~~~~~-----~~vPiIVviNKiDl~  200 (587)
T TIGR00487       156 -AKVTDIVVLVVAADDG-VMPQTIEAISHAKA-----ANVPIIVAINKIDKP  200 (587)
T ss_pred             -hccCCEEEEEEECCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcccc
Confidence             1488999999877642 22222223322221     236999999999985

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.33  E-value=1.2e-12  Score=97.98  Aligned_cols=125  Identities=18%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      -.+||+++|..-+|||||+-.+...+.. .................+  ...++.||||+|+.......+-   +     
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn-~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI---Y-----   82 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFN-CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI---Y-----   82 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcc-hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCce---E-----
Confidence            4699999999999999999888866531 111110000111111222  2347999999999654333321   1     


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                       .++.+..|+|+++......+.-+.|+..++...|..+  -+++|+||+|+.+.+.++.
T Consensus        83 -YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~  138 (218)
T KOG0088|consen   83 -YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTR  138 (218)
T ss_pred             -EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhH
Confidence             1489999999999765555678899999999999875  7999999999965554443

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.33  E-value=1.3e-11  Score=92.52  Aligned_cols=115  Identities=19%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCc
Q 026113           44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID  121 (243)
Q Consensus        44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~  121 (243)
                      ++|.+|+|||||+|++++........ ..+...........  .+..+.+|||||..+.....       ..+.  ..+|
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~   70 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEY-ETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGAD   70 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCccc-ccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCC
Confidence            57999999999999999887521111 11112222222222  35689999999985432111       1111  5899


Q ss_pred             EEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       122 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ++++|+++...........+...... .......|+++|+||+|+...
T Consensus        71 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~  117 (157)
T cd00882          71 GIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEE  117 (157)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccc
Confidence            99999777643211111111111111 112334799999999998643

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.32  E-value=2.5e-11  Score=97.59  Aligned_cols=115  Identities=18%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc-ccC-CCCCCCeeEEEEeee---------------------------CC----
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVT-VST-FQSEGPRPVMVSRSR---------------------------AG----   86 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~-~~~-~~~~t~~~~~~~~~~---------------------------~~----   86 (243)
                      ++|+++|..|+|||||+.+|.+..... ... ....+.........+                           .+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            478999999999999999998762100 000 000011110000000                           12    


Q ss_pred             --eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           87 --FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        87 --~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                        ..+.+|||||..       .+...+...+  ..+|++++|++++...........+..+.. .+.   .|+++|+||+
T Consensus        81 ~~~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~  147 (203)
T cd01888          81 LVRHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKI  147 (203)
T ss_pred             cccEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEch
Confidence              689999999962       2222222222  478999999877642122222334433322 221   5799999999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |+.
T Consensus       148 Dl~  150 (203)
T cd01888         148 DLV  150 (203)
T ss_pred             hcc
Confidence            985

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04167 Snu114p Snu114p subfamily

Probab=99.31  E-value=8.9e-11  Score=95.08  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc---------CC---------CCCCCeeEEEEee-----eCCeEEEEEeCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---------TF---------QSEGPRPVMVSRS-----RAGFTLNIVDTPGL   97 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~---------~~---------~~~t~~~~~~~~~-----~~~~~~~viDTPG~   97 (243)
                      +|+++|..|+|||||+++|++.......         ..         ...+.........     .....+.+|||||.
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999865321110         00         0011111111111     12367999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.   .......+      ..+|++++|++.... .......+++....   .  ..|+++|+||+|+.
T Consensus        82 ~~f---~~~~~~~~------~~aD~~llVvD~~~~-~~~~~~~~~~~~~~---~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNF---MDEVAAAL------RLSDGVVLVVDVVEG-VTSNTERLIRHAIL---E--GLPIVLVINKIDRL  136 (213)
T ss_pred             cch---HHHHHHHH------HhCCEEEEEEECCCC-CCHHHHHHHHHHHH---c--CCCEEEEEECcccC
Confidence            643   12222223      388999999776432 22233333333221   1  26999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.31  E-value=4.1e-11  Score=97.13  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||++.++.... .....++..........  ......+.+|||||........       ..+
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~-------~~~   78 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEF-EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR-------DGY   78 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH
Confidence            3569999999999999999986654432 11112222212111112  2234589999999974321111       112


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .  ..++++++|+++...........++..+.....   ..|+++|+||+|+.
T Consensus        79 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~  126 (215)
T PTZ00132         79 Y--IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK  126 (215)
T ss_pred             h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence            2  478999999888643322333456666655432   26899999999985

>PRK12735 elongation factor Tu; Reviewed

Probab=99.30  E-value=8.6e-11  Score=103.74  Aligned_cols=119  Identities=12%  Similarity=0.071  Sum_probs=72.7

Q ss_pred             hcCCCceEEEEEcCCCCcHHHHHHHHhCCC------ccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113           34 QENVNTLTILVMGKGGVGKSSTVNSIIGEK------AVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI   98 (243)
Q Consensus        34 ~~~~~~~~IllvG~~g~GKSSlin~llg~~------~~~---------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~   98 (243)
                      ++.++.++|+++|..++|||||+++|++..      .+.         .....+.|.+........++..+.++||||..
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            344578999999999999999999999621      000         00012223333233344567789999999983


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                             ++...+...+  ..+|++++|++... .......+.+..+.. .+    .| +++|+||+|+.
T Consensus        87 -------~f~~~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~  141 (396)
T PRK12735         87 -------DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMV  141 (396)
T ss_pred             -------HHHHHHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHH-cC----CCeEEEEEEecCCc
Confidence                   2222333222  48899999977653 233334444433332 22    46 45689999985

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.30  E-value=4.7e-12  Score=99.62  Aligned_cols=116  Identities=19%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-Ce--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...|+++||..++|||+++.++.... +.....|.. .+.......++ |+  .+.+|||+|+.+.+...         -
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTV-Fdnys~~v~V~dg~~v~L~LwDTAGqedYDrlR---------p   71 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTV-FDNYSANVTVDDGKPVELGLWDTAGQEDYDRLR---------P   71 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCc-CcccccCeE-EccceEEEEecCCCEEEEeeeecCCCccccccc---------c
Confidence            46899999999999999988877553 333333322 23333445553 65  68899999998764322         2


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++-+.+|+||+|++++... +.+...+|+..++..++.   .|+|+|+||.|++
T Consensus        72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr  122 (198)
T KOG0393|consen   72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR  122 (198)
T ss_pred             cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence            2447999999999986543 555678889888888743   6999999999997

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.29  E-value=1.5e-11  Score=92.63  Aligned_cols=149  Identities=16%  Similarity=0.064  Sum_probs=95.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe---eeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-H
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR---SRAGFTLNIVDTPGLIEGGYVNYHAIQLIK-R  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~viDTPG~~~~~~~~~~~~~~~~-~  113 (243)
                      -.+|++++|.+-+|||||+..++..+.+..+ .|..+.+....-.   .....++++|||+|+.        .++.+. .
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqe--------rfrsitks   77 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQE--------RFRSITKS   77 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchH--------HHHHHHHH
Confidence            3589999999999999999999977644333 2322222211111   1223589999999994        333332 3


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHcccc
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST  193 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~  193 (243)
                      |.  ++.-++++|+++.+....+.-..|++.-+...+.....-..+|++|+|+...+.++.++..+-....-..+|+.+.
T Consensus        78 yy--rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSa  155 (213)
T KOG0091|consen   78 YY--RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSA  155 (213)
T ss_pred             Hh--hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecc
Confidence            33  4777889998987755667777888777766653333447889999999877777777654433333344666655


Q ss_pred             CCcc
Q 026113          194 WMKK  197 (243)
Q Consensus       194 ~~~~  197 (243)
                      +-..
T Consensus       156 k~g~  159 (213)
T KOG0091|consen  156 KNGC  159 (213)
T ss_pred             cCCC
Confidence            5433

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.28  E-value=6.7e-11  Score=102.31  Aligned_cols=133  Identities=13%  Similarity=0.173  Sum_probs=87.9

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC----Ccc-----------cccCCCC---CCCeeEE---EEeee--
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE----KAV-----------TVSTFQS---EGPRPVM---VSRSR--   84 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~----~~~-----------~~~~~~~---~t~~~~~---~~~~~--   84 (243)
                      +.+.+.++....+.|.++|+.++|||||+|++.+.    +..           .+++.++   +|.++..   ...+.  
T Consensus         6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~   85 (492)
T TIGR02836         6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI   85 (492)
T ss_pred             HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence            55667777778999999999999999999999998    544           3344444   3444433   11111  


Q ss_pred             -C--CeEEEEEeCCCCCCCCCCcHHHHHH----------------------HHHHHhcCCCcEEEEEE-eC-----CCcc
Q 026113           85 -A--GFTLNIVDTPGLIEGGYVNYHAIQL----------------------IKRFLLNKTIDVLLYVD-RL-----DVYR  133 (243)
Q Consensus        85 -~--~~~~~viDTPG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~il~v~-~~-----d~~~  133 (243)
                       +  ..++.++||+|+.+.+.......+.                      .++.+ ..++++-|+|. +-     ....
T Consensus        86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI-~dhstIgivVtTDgsi~dI~Re~  164 (492)
T TIGR02836        86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI-QEHSTIGVVVTTDGTITDIPRED  164 (492)
T ss_pred             cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH-HhcCcEEEEEEcCCCcccccccc
Confidence             1  2489999999998765443211111                      11111 13788888884 22     1123


Q ss_pred             cChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          134 VDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       134 ~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+.++++.+++.     .+|+++|+|++|-
T Consensus       165 y~~aEe~~i~eLk~~-----~kPfiivlN~~dp  192 (492)
T TIGR02836       165 YVEAEERVIEELKEL-----NKPFIILLNSTHP  192 (492)
T ss_pred             chHHHHHHHHHHHhc-----CCCEEEEEECcCC
Confidence            567788888888875     3799999999994

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.28  E-value=4.4e-11  Score=106.67  Aligned_cols=118  Identities=13%  Similarity=0.142  Sum_probs=72.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc------------------------c------CCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------S------TFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~------------------------~------~~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..++|||||+++|+...-...                        .      ...+.|.+.......+.+
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            4679999999999999999999984211000                        0      011233333344556678


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC--hhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD--NLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~--~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      ..+.+|||||..+       +...+...+  ..+|++++|++++...+.  ......+ .+...++.   .++++|+||+
T Consensus        85 ~~i~iiDtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~---~~iIVviNK~  151 (426)
T TIGR00483        85 YEVTIVDCPGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGI---NQLIVAINKM  151 (426)
T ss_pred             eEEEEEECCCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCC---CeEEEEEECh
Confidence            8999999999732       222222222  489999999887643211  1111111 22333332   5799999999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |+.
T Consensus       152 Dl~  154 (426)
T TIGR00483       152 DSV  154 (426)
T ss_pred             hcc
Confidence            985

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.28  E-value=1.8e-10  Score=102.92  Aligned_cols=117  Identities=13%  Similarity=0.052  Sum_probs=75.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      .+..++|+++|..++|||||+++|++.      ....         .....+.|.+......+.++.++.++||||+.+ 
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-  136 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-  136 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence            457899999999999999999999743      1000         011133344444445556678899999999842 


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                            +...+...+  ..+|++++|++.+. .....+.+.+..+... +    .| +|+|+||+|+.
T Consensus       137 ------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv  190 (447)
T PLN03127        137 ------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVV  190 (447)
T ss_pred             ------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccC
Confidence                  222222222  36999999977653 2344455555554432 3    46 67899999985

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.28  E-value=1.8e-10  Score=93.71  Aligned_cols=112  Identities=14%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeC----------CeEEEEEeCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------GFTLNIVDTP   95 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------~~~~~viDTP   95 (243)
                      +|+++|..++|||||+.+|+...-.....               ..+.|.........+.          +..+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998543110000               0011111111111222          5679999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        96 G~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |..+.   ..+....+      ..+|++++|+++... ........++....   .+  .|+++|+||+|+.
T Consensus        82 G~~~f---~~~~~~~l------~~aD~~ilVvD~~~g-~~~~t~~~l~~~~~---~~--~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDF---SSEVTAAL------RLCDGALVVVDAVEG-VCVQTETVLRQALK---ER--VKPVLVINKIDRL  138 (222)
T ss_pred             Ccccc---HHHHHHHH------HhcCeeEEEEECCCC-CCHHHHHHHHHHHH---cC--CCEEEEEECCCcc
Confidence            99643   22333333      389999999777542 33333333333322   22  5899999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.28  E-value=5.2e-11  Score=96.89  Aligned_cols=114  Identities=14%  Similarity=0.144  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcc--c----------------------c------cCCCCCCCeeEEEEeeeCCeEEE
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAV--T----------------------V------STFQSEGPRPVMVSRSRAGFTLN   90 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~--~----------------------~------~~~~~~t~~~~~~~~~~~~~~~~   90 (243)
                      +|+++|..++|||||+.+|+...-.  .                      .      ......|.+.......+.+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999999732100  0                      0      00122333444455677899999


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc------cChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        91 viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      +|||||+.+       ....+...+  ..+|++++|++.....      ........+... ...+.   +|+++|+||+
T Consensus        81 liDtpG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~  147 (219)
T cd01883          81 ILDAPGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKM  147 (219)
T ss_pred             EEECCChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEcc
Confidence            999999732       111122222  4799999997765421      111122222222 22221   5899999999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |+.
T Consensus       148 Dl~  150 (219)
T cd01883         148 DDV  150 (219)
T ss_pred             ccc
Confidence            985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.28  E-value=1.3e-10  Score=94.86  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCCC------------------------eeEEEEe
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF--------------QSEGP------------------------RPVMVSR   82 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~--------------~~~t~------------------------~~~~~~~   82 (243)
                      ||+++|..++|||||++.+..... .....              .+.|.                        .......
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            589999999999999999985321 10000              00000                        0000122


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      ...+..+.++||||..       ...+.+...+....+|++++|++++. ...+.+..++.++... +    .|+++|+|
T Consensus        80 ~~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~-~----ip~ivvvN  146 (224)
T cd04165          80 EKSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALAL-N----IPVFVVVT  146 (224)
T ss_pred             eeCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence            3457789999999973       22233333332246899999977654 3566777777776653 2    68999999


Q ss_pred             CCCCC
Q 026113          163 HAQLS  167 (243)
Q Consensus       163 k~D~~  167 (243)
                      |+|+.
T Consensus       147 K~D~~  151 (224)
T cd04165         147 KIDLA  151 (224)
T ss_pred             Ccccc
Confidence            99985

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12736 elongation factor Tu; Reviewed

Probab=99.27  E-value=1.1e-10  Score=103.10  Aligned_cols=117  Identities=14%  Similarity=0.052  Sum_probs=73.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc---------------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      .++.++|+++|..++|||||+++|++.....               .....+.|.+.........+..+.+|||||..  
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--
Confidence            4578999999999999999999999742100               00012233333333334467789999999973  


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                           ++...+...+  ..+|++++|++.+. .........+..+... |    .| +|+|+||+|+.
T Consensus        87 -----~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~  141 (394)
T PRK12736         87 -----DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLV  141 (394)
T ss_pred             -----HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCc
Confidence                 2222222222  47899999977653 2334445555444432 3    45 78999999985

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.27  E-value=7.8e-11  Score=108.49  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.|+++|..++|||||+|+|+|....  ......+.|.+.........+..+.+|||||..       .....+...+  
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~--   71 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG--   71 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--
Confidence            46899999999999999999985421  111222334444334455667899999999973       2222222222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++++.. ........+..+. ..+.   .++++|+||+|+.
T Consensus        72 ~~aD~aILVVDa~~G-~~~qT~ehl~il~-~lgi---~~iIVVlNK~Dlv  116 (581)
T TIGR00475        72 GGIDAALLVVDADEG-VMTQTGEHLAVLD-LLGI---PHTIVVITKADRV  116 (581)
T ss_pred             ccCCEEEEEEECCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEECCCCC
Confidence            489999999887642 2233334443333 2331   2499999999986

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.26  E-value=5.8e-11  Score=110.93  Aligned_cols=115  Identities=11%  Similarity=0.077  Sum_probs=72.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIK  112 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~viDTPG~~~~~~~~~~~~~~~~  112 (243)
                      .++.+|+++|.+++|||||+++|++..... ...++.|.....+...+    .+..+.+|||||..+       +.....
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~  313 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRS  313 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHH
Confidence            367899999999999999999999876432 22223333222222222    357899999999832       111222


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +++  ..+|++++|++++.. ........+..+..     ...|+|+|+||+|+.
T Consensus       314 rg~--~~aDiaILVVDA~dG-v~~QT~E~I~~~k~-----~~iPiIVViNKiDl~  360 (742)
T CHL00189        314 RGA--NVTDIAILIIAADDG-VKPQTIEAINYIQA-----ANVPIIVAINKIDKA  360 (742)
T ss_pred             HHH--HHCCEEEEEEECcCC-CChhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence            222  489999999877542 22222333333322     236999999999985

>PLN03126 Elongation factor Tu; Provisional

Probab=99.26  E-value=2.1e-10  Score=103.12  Aligned_cols=118  Identities=13%  Similarity=0.037  Sum_probs=72.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      .+..++|+++|..++|||||+++|++......               ......|.+.........+..+.+|||||..+ 
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-  156 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-  156 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence            35679999999999999999999996321100               01112222222333455778999999999842 


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                            +...+...+  ..+|++++|++.+.- .....++.+..+. ..|.   .++|+++||+|+.
T Consensus       157 ------f~~~~~~g~--~~aD~ailVVda~~G-~~~qt~e~~~~~~-~~gi---~~iIvvvNK~Dl~  210 (478)
T PLN03126        157 ------YVKNMITGA--AQMDGAILVVSGADG-PMPQTKEHILLAK-QVGV---PNMVVFLNKQDQV  210 (478)
T ss_pred             ------HHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEeccccc
Confidence                  223333222  488999999776532 3333344443333 2332   3488999999985

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.25  E-value=9.1e-11  Score=95.64  Aligned_cols=121  Identities=17%  Similarity=0.086  Sum_probs=70.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLN  117 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~~~  117 (243)
                      ||+++|+.|+||||..+.+++.-.+.....-..|......... .....+.+||.||+.+.-...  ......+      
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if------   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF------   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH------
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH------
Confidence            7999999999999999999987543322222233333333333 345699999999997553321  1111122      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++++++||+++......+.-..+...+......+....+-+.+.|+|+.
T Consensus        75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l  124 (232)
T PF04670_consen   75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL  124 (232)
T ss_dssp             CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred             hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence            48899999987753333333344444444443334446799999999986

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.24  E-value=2.2e-10  Score=101.17  Aligned_cols=117  Identities=13%  Similarity=0.062  Sum_probs=72.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      +..++|+++|..++|||||+++|++.      ..+.         .....+.|.+.........+..+.+|||||..+  
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence            46799999999999999999999843      1000         001123344433334445677899999999842  


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                           +...+...+  ..+|++++|++++.. ......+.+..+... +.   .++|+|+||+|+.
T Consensus        88 -----f~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~  141 (394)
T TIGR00485        88 -----YVKNMITGA--AQMDGAILVVSATDG-PMPQTREHILLARQV-GV---PYIVVFLNKCDMV  141 (394)
T ss_pred             -----HHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence                 222222222  478999999777531 334444455444332 21   3455789999985

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.23  E-value=1.2e-10  Score=104.78  Aligned_cols=118  Identities=17%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc------------CC--------------------CCCCCeeEEEEee
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------TF--------------------QSEGPRPVMVSRS   83 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~------------~~--------------------~~~t~~~~~~~~~   83 (243)
                      .+..++|+++|..++|||||+++|+...-....            ..                    .+.|.+.......
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            357899999999999999999999855311110            00                    0112222233345


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113           84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus        84 ~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      +++..+.+|||||..       .+...+...+  ..+|++++|++.+.. ........+. +...++.   +++|+|+||
T Consensus       104 ~~~~~i~~iDTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~G-~~~qt~~~~~-l~~~lg~---~~iIvvvNK  169 (474)
T PRK05124        104 TEKRKFIIADTPGHE-------QYTRNMATGA--STCDLAILLIDARKG-VLDQTRRHSF-IATLLGI---KHLVVAVNK  169 (474)
T ss_pred             cCCcEEEEEECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCCC-ccccchHHHH-HHHHhCC---CceEEEEEe
Confidence            677899999999963       1222222222  589999999776532 2222222222 2333332   589999999


Q ss_pred             CCCC
Q 026113          164 AQLS  167 (243)
Q Consensus       164 ~D~~  167 (243)
                      +|+.
T Consensus       170 iD~~  173 (474)
T PRK05124        170 MDLV  173 (474)
T ss_pred             eccc
Confidence            9985

>PRK00049 elongation factor Tu; Reviewed

Probab=99.23  E-value=3.4e-10  Score=99.92  Aligned_cols=117  Identities=12%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcc------cc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAV------TV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~------~~---------~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      .+..++|+++|..++|||||+++|++....      ..         ......|.+.........+..+.++||||+.  
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA--   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH--
Confidence            357899999999999999999999973110      00         0012223333333334567789999999983  


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEE-EEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i-vV~tk~D~~  167 (243)
                           +....+...+  ..+|++++|++.+. .........+..+.. ++    .|.+ +++||+|+.
T Consensus        87 -----~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~-~g----~p~iiVvvNK~D~~  141 (396)
T PRK00049         87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMV  141 (396)
T ss_pred             -----HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHH-cC----CCEEEEEEeecCCc
Confidence                 2223333222  58999999977653 244455555554443 23    4655 689999985

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.21  E-value=7.6e-11  Score=98.29  Aligned_cols=85  Identities=24%  Similarity=0.388  Sum_probs=70.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRF  114 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~  114 (243)
                      ..+++++|.+++|||||+|.|++.+. .+..++.+|..+......+.|.+++++|+||+.......    .+++..+   
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~---  138 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA---  138 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee---
Confidence            46999999999999999999999984 678888899888888899999999999999988654433    3444444   


Q ss_pred             HhcCCCcEEEEEEeCC
Q 026113          115 LLNKTIDVLLYVDRLD  130 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d  130 (243)
                         +++|+|++|+++.
T Consensus       139 ---R~ADlIiiVld~~  151 (365)
T COG1163         139 ---RNADLIIIVLDVF  151 (365)
T ss_pred             ---ccCCEEEEEEecC
Confidence               4999999996665

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.21  E-value=2.7e-10  Score=95.70  Aligned_cols=120  Identities=22%  Similarity=0.271  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCC----CcHHHHHHHHHHH
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGY----VNYHAIQLIKRFL  115 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~----~~~~~~~~~~~~~  115 (243)
                      -|.+||-+++|||||++.+...+. .+.++|.+|..+....... .+.++.+-|-||+.+...    ...+.++.+.   
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE---  236 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE---  236 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH---
Confidence            456899999999999999998874 6788899888887666554 556799999999987544    3456777776   


Q ss_pred             hcCCCcEEEEEEeCCCccc--ChhHH-HHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRV--DNLDK-QITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         .+.++++|+++.....  ...+. .+...+.+.-..-..+|.++|+||+|+.
T Consensus       237 ---Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~  288 (369)
T COG0536         237 ---RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP  288 (369)
T ss_pred             ---hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence               5578999977754321  11222 2333333322223448999999999964

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=1.2e-10  Score=85.60  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=83.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      -++-+++|..|+|||+|+..+...+  +..+.|.+ +.+......++.|  .++++|||+|+..       .....+.|.
T Consensus        11 ifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqer-------fravtrsyy   81 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYY   81 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHHH-------HHHHHHHHh
Confidence            3788999999999999999998776  33444432 2222233344444  4799999999942       222333333


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHh
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK  180 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~  180 (243)
                        +++...|+|+++...+.......|+..-+.+-.  ...-+++++||+|+...+++.+++....
T Consensus        82 --rgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~f  142 (215)
T KOG0097|consen   82 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEF  142 (215)
T ss_pred             --ccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHH
Confidence              588899999888754333344444443333322  2235888999999988888888765443

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.20  E-value=8.9e-11  Score=109.51  Aligned_cols=117  Identities=12%  Similarity=0.085  Sum_probs=72.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC----------CCC----------------------CCCeeEEEEeee
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----------FQS----------------------EGPRPVMVSRSR   84 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~----------~~~----------------------~t~~~~~~~~~~   84 (243)
                      ++.++|+++|..++|||||+|+|+...-.....          ..+                      .|.+.......+
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            467999999999999999999999653221100          111                      122222334456


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .+.++.++||||..+       ....+...+  ..+|++++|++.+.. ........+..+ ...+.   +++++|+||+
T Consensus       102 ~~~~~~liDtPG~~~-------f~~~~~~~~--~~aD~~llVvda~~g-~~~~t~e~~~~~-~~~~~---~~iivvvNK~  167 (632)
T PRK05506        102 PKRKFIVADTPGHEQ-------YTRNMVTGA--STADLAIILVDARKG-VLTQTRRHSFIA-SLLGI---RHVVLAVNKM  167 (632)
T ss_pred             CCceEEEEECCChHH-------HHHHHHHHH--HhCCEEEEEEECCCC-ccccCHHHHHHH-HHhCC---CeEEEEEEec
Confidence            778899999999732       222222222  489999999776532 222223333332 22332   5799999999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |+.
T Consensus       168 D~~  170 (632)
T PRK05506        168 DLV  170 (632)
T ss_pred             ccc
Confidence            985

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.20  E-value=4.6e-10  Score=105.66  Aligned_cols=114  Identities=15%  Similarity=0.098  Sum_probs=74.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      -.+|+++|..++|||||+|+|++..-..     +..            ..+.|.........+.+..+.+|||||+.+..
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT   89 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence            4599999999999999999998432110     111            12233344455667889999999999996532


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         .++...+      ..+|++++|++... .........+..+...     ..|+++|+||+|+.
T Consensus        90 ---~~~~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~  140 (689)
T TIGR00484        90 ---VEVERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRY-----EVPRIAFVNKMDKT  140 (689)
T ss_pred             ---HHHHHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence               1233333      37899999977643 2333344444443322     26899999999985

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.20  E-value=5.5e-10  Score=102.93  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=72.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc---------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~  105 (243)
                      +|+++|..++|||||+++|+...-....               ...+.|.........+.+..+.+|||||..+..   .
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---~   79 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---G   79 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---H
Confidence            7999999999999999999853211100               011223333445567889999999999985421   2


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +    +.+++  ..+|++++|++... ........++..+...     ..|+++|+||+|+.
T Consensus        80 e----v~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~  129 (594)
T TIGR01394        80 E----VERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP  129 (594)
T ss_pred             H----HHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence            2    23333  38899999977643 2333344444444331     25899999999984

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.19  E-value=6e-10  Score=102.68  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      --+|+++|..++|||||+++|+...-.....               ..+.|.........+.+..+.+|||||..+..  
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--   82 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--   82 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence            4689999999999999999999642111110               01112222334456788899999999986542  


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++...+      ..+|++++|++... .........+..+.. .    ..|.++|+||+|..
T Consensus        83 -~~v~~~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~-~----gip~IVviNKiD~~  133 (607)
T PRK10218         83 -GEVERVM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFA-Y----GLKPIVVINKVDRP  133 (607)
T ss_pred             -HHHHHHH------HhCCEEEEEEeccc-CccHHHHHHHHHHHH-c----CCCEEEEEECcCCC
Confidence             2233233      48999999977643 223333333333332 2    25889999999974

>cd01858 NGP_1 NGP-1

Probab=99.19  E-value=8.4e-11  Score=90.65  Aligned_cols=57  Identities=23%  Similarity=0.372  Sum_probs=45.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   97 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~   97 (243)
                      .+.+|+++|.+|+|||||+|+|++.....++..+++|.......   .+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence            56899999999999999999999988777777777665443322   2345899999996

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12739 elongation factor G; Reviewed

Probab=99.19  E-value=3.7e-10  Score=106.33  Aligned_cols=115  Identities=18%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      +-.+|.++|..++|||||+++|+...-     ..+.            ...+.|.........+.+..+.++||||+.+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f   86 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF   86 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence            456899999999999999999975311     0011            11233444445566788999999999998531


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                             ...+.+.+  ..+|++++|++... .....+...+..+.+.     ..|.++++||+|+.
T Consensus        87 -------~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~  138 (691)
T PRK12739         87 -------TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKY-----GVPRIVFVNKMDRI  138 (691)
T ss_pred             -------HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence                   11222222  37899999966543 2444455555444332     26899999999986

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.19  E-value=2.6e-10  Score=104.74  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=68.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------CCeEEEEEeCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIE   99 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~viDTPG~~~   99 (243)
                      ++..|+++|.+++|||||+|+|++..+.... ....|.+........                  ....+.+|||||+.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e-~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKRE-AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccccccc-CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            3567999999999999999999988643211 111222111100100                  012488999999843


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...       ....+.  ..+|++++|++++. .........+..+...     ..|+++|+||+|+.
T Consensus        82 f~~-------l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        82 FTN-------LRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI  134 (590)
T ss_pred             HHH-------HHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence            211       111122  48999999988764 2333344444444322     36999999999985

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.18  E-value=2e-10  Score=89.84  Aligned_cols=136  Identities=17%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .-.|+++|++|+|||+|...|......  ....+.  .+ ......   .+..+.+||+||...   ......+.+.   
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~--~T~tS~--e~-n~~~~~~~~~~~~~~lvD~PGH~r---lr~~~~~~~~---   71 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTV--PTVTSM--EN-NIAYNVNNSKGKKLRLVDIPGHPR---LRSKLLDELK---   71 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS-----B---S--SE-EEECCGSSTCGTCECEEEETT-HC---CCHHHHHHHH---
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcC--Ceeccc--cC-CceEEeecCCCCEEEEEECCCcHH---HHHHHHHhhh---
Confidence            457999999999999999999976421  111111  11 112222   456899999999953   3334333321   


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc----ccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV  189 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i  189 (243)
                      ..+.+.+|+||++.  ......-+...+.+...+-    .....|++|+.||.|+...  .+.....+...+++..+.
T Consensus        72 ~~~~~k~IIfvvDS--s~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A--~~~~~Ik~~LE~Ei~~lr  145 (181)
T PF09439_consen   72 YLSNAKGIIFVVDS--STDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA--KPPKKIKKLLEKEIDKLR  145 (181)
T ss_dssp             HHGGEEEEEEEEET--TTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-----HHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEEEEEeC--ccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc--CCHHHHHHHHHHHHHHHH
Confidence            12478999999554  3333333444444443332    1234789999999998632  223333233344444444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01900 YchF YchF subfamily

Probab=99.18  E-value=1.3e-10  Score=97.10  Aligned_cols=84  Identities=24%  Similarity=0.295  Sum_probs=61.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCc
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVN  104 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~viDTPG~~~~~~~~  104 (243)
                      |.++|.+|+|||||+|+|++... .++.+|.+|..+......+.+.                 .+.++||||+.......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            57899999999999999999986 7788888887776655555442                 49999999998654333


Q ss_pred             HHHHHHHHHHHhc-CCCcEEEEEEeC
Q 026113          105 YHAIQLIKRFLLN-KTIDVLLYVDRL  129 (243)
Q Consensus       105 ~~~~~~~~~~~~~-~~~~~il~v~~~  129 (243)
                      ...-   .+++.. ..+|++++|++.
T Consensus        80 ~glg---~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          80 EGLG---NKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             hHHH---HHHHHHHHhCCEEEEEEeC
Confidence            2211   122221 489999999765

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.18  E-value=2.2e-10  Score=98.81  Aligned_cols=86  Identities=23%  Similarity=0.305  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~~  102 (243)
                      ++|.++|.+|+|||||+|+|++.. ..++.+|.+|..+......+.+                 ..+.++||||+.....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            689999999999999999999998 4778888888777665544433                 2599999999986543


Q ss_pred             CcHHHHHHHHHHHhc-CCCcEEEEEEeC
Q 026113          103 VNYHAIQLIKRFLLN-KTIDVLLYVDRL  129 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~-~~~~~il~v~~~  129 (243)
                      ..+..-   .+++.. ..+|++++|++.
T Consensus        82 ~g~glg---~~fL~~i~~aD~li~VVd~  106 (364)
T PRK09601         82 KGEGLG---NQFLANIREVDAIVHVVRC  106 (364)
T ss_pred             hHHHHH---HHHHHHHHhCCEEEEEEeC
Confidence            322111   122211 489999999775

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.18  E-value=1.1e-10  Score=91.33  Aligned_cols=57  Identities=28%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   97 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~   97 (243)
                      .+++++++|.+|+|||||+|+|++...+.++..|++|........   +..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence            458999999999999999999999988788888887765444332   346999999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PTZ00258 GTP-binding protein; Provisional

Probab=99.17  E-value=2e-10  Score=100.15  Aligned_cols=86  Identities=24%  Similarity=0.313  Sum_probs=65.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-----------------CeEEEEEeCCCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-----------------GFTLNIVDTPGLIE   99 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~viDTPG~~~   99 (243)
                      ...++|.++|.+|+|||||+|+|++... .++++|.+|..+......+.                 +.++.++||||+..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            4678999999999999999999998874 77888888887776665544                 23599999999975


Q ss_pred             CCCCcH----HHHHHHHHHHhcCCCcEEEEEEeC
Q 026113          100 GGYVNY----HAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus       100 ~~~~~~----~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      ......    ..+..+      ..+|++++|++.
T Consensus        98 ga~~g~gLg~~fL~~I------r~aD~il~VVd~  125 (390)
T PTZ00258         98 GASEGEGLGNAFLSHI------RAVDGIYHVVRA  125 (390)
T ss_pred             CCcchhHHHHHHHHHH------HHCCEEEEEEeC
Confidence            443322    223333      489999999775

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=2.2e-10  Score=93.55  Aligned_cols=183  Identities=19%  Similarity=0.214  Sum_probs=109.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc---CCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHH---HHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---TFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYH---AIQ  109 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~---~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~---~~~  109 (243)
                      -.++|+.||.||.|||||+..|++.......   ..|........+...-.+  .+++|+||.|++|.-..++.   +.+
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            4699999999999999999999988742211   111111112222222333  37999999999975322211   111


Q ss_pred             --------HHH------HHH---hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          110 --------LIK------RFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       110 --------~~~------~~~---~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                              ++.      +.+   -+...|++||.+......+...+...++.+...      .++|-|+-|+|-.     
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDti-----  189 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTI-----  189 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhh-----
Confidence                    111      111   135789999997776555666666666555543      6899999999865     


Q ss_pred             CHHHHHHhhhHHHHHHHccccCCccc---cc--------cCCCccchhhhcCCCCCCCcCccccccCCCC
Q 026113          173 DYEVFCSKRSEALLKFVSPSTWMKKK---DI--------QGSFVPVVLVENSGRCAKNENDEKVSQLPDN  231 (243)
Q Consensus       173 ~~~~~~~~~~~~l~~~i~~~~~~~~~---~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~  231 (243)
                      +..+..+-+.+.+.++...+.....+   +.        ....+|..++.+....-.+..+-+++|.|-+
T Consensus       190 sK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~vKvgnkmvraRqyPwG  259 (406)
T KOG3859|consen  190 SKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEVKVGNKMVKARQYPWG  259 (406)
T ss_pred             hHHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHhhcCCceeEecchHhhhhhhhhhhhccCCCC
Confidence            34444455567777887776553222   11        1145677777555544444455566666544

>PRK00007 elongation factor G; Reviewed

Probab=99.17  E-value=6.5e-10  Score=104.66  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC---CCcc--ccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG---EKAV--TVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg---~~~~--~~~------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      -.+|+++|..++|||||+|+|+.   ....  .+.            .....|.+.......+.+..+.++||||+.+. 
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-   88 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-   88 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-
Confidence            46999999999999999999973   2110  011            11233444444556788999999999998532 


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+....+      ..+|++++|++... .....+...+..+.+.     ..|.++++||+|+.
T Consensus        89 --~~ev~~al------~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~  140 (693)
T PRK00007         89 --TIEVERSL------RVLDGAVAVFDAVG-GVEPQSETVWRQADKY-----KVPRIAFVNKMDRT  140 (693)
T ss_pred             --HHHHHHHH------HHcCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence              11222222      37899999976543 2445555555554433     26889999999986

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.17  E-value=1.5e-10  Score=102.49  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccccc--------------------------C------CCCCCCeeEEEEeeeCCe
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--------------------------T------FQSEGPRPVMVSRSRAGF   87 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~--------------------------~------~~~~t~~~~~~~~~~~~~   87 (243)
                      ++|+++|..++|||||+++|+...-....                          +      ....|.+.......+.+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            68999999999999999999844211000                          0      011122333344556788


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.++||||..+       +...+...+  ..+|++|+|++.... ......+.+..+ ..++.   +++++|+||+|+.
T Consensus        81 ~~~liDtPGh~~-------f~~~~~~~~--~~aD~allVVda~~G-~~~qt~~~~~~~-~~~~~---~~iivviNK~D~~  146 (406)
T TIGR02034        81 KFIVADTPGHEQ-------YTRNMATGA--STADLAVLLVDARKG-VLEQTRRHSYIA-SLLGI---RHVVLAVNKMDLV  146 (406)
T ss_pred             EEEEEeCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCCC-CccccHHHHHHH-HHcCC---CcEEEEEEecccc
Confidence            999999999732       222222222  489999999776532 222233333222 23332   5799999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00503 prfC peptide chain release factor 3

Probab=99.16  E-value=9.4e-10  Score=100.12  Aligned_cols=115  Identities=11%  Similarity=0.121  Sum_probs=71.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC--cccccCC-------------------CCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTF-------------------QSEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~--~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +..+|+++|..++|||||+++|+...  +...+..                   .+.+.........+.+..+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            56899999999999999999986321  1111000                   01111222345567889999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.+..   .+..+.+      ..+|++|+|++... ........+++.. ..    ...|+++++||+|+.
T Consensus        90 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~-~~----~~~PiivviNKiD~~  145 (527)
T TIGR00503        90 HEDFS---EDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVT-RL----RDTPIFTFMNKLDRD  145 (527)
T ss_pred             hhhHH---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHH-Hh----cCCCEEEEEECcccc
Confidence            95321   2222233      38999999976643 2333333333322 22    136999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.15  E-value=3.9e-10  Score=104.04  Aligned_cols=113  Identities=15%  Similarity=0.190  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccc-----cC---------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTV-----ST---------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEG  100 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~-----~~---------~~~~t~~~~~~~~~~---~~--~~~~viDTPG~~~~  100 (243)
                      -+|+++|..++|||||+++|+.......     ..         ..+.|.........+   ++  ..+.+|||||+.+.
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            5899999999999999999986531110     00         012222222222333   22  57899999999643


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..+    +.+++  ..+|++++|++++.. ........+.....   .  ..|+++|+||+|+.
T Consensus        84 ---~~~----v~~~l--~~aD~aILVvDat~g-~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~  135 (595)
T TIGR01393        84 ---SYE----VSRSL--AACEGALLLVDAAQG-IEAQTLANVYLALE---N--DLEIIPVINKIDLP  135 (595)
T ss_pred             ---HHH----HHHHH--HhCCEEEEEecCCCC-CCHhHHHHHHHHHH---c--CCCEEEEEECcCCC
Confidence               122    22333  388999999776532 22222222211111   1  25899999999984

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.15  E-value=1.3e-09  Score=100.83  Aligned_cols=113  Identities=19%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~~~~-~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      -|.++|..++|||||+++|+|.+..  ......+.|........ ..++..+.+|||||..       .+...+...+  
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~--   72 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV--   72 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh--
Confidence            5889999999999999999986421  11111222322211112 2256789999999983       2222333222  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++.+. .......+.+..+.. ++.   .++++|+||+|+.
T Consensus        73 ~~~D~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv  117 (614)
T PRK10512         73 GGIDHALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV  117 (614)
T ss_pred             hcCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence            48999999987764 234444555544433 332   3578999999985

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.14  E-value=1.3e-09  Score=99.27  Aligned_cols=115  Identities=11%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC--cccccCC------C-------------CCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTF------Q-------------SEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~--~~~~~~~------~-------------~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +..+|+++|..++|||||+++|+...  +...+..      .             +.+.........+.+..+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            46799999999999999999997321  1110000      0             1111222345667889999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+..   .+....+      ..+|++++|++... ........+++... .    ...|+++++||+|+.
T Consensus        89 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~-~----~~iPiiv~iNK~D~~  144 (526)
T PRK00741         89 HEDFS---EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCR-L----RDTPIFTFINKLDRD  144 (526)
T ss_pred             chhhH---HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHH-h----cCCCEEEEEECCccc
Confidence            85432   2222233      37899999976643 23332333332222 2    236999999999974

>PRK13351 elongation factor G; Reviewed

Probab=99.11  E-value=1.3e-09  Score=102.73  Aligned_cols=115  Identities=16%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc--c---------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAV--T---------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~--~---------~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ...+|+++|..|+|||||+++|+...-.  .         ..+      ....|.........+.+..+.+|||||..+.
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            3579999999999999999999853210  0         000      0112223333456678899999999998542


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .   .++...+      ..+|++++|++.... ........+..+...     ..|+++|+||+|+.
T Consensus        87 ~---~~~~~~l------~~aD~~ilVvd~~~~-~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~  138 (687)
T PRK13351         87 T---GEVERSL------RVLDGAVVVFDAVTG-VQPQTETVWRQADRY-----GIPRLIFINKMDRV  138 (687)
T ss_pred             H---HHHHHHH------HhCCEEEEEEeCCCC-CCHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence            1   1222222      388999999776532 233333333333221     36999999999975

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.11  E-value=2.7e-11  Score=88.18  Aligned_cols=121  Identities=15%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCcccccCCCC-CCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        43 llvG~~g~GKSSlin~llg~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +++|.+++|||.|+-.+-.... ..+.+-+ .+.+........++  .++++|||+|+...+...       ..|.  +.
T Consensus         1 mllgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt-------~ayy--rd   70 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT-------HAYY--RD   70 (192)
T ss_pred             CccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh-------Hhhh--cc
Confidence            4789999999998755443321 1122111 12222222233444  479999999995433222       1122  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      +|++|+++++.+....+....|+..+.+.....  ..+++++||+|+.+++.+..+
T Consensus        71 a~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~v~~d  124 (192)
T KOG0083|consen   71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERAVKRD  124 (192)
T ss_pred             cceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhccccc
Confidence            999999999876555677888998888764433  578999999999765554433

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.11  E-value=3.6e-10  Score=96.59  Aligned_cols=82  Identities=18%  Similarity=0.242  Sum_probs=58.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------------CCeEEEEEeCCCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------------AGFTLNIVDTPGL   97 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~viDTPG~   97 (243)
                      |+++|.+++|||||+|+|++... .+..+|.+|..+......+                        ...++.+|||||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            57999999999999999998874 6777777776655433221                        2357999999999


Q ss_pred             CCCCCCc----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113           98 IEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus        98 ~~~~~~~----~~~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                      .......    ..+++.++      ++|++++|+++.
T Consensus        80 v~ga~~~~glg~~fL~~ir------~aD~ii~Vvd~~  110 (318)
T cd01899          80 VPGAHEGKGLGNKFLDDLR------DADALIHVVDAS  110 (318)
T ss_pred             CCCccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence            6443222    23333343      899999998774

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01882 BMS1 Bms1

Probab=99.11  E-value=3.5e-09  Score=86.51  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=69.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc-cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+..|+++|.+|+|||||+|.|++.... ......+    +. ......+..+.++||||..      ....+.+    
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g----~i-~i~~~~~~~i~~vDtPg~~------~~~l~~a----  101 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG----PI-TVVTGKKRRLTFIECPNDI------NAMIDIA----  101 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc----cE-EEEecCCceEEEEeCCchH------HHHHHHH----
Confidence            46788999999999999999999976311 1111111    11 1122367789999999852      2333333    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                        ..+|++++|++... .....+..++..+... |    .| +++|+||+|+.
T Consensus       102 --k~aDvVllviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~  146 (225)
T cd01882         102 --KVADLVLLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLF  146 (225)
T ss_pred             --HhcCEEEEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccC
Confidence              37899999966643 2444555555555432 2    46 45699999986

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.11  E-value=8.9e-10  Score=98.56  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=70.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCc--cc----------------------ccC------CCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKA--VT----------------------VST------FQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~--~~----------------------~~~------~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..++|||||+.+|+...-  ..                      ..+      ....|.+.......+++
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            4679999999999999999998874210  00                      000      11122233334456778


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc------ChhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.++||||..       ++...+...+  ..+|++++|++.+.--+      ....++.+. +...+|.   .++|++
T Consensus        85 ~~i~lIDtPGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~gi---~~iiv~  151 (446)
T PTZ00141         85 YYFTIIDAPGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTLGV---KQMIVC  151 (446)
T ss_pred             eEEEEEECCChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHcCC---CeEEEE
Confidence            899999999974       2222333222  48999999977653211      112222232 2333332   468899


Q ss_pred             EeCCCC
Q 026113          161 LTHAQL  166 (243)
Q Consensus       161 ~tk~D~  166 (243)
                      +||+|.
T Consensus       152 vNKmD~  157 (446)
T PTZ00141        152 INKMDD  157 (446)
T ss_pred             EEcccc
Confidence            999995

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.10  E-value=5.2e-10  Score=94.64  Aligned_cols=66  Identities=21%  Similarity=0.369  Sum_probs=52.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~  106 (243)
                      ..++++++|.+|+||||++|+|++.....++..+++|.......   .+..+.++||||+..+...+++
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK---LGKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE---eCCcEEEEECCCcCCCCCCcHH
Confidence            56899999999999999999999998777777777776544322   2446899999999877655544

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.09  E-value=1.1e-09  Score=100.88  Aligned_cols=114  Identities=15%  Similarity=0.095  Sum_probs=67.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------CC------------eEEEEEeCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------AG------------FTLNIVDTPGLIE   99 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------~~------------~~~~viDTPG~~~   99 (243)
                      ++..|+++|.+++|||||+|+|.+..+..... ...|.+........      .+            ..+.+|||||+.+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            56789999999999999999999876432111 11111100000000      00            1278999999853


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...   .    ..+..  ..+|++++|++++. .........+..+..     ...|+++++||+|+.
T Consensus        84 f~~---~----~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~  136 (586)
T PRK04004         84 FTN---L----RKRGG--ALADIAILVVDINE-GFQPQTIEAINILKR-----RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHH---H----HHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence            311   1    11111  47999999977754 233444444544433     136899999999984

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.08  E-value=1.6e-09  Score=95.99  Aligned_cols=118  Identities=18%  Similarity=0.105  Sum_probs=68.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeE----------------EEEe----e------eCCeE
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPV----------------MVSR----S------RAGFT   88 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~----------------~~~~----~------~~~~~   88 (243)
                      +..++|+++|..++|||||+++|.+.....  .......|....                .+..    .      ..+..
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            357999999999999999999998653210  000000010000                0000    0      12468


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        89 ~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.+|||||..       ++...+....  ..+|++++|++.+.........+.+..+ ..++.   +++++|+||+|+.
T Consensus        82 i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~  147 (406)
T TIGR03680        82 VSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLV  147 (406)
T ss_pred             EEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccC
Confidence            9999999983       2222232222  3789999997776421123333344333 33332   5799999999986

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.07  E-value=8.2e-10  Score=92.96  Aligned_cols=65  Identities=22%  Similarity=0.369  Sum_probs=50.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~  105 (243)
                      ..++++++|.+|+||||++|+|++.....++..+++|...+....   +..+.++||||+..+...+.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~  181 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ  181 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence            468999999999999999999999887677777777765543322   34689999999976654443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.07  E-value=6.4e-09  Score=80.18  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=74.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc----CCCC-----CCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----TFQS-----EGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~----~~~~-----~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~  106 (243)
                      ....||+++|..++||||++.++.......+.    ....     +|...-.......+ ..+.++||||+        +
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq--------~   79 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ--------E   79 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc--------H
Confidence            35789999999999999999999977532221    1111     11111112233444 78999999999        4


Q ss_pred             HHHHHHHHHhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          107 AIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       107 ~~~~~~~~~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++.+.+.++ .++...+++  +|+++ .+..+..++..+.....    .|++|..||.|+.
T Consensus        80 RF~fm~~~l~-~ga~gaivl--VDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~  134 (187)
T COG2229          80 RFKFMWEILS-RGAVGAIVL--VDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLF  134 (187)
T ss_pred             HHHHHHHHHh-CCcceEEEE--EecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccC
Confidence            4555555444 467777777  44433 33355666666665533    6999999999996

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.07  E-value=6e-10  Score=85.69  Aligned_cols=58  Identities=26%  Similarity=0.440  Sum_probs=46.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   97 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~   97 (243)
                      ....+++++|.+|+||||++|+|++.....++..+++|........   +..+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence            3678999999999999999999999876667777777766554332   356999999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=99.05  E-value=2.8e-10  Score=90.52  Aligned_cols=70  Identities=24%  Similarity=0.393  Sum_probs=46.9

Q ss_pred             HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCc--------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKA--------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +.++.+.+......+.+++++|.+|+|||||+|+|++...        ..++..+++|........   +..+.+|||||
T Consensus       113 i~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~~~DtPG  189 (190)
T cd01855         113 VEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL---GNGKKLYDTPG  189 (190)
T ss_pred             HHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec---CCCCEEEeCcC
Confidence            3334444443333567999999999999999999998643        234455555555444333   22589999999


Q ss_pred             C
Q 026113           97 L   97 (243)
Q Consensus        97 ~   97 (243)
                      +
T Consensus       190 ~  190 (190)
T cd01855         190 I  190 (190)
T ss_pred             C
Confidence            6

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.05  E-value=1.3e-09  Score=95.95  Aligned_cols=85  Identities=20%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee------------------------eCCeEEEEEeC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------------RAGFTLNIVDT   94 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~viDT   94 (243)
                      +++|+++|.+|+|||||+|+|++... .+..++.+|..+......                        ....+++++||
T Consensus         1 ~~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          1 MITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            36899999999999999999998874 556777777666553322                        11246899999


Q ss_pred             CCCCCCCCCc----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113           95 PGLIEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus        95 PG~~~~~~~~----~~~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                      ||+.......    ..+++.++      ++|++++|++..
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir------~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLR------QADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence            9986543222    23333443      899999998763

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.05  E-value=5.2e-09  Score=78.16  Aligned_cols=125  Identities=15%  Similarity=0.186  Sum_probs=76.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-CCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSII-GEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIK  112 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~ll-g~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~  112 (243)
                      .+..|++++|.-++|||+++..++ |..+ .......+-.+......+.   ....+.+.||.|+.+....-      =+
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~-~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL------pr   79 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHV-PGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL------PR   79 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCC-CCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh------hH
Confidence            467999999999999999998877 4443 2222222222233322222   22479999999997652211      12


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHh---cccccccEEEEEeCCCCCCCCCCCH
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF---GEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~---~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      .|+  .-+|++++|++.....    ..+.++.+++..   ....-.|++++.|++|+.++...+.
T Consensus        80 hy~--q~aDafVLVYs~~d~e----Sf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~  138 (198)
T KOG3883|consen   80 HYF--QFADAFVLVYSPMDPE----SFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM  138 (198)
T ss_pred             hHh--ccCceEEEEecCCCHH----HHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence            333  3789999998775432    233333333332   2223369999999999976655443

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.03  E-value=2.9e-09  Score=98.40  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc--------c------CCCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTV--------S------TFQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIE   99 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~--------~------~~~~~t~~~~~~~~~~~-----~~~~~viDTPG~~~   99 (243)
                      --+|+++|..++|||||+.+|+...-...        .      ...+.|.........+.     +..+.+|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            45899999999999999999986421100        0      00122222222223332     46799999999964


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..   .+    +.+++  ..+|++|+|++.... ........+...   ...  ..|+++|+||+|+.
T Consensus        87 F~---~~----v~~sl--~~aD~aILVVDas~g-v~~qt~~~~~~~---~~~--~lpiIvViNKiDl~  139 (600)
T PRK05433         87 FS---YE----VSRSL--AACEGALLVVDASQG-VEAQTLANVYLA---LEN--DLEIIPVLNKIDLP  139 (600)
T ss_pred             HH---HH----HHHHH--HHCCEEEEEEECCCC-CCHHHHHHHHHH---HHC--CCCEEEEEECCCCC
Confidence            32   22    22333  378999999776531 222222222222   111  25899999999984

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.03  E-value=1.7e-09  Score=95.98  Aligned_cols=121  Identities=17%  Similarity=0.097  Sum_probs=68.0

Q ss_pred             hcCCCceEEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEE----------------EEee--e---C-----
Q 026113           34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVM----------------VSRS--R---A-----   85 (243)
Q Consensus        34 ~~~~~~~~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~----------------~~~~--~---~-----   85 (243)
                      ++.+..++|+++|..++|||||+.+|.+....  ........|.....                +...  .   .     
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            34457799999999999999999999764210  00000111111100                0000  0   0     


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      ...+.+|||||..       .+...+...  ...+|++++|+++............+..+. ..+.   .++++|+||+|
T Consensus        84 ~~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~i---~~iiVVlNK~D  150 (411)
T PRK04000         84 LRRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALD-IIGI---KNIVIVQNKID  150 (411)
T ss_pred             ccEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCC---CcEEEEEEeec
Confidence            2579999999973       222222211  147899999977753211233333443332 2221   47999999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      +.
T Consensus       151 l~  152 (411)
T PRK04000        151 LV  152 (411)
T ss_pred             cc
Confidence            86

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.2e-09  Score=95.33  Aligned_cols=118  Identities=16%  Similarity=0.235  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE--------------------------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM--------------------------------------   79 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~--------------------------------------   79 (243)
                      ...||++.|++++||||++|+++..++-+.+..+.+..-+..                                      
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            678999999999999999999998865443322211110000                                      


Q ss_pred             ----EEeeeC-C------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHH
Q 026113           80 ----VSRSRA-G------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN  148 (243)
Q Consensus        80 ----~~~~~~-~------~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~  148 (243)
                          ....+. +      ..+.++|.||+.-+...+.    .+-+++  ..+|++++|...++ .++..+++++....+.
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~ts----wid~~c--ldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~  260 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTS----WIDSFC--LDADVFVLVVNAEN-TLTLSEKQFFHKVSEE  260 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhH----HHHHHh--hcCCeEEEEecCcc-HhHHHHHHHHHHhhcc
Confidence                000111 1      1488999999965443332    233333  48999999966654 5888888888777665


Q ss_pred             hcccccccEEEEEeCCCCC
Q 026113          149 FGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       149 ~~~~~~~~~ivV~tk~D~~  167 (243)
                           ..++.|+.||||..
T Consensus       261 -----KpniFIlnnkwDas  274 (749)
T KOG0448|consen  261 -----KPNIFILNNKWDAS  274 (749)
T ss_pred             -----CCcEEEEechhhhh
Confidence                 35788889999986

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.01  E-value=6.7e-09  Score=98.21  Aligned_cols=115  Identities=13%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc---------ccCC------CCCCCeeE----EEEeeeCCeEEEEEeCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------VSTF------QSEGPRPV----MVSRSRAGFTLNIVDTPGLI   98 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~---------~~~~------~~~t~~~~----~~~~~~~~~~~~viDTPG~~   98 (243)
                      .-.+|+++|..++|||||+++|+...-..         ..+.      ...|....    .....+.+..+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            45799999999999999999997431000         0010      11121111    12245667889999999997


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +..   .+....+      ..+|++|+|++... .........++...+   .  ..|.++|+||+|..
T Consensus        98 ~f~---~~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~---~--~~p~ivviNKiD~~  151 (720)
T TIGR00490        98 DFG---GDVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALK---E--NVKPVLFINKVDRL  151 (720)
T ss_pred             ccH---HHHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHH---c--CCCEEEEEEChhcc
Confidence            532   2333333      38899999977643 123333333333222   1  25788999999975

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00416 elongation factor 2; Provisional

Probab=99.01  E-value=5.7e-09  Score=100.00  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---------------CCCCeeEEEEeeeC----------CeEEEEE
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ---------------SEGPRPVMVSRSRA----------GFTLNIV   92 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~---------------~~t~~~~~~~~~~~----------~~~~~vi   92 (243)
                      +-.+|+++|..++|||||+++|+...-.......               +.|.........+.          +..+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            4569999999999999999999964321110000               01111111122232          5579999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        93 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ||||..+.       ...+...+  ..+|++++|++... .........++.+...     ..|+++++||+|+.
T Consensus        98 DtPG~~~f-------~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDF-------SSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQE-----RIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhH-------HHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence            99999542       22222222  48999999977643 2444444444444332     26999999999984

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.00  E-value=1.3e-09  Score=82.59  Aligned_cols=56  Identities=34%  Similarity=0.481  Sum_probs=42.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI   98 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~   98 (243)
                      -+++++|.+|+||||++|++++.....++..++.|.......  .+ ..+.+|||||+.
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~DtpG~~  139 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LT-PTITLCDCPGLV  139 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE--eC-CCEEEEECCCcC
Confidence            389999999999999999999988655655555555443322  22 268999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=2.4e-09  Score=82.54  Aligned_cols=125  Identities=15%  Similarity=0.188  Sum_probs=80.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.++.+|+++|-.||||||+++.+--.++..+  .|  |.........+.+..+.+||.-|+...+.       ..+.|+
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt--vP--TiGfnVE~v~ykn~~f~vWDvGGq~k~R~-------lW~~Y~   82 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--VP--TIGFNVETVEYKNISFTVWDVGGQEKLRP-------LWKHYF   82 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC--CC--ccccceeEEEEcceEEEEEecCCCccccc-------chhhhc
Confidence            45789999999999999999998776654333  23  44445566677899999999999943322       122233


Q ss_pred             hcCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113          116 LNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus       116 ~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                        .+.++++||++- |..|+.+...+....+...-  -...|+++..||.|+.  +..+..+.
T Consensus        83 --~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~--~als~~ei  139 (181)
T KOG0070|consen   83 --QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLP--GALSAAEI  139 (181)
T ss_pred             --cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhcc--ccCCHHHH
Confidence              488999999543 33334332222222222221  1236999999999984  55554433

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.97  E-value=2.9e-09  Score=91.38  Aligned_cols=75  Identities=24%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             HHHHhhhhcC--CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 026113           27 ELLGKLKQEN--VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN  104 (243)
Q Consensus        27 ~~~~~~~~~~--~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~  104 (243)
                      +.++.+.+.+  ....+++++|.+|+||||+||+|+|...+.++..|+.|...+....   +..+.++||||+.-....+
T Consensus       118 ~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~~~  194 (322)
T COG1161         118 EKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             HHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCCccc
Confidence            4445555443  3458999999999999999999999998888999987765444332   2348999999998666555

>cd01856 YlqF YlqF

Probab=98.97  E-value=3.3e-09  Score=82.92  Aligned_cols=58  Identities=26%  Similarity=0.396  Sum_probs=44.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI   98 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~   98 (243)
                      ..++++++|.+|+||||++|++++.....++..+++|.....+...   ..+.+|||||+.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~  171 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL  171 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence            4579999999999999999999998765566666666554443332   568999999973

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.96  E-value=1e-08  Score=91.70  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc--------------c----------ccC------CCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV--------------T----------VST------FQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..++|||||+-+|+...-.              .          ..+      ....|.+.......+.+
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            46799999999999999999888732100              0          000      01122233334455678


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC------hhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      +.+.++||||..       ++...+...+  ..+|+.++|++.+...+.      ..-++.+ .+....|.   .++|++
T Consensus        85 ~~i~liDtPGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~-~~~~~~gi---~~iIV~  151 (447)
T PLN00043         85 YYCTVIDAPGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHA-LLAFTLGV---KQMICC  151 (447)
T ss_pred             EEEEEEECCCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHH-HHHHHcCC---CcEEEE
Confidence            899999999983       3333444333  489999999777542121      1112222 22223332   468999


Q ss_pred             EeCCCCC
Q 026113          161 LTHAQLS  167 (243)
Q Consensus       161 ~tk~D~~  167 (243)
                      +||+|+.
T Consensus       152 vNKmD~~  158 (447)
T PLN00043        152 CNKMDAT  158 (447)
T ss_pred             EEcccCC
Confidence            9999974

>cd01859 MJ1464 MJ1464

Probab=98.93  E-value=5.4e-09  Score=80.36  Aligned_cols=72  Identities=22%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113           23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   97 (243)
Q Consensus        23 ~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~   97 (243)
                      ..|.+.+....+......+++++|.+|+||||++|.+.+.....++..++.|....   ....+..+.+|||||+
T Consensus        85 ~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~DtpGi  156 (156)
T cd01859          85 KILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ---LVKITSKIYLLDTPGV  156 (156)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE---EEEcCCCEEEEECcCC
Confidence            33444443333333457899999999999999999999876544444444433222   1122346899999996

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.93  E-value=1.5e-08  Score=75.22  Aligned_cols=116  Identities=12%  Similarity=0.120  Sum_probs=72.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      .++.+.++|-.++||||++|.+..... ...-.|  |.....+..+.....+.+||.||+...   .     .+.++++ 
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~-~edmip--tvGfnmrk~tkgnvtiklwD~gGq~rf---r-----smWeryc-   86 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQY-LEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRF---R-----SMWERYC-   86 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccc-hhhhcc--cccceeEEeccCceEEEEEecCCCccH---H-----HHHHHHh-
Confidence            579999999999999999998875331 111112  333445556667779999999999422   2     2222222 


Q ss_pred             CCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++.++|+||++.... ..+....+....+.+. . -...|+++++||.|+.
T Consensus        87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~-~-l~gip~LVLGnK~d~~  135 (186)
T KOG0075|consen   87 RGVSAIVYVVDAADPDKLEASRSELHDLLDKP-S-LTGIPLLVLGNKIDLP  135 (186)
T ss_pred             hcCcEEEEEeecCCcccchhhHHHHHHHhcch-h-hcCCcEEEecccccCc
Confidence            599999999665322 2333222222222221 1 1237999999999974

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.92  E-value=1e-07  Score=77.78  Aligned_cols=102  Identities=19%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC-Ccccc-cCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCc-H--HHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE-KAVTV-STFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVN-Y--HAIQ  109 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~-~~~~~-~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~-~--~~~~  109 (243)
                      +-.-|.++|.+++|||+|+|.|+|. ..+.+ ....++|..........   .+..+.++||||+.+..... .  ..+.
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            4567899999999999999999998 23333 33345555444444333   35789999999998776543 1  1111


Q ss_pred             HHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHH
Q 026113          110 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT  146 (243)
Q Consensus       110 ~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~  146 (243)
                      .+.    .--.+++||....+   ....+...+..+.
T Consensus        86 ~l~----~llss~~i~n~~~~---~~~~~~~~l~~~~  115 (224)
T cd01851          86 ALA----TLLSSVLIYNSWET---ILGDDLAALMGLL  115 (224)
T ss_pred             HHH----HHHhCEEEEeccCc---ccHHHHHHHHHHH
Confidence            111    11367888884332   2344444444443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=8.8e-10  Score=82.74  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCe----eEEEEee-------eCCeEEEEEeCCCCCCCCCCcHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR----PVMVSRS-------RAGFTLNIVDTPGLIEGGYVNYHAI  108 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~----~~~~~~~-------~~~~~~~viDTPG~~~~~~~~~~~~  108 (243)
                      ++.+.+|.+|+||||++...+.... ...-....+.+    ...+...       .....+++|||+|+..        +
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F-~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER--------F   80 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKF-NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER--------F   80 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcc-cceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH--------H
Confidence            4678899999999999988776542 11100001111    1111111       1123699999999943        3


Q ss_pred             HHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHh-cccccccEEEEEeCCCCCCCCCCC
Q 026113          109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF-GEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       109 ~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~-~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      +.+...+. +.+-.+|+++++.+....-..+.|+..++... .++  .-+++++||+|+.+.+.++
T Consensus        81 RSLTTAFf-RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~R~Vs  143 (219)
T KOG0081|consen   81 RSLTTAFF-RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQRVVS  143 (219)
T ss_pred             HHHHHHHH-HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhhhhhh
Confidence            33322111 47788999988866544445677777776543 232  3699999999997554443

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.90  E-value=2.6e-08  Score=73.51  Aligned_cols=126  Identities=17%  Similarity=0.221  Sum_probs=79.0

Q ss_pred             HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcH
Q 026113           27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~  105 (243)
                      .++.........++||+++|-.++||||++..|.+.++....+    |.........+.| ..+.+||.-|+   +....
T Consensus         5 til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGq---r~IRp   77 (185)
T KOG0074|consen    5 TILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQ---RGIRP   77 (185)
T ss_pred             HHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCc---cccch
Confidence            3444555555688999999999999999999999998543332    2233334455555 79999998887   33333


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccCh-hHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                          +..+|+  .+.|.++||++-....+.+ ......+.+.+.  +-...|+.+-.||.|+.
T Consensus        78 ----yWsNYy--envd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdll  132 (185)
T KOG0074|consen   78 ----YWSNYY--ENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLL  132 (185)
T ss_pred             ----hhhhhh--hccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHH
Confidence                333343  3899999996642222222 222222222221  11236888888888875

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=3.6e-08  Score=72.65  Aligned_cols=116  Identities=19%  Similarity=0.248  Sum_probs=73.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++.+|+++|-+++||||++..+.-...  +...|  |........++.+..+.+||.-|+.       .+....++|+ 
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~--~~~ip--TvGFnvetVtykN~kfNvwdvGGqd-------~iRplWrhYy-   82 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQD-------KIRPLWRHYY-   82 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC--ccccc--ccceeEEEEEeeeeEEeeeeccCch-------hhhHHHHhhc-
Confidence            4689999999999999999988775442  22222  3334455667888999999999984       2333455555 


Q ss_pred             cCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ++..++|+|++. +..++.+...+....+.+.  +-...++++..||-|+.
T Consensus        83 -~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~--em~~~~~LvlANkQDlp  131 (180)
T KOG0071|consen   83 -TGTQGLIFVVDSADRDRIEEARNELHRIINDR--EMRDAIILILANKQDLP  131 (180)
T ss_pred             -cCCceEEEEEeccchhhHHHHHHHHHHHhCCH--hhhcceEEEEecCcccc
Confidence             588899999543 3222222222222222211  11124788899999985

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.86  E-value=1.4e-08  Score=88.66  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=55.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIK  112 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~-~~~~~  112 (243)
                      ..+++++|.+|+|||||+|+|++..     ...++..|++|.......  . +..+.++||||+.........+ .+.++
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            3699999999999999999999853     245666777666544332  2 2346799999997653222111 11222


Q ss_pred             HHHhcCCCcEEEEEEeCC
Q 026113          113 RFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d  130 (243)
                      ..........+.+..+..
T Consensus       231 ~~~~~~~i~~~~~~l~~~  248 (360)
T TIGR03597       231 YITPKKEIKPKTYQLNPN  248 (360)
T ss_pred             hcCCCCccCceEEEeCCC
Confidence            222334566677774443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12740 elongation factor G; Reviewed

Probab=98.84  E-value=5.8e-08  Score=91.40  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             EcCCCCcHHHHHHHHhCCCccccc-----------C------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           45 MGKGGVGKSSTVNSIIGEKAVTVS-----------T------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        45 vG~~g~GKSSlin~llg~~~~~~~-----------~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      +|..++|||||+++|+...-....           +      ....|.........+.+..+.+|||||..+.   ..++
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~---~~~~   77 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF---TGEV   77 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH---HHHH
Confidence            589999999999999644321100           0      0112223333456678899999999998531   1222


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...+      ..+|++++|++... .........+..+...     ..|+++|+||+|..
T Consensus        78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~  125 (668)
T PRK12740         78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-----GVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence            2222      37899999977653 2333333333333321     36999999999975

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.84  E-value=7.5e-08  Score=92.54  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=68.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC---------------CCCCCeeEEEEeee----------------C
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSR----------------A   85 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~---------------~~~t~~~~~~~~~~----------------~   85 (243)
                      .+-.+|+++|..++|||||+++|+...-......               ...|.........+                .
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            3567999999999999999999985432110000               01111111112222                2


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.++||||..|       ....+...+  ..+|+.|+|++... .........++.....     ..|+++++||+|
T Consensus        97 ~~~inliDtPGh~d-------F~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D  161 (843)
T PLN00116         97 EYLINLIDSPGHVD-------FSSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTVNKMD  161 (843)
T ss_pred             ceEEEEECCCCHHH-------HHHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHC-----CCCEEEEEECCc
Confidence            56789999999943       222222222  47899999977643 2333333333333222     269999999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       162 ~~  163 (843)
T PLN00116        162 RC  163 (843)
T ss_pred             cc
Confidence            75

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.83  E-value=1.6e-08  Score=73.09  Aligned_cols=101  Identities=21%  Similarity=0.247  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      ||+++|..|+|||||.+++-|...-.     ..|+     ..++.+.  -.|||||-+-   ..+.+...+..  ....+
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQ-----Ave~~d~--~~IDTPGEy~---~~~~~Y~aL~t--t~~da   65 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQ-----AVEFNDK--GDIDTPGEYF---EHPRWYHALIT--TLQDA   65 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh-----cccc-----eeeccCc--cccCCchhhh---hhhHHHHHHHH--Hhhcc
Confidence            79999999999999999999987421     1111     1222221  1499999631   12222222221  22589


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +++++|..++...     .    .+...|-.-..+++|-|+||+|+.
T Consensus        66 dvi~~v~~and~~-----s----~f~p~f~~~~~k~vIgvVTK~DLa  103 (148)
T COG4917          66 DVIIYVHAANDPE-----S----RFPPGFLDIGVKKVIGVVTKADLA  103 (148)
T ss_pred             ceeeeeecccCcc-----c----cCCcccccccccceEEEEeccccc
Confidence            9999998775421     0    111222222236799999999996

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.83  E-value=3.6e-09  Score=81.22  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      -.++++|.+|||||||+|+|++.....+...       ..+|.....+..   .....||||||+.+....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--GC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCccccc
Confidence            5889999999999999999999854333222       122222222222   224679999999766543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.2e-08  Score=86.30  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=71.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc-c-----------------------cc------CCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV-T-----------------------VS------TFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~-~-----------------------~~------~~~~~t~~~~~~~~~~~~   86 (243)
                      +..++++++|...+|||||+-.|+-.--. .                       +-      ...+.|.+......+.+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            46799999999999999999888732100 0                       00      001112222223344556


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ChhHHHHHHHHHHHhcccccccEEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-----DNLDKQITRAITDNFGEQIWKRALIVL  161 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~-----~~~~~~~l~~l~~~~~~~~~~~~ivV~  161 (243)
                      ..+.|+|+||.-|       ....+-.  ....+|+-++|++.....+     ...+.+-.-.+....|.   .++|+++
T Consensus        85 ~~~tIiDaPGHrd-------FvknmIt--GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi---~~lIVav  152 (428)
T COG5256          85 YNFTIIDAPGHRD-------FVKNMIT--GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI---KQLIVAV  152 (428)
T ss_pred             ceEEEeeCCchHH-------HHHHhhc--chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC---ceEEEEE
Confidence            6899999999621       1111211  1247899999977643311     12233333355666664   6899999


Q ss_pred             eCCCCCC
Q 026113          162 THAQLSL  168 (243)
Q Consensus       162 tk~D~~~  168 (243)
                      ||+|+.+
T Consensus       153 NKMD~v~  159 (428)
T COG5256         153 NKMDLVS  159 (428)
T ss_pred             Ecccccc
Confidence            9999864

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.82  E-value=4.7e-09  Score=80.39  Aligned_cols=122  Identities=14%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++++++|..++||||+|.+++..- +......+...+....+..+  .+..+.+|||+|+.+.+.       ..+.|.
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa-------ItkAyy   90 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA-------ITKAYY   90 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH-------HHHHHh
Confidence            45899999999999999999998543 22222222222222222222  334677999999953321       112222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                        +++.+.++|++-...-..+.-..|.+.+....+.   .|+++|-||+|+.+....
T Consensus        91 --rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlveds~~  142 (246)
T KOG4252|consen   91 --RGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVEDSQM  142 (246)
T ss_pred             --ccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHhhhc
Confidence              4888888887764322334556666667666654   799999999999754433

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.82  E-value=9.2e-08  Score=90.77  Aligned_cols=115  Identities=13%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc---------CC------CCCCCeeEEEEeee----CCeEEEEEeCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---------TF------QSEGPRPVMVSRSR----AGFTLNIVDTPGLI   98 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~---------~~------~~~t~~~~~~~~~~----~~~~~~viDTPG~~   98 (243)
                      +-.+|+++|..++|||||+.+|+...-....         +.      ...|.........+    .+..+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            4568999999999999999999854211100         00      00111111111222    35679999999997


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.   ..+....+      ..+|++++|++... .........+....+. +    .|.|+++||+|..
T Consensus        99 df---~~~~~~~l------~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DF---GGDVTRAM------RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL  152 (731)
T ss_pred             Ch---HHHHHHHH------HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence            63   22333333      37899999976543 2333334444332221 2    4779999999975

>PRK12289 GTPase RsgA; Reviewed

Probab=98.81  E-value=9.9e-09  Score=88.85  Aligned_cols=59  Identities=27%  Similarity=0.399  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      .++++|.+|+|||||+|+|++.....++..+.       +|.....+... .|  ..|+||||+.....
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~l  239 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPDL  239 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC--cEEEeCCCcccccc
Confidence            48999999999999999999876555544443       34443333222 22  37999999976554

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=3.7e-08  Score=74.64  Aligned_cols=116  Identities=17%  Similarity=0.231  Sum_probs=79.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +++-|++++|-.|+|||||++.+-..+.....+    |.+++.......+..++.+|.-|..       .+.+..++|+ 
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf-   85 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF-   85 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH-
Confidence            367899999999999999999988776543222    4445555677889999999988873       4455556666 


Q ss_pred             cCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       +.+|++++.+++ |..++.+ .+.-++.+...- .-.+.|+++++||+|..
T Consensus        86 -~~v~~iv~lvda~d~er~~e-s~~eld~ll~~e-~la~vp~lilgnKId~p  134 (193)
T KOG0077|consen   86 -PQVDAIVYLVDAYDQERFAE-SKKELDALLSDE-SLATVPFLILGNKIDIP  134 (193)
T ss_pred             -hhhceeEeeeehhhHHHhHH-HHHHHHHHHhHH-HHhcCcceeecccccCC
Confidence             588999998665 4333433 333333332221 12457999999999974

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.80  E-value=3.4e-08  Score=82.60  Aligned_cols=127  Identities=16%  Similarity=0.185  Sum_probs=80.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+..-|.+||.||+|||||+++|++..+.+.... ..|-+++.... -..|..+.+.||-||..  ...-.....++..+
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drL-FATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-FATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQATL  252 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchh-heeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHHH
Confidence            3557899999999999999999997765443332 23444444333 24678899999999963  33334444444333


Q ss_pred             hc-CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc---cccccEEEEEeCCCCC
Q 026113          116 LN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~---~~~~~~ivV~tk~D~~  167 (243)
                      .+ ..+|++|.|.++............+..+.+. |-   .....+|=|-||.|..
T Consensus       253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccc
Confidence            21 4899999997765433333334445555443 31   2235688899999874

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.79  E-value=6.3e-08  Score=79.46  Aligned_cols=122  Identities=21%  Similarity=0.288  Sum_probs=75.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~---~~~~~~~~~~~  114 (243)
                      ++.+++++|.+|+|||||+|.++......-...+ .+..++....-.-|..+.++|.||++.....   ..++-.....|
T Consensus       135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y  213 (320)
T KOG2486|consen  135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-KNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY  213 (320)
T ss_pred             CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-CCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence            4589999999999999999999977532211111 1222223333345778999999997654332   23444555556


Q ss_pred             HhcC--CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNK--TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~--~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.++  -..++|++. .+ ..+...|...+.++.+.     ..|..+|+||||..
T Consensus       214 ~leR~nLv~~FLLvd-~s-v~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~  261 (320)
T KOG2486|consen  214 LLERENLVRVFLLVD-AS-VPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQ  261 (320)
T ss_pred             HHhhhhhheeeeeee-cc-CCCCCCChHHHHHHhhc-----CCCeEEeeehhhhh
Confidence            5432  344555552 11 12455566666555543     27999999999964

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.78  E-value=1.4e-07  Score=83.40  Aligned_cols=119  Identities=20%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCC-----------CC-Ce-eEEEEe-e--------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQS-----------EG-PR-PVMVSR-S--------------   83 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~-----------~t-~~-~~~~~~-~--------------   83 (243)
                      .+..|+++|.+|+||||++..|.      |.++..+..-+.           .. .. +..... .              
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            46789999999999999998886      544332221100           00 00 101000 0              


Q ss_pred             -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           84 -RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        84 -~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                       ..+..+.||||||..   ..+....+++.+......|+.+++|  +|.. ..+......+.+.+..     .+.-+|+|
T Consensus       179 ~~~~~DvViIDTaGr~---~~d~~lm~El~~i~~~~~p~e~lLV--lda~-~Gq~a~~~a~~F~~~~-----~~~g~IlT  247 (429)
T TIGR01425       179 KKENFDIIIVDTSGRH---KQEDSLFEEMLQVAEAIQPDNIIFV--MDGS-IGQAAEAQAKAFKDSV-----DVGSVIIT  247 (429)
T ss_pred             HhCCCCEEEEECCCCC---cchHHHHHHHHHHhhhcCCcEEEEE--eccc-cChhHHHHHHHHHhcc-----CCcEEEEE
Confidence             025689999999973   3445566677766555678999999  4432 2333444455554432     47889999


Q ss_pred             CCCCC
Q 026113          163 HAQLS  167 (243)
Q Consensus       163 k~D~~  167 (243)
                      |.|..
T Consensus       248 KlD~~  252 (429)
T TIGR01425       248 KLDGH  252 (429)
T ss_pred             CccCC
Confidence            99874

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.77  E-value=2.3e-08  Score=86.51  Aligned_cols=59  Identities=27%  Similarity=0.487  Sum_probs=39.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      .++++|.+|+|||||+|+|++.....++..+.       +|.....+.... |  ..|+||||+-+...
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~--~~liDTPGir~~~l  272 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-G--GDLIDSPGVREFGL  272 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-C--CEEEECCCCCcccC
Confidence            47899999999999999999987555544432       222222222211 2  35999999976654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.77  E-value=3.1e-07  Score=78.88  Aligned_cols=35  Identities=37%  Similarity=0.451  Sum_probs=27.9

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ..+++.+.+....++.|.+.|.+|+|||||++.+.
T Consensus        43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~   77 (332)
T PRK09435         43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALG   77 (332)
T ss_pred             HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHH
Confidence            44556665545578999999999999999998865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.76  E-value=2.2e-08  Score=82.83  Aligned_cols=59  Identities=29%  Similarity=0.340  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      ..++++|.+|+|||||+|+|++.....++..       ..+|.....+..  .+  -.++||||+.....
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l  186 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGL  186 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCC
Confidence            4789999999999999999998754333322       224444433333  22  37999999976543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=7.5e-08  Score=82.41  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=65.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------CCeEEEEEeCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEG  100 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~viDTPG~~~~  100 (243)
                      .+++.+||.+|+|||||.|+++... +....+|.+|.++......+                  -..++.++|.+|+-.+
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            4789999999999999999999888 57788999988876543321                  1125899999998754


Q ss_pred             C----CCcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113          101 G----YVNYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus       101 ~----~~~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      .    ....+.+..+|      .+|+|+.|++.
T Consensus        81 As~GeGLGNkFL~~IR------evdaI~hVVr~  107 (372)
T COG0012          81 ASKGEGLGNKFLDNIR------EVDAIIHVVRC  107 (372)
T ss_pred             cccCCCcchHHHHhhh------hcCeEEEEEEe
Confidence            3    34557788886      89999999754

>PRK13768 GTPase; Provisional

Probab=98.70  E-value=9.8e-08  Score=79.33  Aligned_cols=81  Identities=16%  Similarity=0.041  Sum_probs=44.6

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+|||||..+....... ...+.+.+....+++++++++... ..+..+.....++....-.....|+++|+||+|+
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~-~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRES-GRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHH-HHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            36999999998654322222 222333332223899999955432 1233343333333211111234799999999998


Q ss_pred             CCC
Q 026113          167 SLP  169 (243)
Q Consensus       167 ~~~  169 (243)
                      ...
T Consensus       175 ~~~  177 (253)
T PRK13768        175 LSE  177 (253)
T ss_pred             cCc
Confidence            643

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.70  E-value=1.5e-07  Score=93.37  Aligned_cols=123  Identities=18%  Similarity=0.171  Sum_probs=71.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccC---CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC----CcH-H---HHHH
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY----VNY-H---AIQL  110 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~----~~~-~---~~~~  110 (243)
                      .+++|.+|+||||+++.. |........   ....+.........|-.....++||+|.+-...    .+. .   .+..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~  192 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL  192 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence            588999999999999874 554321111   000011111111223344567999999653332    121 2   2333


Q ss_pred             HHHHHhcCCCcEEEEEEeCCCcc-cCh--------hHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          111 IKRFLLNKTIDVLLYVDRLDVYR-VDN--------LDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       111 ~~~~~~~~~~~~il~v~~~d~~~-~~~--------~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++++.....+|+||++++++..- .++        ..+..+..+.+.+|-.  .|+.+|+||+|+.
T Consensus       193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL  256 (1169)
T ss_pred             HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence            44444456899999998765321 111        2244466677777765  5999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.69  E-value=3.4e-08  Score=79.90  Aligned_cols=103  Identities=21%  Similarity=0.354  Sum_probs=75.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~  113 (243)
                      ...|++++|-+.+|||||+..|+.... ....+..+|.+|......++|-+++++|.||+.++....    +++...   
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav---  136 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV---  136 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE---
Confidence            346999999999999999999998763 344556677778888889999999999999987654332    222222   


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG  150 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~  150 (243)
                         ...+|+||+|  +|.. -.+..+..++.-.+..|
T Consensus       137 ---ArtaDlilMv--LDat-k~e~qr~~le~ELe~vG  167 (364)
T KOG1486|consen  137 ---ARTADLILMV--LDAT-KSEDQREILEKELEAVG  167 (364)
T ss_pred             ---eecccEEEEE--ecCC-cchhHHHHHHHHHHHhc
Confidence               2589999999  5542 33556666666555555

>PRK13796 GTPase YqeH; Provisional

Probab=98.69  E-value=4.6e-08  Score=85.50  Aligned_cols=59  Identities=31%  Similarity=0.401  Sum_probs=42.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ..++.++|.+|+|||||+|+|++..     ...++..|++|........  + ....++||||+...
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~~~  223 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGIIHR  223 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-CCcEEEECCCcccc
Confidence            4689999999999999999999642     3346677777766544332  2 22579999999643

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.4e-07  Score=79.79  Aligned_cols=128  Identities=15%  Similarity=0.101  Sum_probs=79.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------C-------------------------CCCCCCeeEEEEeee
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS-------T-------------------------FQSEGPRPVMVSRSR   84 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~-------~-------------------------~~~~t~~~~~~~~~~   84 (243)
                      +..+|.+-.|..--||||||-.|+......-.       .                         ..+.|.+..+.....
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            46799999999999999999999965321100       0                         011122222223334


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      ..+++.|.||||..       ++.+.|..-  ...+|+.++++  |...--.++.+-...+..++|-   +++++.+||+
T Consensus        84 ~KRkFIiADTPGHe-------QYTRNMaTG--ASTadlAIlLV--DAR~Gvl~QTrRHs~I~sLLGI---rhvvvAVNKm  149 (431)
T COG2895          84 EKRKFIIADTPGHE-------QYTRNMATG--ASTADLAILLV--DARKGVLEQTRRHSFIASLLGI---RHVVVAVNKM  149 (431)
T ss_pred             ccceEEEecCCcHH-------HHhhhhhcc--cccccEEEEEE--ecchhhHHHhHHHHHHHHHhCC---cEEEEEEeee
Confidence            67899999999983       322233311  23678888884  4423223344445567777775   7999999999


Q ss_pred             CCCCCCCCCHHHHH
Q 026113          165 QLSLPDRLDYEVFC  178 (243)
Q Consensus       165 D~~~~~~~~~~~~~  178 (243)
                      ||.+-++..+++..
T Consensus       150 DLvdy~e~~F~~I~  163 (431)
T COG2895         150 DLVDYSEEVFEAIV  163 (431)
T ss_pred             cccccCHHHHHHHH
Confidence            99755544444443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.64  E-value=3.8e-07  Score=81.78  Aligned_cols=118  Identities=19%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC--CCCCCCe----------------eEEE-Ee---------------
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPR----------------PVMV-SR---------------   82 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~--~~~~t~~----------------~~~~-~~---------------   82 (243)
                      ...++|.++|.-..|||||+.+|+|........  ..+.|.+                +..+ ..               
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            367999999999999999999999864321100  0000000                0000 00               


Q ss_pred             -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEE
Q 026113           83 -SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  161 (243)
Q Consensus        83 -~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  161 (243)
                       ......+.++||||..       .+.+.+...+  ..+|++++|++++.........+.+ .+...++.   +++|+|+
T Consensus       112 ~~~~~~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi---~~iIVvl  178 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHL-AAVEIMKL---KHIIILQ  178 (460)
T ss_pred             cccccceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHH-HHHHHcCC---CcEEEEE
Confidence             0112478999999962       3333333222  4889999997776421122122223 23334443   5899999


Q ss_pred             eCCCCC
Q 026113          162 THAQLS  167 (243)
Q Consensus       162 tk~D~~  167 (243)
                      ||+|+.
T Consensus       179 NKiDlv  184 (460)
T PTZ00327        179 NKIDLV  184 (460)
T ss_pred             eccccc
Confidence            999986

>TIGR00092 GTP-binding protein YchF

Probab=98.63  E-value=2.6e-07  Score=80.03  Aligned_cols=84  Identities=20%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~~  102 (243)
                      +++.++|.+++|||||.|+|++........+|.+|..+......+.+                 ..+.++|.||+.....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            78999999999999999999999854667778887777665554433                 2589999999975432


Q ss_pred             ----CcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113          103 ----VNYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus       103 ----~~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                          .....+..++      .+|++++|++.
T Consensus        83 ~g~Glgn~fL~~ir------~~d~l~hVvr~  107 (368)
T TIGR00092        83 KGEGLGNQFLANIR------EVDIIQHVVRC  107 (368)
T ss_pred             cccCcchHHHHHHH------hCCEEEEEEeC
Confidence                3345666665      88999999775

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PTZ00099 rab6; Provisional

Probab=98.62  E-value=5.1e-07  Score=70.90  Aligned_cols=78  Identities=14%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+|||||........       ..++  .++|++|+|++++.....+....|+..+....+.  ..|+++|+||+|+
T Consensus        29 v~l~iwDt~G~e~~~~~~-------~~~~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~DL   97 (176)
T PTZ00099         29 VRLQLWDTAGQERFRSLI-------PSYI--RDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKTDL   97 (176)
T ss_pred             EEEEEEECCChHHhhhcc-------HHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccc
Confidence            578999999995432211       1222  5999999998886533223334666666554433  3689999999998


Q ss_pred             CCCCCCCHH
Q 026113          167 SLPDRLDYE  175 (243)
Q Consensus       167 ~~~~~~~~~  175 (243)
                      ......+.+
T Consensus        98 ~~~~~v~~~  106 (176)
T PTZ00099         98 GDLRKVTYE  106 (176)
T ss_pred             ccccCCCHH
Confidence            643334433

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.61  E-value=2.3e-07  Score=80.72  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------CcccccC--CC--CC--------CCeeEEEEe-e-------------eC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST--FQ--SE--------GPRPVMVSR-S-------------RA   85 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~~--~~--~~--------t~~~~~~~~-~-------------~~   85 (243)
                      ++..|+++|.+|+||||++..|...      .+.....  +.  +.        ......... .             ..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            4578999999999999999888632      1111110  00  00        000000000 0             01


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.||||||..   ..+....+.+.+.+....+|.+++|++..  .-......+++.+.. +     ..-=+|+||.|
T Consensus       320 ~~DvVLIDTaGRs---~kd~~lm~EL~~~lk~~~PdevlLVLsAT--tk~~d~~~i~~~F~~-~-----~idglI~TKLD  388 (436)
T PRK11889        320 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD-I-----HIDGIVFTKFD  388 (436)
T ss_pred             CCCEEEEeCcccc---CcCHHHHHHHHHHHhhcCCCeEEEEECCc--cChHHHHHHHHHhcC-C-----CCCEEEEEccc
Confidence            3579999999984   23445566666666556788888884442  222333444444443 1     46788999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       389 ET  390 (436)
T PRK11889        389 ET  390 (436)
T ss_pred             CC
Confidence            75

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.60  E-value=5.4e-08  Score=77.70  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=45.3

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.+|||||..   ..+.+..++++++.....++-+++|.+...   ...+...+..+.+.++     ..-+|+||.|
T Consensus        83 ~~D~vlIDT~Gr~---~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~~-----~~~lIlTKlD  151 (196)
T PF00448_consen   83 GYDLVLIDTAGRS---PRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAFG-----IDGLILTKLD  151 (196)
T ss_dssp             TSSEEEEEE-SSS---STHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred             CCCEEEEecCCcc---hhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhccc-----CceEEEEeec
Confidence            4579999999984   345556667776654447888888855542   2344444444444443     4567899999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       152 et  153 (196)
T PF00448_consen  152 ET  153 (196)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00098 GTPase RsgA; Reviewed

Probab=98.60  E-value=1.7e-07  Score=79.69  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=38.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ..++++|.+|+|||||+|+|++.....++..+.       +|.......  ..+ ...++||||+...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~~~-~~~~~DtpG~~~~  229 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--LPG-GGLLIDTPGFSSF  229 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--cCC-CcEEEECCCcCcc
Confidence            478999999999999999999886544333321       232222222  221 2479999999753

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.60  E-value=9.4e-08  Score=80.00  Aligned_cols=59  Identities=24%  Similarity=0.394  Sum_probs=38.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      ..+++|.+|+|||||+|+|.+.....++..       ..+|.....+.....   =.|+||||+.+...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~l  231 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLGL  231 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccCc
Confidence            778899999999999999998643333221       222332222222222   35899999976654

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=5.9e-07  Score=76.55  Aligned_cols=118  Identities=17%  Similarity=0.297  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEe-----------------eeCC--------------
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSR-----------------SRAG--------------   86 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~-----------------~~~~--------------   86 (243)
                      .=|+++|.-+.||||+|+.|+..+...  .++.|++..-.....+                 .+.+              
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            468999999999999999999887431  1222221111111000                 0000              


Q ss_pred             --------eEEEEEeCCCCCCCCCCcH-------HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc
Q 026113           87 --------FTLNIVDTPGLIEGGYVNY-------HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE  151 (243)
Q Consensus        87 --------~~~~viDTPG~~~~~~~~~-------~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~  151 (243)
                              .++.+|||||+.+.....-       .+.+.+.     ..+|.|+++++..-...+++-.+.+..++   |.
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa-----eR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~  210 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA-----ERVDRIILLFDAHKLDISDEFKRVIDALK---GH  210 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH-----HhccEEEEEechhhccccHHHHHHHHHhh---CC
Confidence                    1389999999987654321       1222222     48999999955432224444444444443   43


Q ss_pred             cccccEEEEEeCCCCC
Q 026113          152 QIWKRALIVLTHAQLS  167 (243)
Q Consensus       152 ~~~~~~ivV~tk~D~~  167 (243)
                      +  ..+=||+||+|..
T Consensus       211 E--dkiRVVLNKADqV  224 (532)
T KOG1954|consen  211 E--DKIRVVLNKADQV  224 (532)
T ss_pred             c--ceeEEEecccccc
Confidence            3  4688899999864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.57  E-value=2.3e-07  Score=78.54  Aligned_cols=59  Identities=24%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      -.++++|.+|+|||||+|.|+|.....++..+       .+|..........   ...++||||+.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence            57999999999999999999998654333221       1232222222211   23699999996543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=1.6e-06  Score=77.28  Aligned_cols=114  Identities=12%  Similarity=0.068  Sum_probs=80.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ++.-+.++|.---|||||+..|-+.+++... ..+.|++...+....+   ...+.++||||.        +.+..||.-
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E-aGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRaR   74 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE-AGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRAR   74 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCcccccc-CCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHhc
Confidence            5677899999999999999999999875433 3345666666666664   468999999999        555555531


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       -..-+|.++||+.+|.- +.......+.+.+..     ..|+++..||+|..
T Consensus        75 -Ga~vtDIaILVVa~dDG-v~pQTiEAI~hak~a-----~vP~iVAiNKiDk~  120 (509)
T COG0532          75 -GASVTDIAILVVAADDG-VMPQTIEAINHAKAA-----GVPIVVAINKIDKP  120 (509)
T ss_pred             -CCccccEEEEEEEccCC-cchhHHHHHHHHHHC-----CCCEEEEEecccCC
Confidence             11246899999888753 333344444444432     37999999999986

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.55  E-value=1.1e-07  Score=84.02  Aligned_cols=62  Identities=29%  Similarity=0.428  Sum_probs=51.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      .+.|.+||.+|+||||+||+|.|.+...++..|+.|.+.++...   ...+.++|+||+-=+...
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~  375 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFS  375 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCC
Confidence            48999999999999999999999998888999998887766543   345889999998655443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.54  E-value=6.4e-08  Score=79.61  Aligned_cols=78  Identities=18%  Similarity=0.072  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-ccccccEEEEEeCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQL  166 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~  166 (243)
                      .+.++||||+.+.-...+ ....+.+.+.....-+++++  +|.....+...-.-..+..... -+...|.|.|+||+|+
T Consensus        92 ~y~l~DtPGQiElf~~~~-~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSD-SGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSH-HHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred             cEEEEeCCCCEEEEEech-hHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence            699999999954322221 22223333332344556666  5554444422222211111111 1223699999999999


Q ss_pred             CC
Q 026113          167 SL  168 (243)
Q Consensus       167 ~~  168 (243)
                      .+
T Consensus       169 ~~  170 (238)
T PF03029_consen  169 LS  170 (238)
T ss_dssp             S-
T ss_pred             cc
Confidence            74

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.53  E-value=7.3e-07  Score=73.23  Aligned_cols=75  Identities=21%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             eEEEEEeCCCCCCCC---CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc--ccccccEEEEE
Q 026113           87 FTLNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVL  161 (243)
Q Consensus        87 ~~~~viDTPG~~~~~---~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~  161 (243)
                      .+..+|||||+.+.-   .+..    .+...+....|-+|+||  +|..+.+... .++..+.-.+.  -....|+|+|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGs----IIte~lass~ptvv~Yv--vDt~rs~~p~-tFMSNMlYAcSilyktklp~ivvf  188 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGS----IITETLASSFPTVVVYV--VDTPRSTSPT-TFMSNMLYACSILYKTKLPFIVVF  188 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCcc----chHhhHhhcCCeEEEEE--ecCCcCCCch-hHHHHHHHHHHHHHhccCCeEEEE
Confidence            358899999986421   1111    22233333578999999  5443433322 22222222221  12347999999


Q ss_pred             eCCCCCC
Q 026113          162 THAQLSL  168 (243)
Q Consensus       162 tk~D~~~  168 (243)
                      ||+|+.+
T Consensus       189 NK~Dv~d  195 (366)
T KOG1532|consen  189 NKTDVSD  195 (366)
T ss_pred             ecccccc
Confidence            9999863

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=2.5e-06  Score=76.07  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+|.-|-++|...-|||||+.+|-+..++.... .+.|++...+... ..|..+++.||||.        ..+..||.- 
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~-GGITQhIGAF~V~~p~G~~iTFLDTPGH--------aAF~aMRaR-  220 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA-GGITQHIGAFTVTLPSGKSITFLDTPGH--------AAFSAMRAR-  220 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhc-CCccceeceEEEecCCCCEEEEecCCcH--------HHHHHHHhc-
Confidence            467788899999999999999999988754332 3345543333322 27899999999998        556666531 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      -....|.+++|+..|.. ..   .++++.++..-  +...|+|+.+||+|..
T Consensus       221 GA~vtDIvVLVVAadDG-Vm---pQT~EaIkhAk--~A~VpiVvAinKiDkp  266 (683)
T KOG1145|consen  221 GANVTDIVVLVVAADDG-VM---PQTLEAIKHAK--SANVPIVVAINKIDKP  266 (683)
T ss_pred             cCccccEEEEEEEccCC-cc---HhHHHHHHHHH--hcCCCEEEEEeccCCC
Confidence            12356899999877752 22   33445554432  3347999999999964

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.52  E-value=3.8e-07  Score=73.02  Aligned_cols=118  Identities=20%  Similarity=0.242  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~~-  116 (243)
                      .-||+++|++|+||||+-..++....+.....++.|.+.......+.| .-+.+||.-|+..          .|..++. 
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~----------fmen~~~~   73 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE----------FMENYLSS   73 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH----------HHHHHHhh
Confidence            458999999999999998887766544433444445444443444444 5788999999831          2222221 


Q ss_pred             -----cCCCcEEEEEEeCCCcccChhH---HHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 -----NKTIDVLLYVDRLDVYRVDNLD---KQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 -----~~~~~~il~v~~~d~~~~~~~~---~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                           -...+++++|++++...+...-   .+.|+.+.+.-   ..-.+.+.++|.|+...
T Consensus        74 q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S---P~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   74 QEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS---PEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             cchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC---CcceEEEEEeechhccc
Confidence                 1478999999777653232211   22334444432   22468888999999744

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.51  E-value=3e-07  Score=79.77  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=67.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEE------------------EE-----------eeeCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVM------------------VS-----------RSRAG   86 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~------------------~~-----------~~~~~   86 (243)
                      +.-.|++||+||+||||++-.|...-...  .....-.|.++..                  ..           .....
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            36789999999999999887766442200  0000001111110                  00           01235


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+|||.|.   +..+....+.++.++......-+.+|++.+.  -.+.-+.++    +.|+.  ...--+++||.|.
T Consensus       282 ~d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~----~~f~~--~~i~~~I~TKlDE  350 (407)
T COG1419         282 CDVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEII----KQFSL--FPIDGLIFTKLDE  350 (407)
T ss_pred             CCEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHH----HHhcc--CCcceeEEEcccc
Confidence            57999999998   5566677778888775333444555544442  223333334    33432  1356788999996


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       351 T  351 (407)
T COG1419         351 T  351 (407)
T ss_pred             c
Confidence            4

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=1.7e-06  Score=68.47  Aligned_cols=117  Identities=17%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~-  116 (243)
                      .+-.|+++|.+++|||+|.-.|......  ...+  +.++.......+...+.+||-||..       .....+.+++. 
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~--~Tvt--Siepn~a~~r~gs~~~~LVD~PGH~-------rlR~kl~e~~~~  105 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHR--GTVT--SIEPNEATYRLGSENVTLVDLPGHS-------RLRRKLLEYLKH  105 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCcc--Ceee--eeccceeeEeecCcceEEEeCCCcH-------HHHHHHHHHccc
Confidence            4478999999999999998877755321  1111  1122223333445568999999994       22233333332 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc----ccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivV~tk~D~~  167 (243)
                      ...+-+|++|  +|...+...-+...+.+-...-    ..-..|+.++-||.|+.
T Consensus       106 ~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  106 NYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             cccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            2367888888  5554555555555555444332    23346899999999986

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.49  E-value=4.2e-07  Score=76.62  Aligned_cols=88  Identities=25%  Similarity=0.321  Sum_probs=65.6

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--------------CC---eEEEEEeCCCC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--------------AG---FTLNIVDTPGL   97 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--------------~~---~~~~viDTPG~   97 (243)
                      +....++|.+||.+++||||+.|+|+..... ...+|.+|.++.......              .+   ..++++|.+|+
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL   94 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL   94 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence            4446799999999999999999999988864 778888888765443321              11   25999999998


Q ss_pred             CCCCC----CcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113           98 IEGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus        98 ~~~~~----~~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      ..+..    .....+..+|      .+|+|+.|++.
T Consensus        95 vkGAs~G~GLGN~FLs~iR------~vDaifhVVr~  124 (391)
T KOG1491|consen   95 VKGASAGEGLGNKFLSHIR------HVDAIFHVVRA  124 (391)
T ss_pred             ccCcccCcCchHHHHHhhh------hccceeEEEEe
Confidence            75443    3446677776      78888888653

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.45  E-value=8.4e-07  Score=74.07  Aligned_cols=70  Identities=26%  Similarity=0.320  Sum_probs=52.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~  106 (243)
                      ..+.+++++|-+|+|||||||++...     ..+.++..|+.|..........+...+.++||||..-++..+.+
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e  215 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE  215 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence            36799999999999999999997743     33446666666655444344456668999999999888766654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.42  E-value=1.1e-05  Score=67.72  Aligned_cols=72  Identities=14%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEE
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  158 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i  158 (243)
                      .+..+.+|||||...   .+....++++++..      ...+|.+++|++...   ..........+.+.+     ...-
T Consensus       153 ~~~D~ViIDT~G~~~---~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~-----~~~g  221 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQ---NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAV-----GLTG  221 (272)
T ss_pred             CCCCEEEEeCCCCCc---chHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhC-----CCCE
Confidence            456899999999853   24444555554432      234899999966642   233333334444333     3678


Q ss_pred             EEEeCCCCC
Q 026113          159 IVLTHAQLS  167 (243)
Q Consensus       159 vV~tk~D~~  167 (243)
                      +|+||.|..
T Consensus       222 ~IlTKlDe~  230 (272)
T TIGR00064       222 IILTKLDGT  230 (272)
T ss_pred             EEEEccCCC
Confidence            999999975

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.40  E-value=4.2e-06  Score=72.68  Aligned_cols=119  Identities=17%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------Cccccc--CCCCCC----------CeeEEEEe-e-------------eC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVS--TFQSEG----------PRPVMVSR-S-------------RA   85 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~--~~~~~t----------~~~~~~~~-~-------------~~   85 (243)
                      .+-.++++|++|+||||++..|...      .+..+.  .+.+..          ........ .             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            3457899999999999998877632      222111  110000          00001100 0             12


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.+|||||..   ..+.+..+.+..+.....+|.+++|  ++.. ..  .....+.+. .|..  ....-+|+||.|
T Consensus       285 ~~D~VLIDTAGr~---~~d~~~l~EL~~l~~~~~p~~~~LV--Lsag-~~--~~d~~~i~~-~f~~--l~i~glI~TKLD  353 (407)
T PRK12726        285 CVDHILIDTVGRN---YLAEESVSEISAYTDVVHPDLTCFT--FSSG-MK--SADVMTILP-KLAE--IPIDGFIITKMD  353 (407)
T ss_pred             CCCEEEEECCCCC---ccCHHHHHHHHHHhhccCCceEEEE--CCCc-cc--HHHHHHHHH-hcCc--CCCCEEEEEccc
Confidence            4689999999984   3445666677766654577888888  4331 11  222332222 2332  146788999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       354 ET  355 (407)
T PRK12726        354 ET  355 (407)
T ss_pred             CC
Confidence            74

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.40  E-value=4.6e-06  Score=74.42  Aligned_cols=124  Identities=17%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------------------------------------------------
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------------------------------------------------   71 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~------------------------------------------------   71 (243)
                      .++++||.-.+||||++..+....+|+.+...                                                
T Consensus       309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr  388 (980)
T KOG0447|consen  309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR  388 (980)
T ss_pred             ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence            59999999999999999998877665433211                                                


Q ss_pred             -----CCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCCC------cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChh
Q 026113           72 -----SEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYV------NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNL  137 (243)
Q Consensus        72 -----~~t~~~~~~~~~~~~---~~~~viDTPG~~~~~~~------~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~  137 (243)
                           ++|....+....+.|   ..+.++|.||...+-..      .+.+.+..+.++  .+|++||+|+.-.  + .+.
T Consensus       389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQDG--S-VDA  463 (980)
T KOG0447|consen  389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQDG--S-VDA  463 (980)
T ss_pred             hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEeccC--C-cch
Confidence                 001111112223333   25889999998754321      122333333344  5899999995322  2 233


Q ss_pred             HHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          138 DKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       138 ~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ++..+.-+-..+.. ..+++|+|+||.|+.+.
T Consensus       464 ERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  464 ERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hhhhHHHHHHhcCC-CCCeeEEEEeecchhhh
Confidence            44333333333332 23789999999999744

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=3.6e-06  Score=78.78  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCC------------CCCCCeeEEEEeeeCC-eEEEEEeCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTF------------QSEGPRPVMVSRSRAG-FTLNIVDTPGLIE   99 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~------------~~~t~~~~~~~~~~~~-~~~~viDTPG~~~   99 (243)
                      .--+|.++|...+|||||..+|+-..-..     +...            .+.|.........|.+ ..+.+|||||.-|
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD   88 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD   88 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence            45789999999999999999988332111     1100            1122233334566785 9999999999976


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..   .++.+.++      -.|+.++|++...--..+.+.-    +++....  ..|.++++||+|..
T Consensus        89 Ft---~EV~rslr------vlDgavvVvdaveGV~~QTEtv----~rqa~~~--~vp~i~fiNKmDR~  141 (697)
T COG0480          89 FT---IEVERSLR------VLDGAVVVVDAVEGVEPQTETV----WRQADKY--GVPRILFVNKMDRL  141 (697)
T ss_pred             cH---HHHHHHHH------hhcceEEEEECCCCeeecHHHH----HHHHhhc--CCCeEEEEECcccc
Confidence            53   34555555      6688888866643222222222    2222222  26999999999975

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=1.6e-06  Score=77.34  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVT--------------VSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~--------------~~~~~~~t~~~~~~~~~~~~---~~~~viDTPG~~~~~~  102 (243)
                      -++.++-.-.-|||||...|+...-+.              +....+.|...+.....+.+   .-+.+|||||.-|.+.
T Consensus        61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~  140 (650)
T KOG0462|consen   61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG  140 (650)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence            478889999999999999988432111              11223345555555555554   6899999999987654


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      .   +.+.+.      -++++|+|++..+    ..+.+++..+...|..+  ..+|.|+||+|+...
T Consensus       141 E---VsRsla------ac~G~lLvVDA~q----GvqAQT~anf~lAfe~~--L~iIpVlNKIDlp~a  192 (650)
T KOG0462|consen  141 E---VSRSLA------ACDGALLVVDASQ----GVQAQTVANFYLAFEAG--LAIIPVLNKIDLPSA  192 (650)
T ss_pred             e---ehehhh------hcCceEEEEEcCc----CchHHHHHHHHHHHHcC--CeEEEeeeccCCCCC
Confidence            3   223343      6789999955542    23444555555555443  479999999998644

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.38  E-value=1.8e-06  Score=75.26  Aligned_cols=125  Identities=17%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCCCCC----------------eeEEEE----------eeeCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGP----------------RPVMVS----------RSRAG   86 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~~~~t~----------------~~~~~~----------~~~~~   86 (243)
                      +.-.++++|++|+||||++..|.+.-...     +.-....+.                .+....          ..+.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            34689999999999999998887532100     000000000                000000          11346


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccc---cccEEEEEeC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI---WKRALIVLTH  163 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivV~tk  163 (243)
                      ..+.+|||||..   ..+....+.+........+.-.++|++..  .-.+.....++.+....+...   ....=+|+||
T Consensus       216 ~DlVLIDTaG~~---~~d~~l~e~La~L~~~~~~~~~lLVLsAt--s~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK  290 (374)
T PRK14722        216 KHMVLIDTIGMS---QRDRTVSDQIAMLHGADTPVQRLLLLNAT--SHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTK  290 (374)
T ss_pred             CCEEEEcCCCCC---cccHHHHHHHHHHhccCCCCeEEEEecCc--cChHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence            689999999984   23334444444332223455567774443  222333445555555433110   0145688999


Q ss_pred             CCCC
Q 026113          164 AQLS  167 (243)
Q Consensus       164 ~D~~  167 (243)
                      .|..
T Consensus       291 lDEt  294 (374)
T PRK14722        291 LDEA  294 (374)
T ss_pred             cccC
Confidence            9975

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.37  E-value=6.5e-06  Score=70.17  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..+++.+.........|.++|.+|+|||||++.+..
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345566665556789999999999999999998774

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.35  E-value=3.2e-06  Score=74.10  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccC------------C---CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST------------F---QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN  104 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~------------~---~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~  104 (243)
                      -+|+++...--|||||+..|+.+.-.+...            .   .+.|.-.......|++..+.|+||||.-|.+..-
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            478999999999999999999664222111            0   1112222233457889999999999998776543


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +   +.+.      =.|.+|+++++..-.+.+....    +++.+..+  .+-|+|+||+|...
T Consensus        86 E---Rvl~------MVDgvlLlVDA~EGpMPQTrFV----lkKAl~~g--L~PIVVvNKiDrp~  134 (603)
T COG1217          86 E---RVLS------MVDGVLLLVDASEGPMPQTRFV----LKKALALG--LKPIVVINKIDRPD  134 (603)
T ss_pred             h---hhhh------hcceEEEEEEcccCCCCchhhh----HHHHHHcC--CCcEEEEeCCCCCC
Confidence            3   3332      4688888866543233333332    23333322  46788999999753

>PRK14974 cell division protein FtsY; Provisional

Probab=98.35  E-value=8.7e-07  Score=76.30  Aligned_cols=71  Identities=15%  Similarity=0.280  Sum_probs=44.7

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.+|||||...   .+......++.......+|.+++|.+..  . .+......+.+.+..     ...-+|+||.|
T Consensus       222 ~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLVl~a~--~-g~d~~~~a~~f~~~~-----~~~giIlTKlD  290 (336)
T PRK14974        222 GIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFVGDAL--A-GNDAVEQAREFNEAV-----GIDGVILTKVD  290 (336)
T ss_pred             CCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEeeccc--c-chhHHHHHHHHHhcC-----CCCEEEEeeec
Confidence            45799999999853   3445555666554445789999995442  2 233333334443332     35789999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       291 ~~  292 (336)
T PRK14974        291 AD  292 (336)
T ss_pred             CC
Confidence            75

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=2.5e-06  Score=83.23  Aligned_cols=135  Identities=14%  Similarity=0.149  Sum_probs=75.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCc--ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-----HH---HHHHH
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-----YH---AIQLI  111 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~-----~~---~~~~~  111 (243)
                      -++||++|+||||++.. .|...  .......+.....+.....+-+..-.+|||.|-+-.....     .+   .+..+
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            47789999999998754 33332  1111111111111111224456677899999965433211     11   23334


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcc-cChhHH--------HHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhh
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYR-VDNLDK--------QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS  182 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~-~~~~~~--------~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~  182 (243)
                      +++...+..|+|++.+++.... ....+.        .-++.+.+.++..  .|+++++||.|+.+.    +++|....+
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~G----F~efF~~l~  280 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPG----FEEFFGSLN  280 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEeccccccc----HHHHHhccC
Confidence            5554557899999998764321 222222        1244555555544  599999999999743    555544444


Q ss_pred             H
Q 026113          183 E  183 (243)
Q Consensus       183 ~  183 (243)
                      +
T Consensus       281 ~  281 (1188)
T COG3523         281 K  281 (1188)
T ss_pred             H
Confidence            3

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.30  E-value=1.8e-05  Score=67.93  Aligned_cols=119  Identities=20%  Similarity=0.302  Sum_probs=64.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------Cccccc-CC-CC-----------CCCeeEEEEe----------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVS-TF-QS-----------EGPRPVMVSR----------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~-~~-~~-----------~t~~~~~~~~----------------   82 (243)
                      .+-.|+++|.+|+||||++..|.+.      .+.... +. ..           ...-+.....                
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4578999999999999998887643      221111 10 00           0000001000                


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR  156 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~  156 (243)
                      ...+..+.+|||||....   +....+++++...      ...++-+++|++...   ..........+.+.+     ..
T Consensus       193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~  261 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GL  261 (318)
T ss_pred             HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CC
Confidence            123457999999998532   3333334443321      235788889955542   222222223333222     46


Q ss_pred             EEEEEeCCCCC
Q 026113          157 ALIVLTHAQLS  167 (243)
Q Consensus       157 ~ivV~tk~D~~  167 (243)
                      .-+|+||.|..
T Consensus       262 ~giIlTKlD~t  272 (318)
T PRK10416        262 TGIILTKLDGT  272 (318)
T ss_pred             CEEEEECCCCC
Confidence            78999999964

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=6.6e-06  Score=73.86  Aligned_cols=139  Identities=13%  Similarity=0.141  Sum_probs=77.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC---C----------ccc-----------------ccCCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE---K----------AVT-----------------VSTFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~---~----------~~~-----------------~~~~~~~t~~~~~~~~~~~~   86 (243)
                      +..+.++++|...+|||||.-.++-.   -          .+.                 ..+..+.|.+......+...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            35689999999999999998887732   0          000                 00011112222222334455


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC-----hhHHHHHHHHHHHhcccccccEEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD-----NLDKQITRAITDNFGEQIWKRALIVL  161 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~-----~~~~~~l~~l~~~~~~~~~~~~ivV~  161 (243)
                      ..++++|+||..|.   ...++.-+      ..+|+-++|++.+...+.     ....+-.-.+.+.+|.   .++||++
T Consensus       255 ~~~tliDaPGhkdF---i~nmi~g~------sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi---~qlivai  322 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDF---IPNMISGA------SQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI---SQLIVAI  322 (603)
T ss_pred             eeEEEecCCCcccc---chhhhccc------cccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc---ceEEEEe
Confidence            68999999996433   22322222      378888888766432221     1222233344455663   6899999


Q ss_pred             eCCCCCCCCCCCHHHHHHhhhHHHHHHHcc
Q 026113          162 THAQLSLPDRLDYEVFCSKRSEALLKFVSP  191 (243)
Q Consensus       162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~  191 (243)
                      ||+|+..   ++-+.|. +....+..++.+
T Consensus       323 NKmD~V~---Wsq~RF~-eIk~~l~~fL~~  348 (603)
T KOG0458|consen  323 NKMDLVS---WSQDRFE-EIKNKLSSFLKE  348 (603)
T ss_pred             ecccccC---ccHHHHH-HHHHHHHHHHHH
Confidence            9999852   3323332 223455666633

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.27  E-value=2.3e-06  Score=75.69  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=63.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCCCCCe---------------eEEE-----------EeeeCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPR---------------PVMV-----------SRSRAG   86 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~~~~t~~---------------~~~~-----------~~~~~~   86 (243)
                      ..-.|+++|.+|+||||++..|.+.....     +.-....+..               ....           .....+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            34589999999999999999877542110     0000000000               0000           011245


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+|||+|..   ..+....+.+........++-.++|++...  -.+.-.+++    ..|..  ....=+|+||.|.
T Consensus       270 ~d~VLIDTaGrs---qrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~----~~f~~--~~~~~~I~TKlDE  338 (420)
T PRK14721        270 KHMVLIDTVGMS---QRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVI----SAYQG--HGIHGCIITKVDE  338 (420)
T ss_pred             CCEEEecCCCCC---cchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHH----HHhcC--CCCCEEEEEeeeC
Confidence            578999999984   333445555555433234566777744432  112222233    33322  1457789999997


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       339 t  339 (420)
T PRK14721        339 A  339 (420)
T ss_pred             C
Confidence            5

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.25  E-value=7.9e-06  Score=67.11  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=27.4

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .++++.+.+...+...|.+.|.+|+|||||++.|.
T Consensus        16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~   50 (266)
T PF03308_consen   16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALI   50 (266)
T ss_dssp             HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHH
Confidence            45666666666678999999999999999999876

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=3.8e-06  Score=64.32  Aligned_cols=118  Identities=13%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC----CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-H
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ----SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-K  112 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~-~  112 (243)
                      ....++++|..++||||++-+.-......-...+    .+|..-......+.+.++.+||.-|+.        ..+.+ .
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe--------~lrSlw~   87 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE--------SLRSLWK   87 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH--------HHHHHHH
Confidence            6799999999999999998775432210101110    112222334455667899999998883        22233 2


Q ss_pred             HHHhcCCCcEEEEEEeCCC-cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .|.  ..+|+++++++... .++ +..+..++.+...-. --..|+++..||.|+.
T Consensus        88 ~yY--~~~H~ii~viDa~~~eR~-~~~~t~~~~v~~~E~-leg~p~L~lankqd~q  139 (197)
T KOG0076|consen   88 KYY--WLAHGIIYVIDATDRERF-EESKTAFEKVVENEK-LEGAPVLVLANKQDLQ  139 (197)
T ss_pred             HHH--HHhceeEEeecCCCHHHH-HHHHHHHHHHHHHHH-hcCCchhhhcchhhhh
Confidence            333  37899999966643 233 334444444332211 1125999999999974

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.20  E-value=5.7e-06  Score=77.78  Aligned_cols=121  Identities=14%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccccc-----CCCCCCCe---------------eEEEE-----------eeeCCe
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS-----TFQSEGPR---------------PVMVS-----------RSRAGF   87 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~-----~~~~~t~~---------------~~~~~-----------~~~~~~   87 (243)
                      .--|+++|.+|+||||++..|.+.-....+     -....+..               .....           ....+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            357899999999999999888864311100     00000000               00000           012345


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.||||||..   ..+....+.+........++-+++|++..  .-.+.-.+.++.+....+.   ...=+|+||.|..
T Consensus       265 D~VLIDTAGRs---~~d~~l~eel~~l~~~~~p~e~~LVLsAt--~~~~~l~~i~~~f~~~~~~---~i~glIlTKLDEt  336 (767)
T PRK14723        265 HLVLIDTVGMS---QRDRNVSEQIAMLCGVGRPVRRLLLLNAA--SHGDTLNEVVHAYRHGAGE---DVDGCIITKLDEA  336 (767)
T ss_pred             CEEEEeCCCCC---ccCHHHHHHHHHHhccCCCCeEEEEECCC--CcHHHHHHHHHHHhhcccC---CCCEEEEeccCCC
Confidence            79999999973   23444555555544334677788884443  2112222333444332111   2456889999975

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.19  E-value=2.7e-06  Score=75.73  Aligned_cols=119  Identities=21%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC------CCcccccC--CCCCC-----------CeeEEEEe--------------ee
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVST--FQSEG-----------PRPVMVSR--------------SR   84 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg------~~~~~~~~--~~~~t-----------~~~~~~~~--------------~~   84 (243)
                      .|..|+++|.+|+||||++..|..      ..+..+..  +.+..           .-+.....              ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            578899999999999998876652      22211110  00000           00000000              01


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .+..+.|+||||..   ..++...++++.......+|.+++|++...   ..   ..+..... |.+.. ...-+|+||.
T Consensus       174 ~~~DvVIIDTAGr~---~~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~l-~i~gvIlTKl  242 (437)
T PRK00771        174 KKADVIIVDTAGRH---ALEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEAV-GIGGIIITKL  242 (437)
T ss_pred             hcCCEEEEECCCcc---cchHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhcC-CCCEEEEecc
Confidence            23479999999984   335556666665544447888999955532   22   22223222 33221 2456788998


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |..
T Consensus       243 D~~  245 (437)
T PRK00771        243 DGT  245 (437)
T ss_pred             cCC
Confidence            863

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.19  E-value=3.1e-05  Score=75.43  Aligned_cols=103  Identities=10%  Similarity=0.019  Sum_probs=62.1

Q ss_pred             CcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC------------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026113           50 VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVNYHAIQLI  111 (243)
Q Consensus        50 ~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~viDTPG~~~~~~~~~~~~~~~  111 (243)
                      ++||||+.+|.+.+++... ..+.|++...+....+.                  ..+.+|||||..+.        ..+
T Consensus       472 ~~KTtLLD~iR~t~v~~~E-aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l  542 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKE-AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL  542 (1049)
T ss_pred             cccccHHHHHhCCCccccc-CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence            3599999999999874322 22334433222222221                  13899999997322        112


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +. .....+|++++|++++. .+.......+..+...     ..|+++|+||+|+.+
T Consensus       543 r~-~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~  592 (1049)
T PRK14845        543 RK-RGGSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLIP  592 (1049)
T ss_pred             HH-hhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence            11 11247899999987753 2444455555544432     369999999999863

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=2.3e-05  Score=68.43  Aligned_cols=115  Identities=12%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh--CCCcccccC-------------------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII--GEKAVTVST-------------------FQSEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll--g~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +.-+.+++-.+-+|||||...|+  |..+...+.                   ..+.+..+...+..+.+.-+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            35678899999999999998776  332211110                   011122333456678899999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..|..   ++..+.+.      .+|..+.|  +|...--+....-|-.+.++.+    .|++-.+||+|..
T Consensus        91 HeDFS---EDTYRtLt------AvDsAvMV--IDaAKGiE~qT~KLfeVcrlR~----iPI~TFiNKlDR~  146 (528)
T COG4108          91 HEDFS---EDTYRTLT------AVDSAVMV--IDAAKGIEPQTLKLFEVCRLRD----IPIFTFINKLDRE  146 (528)
T ss_pred             ccccc---hhHHHHHH------hhheeeEE--EecccCccHHHHHHHHHHhhcC----CceEEEeeccccc
Confidence            97764   23333332      77899999  5544422323222323334333    6999999999963

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=4.5e-05  Score=63.47  Aligned_cols=138  Identities=13%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             hcCCCceEEEEEcCCCCcHHHHHHHHhCCCc------c---------cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113           34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKA------V---------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI   98 (243)
Q Consensus        34 ~~~~~~~~IllvG~~g~GKSSlin~llg~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~   98 (243)
                      ...+..++|..+|...-|||||..+|+..-.      +         +.....+.|..+.....+...+.+..+|+||.-
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            4556789999999999999999998874310      0         011111223333344556678899999999984


Q ss_pred             CCCCCcHHHHHHHHHHH-hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113           99 EGGYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                      |          ++++.+ .....|..|+|++.+.-...+....+  .+.+..|-   .++++++||+|+.+  +.+.-+.
T Consensus        87 D----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--LlarqvGv---p~ivvflnK~Dmvd--d~ellel  149 (394)
T COG0050          87 D----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQVGV---PYIVVFLNKVDMVD--DEELLEL  149 (394)
T ss_pred             H----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhcCC---cEEEEEEecccccC--cHHHHHH
Confidence            2          233322 12356888888776543332222111  23444442   46888999999973  2223333


Q ss_pred             HHhhhHHHHHHHcc
Q 026113          178 CSKRSEALLKFVSP  191 (243)
Q Consensus       178 ~~~~~~~l~~~i~~  191 (243)
                      +   ..+.++++..
T Consensus       150 V---emEvreLLs~  160 (394)
T COG0050         150 V---EMEVRELLSE  160 (394)
T ss_pred             H---HHHHHHHHHH
Confidence            3   4566666655

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=4.1e-05  Score=69.26  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..-.|+++|.+|+||||++..|..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346889999999999999988764

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.12  E-value=1.6e-05  Score=66.54  Aligned_cols=118  Identities=19%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCCC------------CCCeeEEEE-e-------------eeCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQS------------EGPRPVMVS-R-------------SRAG   86 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~------~~~~~~~~~~------------~t~~~~~~~-~-------------~~~~   86 (243)
                      .-+++++|.+|+||||++..+.+.      .+.....-+.            ......... .             ...+
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            369999999999999998877643      1111110000            000000000 0             0124


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.++||||..   ..+.+..+++.+.+....++-+++|++..  ...+.-..+++.+..      ...-=+|+||.|.
T Consensus       155 ~D~ViIDt~Gr~---~~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~~~f~~------~~~~~~I~TKlDe  223 (270)
T PRK06731        155 VDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD------IHIDGIVFTKFDE  223 (270)
T ss_pred             CCEEEEECCCCC---cCCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHHHHhCC------CCCCEEEEEeecC
Confidence            689999999984   33445555666655445677888884443  222333344444432      1467889999997


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       224 t  224 (270)
T PRK06731        224 T  224 (270)
T ss_pred             C
Confidence            5

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.08  E-value=1.4e-05  Score=71.18  Aligned_cols=71  Identities=14%  Similarity=0.073  Sum_probs=38.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      +..+.||||||..   ..+......+..++. ...+.-+.+|++...  -.....++.    +.|..-  ...-+|+||.
T Consensus       299 ~~DlVlIDt~G~~---~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~----~~f~~~--~~~~vI~TKl  367 (424)
T PRK05703        299 DCDVILIDTAGRS---QRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIY----KHFSRL--PLDGLIFTKL  367 (424)
T ss_pred             CCCEEEEeCCCCC---CCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHH----HHhCCC--CCCEEEEecc
Confidence            4679999999984   334344445555543 223445566644432  112222333    333321  2346899999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |..
T Consensus       368 Det  370 (424)
T PRK05703        368 DET  370 (424)
T ss_pred             ccc
Confidence            964

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.08  E-value=6.7e-06  Score=70.80  Aligned_cols=76  Identities=21%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhhhc--CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           23 TKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        23 ~~l~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ..|..+++.+.+.  +++.+.+.+||.+++||||+||.|-...+..+.+.++.|.--++.   .--+.+.+||+||+--+
T Consensus       289 galI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI---tLmkrIfLIDcPGvVyp  365 (572)
T KOG2423|consen  289 GALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI---TLMKRIFLIDCPGVVYP  365 (572)
T ss_pred             hHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH---HHHhceeEecCCCccCC
Confidence            3455555555543  347799999999999999999999999988888888776532221   12346899999998654


Q ss_pred             C
Q 026113          101 G  101 (243)
Q Consensus       101 ~  101 (243)
                      .
T Consensus       366 s  366 (572)
T KOG2423|consen  366 S  366 (572)
T ss_pred             C
Confidence            4

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=1.5e-05  Score=62.00  Aligned_cols=117  Identities=14%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE-EEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++++++|..|.||++++++.+-... .....++.+.... ....+..| .++.+|||+|+.-.....+-  .++    
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeF-e~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg--yyI----   81 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEF-EKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG--YYI----   81 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccc-eecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc--cEE----
Confidence            468999999999999999998875542 2212222222211 11222334 68999999999644332221  011    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .+..++ +++++...-.-....+|.+.+.+.++.   .|+++++||.|.-
T Consensus        82 --~~qcAi-imFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~  127 (216)
T KOG0096|consen   82 --QGQCAI-IMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK  127 (216)
T ss_pred             --ecceeE-EEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence              233444 443444322334556677777777665   6999999999874

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=6.7e-05  Score=65.94  Aligned_cols=119  Identities=16%  Similarity=0.247  Sum_probs=62.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC----------Cccccc--CCCCC-----------CCeeEEEE----------eee
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE----------KAVTVS--TFQSE-----------GPRPVMVS----------RSR   84 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~----------~~~~~~--~~~~~-----------t~~~~~~~----------~~~   84 (243)
                      .+..|+++|++|+||||++..|...          .+..+.  .+...           ..-+....          ...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            4578999999999999998776532          111111  00000           00000100          012


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      .+..+.+|||||..-   .+...+..+.+.+.... .+-+++|++...  - ..+  ..+.+.+ |..  ....=+|+||
T Consensus       253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~--~-~~~--~~~~~~~-~~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT--K-TSD--VKEIFHQ-FSP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC--C-HHH--HHHHHHH-hcC--CCCCEEEEEe
Confidence            456799999999853   23333555555553223 335677744432  1 222  1222322 221  1367889999


Q ss_pred             CCCC
Q 026113          164 AQLS  167 (243)
Q Consensus       164 ~D~~  167 (243)
                      .|..
T Consensus       322 lDet  325 (388)
T PRK12723        322 LDET  325 (388)
T ss_pred             ccCC
Confidence            9975

>smart00275 G_alpha G protein alpha subunit

Probab=98.04  E-value=5.2e-05  Score=65.75  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=46.9

Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhccc--
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGEQ--  152 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~~--  152 (243)
                      ..+.+..+.+||..|..   .....+..    |+  .++++|++|+++....       ........+..+...+...  
T Consensus       179 f~~~~~~~~~~DvgGqr---~~R~kW~~----~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      179 FIVKKLFFRMFDVGGQR---SERKKWIH----CF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             EEECCeEEEEEecCCch---hhhhhHHH----Hh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            34566778999999983   22223332    33  4899999998875321       0112233444455544422  


Q ss_pred             ccccEEEEEeCCCCC
Q 026113          153 IWKRALIVLTHAQLS  167 (243)
Q Consensus       153 ~~~~~ivV~tk~D~~  167 (243)
                      ...|+++++||.|+.
T Consensus       250 ~~~piil~~NK~D~~  264 (342)
T smart00275      250 ANTSIILFLNKIDLF  264 (342)
T ss_pred             cCCcEEEEEecHHhH
Confidence            236999999999984

Subunit of G proteins that contains the guanine nucleotide binding site

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.02  E-value=0.00026  Score=55.16  Aligned_cols=71  Identities=20%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.++||||...   .+......+..+.....++.+++|++..  . .....+....+.+..+     ..-+|+||.|
T Consensus        82 ~~d~viiDt~g~~~---~~~~~l~~l~~l~~~~~~~~~~lVv~~~--~-~~~~~~~~~~~~~~~~-----~~~viltk~D  150 (173)
T cd03115          82 NFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAM--T-GQDAVNQAKAFNEALG-----ITGVILTKLD  150 (173)
T ss_pred             CCCEEEEECcccch---hhHHHHHHHHHHHhhcCCCeEEEEEECC--C-ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence            55689999999842   2444555555444334589999996653  2 2233344444443332     3677889999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       151 ~~  152 (173)
T cd03115         151 GD  152 (173)
T ss_pred             CC
Confidence            75

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=5e-06  Score=73.18  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-------ccccc-C-CCCCCC-----------eeEEEE---------eeeCCeEE
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK-------AVTVS-T-FQSEGP-----------RPVMVS---------RSRAGFTL   89 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~-------~~~~~-~-~~~~t~-----------~~~~~~---------~~~~~~~~   89 (243)
                      +..++++|.+|+||||++..|....       +.... + +.....           -+....         ....+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4568999999999999988776421       11110 0 000000           000000         00135678


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHh---cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           90 NIVDTPGLIEGGYVNYHAIQLIKRFLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        90 ~viDTPG~~~~~~~~~~~~~~~~~~~~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .+|||||...   .+....+.+.+++.   ...++-+++|++...  -.+......+    .|..  ....=+|+||.|.
T Consensus       303 VLIDTaGr~~---rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~--~~~~~~~~~~----~f~~--~~~~glIlTKLDE  371 (432)
T PRK12724        303 ILIDTAGYSH---RNLEQLERMQSFYSCFGEKDSVENLLVLSSTS--SYHHTLTVLK----AYES--LNYRRILLTKLDE  371 (432)
T ss_pred             EEEeCCCCCc---cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC--CHHHHHHHHH----HhcC--CCCCEEEEEcccC
Confidence            9999999842   22334444554442   123456677744432  1222233333    3321  1467889999997


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       372 t  372 (432)
T PRK12724        372 A  372 (432)
T ss_pred             C
Confidence            5

>cd00066 G-alpha G protein alpha subunit

Probab=98.02  E-value=4e-05  Score=65.85  Aligned_cols=77  Identities=12%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhccc--
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGEQ--  152 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~~--  152 (243)
                      ..+.+..+.+||++|+..   ....+..    |+  .++++|++|+++....       ....-...+..+...+...  
T Consensus       156 f~~~~~~~~~~DvgGq~~---~R~kW~~----~f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         156 FTIKNLKFRMFDVGGQRS---ERKKWIH----CF--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             EEecceEEEEECCCCCcc---cchhHHH----Hh--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            345677899999999832   2333333    33  4899999998875321       0122233344444444321  


Q ss_pred             ccccEEEEEeCCCCC
Q 026113          153 IWKRALIVLTHAQLS  167 (243)
Q Consensus       153 ~~~~~ivV~tk~D~~  167 (243)
                      ...|+++++||.|+.
T Consensus       227 ~~~pill~~NK~D~f  241 (317)
T cd00066         227 ANTSIILFLNKKDLF  241 (317)
T ss_pred             cCCCEEEEccChHHH
Confidence            237999999999974

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.02  E-value=0.00013  Score=64.97  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=40.3

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.|+||||...   .++...+++......-.++-+++|++.  . ..+......+.+.+.+     ...-+|+||.|
T Consensus       183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVlda--~-~gq~av~~a~~F~~~~-----~i~giIlTKlD  251 (433)
T PRK10867        183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVVDA--M-TGQDAVNTAKAFNEAL-----GLTGVILTKLD  251 (433)
T ss_pred             CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEEec--c-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence            45799999999842   344444555444333467888898443  2 2233334444444322     24567779988


Q ss_pred             C
Q 026113          166 L  166 (243)
Q Consensus       166 ~  166 (243)
                      .
T Consensus       252 ~  252 (433)
T PRK10867        252 G  252 (433)
T ss_pred             C
Confidence            5

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.02  E-value=4.7e-05  Score=63.61  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+++.++.+...++..|.+.|.+|+|||||+..|.
T Consensus        38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~   72 (323)
T COG1703          38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG   72 (323)
T ss_pred             HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence            46777777777789999999999999999998876

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.01  E-value=6.8e-06  Score=70.76  Aligned_cols=74  Identities=23%  Similarity=0.388  Sum_probs=54.0

Q ss_pred             HHHHHHhhhhc--CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           25 LLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        25 l~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      +-+.++.....  -+..+++.++|-+++||||+||+|.......++..|+.|..-+.   ..-+..+.++|.||+.=..
T Consensus       236 l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe---V~Ldk~i~llDsPgiv~~~  311 (435)
T KOG2484|consen  236 LMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE---VKLDKKIRLLDSPGIVPPS  311 (435)
T ss_pred             HHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh---eeccCCceeccCCceeecC
Confidence            34444444432  35789999999999999999999999988777777776653222   2346689999999976443

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.98  E-value=2.2e-05  Score=68.70  Aligned_cols=142  Identities=25%  Similarity=0.349  Sum_probs=80.8

Q ss_pred             cccCChhhHHHHHHHHHh-hhhc---CCCceEEEEEcCCCCcHHHHHHHHh------CCCcccccC--------------
Q 026113           14 IQQFPPATQTKLLELLGK-LKQE---NVNTLTILVMGKGGVGKSSTVNSII------GEKAVTVST--------------   69 (243)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~-~~~~---~~~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~--------------   69 (243)
                      -+++.....++|-+++.. ..+.   ...|..|+++|--|+||||..-.|.      |.++.-+..              
T Consensus        71 ~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~L  150 (451)
T COG0541          71 GQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQL  150 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHH
Confidence            345556667777777763 2222   2357899999999999999765554      222111110              


Q ss_pred             --------CCCC-CCeeEE------EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 026113           70 --------FQSE-GPRPVM------VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV  134 (243)
Q Consensus        70 --------~~~~-t~~~~~------~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~  134 (243)
                              ++.. ..++..      ......+..+.||||+|-.   ..+++..++++..-..-.||=+|+|  +|.. .
T Consensus       151 a~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llV--vDam-~  224 (451)
T COG0541         151 AEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLV--VDAM-I  224 (451)
T ss_pred             HHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEE--Eecc-c
Confidence                    0110 000000      0001234579999999984   4466777777766555689999999  5532 3


Q ss_pred             ChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          135 DNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       135 ~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .+.-....+.+.+..+     -.=+|+||.|-
T Consensus       225 GQdA~~~A~aF~e~l~-----itGvIlTKlDG  251 (451)
T COG0541         225 GQDAVNTAKAFNEALG-----ITGVILTKLDG  251 (451)
T ss_pred             chHHHHHHHHHhhhcC-----CceEEEEcccC
Confidence            3444455555554432     34456666654

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.95  E-value=3.2e-05  Score=59.64  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      ++++|..|+||||+++.+++.
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            678999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=97.94  E-value=7.9e-05  Score=56.21  Aligned_cols=139  Identities=16%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      -.++|.++|.+..|||||.-...+... ........+..+.......  ....+.+||.-|..+...       .+--  
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~-de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n-------~lPi--   88 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEY-DEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN-------MLPI--   88 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchh-HHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc-------cCce--
Confidence            569999999999999999988887753 1111111122222222222  345788999998842211       1110  


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV  189 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i  189 (243)
                      ...++-+||+++++....   ......+|.++..|-+..---|+|+||-|+.-.-..++++.+........+.+
T Consensus        89 ac~dsvaIlFmFDLt~r~---TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m  159 (205)
T KOG1673|consen   89 ACKDSVAILFMFDLTRRS---TLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVM  159 (205)
T ss_pred             eecCcEEEEEEEecCchH---HHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHh
Confidence            114778899998876532   23345566666666433234578999997642212234444433333334444

>TIGR00959 ffh signal recognition particle protein

Probab=97.91  E-value=1.9e-05  Score=70.26  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.|+||||...   .++...+++..+.....++.+++|++..   ..+......+.+.+..     ...=+|+||.|
T Consensus       182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKlD  250 (428)
T TIGR00959       182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKLD  250 (428)
T ss_pred             CCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence            45799999999843   3444555555544334688889995432   2233344444444332     24566688887


Q ss_pred             C
Q 026113          166 L  166 (243)
Q Consensus       166 ~  166 (243)
                      .
T Consensus       251 ~  251 (428)
T TIGR00959       251 G  251 (428)
T ss_pred             C
Confidence            4

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00019  Score=60.55  Aligned_cols=135  Identities=18%  Similarity=0.108  Sum_probs=75.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------------CCCCCCC---eeEEEEeee------CCeE
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS-------------------TFQSEGP---RPVMVSRSR------AGFT   88 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~-------------------~~~~~t~---~~~~~~~~~------~~~~   88 (243)
                      +..++|.++|...-|||||..+|.|--....+                   .++.+..   ......+..      --+.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            35799999999999999999999986221110                   0111110   000001111      1246


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        89 ~~viDTPG~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.++|.||..       -.   |...++. .--|+.|+|+..++......-++-+-. .+..|-   +++|+|-||.|+.
T Consensus        88 VSfVDaPGHe-------~L---MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-leIigi---k~iiIvQNKIDlV  153 (415)
T COG5257          88 VSFVDAPGHE-------TL---MATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-LEIIGI---KNIIIVQNKIDLV  153 (415)
T ss_pred             EEEeeCCchH-------HH---HHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-Hhhhcc---ceEEEEeccccee
Confidence            9999999982       11   2222220 123778888777765543333322211 123332   7999999999996


Q ss_pred             CCCCCCHHHHHHhhhHHHHHHHcc
Q 026113          168 LPDRLDYEVFCSKRSEALLKFVSP  191 (243)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~~i~~  191 (243)
                      .     -++.+++ -+.+++|++.
T Consensus       154 ~-----~E~AlE~-y~qIk~FvkG  171 (415)
T COG5257         154 S-----RERALEN-YEQIKEFVKG  171 (415)
T ss_pred             c-----HHHHHHH-HHHHHHHhcc
Confidence            2     3333333 4567777754

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.85  E-value=6.7e-05  Score=66.20  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVT--------------VSTFQSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~--------------~~~~~~~t~~~~~~~~~~-----~~~~~~viDTPG~~~~~  101 (243)
                      +..++..-.-|||||...|+...-..              .....+.|...+.....+     ....+.+|||||.-|..
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            45566677889999999988542111              111122333333333322     23579999999998765


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..   +.+.+.      .+.+.|+|++..+    ..+.+++..+--.+..+  .-+|.|+||+|+...
T Consensus        91 YE---VSRSLA------ACEGalLvVDAsQ----GveAQTlAN~YlAle~~--LeIiPViNKIDLP~A  143 (603)
T COG0481          91 YE---VSRSLA------ACEGALLVVDASQ----GVEAQTLANVYLALENN--LEIIPVLNKIDLPAA  143 (603)
T ss_pred             EE---ehhhHh------hCCCcEEEEECcc----chHHHHHHHHHHHHHcC--cEEEEeeecccCCCC
Confidence            42   223343      4566777744432    34566666665555543  479999999999644

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00021  Score=64.42  Aligned_cols=111  Identities=20%  Similarity=0.243  Sum_probs=66.3

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ....|+-++++|++|+||||||.+|...-....-+.   -..+.+ ......+.+++..+|.-  -.    ..+.. .  
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~---i~GPiT-vvsgK~RRiTflEcp~D--l~----~miDv-a--  131 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE---IRGPIT-VVSGKTRRITFLECPSD--LH----QMIDV-A--  131 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc---cCCceE-EeecceeEEEEEeChHH--HH----HHHhH-H--
Confidence            345788999999999999999999875431111000   001111 12234467999999831  11    22222 2  


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         .=+|+||+.  +|... +.-+...+|..+... |   ...++-|+|+.|+.
T Consensus       132 ---KIaDLVlLl--IdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlf  176 (1077)
T COG5192         132 ---KIADLVLLL--IDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLF  176 (1077)
T ss_pred             ---HhhheeEEE--eccccCceehHHHHHHHHhhc-C---CCceEEEEeecccc
Confidence               257999999  54433 434445555554443 3   25799999999997

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.80  E-value=2.8e-05  Score=63.60  Aligned_cols=116  Identities=20%  Similarity=0.282  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFL  115 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~~  115 (243)
                      -++-++|-+.+||||++..|.|... .+..+..++-.+......+.+-++++.|.||+.+.....    .+++..     
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav-----  133 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV-----  133 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-----
Confidence            4899999999999999999998863 455555555555555666888999999999998764432    222222     


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccc-cccEEEEEeCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTHAQ  165 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~-~~~~ivV~tk~D  165 (243)
                       .+.+++|++|.++  ... -..++.++.-.+.||-.. ..|--+.+.|.|
T Consensus       134 -artcnli~~vld~--~kp-~~hk~~ie~eleg~girlnk~pp~i~~kkKd  180 (358)
T KOG1487|consen  134 -ARTCNLIFIVLDV--LKP-LSHKKIIEKELEGFGIRLNKQPPNIGTKKKD  180 (358)
T ss_pred             -eecccEEEEEeec--cCc-ccHHHHHHHhhhcceeeccCCCCCccccccc
Confidence             2478999999443  232 346778887778887431 234444445544

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=9.7e-05  Score=55.04  Aligned_cols=124  Identities=17%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      ..+.+.... .+.+|+++|-.|+||+++.-.+--.++..  ..|+.+  .......+.+.++.+||.-|....   .+  
T Consensus         8 ~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvt--tkPtig--fnve~v~yKNLk~~vwdLggqtSi---rP--   77 (182)
T KOG0072|consen    8 LFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVT--TKPTIG--FNVETVPYKNLKFQVWDLGGQTSI---RP--   77 (182)
T ss_pred             HHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccc--cCCCCC--cCccccccccccceeeEccCcccc---cH--
Confidence            334444322 67999999999999999765543222211  122211  223344567889999999888532   22  


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        +.|.|+  .+.+++|||++- |..+..-.-..+...+++---.+  --++++.||.|..
T Consensus        78 --yWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~  132 (182)
T KOG0072|consen   78 --YWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYS  132 (182)
T ss_pred             --HHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccch
Confidence              344444  488999999554 22233333333343333321111  3578888999963

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0001  Score=65.11  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=50.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccc--cEEEEEe
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK--RALIVLT  162 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~--~~ivV~t  162 (243)
                      .|..+.++||+|--   +.++.....+.++.....||.||+|  -+.. ...+....+..+.+.++.....  -=-+++|
T Consensus       465 ~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~~~pd~i~~v--geal-vg~dsv~q~~~fn~al~~~~~~r~id~~~lt  538 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRM---HNNAPLMTSLAKLIKVNKPDLILFV--GEAL-VGNDSVDQLKKFNRALADHSTPRLIDGILLT  538 (587)
T ss_pred             cCCCEEEEeccccc---cCChhHHHHHHHHHhcCCCceEEEe--hhhh-hCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence            46679999999973   3445566677777777899999999  4321 2333445566666666543211  1347889


Q ss_pred             CCCCC
Q 026113          163 HAQLS  167 (243)
Q Consensus       163 k~D~~  167 (243)
                      |+|-.
T Consensus       539 k~dtv  543 (587)
T KOG0781|consen  539 KFDTV  543 (587)
T ss_pred             eccch
Confidence            99853

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.00026  Score=64.87  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccC-------CCC---------CCCe--eEEEE-eeeCC--eEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQS---------EGPR--PVMVS-RSRAG--FTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~-------~~~---------~t~~--~~~~~-~~~~~--~~~~viDTPG   96 (243)
                      .-.++.++|.-+.|||+|...|.++.-.....       +..         ++..  +.+.. ....+  +-+.++||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            34689999999999999999988764311100       000         0000  00000 11122  3588999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .-+.  ++ +....++      -+|++++|+++-.--....++-+-+.++.      ..++++|+||.|..
T Consensus       207 HVnF--~D-E~ta~l~------~sDgvVlvvDv~EGVmlntEr~ikhaiq~------~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  207 HVNF--SD-ETTASLR------LSDGVVLVVDVAEGVMLNTERIIKHAIQN------RLPIVVVINKVDRL  262 (971)
T ss_pred             cccc--hH-HHHHHhh------hcceEEEEEEcccCceeeHHHHHHHHHhc------cCcEEEEEehhHHH
Confidence            8543  22 4444444      78999999776332122333322222222      26999999999874

>PRK01889 GTPase RsgA; Reviewed

Probab=97.76  E-value=3.2e-05  Score=67.43  Aligned_cols=26  Identities=42%  Similarity=0.771  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAV   65 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~   65 (243)
                      -+++++|.+|+|||||+|.|+|....
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~~  221 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEVQ  221 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhccc
Confidence            58999999999999999999987543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00056  Score=58.30  Aligned_cols=114  Identities=18%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC--CCcccccCCCCCCCeeEEEEe--------------eeCCeEEEEEeCCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG--EKAVTVSTFQSEGPRPVMVSR--------------SRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg--~~~~~~~~~~~~t~~~~~~~~--------------~~~~~~~~viDTPG~~~~~  101 (243)
                      ..+++.++|...+|||+|..+|..  ...++.....+++ .......              +....++.++|+||..   
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~e-RgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---   81 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTE-RGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---   81 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccc-cceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence            458999999999999999999873  3222221111111 1111110              1123467999999983   


Q ss_pred             CCcHHHHHHHHHHHh-cCCCcEEEEEEeCCCcccCh-hHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          102 YVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~-~~~~~~il~v~~~d~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                          .   .++..+- ..=.|+.++|+++..-.-++ .+.-   .+.+.+.    +..++|+||+|..++
T Consensus        82 ----s---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~~c----~klvvvinkid~lpE  137 (522)
T KOG0461|consen   82 ----S---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGELLC----KKLVVVINKIDVLPE  137 (522)
T ss_pred             ----H---HHHHHHhhhheeeeeeEEEehhcccccccchhh---hhhhhhc----cceEEEEeccccccc
Confidence                2   2333331 13468888886653211111 1111   2223322    578999999988744

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.75  E-value=6e-05  Score=67.83  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--++++|.+|+||||++..|.+.
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHH
Confidence            357899999999999999888753

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00042  Score=60.73  Aligned_cols=113  Identities=21%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      .|+..|.---|||||+.++.|.....  .....+.|.+...+.....+..+.++|+||+.       +....+-.-  ..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------~~i~~miag--~~   72 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------DFISNLLAG--LG   72 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------HHHHHHHhh--hc
Confidence            46778888899999999999876322  12223344444455555666689999999994       222222221  14


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..|..++|++.|+ .+.....+.+ .+.+.||.   .+.++|+||+|..
T Consensus        73 ~~d~alLvV~~de-Gl~~qtgEhL-~iLdllgi---~~giivltk~D~~  116 (447)
T COG3276          73 GIDYALLVVAADE-GLMAQTGEHL-LILDLLGI---KNGIIVLTKADRV  116 (447)
T ss_pred             CCceEEEEEeCcc-CcchhhHHHH-HHHHhcCC---CceEEEEeccccc
Confidence            7899999977754 2333333333 33456665   6889999999986

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.74  E-value=0.00054  Score=59.05  Aligned_cols=78  Identities=13%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-cChhH------HHHHHHHHHHhccc-
Q 026113           81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLD------KQITRAITDNFGEQ-  152 (243)
Q Consensus        81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-~~~~~------~~~l~~l~~~~~~~-  152 (243)
                      .....+.++.++|.+|+-   .   +..+.+. |+  .++++||+|+.+.... ...++      .+.++.+...+... 
T Consensus       189 ~F~~k~~~f~~~DvGGQR---s---eRrKWih-cF--e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  189 EFTIKGLKFRMFDVGGQR---S---ERKKWIH-CF--EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             EEEeCCCceEEEeCCCcH---H---HhhhHHH-hh--cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            445677889999999972   1   2222222 33  5999999998774332 11122      22333344433322 


Q ss_pred             -ccccEEEEEeCCCCC
Q 026113          153 -IWKRALIVLTHAQLS  167 (243)
Q Consensus       153 -~~~~~ivV~tk~D~~  167 (243)
                       ...++|+.+||.|+.
T Consensus       260 F~~tsiiLFLNK~DLF  275 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLF  275 (354)
T ss_pred             cccCcEEEEeecHHHH
Confidence             225799999999995

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.00018  Score=62.12  Aligned_cols=90  Identities=22%  Similarity=0.267  Sum_probs=55.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC------CCcccc-------cCC------CCCCCeeEEEE----------------
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG------EKAVTV-------STF------QSEGPRPVMVS----------------   81 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg------~~~~~~-------~~~------~~~t~~~~~~~----------------   81 (243)
                      .++--|+++|-.|+||||..-.+..      ....-+       ..+      .....-+.+..                
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            3567899999999999998766552      211110       000      00011111111                


Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      ...++..+.|+||.|-.   ..+.+.+++++.+...-.||-+|+|.+.
T Consensus       179 fKke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmDa  223 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMDA  223 (483)
T ss_pred             HHhcCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            11245679999999984   4456778888877766799999999443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.61  E-value=0.0013  Score=50.06  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 026113           42 ILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg   61 (243)
                      |.++|..|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999888764

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.59  E-value=0.00012  Score=62.11  Aligned_cols=120  Identities=20%  Similarity=0.340  Sum_probs=68.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC------CcccccC-------------------C---C-CCCCeeEE--E----E
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST-------------------F---Q-SEGPRPVM--V----S   81 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~------~~~~~~~-------------------~---~-~~t~~~~~--~----~   81 (243)
                      .+|.-|+++|-.|+||||.|-.|...      .+.....                   .   . ..+.++..  +    .
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            35899999999999999988776632      1110000                   0   0 00111100  0    0


Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h---cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccc
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---L---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK  155 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~---~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~  155 (243)
                      ..-.+..+.++||+|-.-.   .....+++++..   .   ...||=+++|  +|.. ..+.-....+.+.+..+     
T Consensus       217 Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llv--lDAt-tGqnal~QAk~F~eav~-----  285 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLV--LDAT-TGQNALSQAKIFNEAVG-----  285 (340)
T ss_pred             HHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEE--EEcc-cChhHHHHHHHHHHhcC-----
Confidence            1124567999999997432   334444454432   1   2346778999  4432 23445555666666654     


Q ss_pred             cEEEEEeCCCCC
Q 026113          156 RALIVLTHAQLS  167 (243)
Q Consensus       156 ~~ivV~tk~D~~  167 (243)
                      -.=+|+||+|..
T Consensus       286 l~GiIlTKlDgt  297 (340)
T COG0552         286 LDGIILTKLDGT  297 (340)
T ss_pred             CceEEEEecccC
Confidence            456889999965

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.00035  Score=56.71  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      .+|+++|-..+||||+-...+..-.....-+-..|...........-.++.+||.||+.+.-...-.....+      .+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF------~~  101 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIF------RG  101 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHH------hc
Confidence            569999999999999877666442111111111111111111111234789999999876533221222233      37


Q ss_pred             CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .-++++|  +|... ..+...+....+.....-+...++=+.+-|.|..
T Consensus       102 ~gALifv--IDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL  148 (347)
T KOG3887|consen  102 VGALIFV--IDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL  148 (347)
T ss_pred             cCeEEEE--EechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence            8899999  44321 2222233333333333334445677788888876

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.47  E-value=0.00061  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +||+++|..|+|||+++..+....
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~   24 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFP   24 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCC
Confidence            489999999999999999985443

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.0011  Score=61.56  Aligned_cols=113  Identities=12%  Similarity=0.091  Sum_probs=65.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE--EEEe----------------eeCCeEEEEEeCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV--MVSR----------------SRAGFTLNIVDTPGLIE   99 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~--~~~~----------------~~~~~~~~viDTPG~~~   99 (243)
                      +..-+.++|...+|||-|+..|.+.++..... .+.|....  ....                .+.--.+.+|||||.. 
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea-ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE-  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA-GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE-  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccc-cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch-
Confidence            45678899999999999999999987643222 22222110  0000                0111138899999973 


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                             .+..+++.- ..-+|+.|+|+++-. .+...-..-+..|+..     ..|+||.+||+|.
T Consensus       552 -------sFtnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~r-----ktpFivALNKiDR  604 (1064)
T KOG1144|consen  552 -------SFTNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMR-----KTPFIVALNKIDR  604 (1064)
T ss_pred             -------hhhhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhc-----CCCeEEeehhhhh
Confidence                   333344321 135788999965521 1222223334444432     2699999999975

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.37  E-value=0.0095  Score=44.71  Aligned_cols=100  Identities=15%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             EEEcCCCCcHHHHHHHHhCC------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           43 LVMGKGGVGKSSTVNSIIGE------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        43 llvG~~g~GKSSlin~llg~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +.-|+.|+|||++.-.+...      .+..+..-+..+.         -...+.|+|||+..+     +.....+.    
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~-----~~~~~~l~----   65 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGIS-----DNVLDFFL----   65 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCC-----HHHHHHHH----
Confidence            45578999999986554422      1111111111000         016789999998532     22222333    


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                        .+|.++++...+.... ..-...++.+.+..+   ..++.+|+|+++.
T Consensus        66 --~aD~vviv~~~~~~s~-~~~~~~l~~l~~~~~---~~~~~lVvN~~~~  109 (139)
T cd02038          66 --AADEVIVVTTPEPTSI-TDAYALIKKLAKQLR---VLNFRVVVNRAES  109 (139)
T ss_pred             --hCCeEEEEcCCChhHH-HHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence              7899999955553221 112344555554322   2578899999863

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.35  E-value=0.0014  Score=48.05  Aligned_cols=101  Identities=17%  Similarity=0.282  Sum_probs=54.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFLLNKT  119 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~--~~~~~~~~~~~~~~~~  119 (243)
                      |++.|++|+|||+++..+...-                      +.++.-+|.+-+.+....  .......+.+... ..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~   57 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SA   57 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TS
T ss_pred             CEEECcCCCCeeHHHHHHHhhc----------------------ccccccccccccccccccccccccccccccccc-cc
Confidence            6899999999999999988553                      122445665555422111  1122222222211 22


Q ss_pred             CcEEEEEEeCCCcc------cChhHHHHHHHHHHHhccccc--ccEEEEEeCCC
Q 026113          120 IDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIW--KRALIVLTHAQ  165 (243)
Q Consensus       120 ~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~--~~~ivV~tk~D  165 (243)
                      ...||++..+|...      ........+..+...+.....  .++++|+|-.+
T Consensus        58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~  111 (132)
T PF00004_consen   58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS  111 (132)
T ss_dssp             TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred             cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence            25888887776321      112234555566555553322  34677766554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.33  E-value=0.00065  Score=42.56  Aligned_cols=45  Identities=16%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             CCCcEEEEEEeCCCccc--ChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113          118 KTIDVLLYVDRLDVYRV--DNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~--~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      .-+++|+|++++...+-  -+.+...++.++..|++   +|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence            45789999988876652  34567788889999874   79999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.29  E-value=0.0033  Score=57.01  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +-+++.++|..++|||.++++++|+.... +...+.............|  .-+.+-|.+-. +.....+.         
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k---------  492 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK---------  492 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc---------
Confidence            45899999999999999999999987543 2222222211121222222  24555554443 22222211         


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       +..+|++.++++....+.    ...+..+...+-..-..|+++|.+|+|+-
T Consensus       493 -e~~cDv~~~~YDsS~p~s----f~~~a~v~~~~~~~~~~Pc~~va~K~dlD  539 (625)
T KOG1707|consen  493 -EAACDVACLVYDSSNPRS----FEYLAEVYNKYFDLYKIPCLMVATKADLD  539 (625)
T ss_pred             -cceeeeEEEecccCCchH----HHHHHHHHHHhhhccCCceEEEeeccccc
Confidence             026799999977653322    22222332222222347999999999984

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.25  E-value=0.013  Score=46.08  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+|||||++.|.|..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            4578999999999999999999975

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=97.23  E-value=0.0021  Score=55.03  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ....++++||++.+||||+...|++.
T Consensus       101 ~~GPrv~vVGp~d~GKsTl~r~L~ny  126 (415)
T KOG2749|consen  101 SYGPRVMVVGPTDVGKSTLCRILLNY  126 (415)
T ss_pred             ccCCEEEEECCCccchHHHHHHHHHH
Confidence            34689999999999999999888854

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.21  E-value=0.0048  Score=50.59  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=25.1

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .+...-++++-|..|+||||++.+++..-
T Consensus        48 ~G~pannvLL~G~rGtGKSSlVkall~~y   76 (249)
T PF05673_consen   48 QGLPANNVLLWGARGTGKSSLVKALLNEY   76 (249)
T ss_pred             cCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence            34577899999999999999999999653

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=97.12  E-value=8.1e-06  Score=63.29  Aligned_cols=118  Identities=13%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe---EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF---TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++++++|.-|+||+|++...+........ ..............|++.   .+.+||.+|++..+.+.         ++.
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~y-RAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt---------rVy   95 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHY-RATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT---------RVY   95 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHH-HHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE---------EEE
Confidence            78999999999999999988866521111 011111222223345543   57899999996443322         122


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHH--hcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDN--FGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~--~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...+|+..+|+++..+.-.+...+|.+.+-..  +..+...|++++.||||..
T Consensus        96 ykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e  148 (229)
T KOG4423|consen   96 YKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE  148 (229)
T ss_pred             ecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence            35889999997776543223334444443221  2233346899999999974

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.10  E-value=0.014  Score=41.73  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             EcCCCCcHHHHHHHHhCC-------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           45 MGKGGVGKSSTVNSIIGE-------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        45 vG~~g~GKSSlin~llg~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      -++.|+||||+.-.|...       ++......+..            +-.+.++|||+..+.     .....+      
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~-----~~~~~l------   62 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE-----VSLAAL------   62 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH-----HHHHHH------
Confidence            356999999976554422       21111111111            117899999997432     222223      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      ..+|.++++...+.... ..-..+++.+.+. +.....++.+|+|+
T Consensus        63 ~~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          63 DQADRVFLVTQQDLPSI-RNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             HHcCeEEEEecCChHHH-HHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            27799999966654322 2233445555443 21112467788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.05  E-value=0.0004  Score=54.30  Aligned_cols=52  Identities=23%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEe
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD   93 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viD   93 (243)
                      ..-+++.|++|+||||++..|+... ...-..+.+|..+  ..++.+|+.+.+++
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p--R~gEv~G~dY~Fvs   55 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP--RPGEVDGVDYFFVT   55 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC--CCCCcCCceeEeCC
Confidence            4668999999999999999999776 2222222233322  23445565555544

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.05  E-value=0.01  Score=41.89  Aligned_cols=71  Identities=25%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             EEEEc-CCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           42 ILVMG-KGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        42 IllvG-~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      |++.| +.|+||||+.-.+...-. . .     .......... ....+.++|||+..+.     .....+.      .+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~-~-~-----~~~vl~~d~d-~~~d~viiD~p~~~~~-----~~~~~l~------~a   62 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA-R-R-----GKRVLLIDLD-PQYDYIIIDTPPSLGL-----LTRNALA------AA   62 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH-h-C-----CCcEEEEeCC-CCCCEEEEeCcCCCCH-----HHHHHHH------HC
Confidence            55666 689999998766542211 0 0     0000011111 1156899999997532     2222332      67


Q ss_pred             cEEEEEEeCCC
Q 026113          121 DVLLYVDRLDV  131 (243)
Q Consensus       121 ~~il~v~~~d~  131 (243)
                      |.++++.+.+.
T Consensus        63 d~viv~~~~~~   73 (104)
T cd02042          63 DLVLIPVQPSP   73 (104)
T ss_pred             CEEEEeccCCH
Confidence            99999955543

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.0025  Score=54.99  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=75.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc------------CC-CCCCCeeEEEE----------e------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------TF-QSEGPRPVMVS----------R------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~------------~~-~~~t~~~~~~~----------~------------   82 (243)
                      -++|++++|...+|||||.-.|+....-...            .. .+.|. +....          .            
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTS-sis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTS-SISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccc-ccchhcccccccccccchhhcccHHHHH
Confidence            4689999999999999998887744221100            00 01111 11000          0            


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      +....-++++|.+|........       ..-+....||..++|++.+. ..+...++-+..+..+     ..|+.+++|
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TT-------i~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL-----~iPfFvlvt  311 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTT-------IHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAAL-----NIPFFVLVT  311 (591)
T ss_pred             hhhcceEEEeecccchhhheee-------eeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHh-----CCCeEEEEE
Confidence            0112348899999974221111       11123357899999988774 2444455555555554     269999999


Q ss_pred             CCCCCCCCCCCHHHHHHhhhHHHHHHHcc
Q 026113          163 HAQLSLPDRLDYEVFCSKRSEALLKFVSP  191 (243)
Q Consensus       163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~  191 (243)
                      |+|+.++.  .++..    -+.+.+++.+
T Consensus       312 K~Dl~~~~--~~~~t----v~~l~nll~~  334 (591)
T KOG1143|consen  312 KMDLVDRQ--GLKKT----VKDLSNLLAK  334 (591)
T ss_pred             eeccccch--hHHHH----HHHHHHHHhh
Confidence            99997442  23333    3345555554

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.01  E-value=0.018  Score=44.66  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.|+|||+..+.     .....+      ..+|.++++...+..... .-..+++.+.+. +   .....+|+|+.+..
T Consensus        64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~-~~~~~~~~~~~~-~---~~~~~iv~N~~~~~  127 (179)
T cd02036          64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLR-DADRVKGLLEAL-G---IKVVGVIVNRVRPD  127 (179)
T ss_pred             CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHH-HHHHHHHHHHHc-C---CceEEEEEeCCccc
Confidence            6999999986422     222223      277889999666543222 223345555442 1   14678999999753

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.01  E-value=0.00072  Score=43.31  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      ..++.|++|+||||++.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998765

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.00  E-value=0.017  Score=39.54  Aligned_cols=69  Identities=25%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCc
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID  121 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~  121 (243)
                      +++.|..|+|||++...+...-..  .     ....  ..  .+  .+.++|+|+..+.....  .....      ..+|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~--~-----g~~v--~~--~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~   60 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK--R-----GKRV--LL--ID--DYVLIDTPPGLGLLVLL--CLLAL------LAAD   60 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH--C-----CCeE--EE--EC--CEEEEeCCCCccchhhh--hhhhh------hhCC
Confidence            678899999999998887643210  0     0000  11  11  78999999986432110  01111      3778


Q ss_pred             EEEEEEeCCC
Q 026113          122 VLLYVDRLDV  131 (243)
Q Consensus       122 ~il~v~~~d~  131 (243)
                      .++++...+.
T Consensus        61 ~vi~v~~~~~   70 (99)
T cd01983          61 LVIIVTTPEA   70 (99)
T ss_pred             EEEEecCCch
Confidence            8888855543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.00  E-value=0.0012  Score=53.53  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      +-.+++|++|+||||..+.+.
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             cceEEEcCCCCCccchhhhHH
Confidence            446899999999999876654

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.99  E-value=0.001  Score=52.65  Aligned_cols=26  Identities=19%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ++.-|+|+|++|+|||||++.|+...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            45679999999999999999998764

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.99  E-value=0.0053  Score=53.07  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...+|++.|.+|+||||++|+|+..
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~  183 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALRE  183 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhh
Confidence            4689999999999999999999865

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=96.95  E-value=0.0017  Score=51.76  Aligned_cols=21  Identities=43%  Similarity=0.619  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .-++++|+.|+||||..+++.
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMY   24 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHH
Confidence            457899999999999998886

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=96.95  E-value=0.0031  Score=54.98  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...+.+++++|..++|||||..-|++.
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~   96 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLANK   96 (398)
T ss_pred             ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence            346789999999999999976655543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.93  E-value=0.012  Score=51.10  Aligned_cols=119  Identities=19%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC--------C-----CCCCCee--EEEE--------------------
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--------F-----QSEGPRP--VMVS--------------------   81 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~--------~-----~~~t~~~--~~~~--------------------   81 (243)
                      ...+.+...|....|||||.-+|.-.+.-....        .     .+.+.+.  ..+.                    
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            456889999999999999987766322111000        0     0001110  0000                    


Q ss_pred             -eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEE
Q 026113           82 -RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        82 -~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                       ....++-+.++||-|..       -+++..-+-+....+|-.++++-+|. -.+..-++-+-.+...     ..|+++|
T Consensus       195 vv~~aDklVsfVDtvGHE-------pwLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~-----~lPviVv  261 (527)
T COG5258         195 VVKRADKLVSFVDTVGHE-------PWLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM-----ELPVIVV  261 (527)
T ss_pred             hhhhcccEEEEEecCCcc-------HHHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh-----cCCEEEE
Confidence             01123448899999983       33333333334468899999977764 2333333333222222     2599999


Q ss_pred             EeCCCCCC
Q 026113          161 LTHAQLSL  168 (243)
Q Consensus       161 ~tk~D~~~  168 (243)
                      +||+|+.+
T Consensus       262 vTK~D~~~  269 (527)
T COG5258         262 VTKIDMVP  269 (527)
T ss_pred             EEecccCc
Confidence            99999973

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.91  E-value=0.00064  Score=53.19  Aligned_cols=23  Identities=39%  Similarity=0.710  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .|+++|++|+||||+++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            58999999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.91  E-value=0.013  Score=43.09  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ....+++.|++|+|||++++.+...-
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999988664

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.0018  Score=56.31  Aligned_cols=140  Identities=13%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc------------------------------cccCCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~   86 (243)
                      +.+++++++|..-+||||+...|+...-.                              ......+.|........+...
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            57899999999999999998887744100                              000011112222233445566


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc----cCh-hHHHHHHHHHHHhcccccccEEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VDN-LDKQITRAITDNFGEQIWKRALIVL  161 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~----~~~-~~~~~l~~l~~~~~~~~~~~~ivV~  161 (243)
                      +.+.+.|+||.-..   -.+.+.-.      .++|+-++|+++-...    +.. .+.+--..+.+..|.   .+.|+++
T Consensus       157 ~~ftiLDApGHk~f---v~nmI~Ga------sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lVv~v  224 (501)
T KOG0459|consen  157 KRFTILDAPGHKSF---VPNMIGGA------SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLIVLI  224 (501)
T ss_pred             eeEEeeccCccccc---chhhcccc------chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEEEEE
Confidence            78999999998322   22211111      2566666664431100    111 122223344455553   6899999


Q ss_pred             eCCCCCCCCCCCHHHHHHhhhHHHHHHHc
Q 026113          162 THAQLSLPDRLDYEVFCSKRSEALLKFVS  190 (243)
Q Consensus       162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~  190 (243)
                      ||+|.. ..+++.+.|-+. .+.+..+++
T Consensus       225 NKMddP-tvnWs~eRy~E~-~~k~~~fLr  251 (501)
T KOG0459|consen  225 NKMDDP-TVNWSNERYEEC-KEKLQPFLR  251 (501)
T ss_pred             EeccCC-ccCcchhhHHHH-HHHHHHHHH
Confidence            999853 344554544333 445555555

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.91  E-value=0.024  Score=42.77  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3467899999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.90  E-value=0.00084  Score=49.98  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =.++++|++|+|||||++.|+|...
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CEEEEEccCCCccccceeeeccccc
Confidence            4789999999999999999999864

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.014  Score=44.78  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ..+||.+.|++|+||||++..+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~   26 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIA   26 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHH
Confidence            57899999999999999987766

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.89  E-value=0.0013  Score=49.31  Aligned_cols=21  Identities=38%  Similarity=0.724  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |+++|++|+||||+++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999976

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.85  E-value=0.00089  Score=54.76  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      -+.++|++|||||||+|.+.|-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            468899999999999999998864

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.84  E-value=0.0013  Score=61.70  Aligned_cols=27  Identities=33%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      .-..|+++|.-++||||.++++.|..+
T Consensus        28 ~lP~I~vvG~QSsGKSSvLE~lvG~~f   54 (657)
T KOG0446|consen   28 PLPQIVVVGGQSSGKSSVLESLVGFVF   54 (657)
T ss_pred             cCCceEEecCCCCcchhHHHHhhcccc
Confidence            447899999999999999999999753

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.83  E-value=0.0016  Score=52.44  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+.-|+++|.+|+|||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            5678899999999999999999754

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.81  E-value=0.022  Score=44.35  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999975

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.77  E-value=0.0012  Score=51.72  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =++.++|++|+|||||+|.+.|...
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            4789999999999999999998864

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=96.76  E-value=0.0011  Score=58.99  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=50.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCC---eeEE-EEeeeCC--eEEEEE-----eCCCCCCCCCCcHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---RPVM-VSRSRAG--FTLNIV-----DTPGLIEGGYVNYH  106 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~---~~~~-~~~~~~~--~~~~vi-----DTPG~~~~~~~~~~  106 (243)
                      +.-++.++|.+|+|||||++.|.+.....+......+.   +... ......+  ..-.+|     |+||.-.   ....
T Consensus       156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~---~~~~  232 (434)
T PRK08472        156 KGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRK---YGAF  232 (434)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhh---HHHH
Confidence            44589999999999999999999654222111110000   0000 0001112  134566     7888632   1122


Q ss_pred             HHHHHHHHHhcCCCcEEEEEEeCC
Q 026113          107 AIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus       107 ~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                      ..-.+.+|+.+.+-||+|++.++.
T Consensus       233 ~a~~iAEyFrd~G~~Vll~~DslT  256 (434)
T PRK08472        233 CAMSVAEYFKNQGLDVLFIMDSVT  256 (434)
T ss_pred             HHHHHHHHHHHcCCCEEEecccch
Confidence            233455666567899999996654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.75  E-value=0.0013  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .|++.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

...

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=96.71  E-value=0.029  Score=49.55  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++.+.+.++....+-|.+||+..+||||+|..+...
T Consensus         5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel   40 (492)
T PF09547_consen    5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMEL   40 (492)
T ss_pred             hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHH
Confidence            355667777778999999999999999999998743

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.71  E-value=0.0033  Score=51.38  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=27.0

Q ss_pred             HhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        30 ~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ........++.-|.+.|.+|+|||||++.|.+.-
T Consensus        24 ~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         24 AALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3333444578999999999999999999988653

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.67  E-value=0.0022  Score=51.29  Aligned_cols=26  Identities=31%  Similarity=0.570  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.-.|+++|.+|+|||||++.|.+..
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34679999999999999999998764

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.66  E-value=0.0017  Score=53.37  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..++|++++|++|+|||+|+-.|+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999999888854

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.66  E-value=0.0015  Score=53.00  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      -++++|++|||||||+|.+-+-+.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            578999999999999999988764

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=96.65  E-value=0.0032  Score=53.88  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ...+|++.|.||+|||||+|++++.-
T Consensus       172 ~r~NILisGGTGSGKTTlLNal~~~i  197 (355)
T COG4962         172 IRCNILISGGTGSGKTTLLNALSGFI  197 (355)
T ss_pred             hceeEEEeCCCCCCHHHHHHHHHhcC
Confidence            34899999999999999999999875

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=96.65  E-value=0.023  Score=48.69  Aligned_cols=137  Identities=12%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc----ccC-----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT----VST-----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIE   99 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~------~~~~----~~~-----~~~~t~~~~~~~~~~~~~~~~viDTPG~~~   99 (243)
                      ..+..++|.-+|...-|||||..+|+.-      ..+.    ...     -.+.|........+...+.+-=+|+||.-|
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            4557799999999999999999888722      1111    011     111222222233445667888899999842


Q ss_pred             CCCCcHHHHHHHHHHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113          100 GGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  178 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~  178 (243)
                                ++++.+. ...-|+.++|+....-...+ -++-+ .+.+..|-   +++++.+||.|+.+  +.+.-+.+
T Consensus       130 ----------YIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHl-LLArQVGV---~~ivvfiNKvD~V~--d~e~leLV  192 (449)
T KOG0460|consen  130 ----------YIKNMITGAAQMDGAILVVAATDGPMPQ-TREHL-LLARQVGV---KHIVVFINKVDLVD--DPEMLELV  192 (449)
T ss_pred             ----------HHHHhhcCccccCceEEEEEcCCCCCcc-hHHHH-HHHHHcCC---ceEEEEEecccccC--CHHHHHHH
Confidence                      3343332 13457778886654322222 22222 44555554   68999999999862  22233333


Q ss_pred             HhhhHHHHHHHcc
Q 026113          179 SKRSEALLKFVSP  191 (243)
Q Consensus       179 ~~~~~~l~~~i~~  191 (243)
                         .-++++++..
T Consensus       193 ---EmE~RElLse  202 (449)
T KOG0460|consen  193 ---EMEIRELLSE  202 (449)
T ss_pred             ---HHHHHHHHHH
Confidence               3355555543

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.64  E-value=0.003  Score=54.77  Aligned_cols=26  Identities=31%  Similarity=0.554  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ...+|++.|.+|+||||++|+|++.-
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHccc
Confidence            56899999999999999999999763

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.64  E-value=0.0024  Score=50.52  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+||||++++|++.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5689999999999999999999764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.0071  Score=56.52  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC---------------CCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---------------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~---------------~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      .--+|.++....-|||||+.+|+..+........+               .|...........+..+.+||+||..|...
T Consensus         8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s   87 (887)
T KOG0467|consen    8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS   87 (887)
T ss_pred             ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence            34678889999999999999998664322222111               111111112233567899999999977643


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .-   ....      .-.|..++.+++..    ...-++...+++..-++  ...++|+||+|.
T Consensus        88 ev---ssas------~l~d~alvlvdvve----gv~~qt~~vlrq~~~~~--~~~~lvinkidr  136 (887)
T KOG0467|consen   88 EV---SSAS------RLSDGALVLVDVVE----GVCSQTYAVLRQAWIEG--LKPILVINKIDR  136 (887)
T ss_pred             hh---hhhh------hhcCCcEEEEeecc----ccchhHHHHHHHHHHcc--CceEEEEehhhh
Confidence            22   1111      13455555544432    11223333444443332  478999999994

>PRK07261 topology modulation protein; Provisional

Probab=96.63  E-value=0.0017  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      +|+++|.+|+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999987643

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.55  E-value=0.0079  Score=50.23  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=41.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccC-CCCCCCeeEEEEe---eeCCeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKA-VTVST-FQSEGPRPVMVSR---SRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~-~~~~~-~~~~t~~~~~~~~---~~~~~~~~viDTPG~~~~  100 (243)
                      +-.-|.++|...+|||.|+|.|++... +..+. ..++|........   ...+..+.++||.|+++.
T Consensus        20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~   87 (260)
T PF02263_consen   20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV   87 (260)
T ss_dssp             BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred             CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence            345678999999999999999998642 23332 2233433222221   224568999999999884

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PRK08118 topology modulation protein; Reviewed

Probab=96.52  E-value=0.0023  Score=49.73  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -+|+++|.+|+||||+...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999887744

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.51  E-value=0.0023  Score=51.40  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=96.49  E-value=0.0012  Score=57.57  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      -+|.++..-.+||||....|+-..-+.     +..            ..+.|.........|.|..+.+|||||..|...
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            478888899999999988877321111     111            112222333345678999999999999977654


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .-   .+.++      -.|+++.|++...    .-+.+.+..+++.  ..+..|.+..+||+|..
T Consensus       118 ev---erclr------vldgavav~dasa----gve~qtltvwrqa--dk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  118 EV---ERCLR------VLDGAVAVFDASA----GVEAQTLTVWRQA--DKFKIPAHCFINKMDKL  167 (753)
T ss_pred             EH---HHHHH------HhcCeEEEEeccC----Ccccceeeeehhc--cccCCchhhhhhhhhhh
Confidence            32   22333      5578888855432    1223333333332  23346899999999975

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.49  E-value=0.0021  Score=55.28  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      -++++|++|||||||++.|.|-..
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            467889999999999999998763

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.49  E-value=0.0024  Score=50.09  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +.-.++++|++|+|||||++.+++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            446889999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.47  E-value=0.0025  Score=52.18  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.45  E-value=0.0026  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .||+++|.+||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998866

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.44  E-value=0.0027  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999975

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.43  E-value=0.0028  Score=51.24  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3478999999999999999999975

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.43  E-value=0.0028  Score=51.17  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999975

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.42  E-value=0.0029  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++|+|++|+||||+++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999997653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.42  E-value=0.003  Score=50.80  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++..|.+.|.+|+|||||++.|.+.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999998864

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.41  E-value=0.0029  Score=51.24  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568999999999999999999974

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.41  E-value=0.003  Score=49.97  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=96.41  E-value=0.029  Score=48.27  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=63.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC----ccc-ccCCC-----------CC-------CCeeEEEEee-------------eC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEK----AVT-VSTFQ-----------SE-------GPRPVMVSRS-------------RA   85 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~----~~~-~~~~~-----------~~-------t~~~~~~~~~-------------~~   85 (243)
                      .++.|-=|||||||+|.|+...    ++. +..+.           ..       +..|..|...             ..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            4778999999999999999552    111 11110           01       1123333311             22


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHH-HHH-hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIK-RFL-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~-~~~-~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      +....+|.|-|+.++...-   ..... ..+ .....|.++-|  +|..++........+.+.+...    --=++|+||
T Consensus        84 ~~D~ivIEtTGlA~P~pv~---~t~~~~~~l~~~~~ld~vvtv--VDa~~~~~~~~~~~~~~~~Qia----~AD~ivlNK  154 (323)
T COG0523          84 RPDRLVIETTGLADPAPVI---QTFLTDPELADGVRLDGVVTV--VDAAHFLEGLDAIAELAEDQLA----FADVIVLNK  154 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHH---HHhccccccccceeeceEEEE--EeHHHhhhhHHHHHHHHHHHHH----hCcEEEEec
Confidence            3468899999997662111   11111 011 12356778888  5544443333222233333222    245899999


Q ss_pred             CCCCCC
Q 026113          164 AQLSLP  169 (243)
Q Consensus       164 ~D~~~~  169 (243)
                      .|+.++
T Consensus       155 ~Dlv~~  160 (323)
T COG0523         155 TDLVDA  160 (323)
T ss_pred             ccCCCH
Confidence            999743

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.39  E-value=0.003  Score=51.16  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999975

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.39  E-value=0.003  Score=50.50  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999999975

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.38  E-value=0.0031  Score=50.47  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.37  E-value=0.0028  Score=47.36  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |+++|.+|+||||++..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998844

...

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.37  E-value=0.0029  Score=50.91  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|+|||||++.|.|..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999999874

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.37  E-value=0.0032  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999999975

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.36  E-value=0.073  Score=48.41  Aligned_cols=46  Identities=13%  Similarity=0.039  Sum_probs=29.8

Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .-.+|+|.++..... ..+...++.+...+-...+.|+|+++|-+..
T Consensus       194 ~~~liLveDLPn~~~-~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~  239 (634)
T KOG1970|consen  194 DKKLILVEDLPNQFY-RDDSETFREVLRLYVSIGRCPLIFIITDSLS  239 (634)
T ss_pred             CceEEEeeccchhhh-hhhHHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            445688866643222 2255666666666666777899999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.35  E-value=0.003  Score=52.13  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      =-+.++|+.|+|||||+.+++|-
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999994

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.35  E-value=0.0033  Score=50.58  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478899999999999999999975

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.34  E-value=0.0033  Score=45.03  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            568999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.33  E-value=0.0033  Score=51.19  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          26 GEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4578999999999999999999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.32  E-value=0.003  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .++++|.+||||||+++.|.+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.32  E-value=0.0036  Score=50.30  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999975

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.31  E-value=0.0032  Score=49.89  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=-++++|++|||||||+|.+.|.-
T Consensus        31 ge~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          31 GELVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             CCEEEEEcCCCccHHHHHHHHhcCc
Confidence            3467888999999999999999875

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.31  E-value=0.086  Score=44.67  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc------------
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN------------  104 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~------------  104 (243)
                      .....++++|++|.|||+++..+....... .+ +  .         ....+|.++.+|.-.+.....            
T Consensus        59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~--~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~  125 (302)
T PF05621_consen   59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-E--D---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYR  125 (302)
T ss_pred             cCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-C--C---------CccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence            355789999999999999999988655211 10 0  0         112367788887765421111            


Q ss_pred             -----HHHHHHHHHHHhcCCCcEEEEEEeCCC-cc-cChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113          105 -----YHAIQLIKRFLLNKTIDVLLYVDRLDV-YR-VDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus       105 -----~~~~~~~~~~~~~~~~~~il~v~~~d~-~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                           .+........+..-++-++++= -+.. .. .....+.++..++. +|++...|+|.|+|.-
T Consensus       126 ~~~~~~~~~~~~~~llr~~~vrmLIID-E~H~lLaGs~~~qr~~Ln~LK~-L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  126 PRDRVAKLEQQVLRLLRRLGVRMLIID-EFHNLLAGSYRKQREFLNALKF-LGNELQIPIVGVGTRE  190 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCcEEEee-chHHHhcccHHHHHHHHHHHHH-HhhccCCCeEEeccHH
Confidence                 1111111222222344433321 1211 01 12335556655555 4777778999999874

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.30  E-value=0.014  Score=49.79  Aligned_cols=25  Identities=36%  Similarity=0.628  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ....|++.|.+|+||||++++|++.
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~  155 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAE  155 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999865

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.30  E-value=0.0036  Score=51.49  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3478999999999999999999875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.29  E-value=0.004  Score=48.10  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578899999999999999999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.29  E-value=0.0039  Score=48.82  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.+.++|++|+|||||++.|.|..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.29  E-value=0.0037  Score=50.52  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|+|..
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3467899999999999999999975

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.29  E-value=0.0037  Score=51.08  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999885

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.29  E-value=0.0038  Score=50.58  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478899999999999999999985

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.28  E-value=0.0036  Score=50.10  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      |++|.++|..|+|||||++.+++.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            579999999999999999988864

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00235 udk uridine kinase

Probab=96.28  E-value=0.0039  Score=50.12  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +..-|.++|.+|+|||||++.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.28  E-value=0.0037  Score=50.59  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.28  E-value=0.0038  Score=50.18  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.27  E-value=0.0038  Score=50.92  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.27  E-value=0.0039  Score=50.43  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999975

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.26  E-value=0.0032  Score=50.28  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      -|+++|++|+||||+++++++.-
T Consensus         3 lilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999988654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06217 hypothetical protein; Validated

Probab=96.26  E-value=0.0038  Score=49.15  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+|+|+|.+|+||||+...|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999987743

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.26  E-value=0.004  Score=50.31  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|.+|+|||||++.|.|..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            3578999999999999999999975

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.25  E-value=0.0038  Score=50.25  Aligned_cols=25  Identities=28%  Similarity=0.504  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          25 GEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3468999999999999999999975

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.25  E-value=0.0039  Score=51.83  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999975

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.25  E-value=0.004  Score=50.94  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999999974

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.24  E-value=0.0045  Score=40.54  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |++.|.+|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999988754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.24  E-value=0.0042  Score=49.45  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|+|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999975

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.24  E-value=0.0032  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      ||+++|..|+|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998855

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.24  E-value=0.0042  Score=49.38  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|.+|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999975

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.23  E-value=0.0041  Score=51.01  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3478999999999999999999875

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.22  E-value=0.021  Score=44.64  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-+.++|.+|+|||||+..+...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            456899999999999999998855

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0039  Score=56.70  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      -+++++|.+|+|||||+|.|+|...
T Consensus       348 ~~talvG~SGaGKSTLl~lL~G~~~  372 (559)
T COG4988         348 QLTALVGASGAGKSTLLNLLLGFLA  372 (559)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCC
Confidence            4899999999999999999999864

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.21  E-value=0.0044  Score=49.77  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=.++++|++|+|||||++.|.|..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999999975

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.21  E-value=0.0043  Score=50.43  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=.++++|++|+|||||++.|.|..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999999975

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.21  E-value=0.0044  Score=49.69  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          26 GEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            4577899999999999999999975

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.20  E-value=0.0045  Score=49.46  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.-.+.++|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34588999999999999999999875

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.20  E-value=0.0043  Score=50.97  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .=.++++|++|+|||||++.|.|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        26 GEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999997

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.19  E-value=0.0046  Score=49.34  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=.++++|++|+|||||++.|.|..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999999975

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.19  E-value=0.0046  Score=49.75  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999975

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.18  E-value=0.0043  Score=50.74  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3468999999999999999999874

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.18  E-value=0.0048  Score=47.78  Aligned_cols=26  Identities=31%  Similarity=0.422  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=.++++|.+|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999999985

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.18  E-value=0.0048  Score=48.41  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=.++++|++|+|||||++.|.|..
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999999975

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.18  E-value=0.0078  Score=46.88  Aligned_cols=28  Identities=21%  Similarity=0.500  Sum_probs=17.9

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ....+-.+++.|.+|+|||++++.+...
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3346788999999999999999987754

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.18  E-value=0.0046  Score=49.94  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         37 GEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999975

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.17  E-value=0.0047  Score=50.64  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        27 GEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4578899999999999999999875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.0044  Score=51.33  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .=.++++|++|+|||||++.|.|.
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         32 NQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999986

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.17  E-value=0.0048  Score=48.49  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.17  E-value=0.0055  Score=44.75  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+|||+++..+...-
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcc
Confidence            3578999999999999999998764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
3bb1_A	274	Crystal Structure Of Toc34 From Pisum Sativum In Co		2e-84
1h65_A	270	Crystal Structure Of Pea Toc34-A Novel Gtpase Of Th		2e-83
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		5e-78
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		7e-78
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-77
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		3e-77

>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274

Iteration: 1
 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/225 (67%), Positives = 177/225 (78%), Gaps = 1/225 (0%)
Query: 1   MSMASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSII 60
           M+   Q +R W GI  F PATQT          QE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1   MASQQQTVRGWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61  GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
           GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTI
Sbjct: 61  GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
           DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           RSEALL+ V     + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 181 RSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224

>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The Chloroplast Protein Translocon Length = 270

Iteration: 1
 Score =  305 bits (781), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 174/220 (79%), Gaps = 1/220 (0%)
Query: 6   QVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAV 65
           Q +REW GI  F PATQT          QE+VN+LTILV GKGGVGKSSTVNSIIGE+ V
Sbjct: 6   QTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVV 65
Query: 66  TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 125
           ++S FQSEGPRPV VSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTIDVLLY
Sbjct: 66  SISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYINDXALNIIKSFLLDKTIDVLLY 125
Query: 126 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL 185
           VDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SKRSEAL
Sbjct: 126 VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEAL 185
Query: 186 LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
           L+ V     + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 186 LQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score =  287 bits (734), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 174/224 (77%), Gaps = 2/224 (0%)
Query: 7   VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
           ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct: 4   LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67  VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
           VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64  VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPN 225

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score =  286 bits (732), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 173/226 (76%), Gaps = 2/226 (0%)
Query: 7   VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
           ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct: 4   LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67  VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
           VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64  VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS+ LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDELL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
           K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+  
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGE 227

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 173/226 (76%), Gaps = 2/226 (0%)
Query: 7   VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
           ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct: 4   LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67  VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
           VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64  VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLDVY VD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
           K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+  
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGE 227

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score =  284 bits (726), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 173/226 (76%), Gaps = 2/226 (0%)
Query: 7   VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
           ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct: 3   LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 62
Query: 67  VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
           VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 63  VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 122
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLDVY VD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 123 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 182
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
           K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+  
Sbjct: 183 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGE 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	5e-76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	9e-75
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	3e-30
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	9e-28
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	4e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	5e-09
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	1e-05
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	2e-05
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	3e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	1e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	4e-04

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  230 bits (587), Expect = 5e-76
 Identities = 141/228 (61%), Positives = 181/228 (79%), Gaps = 2/228 (0%)

Query: 7   VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
           ++REW+G QQFP ATQ KL+E  GKLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+ V 
Sbjct: 4   LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63

Query: 67  VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
           VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64  VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123

Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
           DRLDVY VD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183

Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQ 234
           K +   + M+K++ + S + VV  ENSGRC+KN+ DEK   LP+    
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGEAW 229

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  227 bits (579), Expect = 9e-75
 Identities = 163/230 (70%), Positives = 189/230 (82%), Gaps = 3/230 (1%)

Query: 1   MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60
           M+   Q +REW GI  F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1   MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60

Query: 61  GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
           GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTI
Sbjct: 61  GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120

Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
           DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180

Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
           RSEALL+ V       KKD Q S +PVVL+ENSGRC KN++DEKV  LP+
Sbjct: 181 RSEALLQVVRSGA-SLKKDAQASDIPVVLIENSGRCNKNDSDEKV--LPN 227

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  112 bits (280), Expect = 3e-30
 Identities = 46/223 (20%), Positives = 83/223 (37%), Gaps = 21/223 (9%)

Query: 20  ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-QSEGPRPV 78
             +    +     ++   + L I+++GK G GKS+T NSI+G K     T  +S   +  
Sbjct: 10  GRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE 69

Query: 79  MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDN 136
             S S     L +VDTPG+ +    N    + I R +L  +     LL V  L   R   
Sbjct: 70  KRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG--RYTE 127

Query: 137 LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVS------ 190
            + + T  I   FGE+     +++ T          +   +  +  E +   +       
Sbjct: 128 EEHKATEKILKMFGERARSFMILIFTRK--DDLGDTNLHDYLREAPEDIQDLMDIFGDRY 185

Query: 191 ----PSTWMKKKDIQGS----FVPVVLVENSGRCAKNENDEKV 225
                     +++ Q +     +  V+ EN   C  N   ++ 
Sbjct: 186 CALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRA 228

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  105 bits (264), Expect = 9e-28
 Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 20/208 (9%)

Query: 30  GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFT 88
            K +  + + L I+++GK G GKS+  NSI+ ++A       Q+          S     
Sbjct: 13  AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72

Query: 89  LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDNLDKQITRAIT 146
           + I+DTP +           + ++R  L       VLL V +L   R  + D+Q  + + 
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVK 130

Query: 147 DNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP----------STWMK 196
           + FGE      +++ TH +      L  +      ++AL K V+                
Sbjct: 131 EIFGEDAMGHTIVLFTHKEDLNGGSLM-DYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189

Query: 197 KKDIQGS----FVPVVLVENSGRCAKNE 220
            +D Q       +  +L+E +G    N 
Sbjct: 190 NQDDQVKELMDCIEDLLMEKNGDHYTNG 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 4e-12
 Identities = 45/292 (15%), Positives = 83/292 (28%), Gaps = 75/292 (25%)

Query: 5   SQVIREWMGIQQFPPATQT---KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61
            Q  R +   Q F     +     L+L   L +       +L+ G  G GK+     +  
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCL 172

Query: 62  EKAV-----------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 110
              V            +    S      M+ +       N            +  H+IQ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 111 -IKRFLLNKT-IDVLLYVDRLDVYR---VDNLDKQ-----ITR--AITDNFGEQIWKRAL 158
            ++R L +K   + LL +   +V      +  +        TR   +TD          L
Sbjct: 233 ELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTD---------FL 281

Query: 159 IVLTHAQLSLPDRLDYEVFCSKRSEALL-KFVSPSTWMKKKDI-----QGSFVPVVLV-- 210
              T   +SL              ++LL K++      + +D+       +  P  L   
Sbjct: 282 SAATTTHISLDHHSM--TLTPDEVKSLLLKYL----DCRPQDLPREVLTTN--PRRLSII 333

Query: 211 -----ENSGRCA--KNENDEKVS--------QLPDNRIQCC------FPRNV 241
                +        K+ N +K++         L     +        FP + 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 70/196 (35%)

Query: 99  EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRA 157
           E G   Y    ++  F          +VD  D   V ++ K I ++   D+         
Sbjct: 10  ETGEHQYQYKDILSVFEDA-------FVDNFDCKDVQDMPKSILSKEEIDH--------- 53

Query: 158 LIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS-----TWM----KKKDIQGSFVPVV 208
            I+++   +S   RL +    SK+ E + KFV         ++    K +  Q S +  +
Sbjct: 54  -IIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 209 LVENSGRCAKNEND----------EKVSQL--------P--------------------- 229
            +E   R   N+N           +   +L        P                     
Sbjct: 112 YIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 230 --DNRIQCCFPRNVFY 243
               ++QC     +F+
Sbjct: 171 CLSYKVQCKMDFKIFW 186

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 55.1 bits (132), Expect = 5e-09
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 19  PATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---EGP 75
             T + + + L ++    +N   + V G+ G GKSS +N++ G         ++   E  
Sbjct: 52  QLTNSAISDALKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108

Query: 76  RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD 135
                 +      +   D PG+   G  N+     +++    +  D  + +      +  
Sbjct: 109 MERHPYKHPNIPNVVFWDLPGI---GSTNFPPDTYLEKMKFYE-YDFFIIISATRFKKN- 163

Query: 136 NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195
             D  I +AI       + K    V T     + +  D E     + E +L+ +  +   
Sbjct: 164 --DIDIAKAI-----SMMKKEFYFVRTKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVN 215

Query: 196 KKKDIQGSFVPVVLVENS 213
             ++   +  P+ L+ N 
Sbjct: 216 TFRENGIAEPPIFLLSNK 233

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP---------VMVSRSRAGFTL 89
             T++V+G+ G+GKS+ +NS+      +                    V++        L
Sbjct: 8   EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67

Query: 90  NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI 141
            IVDTPG       N +  Q +  ++ +K  D L       V R    D ++
Sbjct: 68  TIVDTPGF-GDAVDNSNCWQPVIDYIDSKFEDYLN--AESRVNRRQMPDNRV 116

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 13/113 (11%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG----------PRPVMVSRSRAGFT 88
             T++V+G+ G+GKS+ +NS+                            V +        
Sbjct: 18  EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77

Query: 89  LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI 141
           L +VDTPG            + I  ++  +    L   D   + R   +D ++
Sbjct: 78  LTVVDTPGY-GDAINCRDCFKTIISYIDEQFERYLH--DESGLNRRHIIDNRV 127

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 13  GIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKG--GVGKSSTVNSIIGEKAVTVSTF 70
           G+ Q  PA++  L E   +++ + V    I  +  G   VGKS+ +N +  +        
Sbjct: 92  GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT--- 148

Query: 71  QSEGPRP---VMVSRSRAGFTLNIVDTPGLI 98
              G RP         + G  L ++DTPG++
Sbjct: 149 ---GDRPGITTSQQWVKVGKELELLDTPGIL 176

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 29  LGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
              L   N +  TI++ G   VGKSS +N +     V V ++        +         
Sbjct: 19  FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNK 77

Query: 89  LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT--RAIT 146
             I+DTPGL++  + N + I++     L     V+L++  +       + +QI    +I 
Sbjct: 78  YQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK 137

Query: 147 DNFGEQIWKRALIVLTHAQLSLPDRLDYE 175
             F     K  +I          D L  +
Sbjct: 138 SVFSN---KSIVIGFNKIDKCNMDSLSID 163

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 39  TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-----PRPVMVSRSRAGFTLNIVD 93
              IL +G+ G+GKS+ ++++   K        ++           +  S     L IV 
Sbjct: 42  CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101

Query: 94  TPGLIEGGYVNYHAIQLIKRFLLNK 118
           T G  +       + + I  F+  +
Sbjct: 102 TVGFGD-QINKEDSYKPIVEFIDAQ 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	100.0
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	100.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.92
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.91
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.83
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.75
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.75
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.75
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.75
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.73
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.72
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.71
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.71
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.71
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.71
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.71
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.7
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.7
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.7
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.7
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.7
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.7
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.7
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.7
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.69
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.69
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.69
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.69
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.69
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.69
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.69
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.69
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.69
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.69
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.69
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.69
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.69
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.69
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.68
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.68
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.68
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.68
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.68
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.67
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.67
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.67
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.67
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.67
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.66
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.66
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.66
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.66
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.66
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.66
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.66
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.66
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.65
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.65
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.65
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.65
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.65
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.65
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.65
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.65
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.65
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.65
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.65
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.64
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.64
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.64
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.64
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.64
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.64
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.64
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.64
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.64
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.64
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.63
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.63
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.63
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.63
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.63
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.63
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.63
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.63
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.63
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.63
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.63
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.62
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.62
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.62
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.62
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.62
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.62
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.62
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.61
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.61
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.61
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.61
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.61
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.61
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.6
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.59
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.59
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.59
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.58
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.58
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.58
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.58
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.57
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.57
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.56
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.56
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.56
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.56
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.56
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.54
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.53
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.53
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.53
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.53
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.51
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.51
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.5
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.49
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.49
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.49
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.48
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.22
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.48
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.47
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.45
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.45
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.44
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.44
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.42
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.42
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.38
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.38
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.38
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.37
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.36
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.36
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.33
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.33
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.32
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.3
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.3
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.3
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.29
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.26
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.25
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.25
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.23
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.23
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.23
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.23
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.22
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.22
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.22
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.21
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.18
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.18
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.18
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.18
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.17
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.16
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.15
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.14
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.13
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.11
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.07
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.07
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.06
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.03
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.02
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.0
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.97
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.96
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.9
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.86
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.82
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.7
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.7
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.69
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.69
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.6
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.6
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.59
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.57
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.55
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.54
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.42
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.16
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.13
2xxa_A	433	Signal recognition particle protein; protein trans	98.09
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.98
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.95
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.91
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.82
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.75
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.66
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.65
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.58
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.56
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.51
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.48
2og2_A	359	Putative signal recognition particle receptor; nuc	97.45
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.45
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.42
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.34
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.32
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.26
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.25
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.25
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.23
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.07
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.0
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.93
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.93
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.81
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.74
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.73
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.72
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.71
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.7
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.7
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.68
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.66
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.61
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.59
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.58
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.57
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.57
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.57
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.57
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.57
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.57
1g6h_A	257	High-affinity branched-chain amino acid transport	96.56
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.54
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.52
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.51
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.5
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.49
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.49
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.48
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.48
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.46
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.45
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.44
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.4
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.38
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.38
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.37
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.37
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.36
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.34
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.31
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.31
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.3
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.3
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.29
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.28
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.26
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.25
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.25
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.25
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.23
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.22
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.21
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.2
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.2
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.18
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.16
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.16
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.13
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.12
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.11
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.06
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.05
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.04
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.02
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.01
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.0
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.99
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.98
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.97
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.96
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.94
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.94
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.94
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.93
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.92
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.92
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.91
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.91
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.9
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.9
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.88
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.86
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.85
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.85
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.83
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.83
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.83
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.81
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.8
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.78
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.78
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.78
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.78
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.77
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.75
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.7
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.69
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.68
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.67
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.67
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.66
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.65
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.64
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.64
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.61
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.58
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.57
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.57
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.57
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.53
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.53
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.51
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.51
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.48
3co5_A	143	Putative two-component system transcriptional RES	95.47
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.46
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.45
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.45
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.45
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.43
3end_A	307	Light-independent protochlorophyllide reductase ir	95.43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.4
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.4
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.36
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.35
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.33
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.33
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.32
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.3
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.3
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.28
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.26
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.25
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.25
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.25
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.23
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.22
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.21
1via_A	175	Shikimate kinase; structural genomics, transferase	95.21
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.19
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.18
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.16
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.13
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.12
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.07
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.07
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.04
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.04
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.01
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.0
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.0
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.99
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.98
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.98
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.97
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.95
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.94
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.93
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.9
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.88
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.88
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.87
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.83
3bos_A	242	Putative DNA replication factor; P-loop containing	94.8
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.8
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.78
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.77
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.75
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.73
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.72
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.71
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.7
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.68
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.68
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.67
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.66
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.61
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.6
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.58
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.54
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.5
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.45
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.44
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.42
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.38
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.27
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.19
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.14
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.09
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.05
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.05
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.01
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.93
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.9
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.88
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.88
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	93.85
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	93.85
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	93.81
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.8
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.78
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.77
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	93.71
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.7
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.69
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	93.68
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.66
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.6
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.59
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	93.56
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.51
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.51
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.49
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	93.47
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	93.46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.43
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.41
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.39
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	93.29
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.28
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	93.28
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.25
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.21
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	93.17
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.15
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.15

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=100.00  E-value=1.3e-33  Score=234.60  Aligned_cols=231  Identities=61%  Similarity=0.989  Sum_probs=196.2

Q ss_pred             chhhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC
Q 026113            7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~   86 (243)
                      +.++|.++.+++...+..+.+..+++.....++++|+++|.+|+|||||+|+|++...+.+...+++|.........+.+
T Consensus         4 ~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~   83 (262)
T 3def_A            4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG   83 (262)
T ss_dssp             --CBCHHHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT
T ss_pred             chhhHHHHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC
Confidence            56899999999999999999998888887778999999999999999999999999876677777777777777778899


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+|||||+.+.....+...+.+.+++..+++|++|+|++++..+++..+..+++.+.+.++...++|+++|+||+|+
T Consensus        84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A           84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred             eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence            99999999999988777778888888888778999999999998767778888999999999998888899999999999


Q ss_pred             CCCCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceecc
Q 026113          167 SLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPR  239 (243)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~~  239 (243)
                      .+++...++++++...+.++++++.+.+......+...+|..+++|.+.|..|...+..  ||++.+|+..+-
T Consensus       164 ~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~--lp~~~~w~~~~~  234 (262)
T 3def_A          164 SPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGEAWIPNLV  234 (262)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBB--CTTSCBSCC-CH
T ss_pred             CCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeE--CCCCCeeHHHHH
Confidence            77777889999988777899998876654433222234788889999999999999988  999999998764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=100.00  E-value=3.6e-33  Score=232.86  Aligned_cols=231  Identities=71%  Similarity=1.084  Sum_probs=193.3

Q ss_pred             cccc--chhhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEE
Q 026113            3 MASQ--VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV   80 (243)
Q Consensus         3 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~   80 (243)
                      |+++  +.++|.|...++.+..+.+.+.+.+....+...++|+++|.+|+|||||+|+|++.....++..++++......
T Consensus         1 m~~~~~~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~   80 (270)
T 1h65_A            1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV   80 (270)
T ss_dssp             -------CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred             CCcchhhhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence            5665  88999999999999999999999888877777899999999999999999999998866666666667666666


Q ss_pred             EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEE
Q 026113           81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      .....+..+.+|||||+.+.........+.+.+++...++|++|||++++..+++..+..+++.+.+.++...+.|+++|
T Consensus        81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV  160 (270)
T 1h65_A           81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA  160 (270)
T ss_dssp             EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence            77788999999999999887766666666777776667899999999998766777888999999999998878899999


Q ss_pred             EeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccce
Q 026113          161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCC  236 (243)
Q Consensus       161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~  236 (243)
                      +||+|+.+++..+++++.+...+.+++.++++.++.... +...+|.+++++.+.|+++...+++  +|...+|..
T Consensus       161 ~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~p~~~v~~~~~~~~~~~~~~v--~~~~~~w~~  233 (270)
T 1h65_A          161 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDA-QASDIPVVLIENSGRCNKNDSDEKV--LPNGIAWIP  233 (270)
T ss_dssp             EECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTS-GGGCCCEEECCCCTTCCBCTTSCBB--CTTSCBHHH
T ss_pred             EECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh-hhccCCEEEEeCCCcccccCCCceE--CCCCCCcHH
Confidence            999999866777899999887888998888777765432 2346899999999999999998888  999999974

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=2.7e-24  Score=175.83  Aligned_cols=184  Identities=24%  Similarity=0.274  Sum_probs=121.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC--CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ--SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|+|+|...+. ...+  +.|..+......+.+..+.||||||+.+......+..+.+.++
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            367999999999999999999999988633 3333  4566677777788999999999999998776666666666665


Q ss_pred             H--hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccc
Q 026113          115 L--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS  192 (243)
Q Consensus       115 ~--~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~  192 (243)
                      +  ..+++|++|+|++++  +++..+..+++.+.+.++...+.|+++|+||+|+.  +...+++++....+.++++++.+
T Consensus       106 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHc
Confidence            4  346899999998876  56677889999999999877778999999999986  33457777776667788888775


Q ss_pred             c-CCccccc---------c----CCCccchhhhcCCCCCCCcCcccc
Q 026113          193 T-WMKKKDI---------Q----GSFVPVVLVENSGRCAKNENDEKV  225 (243)
Q Consensus       193 ~-~~~~~~~---------~----~~~i~~~~~~~~~~~~~~~~~~~~  225 (243)
                      + ++.....         +    ...|..++.+|++.+|++.+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~  228 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRA  228 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC--------
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence            3 4432211         1    135667778899999999887655

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.83  E-value=4.3e-19  Score=146.55  Aligned_cols=151  Identities=23%  Similarity=0.274  Sum_probs=111.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-CCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ...++|+++|.+|+|||||+|+|++...+.....+. +|..+......+.+..+.||||||+.+.........+.+.+++
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            367999999999999999999999988655544443 5666666677788999999999999877655555443444332


Q ss_pred             --hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe-CCCCCCCCCCCHHHHHHhh-hHHHHHHHcc
Q 026113          116 --LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT-HAQLSLPDRLDYEVFCSKR-SEALLKFVSP  191 (243)
Q Consensus       116 --~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~  191 (243)
                        ..+++|++|+|++++  ++...+..+++++.+.++.....|.++|+| |+|+..   ..+..++... .+.++++++.
T Consensus       100 ~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A          100 LLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHH
T ss_pred             HhcCCCCcEEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHHH
Confidence              237899999998876  467777788889999888766678888888 999852   2466655432 2455666655


Q ss_pred             c
Q 026113          192 S  192 (243)
Q Consensus       192 ~  192 (243)
                      +
T Consensus       175 ~  175 (260)
T 2xtp_A          175 C  175 (260)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.75  E-value=2.8e-17  Score=138.69  Aligned_cols=124  Identities=21%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~  116 (243)
                      +..+|+++|.+|+|||||+|+|+|.....++..+.+|...........+.++.+|||||+.++...-.+ .......++ 
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l-   84 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL-   84 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH-
Confidence            457899999999999999999999987666666666766655555677889999999999865432112 122222233 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++|+|++++. ..+..+..+++.+.+.++   ..|+++|+||+|+.
T Consensus        85 -~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           85 -ADVNAVVWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAA  130 (301)
T ss_dssp             -SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGC
T ss_pred             -hcCCEEEEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccC
Confidence             68999999988764 255555544455544321   36999999999985

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.75  E-value=1.7e-17  Score=133.35  Aligned_cols=124  Identities=19%  Similarity=0.171  Sum_probs=89.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcH---HHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNY---HAIQLIK  112 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~~---~~~~~~~  112 (243)
                      ..++|+++|.+|+|||||+|+|++.. ...+...+++|......... ..+..+.+|||||+.+......   .+...+.
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            56899999999999999999999987 44556666666655544444 5577899999999876543332   2233334


Q ss_pred             HHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          113 RFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       113 ~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++. ...+|++++|++... .++..+..+++++..     ...|+++|+||+|+.
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAP-----TGKPIHSLLTKCDKL  157 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGG-----GCCCEEEEEECGGGS
T ss_pred             HHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHh-----cCCCEEEEEeccccC
Confidence            4442 356899999977754 356667777666654     236999999999986

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.75  E-value=1.5e-17  Score=128.88  Aligned_cols=125  Identities=18%  Similarity=0.219  Sum_probs=86.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~  116 (243)
                      +..+|+++|.+|+|||||+|+|++.....+...++++.........+++..+.+|||||+.+.....+. .......++ 
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-   81 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI-   81 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH-
Confidence            468999999999999999999999875445566666666666666778889999999999654321111 111111122 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|+++.... +..+..++..+.+....  ..|+++|+||+|+.
T Consensus        82 -~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~  128 (172)
T 2gj8_A           82 -EQADRVLFMVDGTTTD-AVDPAEIWPEFIARLPA--KLPITVVRNKADIT  128 (172)
T ss_dssp             -HTCSEEEEEEETTTCC-CCSHHHHCHHHHHHSCT--TCCEEEEEECHHHH
T ss_pred             -HhCCEEEEEEECCCCC-CHHHHHHHHHHHHhccc--CCCEEEEEECccCC
Confidence             4899999998875432 22355666666655432  36999999999984

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.75  E-value=4.5e-17  Score=123.83  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      .+|+++|.+|+|||||+|++++.........++.+...........+..+.+|||||+................++  ..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--ED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--Hh
Confidence            5899999999999999999998875444555555656666667778889999999999765433333333333333  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|++++|++... ..+..+..+.+++..     ...|+++|+||+|+.
T Consensus        80 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           80 AEVVLFAVDGRA-ELTQADYEVAEYLRR-----KGKPVILVATKVDDP  121 (161)
T ss_dssp             CSEEEEEEESSS-CCCHHHHHHHHHHHH-----HTCCEEEEEECCCSG
T ss_pred             CCEEEEEEECCC-cccHhHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence            999999988764 245555555555544     136999999999985

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=2.5e-17  Score=137.23  Aligned_cols=124  Identities=20%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccC-------CCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcH---
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNY---  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~---  105 (243)
                      ..++|+++|.+|+|||||+|+|++...+....       .++.+..........++.  .+.+|||||+++......   
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            46999999999999999999999988655432       222333333344444553  899999999976533221   


Q ss_pred             HHHHH----HHHHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQL----IKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~----~~~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ....+    +..++.           ...+|++++++......+...+..+++.+..      ..|+++|+||+|+.
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  157 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence            11111    122221           2358899999655443467777776666654      37999999999985

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.73  E-value=9.3e-17  Score=129.92  Aligned_cols=135  Identities=21%  Similarity=0.240  Sum_probs=84.1

Q ss_pred             hhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHH
Q 026113           32 LKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQ  109 (243)
Q Consensus        32 ~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~--~~~  109 (243)
                      ++......++|+++|.+|+|||||+|+|++.... +...+.+|...........+..+.+|||||+.+.......  ...
T Consensus        22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence            3333346799999999999999999999998753 4445555555555555667889999999999754322211  112


Q ss_pred             HHHHHHhcCCCcEEEEEEeCCCcc-cC-hhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          110 LIKRFLLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       110 ~~~~~~~~~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                      .+..+.  ..+|++|+|++++... +. .....++..+...+   ...|+++|+||+|+.+.+..
T Consensus       101 ~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~  160 (228)
T 2qu8_A          101 TITALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNMDSL  160 (228)
T ss_dssp             HHHHHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CC
T ss_pred             HHHHhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCchhh
Confidence            223222  5789999998886432 32 12234444443322   13799999999999754443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.72  E-value=6e-17  Score=130.36  Aligned_cols=128  Identities=13%  Similarity=0.107  Sum_probs=85.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.+||+|+|.+|+|||||++.+++... .....++.+.+.........+  ..+.||||+|+........   .++    
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~---~~~----   83 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP---SYI----   83 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH---HHH----
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH---HHh----
Confidence            568999999999999999999997652 222223333333333334444  4788999999965533222   122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                        .+++++++|++++.....+....|+..+....+.+  .|+++|+||+|+.+.+..+.++.
T Consensus        84 --~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~  141 (216)
T 4dkx_A           84 --RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEG  141 (216)
T ss_dssp             --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHH
T ss_pred             --ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHH
Confidence              59999999999976544455667888887776654  59999999999976666666544

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=123.78  Aligned_cols=124  Identities=17%  Similarity=0.104  Sum_probs=83.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++.... ....++.+...........+  ..+.+|||||..+.......   .+   
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~---   79 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST---YY---   79 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGG---GG---
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHH---Hh---
Confidence            35699999999999999999999988743 33334444444445555666  57999999997544333221   11   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                         ..+|++++|++++..........++..+.....   ..|+++|+||+|+.+.+...
T Consensus        80 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~  132 (181)
T 3tw8_B           80 ---RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVE  132 (181)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSC
T ss_pred             ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccC
Confidence               589999999888653322333455655655432   36999999999986444443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.71  E-value=1.4e-16  Score=134.83  Aligned_cols=123  Identities=21%  Similarity=0.299  Sum_probs=90.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCc---HHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVN---YHAIQLIK  112 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~---~~~~~~~~  112 (243)
                      ..+-.|+++|.+|+|||||+|+|+|.....++..+.+|........... +.++.+|||||+.+.....   +.......
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            4678999999999999999999999987767777777877777777777 8899999999998765211   22222333


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHH-HHHHHHHhcccccccEEEEEeCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++  ..+|++++|++++.. .+..+... ++.+..     ...|+++|+||+|+.
T Consensus        88 ~~l--~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           88 QSL--EEADVILFMIDATEG-WRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI  135 (308)
T ss_dssp             HHH--HHCSEEEEEEETTTB-SCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred             HHh--hcCCEEEEEEeCCCC-CCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence            333  489999999887642 34444433 444443     236999999999985

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.71  E-value=1.8e-16  Score=124.57  Aligned_cols=127  Identities=21%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|+|++... .....+..+..........++  ..+.+|||||........   ...+   
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~---   86 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT---SSYY---   86 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH---HHHH---
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH---HHHH---
Confidence            3569999999999999999999998764 233334444444444555666  579999999975433221   1122   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                         ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....+
T Consensus        87 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~  142 (196)
T 3tkl_A           87 ---RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVDYT  142 (196)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH
T ss_pred             ---hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccCHH
Confidence               4899999998886533223445566666665443  3699999999999755554443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=1.1e-16  Score=123.97  Aligned_cols=127  Identities=11%  Similarity=0.067  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++.........++.+..........++.  .+.+|||||..+...       ....+
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~   80 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAY   80 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHH
Confidence            467999999999999999999999877433333344444433333445554  789999999753221       11112


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        81 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~  136 (180)
T 2g6b_A           81 Y--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVKR  136 (180)
T ss_dssp             G--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSCH
T ss_pred             c--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcccccCH
Confidence            2  4789999998886533223345566666665432  369999999999975444443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.71  E-value=3.7e-16  Score=119.17  Aligned_cols=126  Identities=16%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ++++|+++|.+|+|||||+|++++...  .....+++...........+  ..+.+|||||..+.   ...    ...++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~----~~~~~   73 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAI----RDNYF   73 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C---HHH----HHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh---HHH----HHHHh
Confidence            579999999999999999999998763  22222333333333344555  47999999997532   111    12222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus        74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  130 (168)
T 1u8z_A           74 --RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE  130 (168)
T ss_dssp             --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH
T ss_pred             --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH
Confidence              3789999998886543223345566666655432 13699999999998644444433

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.71  E-value=2.8e-16  Score=122.00  Aligned_cols=126  Identities=20%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.++|+++|.+|+|||||+|++++...  .....+++..........++  ..+.+|||||..+.......   .+    
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~----   75 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT---YS----   75 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGG---GT----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHH---HH----
Confidence            579999999999999999999996652  23333333333344445566  46799999998765433321   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        ..+|++++|++++.....+....++..+.+.... ...|+++|+||+|+.+.+..+.+
T Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~  132 (181)
T 3t5g_A           76 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE  132 (181)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH
T ss_pred             --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH
Confidence              4899999998886533223344555555554432 23699999999999655554444

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.70  E-value=1.7e-16  Score=132.19  Aligned_cols=122  Identities=17%  Similarity=0.222  Sum_probs=88.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~  114 (243)
                      +.++|+++|.+|+|||||+|+|+|.. +.++..++.|...........+..+.+|||||+.+.....   .......+.+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            46899999999999999999999998 4677778888877777777788899999999998765211   0111123334


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +....+|++++|++...  . +....+...+.+.     ..|+++|+||+|+.+
T Consensus        81 ~~~~~~d~ii~VvD~~~--~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           81 ILSGDADLLINVVDASN--L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE  126 (274)
T ss_dssp             HHHTCCSEEEEEEEGGG--H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred             HhhcCCCEEEEEecCCC--h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence            44479999999966543  2 3334444444443     369999999999853

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.70  E-value=5.1e-16  Score=118.29  Aligned_cols=124  Identities=17%  Similarity=0.096  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ++++|+++|.+|+|||||+|++++.....  ...+++...........+.  .+.+|||||..+..   ......+    
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~----   72 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---SMRDLYI----   72 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HHHHHHH----
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---HHHHHHh----
Confidence            46899999999999999999999776322  2222222333334445554  58999999975431   1111222    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        ..+|++++|+++......+....++..+.+.... ...|+++|+||+|+.+.+...
T Consensus        73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~  127 (167)
T 1kao_A           73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVS  127 (167)
T ss_dssp             --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSC
T ss_pred             --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCC
Confidence              3789999998886532223344455555554332 237999999999986444443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=1.6e-16  Score=121.76  Aligned_cols=125  Identities=22%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.++|+++|.+|+|||||+|++++.... ....++.. ..........+  ..+.+|||||..+..   ......+    
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~----   72 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI----   72 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcc-ccEEEEEEECCEEEEEEEEECCCchhhH---HHHHHhc----
Confidence            4689999999999999999999987632 11122211 22222223333  478999999985432   2222222    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        ..+|++++|++++.....+....++..+.+..+.....|+++|+||+|+.+.+...
T Consensus        73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~  128 (172)
T 2erx_A           73 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ  128 (172)
T ss_dssp             --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC
T ss_pred             --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC
Confidence              26899999988865332233445566666554322347999999999986444443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.70  E-value=6e-16  Score=120.61  Aligned_cols=119  Identities=19%  Similarity=0.154  Sum_probs=78.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .++++|+++|.+|+|||||+|+|++...  ....++++..........++.  .+.+|||||..+......   ..+   
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~---   73 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD---QYM---   73 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHH---HHH---
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHH---HHH---
Confidence            3579999999999999999999998763  233333344444444455665  477899999865443322   122   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.
T Consensus        74 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           74 ---RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP  122 (189)
T ss_dssp             ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred             ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence               2689999998887543223344556556554332 237999999999986

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.70  E-value=2e-16  Score=121.84  Aligned_cols=128  Identities=15%  Similarity=0.084  Sum_probs=74.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.........+  +.+........++.  .+.+|||||......      ..+... 
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-   73 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQL--GEDVYERTLTVDGEDTTLVVVDTWEAEKLDK------SWSQES-   73 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCS--SSSEEEEEEEETTEEEEEEEECCC-------------CHHHHH-
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCcc--ccceeEEEEEECCEEEEEEEEecCCCCccch------hhhHHh-
Confidence            5799999999999999999999988754333322  22223333445554  788999999854210      111111 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ....+|++++|++++.....+....++..+..... ....|+++|+||+|+.+.+..+.+
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~  132 (175)
T 2nzj_A           74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVE  132 (175)
T ss_dssp             TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHH
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHH
Confidence            12578999999888753322233345555544321 123699999999999755444443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.70  E-value=2.6e-16  Score=139.46  Aligned_cols=120  Identities=20%  Similarity=0.312  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~--~~~~~~~~~~~~~~~~  117 (243)
                      .+|+++|++|+|||||+|.|++...+.+.+.++.|.+.......+.+..+.+|||||+....  .......+....++  
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--
Confidence            37999999999999999999999876677888888887777888999999999999997432  12223333333333  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++|+|++... ..+..+..+.+++++.     .+|+++|+||+|+.
T Consensus        80 ~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~  123 (439)
T 1mky_A           80 READLVLFVVDGKR-GITKEDESLADFLRKS-----TVDTILVANKAENL  123 (439)
T ss_dssp             TTCSEEEEEEETTT-CCCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred             HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence            59999999977653 3556665555555542     36999999999974

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.70  E-value=4.6e-16  Score=118.90  Aligned_cols=122  Identities=15%  Similarity=0.043  Sum_probs=81.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... .....++.+.+........++  ..+.+|||||..+.......   .+    
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~----   75 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA---YY----   75 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH---HH----
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHH---Hh----
Confidence            579999999999999999999998763 222223333333344444454  47999999997654333221   22    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  172 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~  172 (243)
                        ..+|++++|++++.....+....++..+....   ...|+++|+||+|+.+.+..
T Consensus        76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~  127 (168)
T 1z2a_A           76 --RGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCI  127 (168)
T ss_dssp             --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSS
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccccc
Confidence              48999999988865332233445666665544   23699999999998644333

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.70  E-value=2.1e-16  Score=122.00  Aligned_cols=126  Identities=14%  Similarity=0.097  Sum_probs=82.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ++++|+++|.+|+|||||+|++++.... ....++.+.+........++  ..+.+|||||..+.....   ...+    
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~---~~~~----   84 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI---PSYI----   84 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS---HHHH----
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH---HHHh----
Confidence            5699999999999999999999977632 22233333334444445555  479999999975432221   1222    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        .++|++++|++++.....+....++..+....+.  ..|+++|+||+|+.+.+....+
T Consensus        85 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~  140 (179)
T 2y8e_A           85 --RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTE  140 (179)
T ss_dssp             --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSCHH
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCCHH
Confidence              3899999998886533223345566666655433  3689999999998654444433

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.70  E-value=6.5e-16  Score=121.32  Aligned_cols=122  Identities=20%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~---~~~~~~~~  113 (243)
                      ..++|+++|.+|+|||||+|+|++.. .......++.|.......  . +..+.+|||||+.+......   ........
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            57999999999999999999999886 223333333343333222  2 34799999999876654332   22222333


Q ss_pred             HHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       114 ~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ++. ...+|++++|+++.. ..+..+..+++++..     ...|+++|+||+|+.+
T Consensus        99 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~  148 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRH-APSNDDVQMYEFLKY-----YGIPVIVIATKADKIP  148 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSC
T ss_pred             HHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence            332 245699999988754 245555555555554     2369999999999863

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.70  E-value=6.4e-16  Score=120.15  Aligned_cols=126  Identities=15%  Similarity=0.179  Sum_probs=82.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++...  .....+++...........+  ..+.+|||||..+.   ....    ..+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~----~~~   86 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIR----DNY   86 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHH----HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc---HHHH----HHH
Confidence            3679999999999999999999998763  22333333333333344555  37899999998543   1122    222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      +  ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+....
T Consensus        87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~  143 (187)
T 2a9k_A           87 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSV  143 (187)
T ss_dssp             H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCH
T ss_pred             h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCH
Confidence            2  3789999998886543223445566666665432 1369999999999864444443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.69  E-value=5.8e-16  Score=119.73  Aligned_cols=125  Identities=23%  Similarity=0.177  Sum_probs=81.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .+.++|+++|.+|+|||||+|++++...  .....+++..........++  ..+.+|||||..+......   ..+   
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~---   78 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE---QYM---   78 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHH---HHH---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHH---HHH---
Confidence            3679999999999999999999998753  23333333333334445555  4788999999865543322   122   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                         ..+|++++|++++..........++..+...... ...|+++|+||+|+.+.+...
T Consensus        79 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~  133 (181)
T 2fn4_A           79 ---RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVP  133 (181)
T ss_dssp             ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSC
T ss_pred             ---hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccC
Confidence               2689999998886533223334455555433321 236999999999996444443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.69  E-value=2.4e-16  Score=121.80  Aligned_cols=128  Identities=20%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ...++|+++|.+|+|||||+|++++.... ....++.+.+.........+   ..+.+|||||.........   ..+  
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~--   77 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLD---KYI--   77 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHH---HHH--
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhh---HHH--
Confidence            36799999999999999999999987632 22223333334444455555   6899999999865433221   122  


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCCCCCCCCH
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~~~~~~~~  174 (243)
                          .++|++++|++++.....+....++..+..........| +++|+||+|+.+.+..+.
T Consensus        78 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~  135 (178)
T 2hxs_A           78 ----YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP  135 (178)
T ss_dssp             ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH
T ss_pred             ----hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH
Confidence                489999999888653222233456666655433211245 899999999864333333

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.69  E-value=2.5e-16  Score=120.29  Aligned_cols=124  Identities=16%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ++++|+++|.+|+|||||+|++++....  ....++...........+  +..+.+|||||..+...   .....+    
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~----   72 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA---MRDLYM----   72 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT---HHHHHH----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH---HHHHHh----
Confidence            4689999999999999999999987532  222222222222222333  34789999999864432   222222    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+
T Consensus        73 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~  127 (167)
T 1c1y_A           73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVG  127 (167)
T ss_dssp             --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSC
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCC
Confidence              2689999998886533223334566666554332 237999999999996444333

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.69  E-value=8.8e-16  Score=119.37  Aligned_cols=129  Identities=19%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIK  112 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~  112 (243)
                      .....++|+++|.+|+|||||+|++++...  .....+++..........++.  .+.+|||||..+......   ..++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---~~~~   88 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE---QYMR   88 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHH---HHHH
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHH---HHHh
Confidence            345689999999999999999999997753  222223333333444455555  466799999864433322   2232


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                            ++|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+....+
T Consensus        89 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~  144 (183)
T 3kkq_A           89 ------TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD  144 (183)
T ss_dssp             ------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH
T ss_pred             ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH
Confidence                  789999998886543223344566666554332 23699999999999754444443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.69  E-value=1.7e-16  Score=121.65  Aligned_cols=125  Identities=17%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... .....++.+..........++  ..+.+|||||..+....       ...+ 
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~-   75 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------GPIY-   75 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------HHHH-
Confidence            579999999999999999999998763 222233333333333444444  37889999997532211       1111 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                       ...+|++++|++++.....+....++..+....+..  .|+++|+||+|+.+.+..+.
T Consensus        76 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~  131 (170)
T 1z08_A           76 -YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSI  131 (170)
T ss_dssp             -STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCH
T ss_pred             -hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCH
Confidence             258899999988865332233445666666655433  69999999999965444443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.69  E-value=5.4e-16  Score=123.10  Aligned_cols=126  Identities=17%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|+|++.... ....++.+..........++.  .+.+|||||..+.......   .+    
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~----   78 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS---YY----   78 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG---GG----
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH---hc----
Confidence            5699999999999999999999987642 223333343444444455553  7999999998655433221   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....+
T Consensus        79 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~  134 (206)
T 2bcg_Y           79 --RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYD  134 (206)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH
Confidence              4899999998886533223344566666554433  3689999999999754444433

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.69  E-value=1e-15  Score=121.16  Aligned_cols=128  Identities=16%  Similarity=0.173  Sum_probs=83.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++...  .....+++..........++.  .+.+|||||..+..   ...    ..+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~----~~~   82 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AIR----DNY   82 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HHH----HHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---HHH----HHH
Confidence            3679999999999999999999998763  223333333333334445554  79999999985432   111    222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                      +  ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.++
T Consensus        83 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~  141 (206)
T 2bov_A           83 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE  141 (206)
T ss_dssp             H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHHH
T ss_pred             H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHHH
Confidence            2  3789999998887543223345566666655431 236999999999996544444443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.69  E-value=6.5e-16  Score=119.26  Aligned_cols=125  Identities=16%  Similarity=0.108  Sum_probs=80.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++..... ...+..+...........+  ..+.+|||||..+.   .......+    
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~----   85 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF---RAVTRSYY----   85 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT---CHHHHHHH----
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh---hhhHHHHh----
Confidence            56999999999999999999999876422 1122222222233333444  47999999997432   22222233    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~  140 (179)
T 1z0f_A           86 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTY  140 (179)
T ss_dssp             --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH
T ss_pred             --ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCH
Confidence              3889999998886543223344566666655433  368999999999964444433

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.69  E-value=1.2e-16  Score=141.55  Aligned_cols=134  Identities=24%  Similarity=0.265  Sum_probs=86.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.....++..+++|.+.......+++..+.+|||||+.+.....+  +....++...
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            46899999999999999999999988655677777777766666778889999999999865433110  1122222111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  177 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~  177 (243)
                      ....+|++++|+++.. ..+..+..++..+...     ..|+++|+||+|+.+.+....++.
T Consensus       254 ~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~~~~~~~~  309 (436)
T 2hjg_A          254 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEF  309 (436)
T ss_dssp             HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCTTHHHHH
T ss_pred             HHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcchHHHHHH
Confidence            1137899999988764 3455566666555432     369999999999975444333333

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.69  E-value=2.2e-16  Score=120.72  Aligned_cols=124  Identities=14%  Similarity=0.060  Sum_probs=68.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||+|++++.........+..+.   ......++  ..+.+|||||.........       .++ 
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~-   70 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRWLPG-------HCM-   70 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE---EEEEEETTEEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEECCEEEEEEEEECCCCccchhhhh-------hhh-
Confidence            5899999999999999999999876543333222221   12223333  4788999999864322211       112 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                       ..+|++++|++++.....+....++..+..... ....|+++|+||+|+.+.+..+.+
T Consensus        71 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~  127 (166)
T 3q72_A           71 -AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD  127 (166)
T ss_dssp             ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH
T ss_pred             -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH
Confidence             488999999888754322333445555544322 123699999999999755544433

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=6e-16  Score=118.81  Aligned_cols=120  Identities=17%  Similarity=0.284  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.++|+++|.+|+|||||+|++++... .++..++.+.........+.+..+.+|||||+.+...... .......++..
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhc
Confidence            368999999999999999999998763 3444555555544555566788999999999976533221 11111223322


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|+++..  . +....++..+.+     ...|+++|+||+|+.
T Consensus        80 ~~~~~~i~v~D~~~--~-~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           80 EKPDLVVNIVDATA--L-ERNLYLTLQLME-----MGANLLLALNKMDLA  121 (165)
T ss_dssp             HCCSEEEEEEETTC--H-HHHHHHHHHHHH-----TTCCEEEEEECHHHH
T ss_pred             CCCCEEEEEecCCc--h-hHhHHHHHHHHh-----cCCCEEEEEEchHhc
Confidence            47899999977653  1 222334444433     136999999999985

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.69  E-value=1.4e-16  Score=124.17  Aligned_cols=126  Identities=16%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++.... ....+..+..........++  ..+.+|||||..+.       ......+
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~   79 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSY   79 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHH
Confidence            35699999999999999999999987642 22223333233333444555  58999999997421       1112222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+..+.
T Consensus        80 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~  135 (186)
T 2bme_A           80 Y--RGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTF  135 (186)
T ss_dssp             S--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCH
T ss_pred             H--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCH
Confidence            2  5899999998886533223334566666554433  369999999999964444443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=6.9e-16  Score=122.84  Aligned_cols=118  Identities=19%  Similarity=0.202  Sum_probs=81.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... .....++.+.........+.+  ..+.+|||||..+......   ..+    
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~----   90 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITT---AYY----   90 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCH---HHH----
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHH---HHh----
Confidence            569999999999999999999998764 233334444444445555666  5799999999764433222   122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.
T Consensus        91 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~  138 (213)
T 3cph_A           91 --RGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME  138 (213)
T ss_dssp             --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence              4899999998886533223334666666665433  36999999999983

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.69  E-value=4.4e-16  Score=119.21  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++..... ...+..+...........+  ..+.+|||||+.+.....       ..++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~   76 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA-------PMYY   76 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT-------HHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc-------HhhC
Confidence            56999999999999999999999886322 1122222222222333443  579999999985332111       1122


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+.
T Consensus        77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~~  128 (170)
T 1z0j_A           77 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVRE  128 (170)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGCC
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccccc
Confidence              4889999998886533223335566666654322  368999999999964433

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=4.2e-16  Score=119.23  Aligned_cols=120  Identities=13%  Similarity=0.100  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+++|+++|.+|+|||||+|++++.... ....+..+..........++  ..+.+|||||..+..   ..    ...++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~----~~~~~   73 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---SL----APXYY   73 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GG----HHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh---hh----hhhhh
Confidence            4689999999999999999999987632 22223333333333334444  479999999975322   11    12222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.
T Consensus        74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           74 --RNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE  123 (170)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred             --ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence              4899999998886543223344556666655433  3689999999998643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.69  E-value=7.3e-16  Score=119.42  Aligned_cols=126  Identities=13%  Similarity=0.066  Sum_probs=81.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++..... ...++.+...........+  ..+.+|||||..+.....       ..+
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~   81 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMY   81 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT-------HHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh-------HHH
Confidence            357999999999999999999999876432 2222223223333333443  479999999975332111       122


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~  137 (181)
T 2efe_B           82 Y--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTA  137 (181)
T ss_dssp             H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCH
T ss_pred             h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCH
Confidence            2  4899999998886533223445566666654322  368999999999965444443

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=3.9e-16  Score=123.07  Aligned_cols=125  Identities=13%  Similarity=0.139  Sum_probs=80.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.....  ...++...........++  ..+.+|||||..+    .......+    
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~----   96 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM----   96 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh----
Confidence            57999999999999999999999876422  222222222222334444  4799999999965    22222233    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus        97 --~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~  153 (196)
T 2atv_A           97 --RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTE  153 (196)
T ss_dssp             --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHH
T ss_pred             --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHH
Confidence              2789999998886533223344556666654331 23699999999999644444433

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.68  E-value=5e-16  Score=118.89  Aligned_cols=118  Identities=19%  Similarity=0.207  Sum_probs=77.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... .....++.+..........++  ..+.+|||||..+.......   .+    
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~----   73 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA---YY----   73 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHH---HH----
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHH---Hh----
Confidence            468999999999999999999998764 222233333333334444454  47899999997654333221   22    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.
T Consensus        74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~  121 (170)
T 1g16_A           74 --RGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME  121 (170)
T ss_dssp             --TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCT
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCC
Confidence              4899999998886533223345566666665433  36999999999983

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.68  E-value=8.5e-16  Score=120.94  Aligned_cols=123  Identities=14%  Similarity=0.108  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-------------------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-------------------------------   86 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-------------------------------   86 (243)
                      ..++|+++|.+|+|||||+|+|++.... ....++.+...........+                               
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999988632 22222222223222233333                               


Q ss_pred             --------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEE
Q 026113           87 --------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  158 (243)
Q Consensus        87 --------~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i  158 (243)
                              ..+.+|||||..+....   .    ..++  ..+|++++|++++.....+....++..+....+    .|++
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~---~----~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii  151 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASI---V----PLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII  151 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTT---H----HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred             cccCccceeEEEEEECCCcHHHHHH---H----HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence                    68999999997543322   1    2222  489999999887653222333445555555433    6999


Q ss_pred             EEEeCCCCCCCCCCCHH
Q 026113          159 IVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       159 vV~tk~D~~~~~~~~~~  175 (243)
                      +|+||+| ........+
T Consensus       152 lv~NK~D-~~~~~~~~~  167 (208)
T 3clv_A          152 LVANKID-KNKFQVDIL  167 (208)
T ss_dssp             EEEECTT-CC-CCSCHH
T ss_pred             EEEECCC-cccccCCHH
Confidence            9999999 333344433

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.68  E-value=1.1e-15  Score=119.80  Aligned_cols=127  Identities=12%  Similarity=0.118  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .+.++|+++|.+|+|||||+|++++..... ...+..+.+........++  ..+.+|||||..+...      .....+
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~   90 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHY   90 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHH
Confidence            367999999999999999999999776422 2223333333344444555  5899999999732110      112223


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      +  ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+...
T Consensus        91 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~  146 (189)
T 1z06_A           91 Y--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVP  146 (189)
T ss_dssp             H--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSC
T ss_pred             h--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceeC
Confidence            3  5899999998886533223345566666665422 236999999999996444433

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.68  E-value=2.8e-16  Score=129.63  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~~~  116 (243)
                      .+|+++|.+|+|||||+|+|+|... .++..++.|.+.........+..+.+|||||+.+.....   .......+.++.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            4899999999999999999999974 577778888877777778889999999999997665320   111122344554


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ...+|++++|++...  . +....+..++.+     ...|+++|+||+|+.+
T Consensus        81 ~~~~d~vi~VvDas~--~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           81 DLEYDCIINVIDACH--L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAE  124 (256)
T ss_dssp             HSCCSEEEEEEEGGG--H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred             hCCCCEEEEEeeCCC--c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence            578999999966653  1 222223333322     2379999999999853

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.68  E-value=3.8e-16  Score=122.87  Aligned_cols=125  Identities=16%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++.... ....+..+.+........++  ..+.+|||||..+.   ...    ...+
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~----~~~~   95 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---NSI----TSAY   95 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---HHH----HHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---HHH----HHHH
Confidence            35699999999999999999999987642 22223333333344445555  47999999997422   111    2222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+...
T Consensus        96 ~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~~v~  150 (192)
T 2il1_A           96 Y--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREIT  150 (192)
T ss_dssp             H--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC
T ss_pred             h--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC
Confidence            2  3789999998886533223334566666554332  36999999999986444433

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=4.8e-16  Score=121.98  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc--cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++......  ...+..       ...+.+..+.+|||||+.+......   ..++..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~~~~  115 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-------AADYDGSGVTLVDFPGHVKLRYKLS---DYLKTR  115 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHH---HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-------eeeecCCeEEEEECCCCchHHHHHH---HHHHhh
Confidence            4678999999999999999999998763211  111111       1123567899999999976543322   233322


Q ss_pred             HhcCCCcEEEEEEeCC-CcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHH
Q 026113          115 LLNKTIDVLLYVDRLD-VYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV  189 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d-~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i  189 (243)
                      .  ..+|++++|+++. ..........++..+.....  .....|+++|+||+|+..  ....++..+...+.+..+.
T Consensus       116 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~l~~~l~~l~  189 (193)
T 2ged_A          116 A--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT--ARPPSKIKDALESEIQKVI  189 (193)
T ss_dssp             G--GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT--CCCHHHHHHHHHHHHHHHH
T ss_pred             c--ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC--CCCHHHHHHHHHHHHHHHh
Confidence            2  3689999998876 22111122233333332221  112379999999999963  3345555544444555543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.68  E-value=6e-16  Score=121.47  Aligned_cols=126  Identities=14%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+|++++...... ..++.+..........++  ..+.+|||||..+.......   .+   
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~---   91 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS---YY---   91 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH---HH---
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHH---Hh---
Confidence            3569999999999999999999998764222 222333333334444555  48999999998654433221   22   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                         .++|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        92 ---~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~  146 (191)
T 2a5j_A           92 ---RGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESRRDVKR  146 (191)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH
T ss_pred             ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCccccCH
Confidence               4899999998886533223334566666554332  369999999999964444433

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.68  E-value=2.4e-15  Score=117.69  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--H-HHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--H-AIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~-~~~~~~~~  114 (243)
                      ..++|+++|.+|+|||||+|++++.........+..+......   ..+..+.+|||||+........  + .......+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   98 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY   98 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence            5689999999999999999999998754444444444433222   2245788999999865443321  1 22222333


Q ss_pred             H-hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 L-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~-~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      + ....+|++++|++... .....+...++++...     ..|+++|+||+|+.
T Consensus        99 ~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~  146 (195)
T 3pqc_A           99 FKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKV  146 (195)
T ss_dssp             HHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             HhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence            3 2357799999977653 3455555666666553     36999999999986

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=125.25  Aligned_cols=126  Identities=16%  Similarity=0.213  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.+||+++|.+|+|||||+|++++....  ....+++.........  ..+..+.+|||||..+.......   .+    
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~----   93 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS---FI----   93 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG---GT----
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH---HH----
Confidence            6799999999999999999999987743  2222222222222222  24567899999998765443321   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus        94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~  150 (201)
T 3oes_A           94 --IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAV  150 (201)
T ss_dssp             --TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHH
T ss_pred             --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHH
Confidence              4899999998887533223334455444443222 23699999999998755444443

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=2.2e-16  Score=124.17  Aligned_cols=126  Identities=16%  Similarity=0.096  Sum_probs=79.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++..... ...+..+.........  ..+..+.+|||||..+.....       ..+
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~   92 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA-------PMY   92 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT-------HHH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh-------HHh
Confidence            357999999999999999999999876321 1112222222222222  244589999999975432211       122


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        93 ~--~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~v~~  148 (192)
T 2fg5_A           93 Y--RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDIREVPL  148 (192)
T ss_dssp             H--TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCH
T ss_pred             h--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCH
Confidence            2  4899999998886533223345566666554322  369999999999964344333

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.67  E-value=6.4e-16  Score=118.17  Aligned_cols=125  Identities=14%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+++|+++|.+|+|||||+|++++...... ..+..+...........  +..+.+|||||..+..   ...    ..++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~----~~~~   76 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF-QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---SLA----PMYY   76 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGH----HHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh---hhh----HHhc
Confidence            579999999999999999999997663221 11222222222223333  4589999999975322   111    2222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+..+.
T Consensus        77 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~~  131 (170)
T 1r2q_A           77 --RGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDF  131 (170)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCH
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccCH
Confidence              4899999998886533223334555555554333  368999999999864444333

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.67  E-value=6.1e-16  Score=122.72  Aligned_cols=127  Identities=13%  Similarity=0.099  Sum_probs=79.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++.... ....++.+.........+++  ..+.+|||||..+.   .    .....+
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~----~~~~~~   98 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---R----TITQSY   98 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG---H----HHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH---H----HHHHHH
Confidence            35699999999999999999999977632 22222222333334445555  48999999998422   1    122223


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+..+.+
T Consensus        99 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~  155 (201)
T 2hup_A           99 Y--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVSLA  155 (201)
T ss_dssp             H--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH
T ss_pred             H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccCHH
Confidence            3  5899999998886532223344566666655432  3699999999999644444433

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.67  E-value=1.2e-15  Score=126.09  Aligned_cols=121  Identities=20%  Similarity=0.303  Sum_probs=86.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.++|+++|.+|+|||||+|+|+|... .++..++.|...........+..+.+|||||+.+......+ ....+.++..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhh
Confidence            568999999999999999999999875 46667777777666667777899999999999866543311 1122334434


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..+|++++|++.+.  + +....+...+.+   .  ..|+++|+||+|+..
T Consensus        82 ~~~d~ii~V~D~t~--~-~~~~~~~~~l~~---~--~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           82 GDADLVILVADSVN--P-EQSLYLLLEILE---M--EKKVILAMTAIDEAK  124 (258)
T ss_dssp             SCCSEEEEEEETTS--C-HHHHHHHHHHHT---T--TCCEEEEEECHHHHH
T ss_pred             cCCCEEEEEeCCCc--h-hhHHHHHHHHHh---c--CCCEEEEEECcCCCC
Confidence            68999999977653  2 222233333332   2  369999999999853

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.67  E-value=8.1e-16  Score=120.78  Aligned_cols=126  Identities=15%  Similarity=0.109  Sum_probs=79.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ....++|+++|.+|+|||||+|+|++...... ..++.+..........  .+..+.+|||||+.+.....   ...+  
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~--   95 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT---SAYY--   95 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH---HHHH--
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh---HHHh--
Confidence            34579999999999999999999998764322 2222222222222333  34578999999996543222   1122  


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                          ..+|++++|++++..........++..+.....  ...|+++|+||+|+...+...
T Consensus        96 ----~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~  149 (193)
T 2oil_A           96 ----RGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVP  149 (193)
T ss_dssp             ----TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSC
T ss_pred             ----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccC
Confidence                489999999887643222223445555544322  236899999999996443433

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.67  E-value=5e-16  Score=138.27  Aligned_cols=135  Identities=24%  Similarity=0.258  Sum_probs=91.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.....++..+++|.+........++..+.+|||||+.+.....  .+....++...
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  273 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  273 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence            5689999999999999999999998766677777777776666667888999999999986533211  11122222111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  178 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~  178 (243)
                      ....+|++|+|++... .+++.+..++..+.+.     .+|+++|+||+|+.+.+....++..
T Consensus       274 ~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~  330 (456)
T 4dcu_A          274 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEFE  330 (456)
T ss_dssp             HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCSSHHHHHH
T ss_pred             HHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCchHHHHHHH
Confidence            1247899999977754 3667777777666652     3699999999999755554444443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.67  E-value=4.7e-16  Score=123.19  Aligned_cols=127  Identities=17%  Similarity=0.104  Sum_probs=78.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++.... ....++.+..........++  ..+.+|||||..+.....       ..+
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~   94 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT-------RSY   94 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC-------HHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH-------HHH
Confidence            46799999999999999999999987642 22223333333344444555  589999999974322221       112


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+..+.+
T Consensus        95 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~  151 (200)
T 2o52_A           95 Y--RGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPEREVTFL  151 (200)
T ss_dssp             H--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGCCSCHH
T ss_pred             h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccccccCHH
Confidence            2  4899999998886533223344566556554432  3689999999998644444433

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.66  E-value=1.6e-15  Score=118.75  Aligned_cols=124  Identities=14%  Similarity=0.095  Sum_probs=80.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.... ....+..+...........  +..+.+|||||..+......       .++
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~   92 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY   92 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc
Confidence            4699999999999999999999987642 2222222323322333333  35899999999865443321       111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+...
T Consensus        93 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~  146 (189)
T 2gf9_A           93 --RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDERVVP  146 (189)
T ss_dssp             --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccCCC
Confidence              4899999998886533223344566666554322  36999999999996444433

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.66  E-value=2.1e-16  Score=122.95  Aligned_cols=126  Identities=14%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... .....++.+..........++  ..+.+|||||..+.....       ..++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~   78 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYY   78 (183)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHH
Confidence            469999999999999999999997653 222222223333333445566  689999999985432111       1111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        .++|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+..+.+
T Consensus        79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~  134 (183)
T 2fu5_C           79 --RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKE  134 (183)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHH
T ss_pred             --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCCHH
Confidence              5899999998886532223334566666554332  3699999999999654444433

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.66  E-value=2.7e-15  Score=117.58  Aligned_cols=127  Identities=13%  Similarity=0.140  Sum_probs=79.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+|++++...  .....++...........++  ..+.+|||||.......    ...+   
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~---   89 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC----ERYL---   89 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT----HHHH---
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH----HHHH---
Confidence            4679999999999999999999998763  22223333222222333444  47889999998654432    1122   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCCCCCCCHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                         ..+|++++|++++.....+....++..+...... ....|+++|+||+|+...+..+.+
T Consensus        90 ---~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~  148 (187)
T 3c5c_A           90 ---NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA  148 (187)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHH
T ss_pred             ---hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHH
Confidence               4899999999987543223334566666654321 123699999999998644444433

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.66  E-value=2.5e-15  Score=114.12  Aligned_cols=119  Identities=21%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ++++|+++|.+|+|||||+|++++....  ....+++...........+  ..+.+|||||..+..   ......+    
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~~~~~----   72 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---AMRDQYM----   72 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC---HHHHHHH----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh---HHHHHhh----
Confidence            4689999999999999999999987632  2222222233333334444  358899999985432   2222222    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                        ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+
T Consensus        73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence              2789999998876433223335556666554431 1369999999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.66  E-value=6.1e-16  Score=123.88  Aligned_cols=121  Identities=14%  Similarity=0.139  Sum_probs=78.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ...+||+++|.+|+|||||+|+|++...... ..+..+.......... .+  ..+.+|||||..+.......   .+  
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~--   82 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKN-YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV---YY--   82 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCE-EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHH---HH--
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHH---Hh--
Confidence            3579999999999999999999998763211 1122221111222212 22  57999999998655443322   22  


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                          .++|++++|++++.....+....++..+....+.+  .|+++|+||+|+.+.
T Consensus        83 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  132 (218)
T 4djt_A           83 ----IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR  132 (218)
T ss_dssp             ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred             ----hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence                48999999988865433334456777777665543  699999999998643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.66  E-value=3.3e-16  Score=139.71  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-~  116 (243)
                      +.++|+++|.+|+|||||+|+|++.+.+.+...+++|.+........+|.++.+|||||+.++....+..  .++... .
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhh
Confidence            5689999999999999999999998766777778778777767777899999999999996543221110  011111 2


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ...+|++|+|++.+.....+.......++... .   ..|+++|+||+|+.+.
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCc
Confidence            36899999998876432211111222233322 2   2699999999998643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.66  E-value=1.7e-15  Score=115.96  Aligned_cols=127  Identities=15%  Similarity=0.073  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||+|++++........ +..+..........++  ..+.+|||||..+......  ...+     
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~-----   73 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ--DHCL-----   73 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------CHHH-----
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhh--hhhh-----
Confidence            4799999999999999999999765432222 2223333444444555  4688999999965322100  0112     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                       ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus        74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~  130 (169)
T 3q85_A           74 -QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE  130 (169)
T ss_dssp             -HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH
T ss_pred             -ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH
Confidence             2689999998887543223344555555554331 13699999999998644444443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.66  E-value=2.8e-15  Score=117.25  Aligned_cols=121  Identities=19%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      +.++++|+++|.+|+|||||+|++++....  .....++...........+.  .+.+|||||..+...       ....
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~   88 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ   88 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHH
Confidence            346799999999999999999999987632  22223333333334445554  589999999753321       1112


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ++  ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+
T Consensus        89 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           89 YM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             -C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             hh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence            22  5899999998886543223334556566554331 1369999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.66  E-value=5.2e-16  Score=119.93  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=79.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++... .....++.+..........++..+.+|||||+.+......       .  .
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~   75 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--G   75 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--S
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--H
Confidence            4679999999999999999999998764 3333344444444445567888999999999865543321       1  1


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ...+|++++|++++.. ........+   ......  ..|+++|+||+|+.+
T Consensus        76 ~~~~d~~i~v~d~~~~-~~~~~~~~l---~~~~~~--~~p~ilv~nK~Dl~~  121 (178)
T 2lkc_A           76 AQVTDIVILVVAADDG-VMPQTVEAI---NHAKAA--NVPIIVAINKMDKPE  121 (178)
T ss_dssp             CCCCCEEEEEEETTCC-CCHHHHHHH---HHHGGG--SCCEEEEEETTTSSC
T ss_pred             HhhCCEEEEEEECCCC-CcHHHHHHH---HHHHhC--CCCEEEEEECccCCc
Confidence            2589999999887542 233333333   332222  369999999999863

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=1.3e-15  Score=119.97  Aligned_cols=121  Identities=19%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++..... ...+. ...........++  ..+.+|||||..+..   ...    ..+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~----~~~   76 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPT-IEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQ----RLS   76 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCC-CCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHH----HHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCc-cccceeEEEEECCEEEEEEEEeCCChHHhH---HHH----HHh
Confidence            367999999999999999999999876321 11121 1122222223333  478999999975431   111    222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +  ..+|++++|++++.....+....++..+....+.....|+++|+||+|+.+
T Consensus        77 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           77 I--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             H--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            2  378999999888653322333445666666544323469999999999863

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.65  E-value=1.5e-15  Score=117.18  Aligned_cols=120  Identities=21%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... .....++.+..........++  ..+.+|||||....       ......++
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~   77 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY   77 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH
Confidence            579999999999999999999997763 222223333333344445565  48999999997421       11112222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                        ..+|++++|++++.....+....++..+......  ....|+++|+||+|+.
T Consensus        78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           78 --RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence              5899999998887543223345566666655431  1236999999999986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.65  E-value=1.1e-15  Score=119.38  Aligned_cols=125  Identities=17%  Similarity=0.089  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE-EEEeeeC-----------CeEEEEEeCCCCCCCCCCcH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRA-----------GFTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~-~~~~~~~-----------~~~~~viDTPG~~~~~~~~~  105 (243)
                      ..++|+++|.+|+|||||+|++++.... ....++.+.... .......           ...+.+|||||+...     
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----   83 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-----   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence            5699999999999999999999987632 222222222222 2222333           348999999998321     


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        ......++  ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+...
T Consensus        84 --~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~  146 (195)
T 3bc1_A           84 --RSLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVK  146 (195)
T ss_dssp             --HHHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSC
T ss_pred             --HHHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccC
Confidence              11222222  5899999998886533223334566666554321 236999999999986443433

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.65  E-value=1.9e-15  Score=117.75  Aligned_cols=118  Identities=18%  Similarity=0.212  Sum_probs=75.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ...++|+++|.+|+|||||+|++++.......+    |..........++..+.+|||||....   .    .....++ 
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~---~----~~~~~~~-   81 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI---R----PYWRSYF-   81 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG---H----HHHHHHH-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHH---H----HHHHHHh-
Confidence            467999999999999999999999886422221    111223345567889999999998421   1    1222233 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++.....+....++..+....+ ....|+++|+||+|+..
T Consensus        82 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~  131 (181)
T 1fzq_A           82 -ENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLT  131 (181)
T ss_dssp             -TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTT
T ss_pred             -CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCccc
Confidence             489999999887643211222233333322111 12369999999999863

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.1e-15  Score=123.03  Aligned_cols=125  Identities=14%  Similarity=0.084  Sum_probs=79.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++..... ...++.+..........++  ..+.+|||||..........   .+    
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~----   83 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSA---YY----   83 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG---GT----
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHH---Hh----
Confidence            56999999999999999999999876422 2223333333344445566  58999999998654433221   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        ..+|++|+|++++.....+....++..+......  ..|+++|+||+|+.+.+..+.
T Consensus        84 --~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~  138 (223)
T 3cpj_B           84 --RGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHLRAVPT  138 (223)
T ss_dssp             --TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCH
T ss_pred             --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccccCH
Confidence              4899999998876533223344566666554332  369999999999964444443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.65  E-value=3.5e-15  Score=116.31  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=76.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++..  .....+  |..........++..+.+|||||+.+.       ......+  
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~--   82 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNY--   82 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC--CSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGG--
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc--cCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHH--
Confidence            367999999999999999999999877  222222  223334455567889999999998321       1111112  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..++|++++|++++.....+....++..+..... ....|+++|+||+|+.+
T Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  133 (186)
T 1ksh_A           83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG  133 (186)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence            2589999999888643222222333333333211 12369999999999963

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.65  E-value=3.8e-15  Score=115.22  Aligned_cols=114  Identities=16%  Similarity=0.136  Sum_probs=76.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .+.+||+++|.+|+|||||+|.+++.....  ..++ ...........++  ..+.+|||||...        ...++  
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~--   71 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKT-ESEQYKKEMLVDGQTHLVLIREEAGAPD--------AKFSG--   71 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSC-SSSEEEEEEEETTEEEEEEEEECSSSCC--------HHHHH--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCC-cceeEEEEEEECCEEEEEEEEECCCCch--------hHHHH--
Confidence            357999999999999999999999876432  2222 2222233344555  4688999999853        12333  


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~  167 (243)
                          ++|++++|++++.....+....+++++...... ....|+++|+||+|+.
T Consensus        72 ----~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           72 ----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             ----hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence                789999998886543223344555556554331 1236999999999984

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=3.1e-15  Score=116.89  Aligned_cols=117  Identities=8%  Similarity=0.005  Sum_probs=74.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++......  .++  .........+++..+.+|||||+.+......       .++ 
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~-   81 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT--SPT--IGSNVEEIVINNTRFLMWDIGGQESLRSSWN-------TYY-   81 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE--ECC--SCSSCEEEEETTEEEEEEECCC----CGGGH-------HHH-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcC--cCC--CccceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence            4689999999999999999999997764322  222  1122334456789999999999965432221       222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++.....+....++..+.+... ....|+++|+||+|+.
T Consensus        82 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           82 -TNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK  130 (187)
T ss_dssp             -TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred             -cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence             489999999888643212223334444433211 1237999999999986

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.65  E-value=2.1e-15  Score=119.32  Aligned_cols=125  Identities=15%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.... ....+..+...........  +..+.+|||||+.+.       ......++
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~   78 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY   78 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh
Confidence            4689999999999999999999988742 2222222222222333334  358999999998421       11122222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        79 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~  133 (203)
T 1zbd_A           79 --RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSS  133 (203)
T ss_dssp             --GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSCCSCH
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcccccCH
Confidence              4899999998886532223334555555554322  369999999999965444443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.65  E-value=4.3e-15  Score=117.35  Aligned_cols=129  Identities=15%  Similarity=0.056  Sum_probs=81.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++..... ...+..+.........+++.  .+.+|||||..+.   .....   ..+
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~~~~~---~~~   93 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---GGWLR---DHC   93 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---GHHHH---HHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---hhhhH---HHh
Confidence            357999999999999999999998654322 22333344444444455654  6788999998532   11111   112


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      +  ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus        94 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~  151 (195)
T 3cbq_A           94 L--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE  151 (195)
T ss_dssp             H--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHH
T ss_pred             h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHH
Confidence            2  3789999998886533223344566555554321 23699999999999754444444

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=120.07  Aligned_cols=119  Identities=18%  Similarity=0.120  Sum_probs=73.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++..... ...+..+..........++  ..+.+|||||..+.   .......+   
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~---   98 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF---RSIAKSYF---   98 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTC---HHHHHHHH---
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch---hhhHHHHH---
Confidence            357999999999999999999999876321 1112222222223334444  47999999998532   22222222   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.
T Consensus        99 ---~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~  146 (199)
T 2p5s_A           99 ---RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR  146 (199)
T ss_dssp             ---HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             ---hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence               3789999998886533223344566666654332  36999999999985

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.65  E-value=4.3e-15  Score=116.34  Aligned_cols=118  Identities=14%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++.... ....+  |...........+..+.+|||||..+       .......++ 
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~-   88 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP--TVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC-   88 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC--CCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC--CCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHH-
Confidence            46799999999999999999999977642 11222  22223334556788999999999742       111222233 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++..........++..+..... ....|+++|+||+|+.
T Consensus        89 -~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  137 (188)
T 1zd9_A           89 -RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP  137 (188)
T ss_dssp             -TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence             589999999887643211222333333332211 1237999999999986

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.65  E-value=6.1e-15  Score=117.69  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHH-HHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQ-LIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~-~~~~  113 (243)
                      +.++|+++|.+|+|||||+|++++...  ....++.+....  ...++   +..+.+|||||+.+       ... ....
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~   74 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHES-------LRFQLLDR   74 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHH-------HHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeE--EEEecCCCccEEEEEECCCChh-------HHHHHHHH
Confidence            579999999999999999999998763  233333333222  24444   57899999999841       222 2222


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc----ccccccEEEEEeCCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivV~tk~D~~~  168 (243)
                      ++  .++|++++|+++..  +........+++...+.    .....|+++|+||+|+..
T Consensus        75 ~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           75 FK--SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             HG--GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             HH--hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence            32  58999999987754  22222233333333221    122469999999999963

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.64  E-value=3.1e-15  Score=118.02  Aligned_cols=125  Identities=14%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ..+.+||+++|.+|+|||||+|.+++............+......... .....+.+|||||..+...........++  
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~--   94 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR--   94 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH--
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc--
Confidence            346799999999999999999999986432211111111111121111 33468999999998764333200012333  


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                          ++|++++|++++.. +.+....+..++.+........|+++|+||+|+.
T Consensus        95 ----~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~  142 (196)
T 3llu_A           95 ----GTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL  142 (196)
T ss_dssp             ----TCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             ----cCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence                89999999888753 3344455555665543222247999999999986

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.64  E-value=1.2e-15  Score=129.12  Aligned_cols=125  Identities=17%  Similarity=0.091  Sum_probs=81.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHH-HHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~-~~~~~~  115 (243)
                      ..+||+++|.+|+|||||+|.+++.....+...+..|.........+ ++..+.+|||||..+.   .+.... ....++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence            46899999999999999999999885444544555565555444444 5679999999998422   001101 111222


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++.....+....+..++..........|+++|+||+|+.
T Consensus        79 --~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           79 --QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             --TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             --ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence              58999999988865322233334444554443222237999999999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.64  E-value=3.4e-15  Score=116.50  Aligned_cols=120  Identities=17%  Similarity=0.286  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ++++|+++|.+|+|||||+|+|++... .....++.+...........+..+.+|||||+.+....... ......++..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID-EIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH-HHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH-HHHHHHHHhc
Confidence            578999999999999999999998763 45555666666666666778899999999999765432211 1112223322


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++++|++...  + +....++..+..     ...|+++|+||+|+.
T Consensus        84 ~~~~~~i~v~d~~~--~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~  125 (188)
T 2wjg_A           84 EKPDLVVNIVDATA--L-ERNLYLTLQLME-----MGANLLLALNKMDLA  125 (188)
T ss_dssp             HCCSEEEEEEEGGG--H-HHHHHHHHHHHT-----TTCCEEEEEECHHHH
T ss_pred             cCCCEEEEEecchh--H-HHHHHHHHHHHh-----cCCCEEEEEEhhhcc
Confidence            36899999966542  2 223334433332     236999999999985

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.64  E-value=3.9e-15  Score=123.64  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ..++|+++|.+|+|||||+|+|+|... .++..++.|.........+.+..+.+|||||+.+......+ ....+.++..
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID-ELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH-HHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH-HHHHHHhhhc
Confidence            358999999999999999999999875 66677777877777777888999999999999865443322 1123445555


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++++|++...  . ..   .+.++.+..... ..|+++|+||+|+.
T Consensus        80 ~~~d~vi~v~D~~~--~-~~---~~~~~~~~~~~~-~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           80 GNADVIVDIVDSTC--L-MR---NLFLTLELFEME-VKNIILVLNKFDLL  122 (271)
T ss_dssp             TCCSEEEEEEEGGG--H-HH---HHHHHHHHHHTT-CCSEEEEEECHHHH
T ss_pred             cCCcEEEEEecCCc--c-hh---hHHHHHHHHhcC-CCCEEEEEEChhcC
Confidence            78999999966543  2 22   222333332222 16999999999974

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.64  E-value=2.9e-15  Score=114.17  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +||+++|.+|+|||||+|++++....  ...|  |...........+..+.+|||||..+.       ......++  .+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~   67 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN   67 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHT--TT
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHh--cc
Confidence            58999999999999999999976632  2223  222333445567789999999998431       11222222  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus        68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  114 (164)
T 1r8s_A           68 TQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP  114 (164)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCc
Confidence            9999999888643211222233333332211 1236999999999995

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=118.55  Aligned_cols=120  Identities=11%  Similarity=0.106  Sum_probs=77.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++...+.....  .|.........+++..+.+|||||..+.....       ..++ 
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~-   88 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY-   88 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH-
Confidence            3679999999999999999999998863332222  23334445556778899999999986443221       1122 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++.....+....++..+...... ....|+++|+||+|+.
T Consensus        89 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  139 (190)
T 2h57_A           89 -KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR  139 (190)
T ss_dssp             -GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred             -hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence             4889999998876432112223344444433211 0247999999999996

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.64  E-value=5.2e-15  Score=116.44  Aligned_cols=117  Identities=10%  Similarity=0.043  Sum_probs=73.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++....  ...+  |...........+..+.+|||||..+.....   ...+     
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~-----   94 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLW---RHYF-----   94 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CTTH---HHHH-----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc--ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHH---HHHh-----
Confidence            36799999999999999999999987642  2222  2223334456678899999999996543221   1223     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus        95 -~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~  143 (192)
T 2b6h_A           95 -QNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMP  143 (192)
T ss_dssp             -HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence             389999999888643211222333333332211 1236999999999985

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.64  E-value=1.1e-15  Score=121.51  Aligned_cols=126  Identities=15%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|++++... .....++.+.+.......+++  ..+.+|||||....       ......+
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~   95 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSY   95 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHH
Confidence            3569999999999999999999998763 222233333333344455565  47999999997321       1112222


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                      +  ..+|++++|++++.....+....++..+......  ..|+++|+||+|+...+....
T Consensus        96 ~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~  151 (201)
T 2ew1_A           96 Y--RSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQ  151 (201)
T ss_dssp             S--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCH
T ss_pred             H--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCH
Confidence            2  5899999998876432222335566666654432  368999999999864444433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.64  E-value=2.1e-15  Score=118.69  Aligned_cols=122  Identities=11%  Similarity=0.064  Sum_probs=77.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .....+|+++|.+|+|||||+|++++.....+...+  |...........+..+.+|||||+.+.....       ..++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~   84 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW-------ETYY   84 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------HHHH
Confidence            346799999999999999999999998753322222  2223344456778899999999985432211       1122


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc------ccccEEEEEeCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ------IWKRALIVLTHAQLSL  168 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~------~~~~~ivV~tk~D~~~  168 (243)
                        .++|++|+|++++..........++..+.......      ...|+++|+||+|+..
T Consensus        85 --~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  141 (199)
T 4bas_A           85 --DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG  141 (199)
T ss_dssp             --TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred             --hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence              58999999988865322222333444433321110      1479999999999963

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.64  E-value=1.6e-15  Score=116.26  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=76.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.++|+++|.+|+|||||+|++++....  ...+  |.........+.+..+.+|||||..+....       ...++ 
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~-   72 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY-   72 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh-
Confidence            36799999999999999999999977632  2222  223334455667889999999998532211       11122 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++..........++..+..... ....|+++|+||+|+.+
T Consensus        73 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  122 (171)
T 1upt_A           73 -SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQ  122 (171)
T ss_dssp             -TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence             589999999887643211222233333322211 12379999999999863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=3.3e-15  Score=117.07  Aligned_cols=119  Identities=18%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.++|+++|.+|+|||||+|++++.... ....+..+...........+  ..+.+|||||..+.....   ...+    
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~----   85 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT---PSYY----   85 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH---HHHH----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh---HHHh----
Confidence            5699999999999999999999987632 22222223233233333443  579999999985443222   1122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+|++++|++++..........++..+...... ...|+++|+||+|+.
T Consensus        86 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           86 --RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKE  134 (195)
T ss_dssp             --TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSS
T ss_pred             --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEEECCcCc
Confidence              4899999998886532222333455444443221 236899999999984

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.63  E-value=3e-15  Score=117.68  Aligned_cols=117  Identities=9%  Similarity=0.073  Sum_probs=76.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++++|+++|.+|+|||||+|++++......    ..|.........+++..+.+|||||+.+......       .++ 
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~-   88 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF-   88 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH-
Confidence            3578999999999999999999998764221    1233334455667889999999999865432211       111 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus        89 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  137 (190)
T 1m2o_B           89 -PEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAP  137 (190)
T ss_dssp             -TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             -hcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence             489999999888653222223344444433211 1237999999999986

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.63  E-value=2.3e-15  Score=118.36  Aligned_cols=118  Identities=18%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+|++++...  .....++...........++.  .+.+|||||..+......       .+
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~   91 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP-------LS   91 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-------hh
Confidence            4679999999999999999999998763  222222222222333445554  569999999754332211       11


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                        ..++|++++|++++... +......++..+.....   ..|+++|+||+|+.+
T Consensus        92 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           92 --YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK  141 (194)
T ss_dssp             --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred             --ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence              15899999998886532 22223456666665432   269999999999864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.63  E-value=9.6e-16  Score=136.85  Aligned_cols=116  Identities=26%  Similarity=0.378  Sum_probs=86.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCc-----HHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVN-----YHAIQLI  111 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~-~~~~~~-----~~~~~~~  111 (243)
                      ..++|+++|.+|+|||||+|+|++.+...+.+.+++|.+........++.++.+|||||+. ++....     ......+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            3589999999999999999999998766678888888887777777889999999999997 543221     1122333


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                            ..+|++|+|+++... .+..+..+++.+    .   .+|+++|+||+|+.
T Consensus       322 ------~~aD~vl~VvD~s~~-~s~~~~~il~~l----~---~~piivV~NK~DL~  363 (482)
T 1xzp_A          322 ------EKADIVLFVLDASSP-LDEEDRKILERI----K---NKRYLVVINKVDVV  363 (482)
T ss_dssp             ------HHCSEEEEEEETTSC-CCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred             ------hcccEEEEEecCCCC-CCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence                  379999999887542 333444444332    2   36999999999995

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.63  E-value=7.7e-16  Score=135.31  Aligned_cols=123  Identities=21%  Similarity=0.290  Sum_probs=83.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ..++|+++|.+|+|||||+|+|++.....+...+++|.........+.+. ++.+|||||+.+.........+....++ 
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l-  111 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF-  111 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH-
Confidence            56899999999999999999999988655666666777666666666665 8999999999876654322222233333 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                       ..+|++|+|+++   ...+.+..++..+.+.     ..|+++|+||+|+...+
T Consensus       112 -~~aD~vllVvD~---~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          112 -YRADCGILVTDS---APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             -TSCSEEEEECSS---SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred             -hcCCEEEEEEeC---CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence             489999999554   4556677777777765     36999999999996443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=4.7e-15  Score=116.47  Aligned_cols=117  Identities=19%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++...  .....+++..........++  ..+.+|||||..+......       .+ 
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~-   86 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS-   86 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh-
Confidence            568999999999999999999998753  22222333233333444555  5789999999865543221       11 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       ..++|++++|++++... +......++..+....+   ..|+++|+||+|+.+
T Consensus        87 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  136 (194)
T 2atx_A           87 -YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD  136 (194)
T ss_dssp             -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred             -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence             15899999998886532 22222356666666533   369999999999863

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.63  E-value=4.2e-15  Score=117.73  Aligned_cols=120  Identities=16%  Similarity=0.110  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++.... ....+..+.+........++  ..+.+|||||..+......       .++
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~   78 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFY   78 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHH
Confidence            5799999999999999999999987642 22223333333333444444  5799999999754332221       111


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++.....+....++..+......  ....|+++|+||+|+.
T Consensus        79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           79 --RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             --hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence              4899999998886533223334566666555431  1236999999999996

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.63  E-value=1.8e-15  Score=117.07  Aligned_cols=121  Identities=17%  Similarity=0.096  Sum_probs=74.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ...++|+++|.+|+|||||+|++++.... ....+..+.+........+   ...+.+|||||..+...       ....
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~   77 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVA   77 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------C
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-------hhHH
Confidence            35799999999999999999999987632 2222333333334444444   35899999999743211       1111


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~  167 (243)
                      ++  ..+|++++|++++.....+....++..+.....  .....|+++|+||+|+.
T Consensus        78 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  131 (182)
T 1ky3_A           78 FY--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  131 (182)
T ss_dssp             CS--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             Hh--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence            11  589999999888654322334556666655543  11236999999999985

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.63  E-value=3.3e-15  Score=118.03  Aligned_cols=118  Identities=19%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|.+++...  .....+++..........++.  .+.+|||||..+......       .+
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~   88 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP-------LC   88 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG-------GG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH-------hh
Confidence            4679999999999999999999998762  233333343334444555664  677999999976543322       11


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +  .++|++++|++++... +......|+..+.....   ..|+++|+||+|+.+
T Consensus        89 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           89 Y--TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE  138 (201)
T ss_dssp             G--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred             c--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence            1  5899999998886532 22222246666665543   379999999999863

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=120.52  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .++++|+++|.+|+|||||+|++++....  ....+++..........++.  .+.+|||||..+.....       ..+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~  102 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR-------PLF  102 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHH-------HHH
Confidence            46799999999999999999999987632  22222222333333445554  78999999985432211       112


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +  .++|++++|++++... +......++..+.....   ..|+++|+||+|+.+
T Consensus       103 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  152 (214)
T 2j1l_A          103 Y--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK  152 (214)
T ss_dssp             ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred             h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence            2  4899999998886432 22222245666655432   369999999999863

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.63  E-value=7.7e-16  Score=137.06  Aligned_cols=122  Identities=18%  Similarity=0.258  Sum_probs=77.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~  116 (243)
                      ...+|+++|++|+|||||+|+|+|...+.+.+.++.|.+.......+.+..+.+|||||+...... .++..+....++ 
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~-  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH-
Confidence            457999999999999999999999887667777888887777778888999999999998743322 222333333333 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++|+|++... .++..+..+.+.+++     ..+|+++|+||+|+.
T Consensus       101 -~~ad~il~VvD~~~-~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~  144 (456)
T 4dcu_A          101 -DEADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNT  144 (456)
T ss_dssp             -HHCSEEEEEEESSS-CSCHHHHHHHHHHTT-----CCSCEEEEEECC---
T ss_pred             -hhCCEEEEEEeCCC-CCChHHHHHHHHHHH-----cCCCEEEEEECccch
Confidence             47999999977543 366667666655543     247999999999985

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.63  E-value=9.3e-16  Score=121.45  Aligned_cols=122  Identities=15%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeC----CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA----GFTLNIVDTPGLIEGGYVNYHAIQLIK  112 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t-~~~~~~~~~~~----~~~~~viDTPG~~~~~~~~~~~~~~~~  112 (243)
                      ..++|+++|.+|+|||||+|++++..........+++ .+.......++    ...+.+|||||+.       .......
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~   91 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQIS   91 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHH
Confidence            4689999999999999999999988322222222222 12333344455    3589999999983       1111112


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL  168 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~  168 (243)
                      .+  ..++|++++|++++.....+....++..+....+. ....|+++|+||+|+.+
T Consensus        92 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           92 QY--WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             TT--CCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             HH--HhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            12  25899999998886533223344666666655430 02369999999999964

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.62  E-value=1.9e-15  Score=117.65  Aligned_cols=118  Identities=8%  Similarity=0.025  Sum_probs=74.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+.++|+++|.+|+|||||+|++++...........    .......+++..+.+|||||+.+.....       ..++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~   86 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSW-------NTYY   86 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETTEEEEEEEESSSGGGTCGG-------GGGG
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECCEEEEEEECCCCHhHHHHH-------HHHh
Confidence            3467999999999999999999999887522222111    1123445678999999999985433221       1122


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus        87 --~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           87 --TNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK  135 (181)
T ss_dssp             --TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence              589999999887643211222333333332211 1236999999999985

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.62  E-value=2.8e-15  Score=118.65  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=72.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++++|+++|.+|+|||||+|++.+.......  +  |.........+++..+.+|||||+........       .++ 
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~-   90 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--P--TLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL-   90 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--------C--CCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC--C--CCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH-
Confidence            46789999999999999999999987642211  1  22222345567789999999999865433211       122 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|+++......+....++..+.+... ....|+++|+||+|+.
T Consensus        91 -~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  139 (198)
T 1f6b_A           91 -PAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRP  139 (198)
T ss_dssp             -GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred             -hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence             488999999887643212223334444433211 1237999999999985

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.62  E-value=4.2e-15  Score=123.58  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=81.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      .++|+++|.+|+|||||+|+|+|... .++..++.|.......... +..+.+|||||+.+......+ ....+.++...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhcC
Confidence            58999999999999999999999863 5666777776655555544 778999999999765432211 11223444445


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+|++++|++...  . +....+...+.+     ...|+++|+||+|+.
T Consensus        80 ~~d~vi~V~D~t~--~-e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           80 RADSILNVVDATN--L-ERNLYLTTQLIE-----TGIPVTIALNMIDVL  120 (272)
T ss_dssp             CCSEEEEEEEGGG--H-HHHHHHHHHHHH-----TCSCEEEEEECHHHH
T ss_pred             CCCEEEEEecCCc--h-HhHHHHHHHHHh-----cCCCEEEEEEChhhC
Confidence            7999999966643  2 222233333333     236999999999985

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=1.6e-15  Score=119.06  Aligned_cols=125  Identities=14%  Similarity=0.121  Sum_probs=79.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE--EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM--VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||+|++++..... ...+..+.....  ......+..+.+|||||....       ......++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~   93 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAYY   93 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCC-CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCc-ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHH
Confidence            46899999999999999999999765321 111111222222  222334568999999996311       11222233


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        .++|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+....
T Consensus        94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~  148 (191)
T 3dz8_A           94 --RGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVVPT  148 (191)
T ss_dssp             --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH
T ss_pred             --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCH
Confidence              5899999998886533223445567667664433  369999999999864444443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.62  E-value=1.2e-14  Score=125.37  Aligned_cols=125  Identities=17%  Similarity=0.242  Sum_probs=86.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHH-HHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAI-QLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~-~~~-~~~~~~  114 (243)
                      ...++|+++|.+|+|||||+|.|++... .+...+..|...........+..+.+|||||+.+...... ... ..+.. 
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA-  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH-
Confidence            4678999999999999999999999873 4555556666655555566788999999999976432211 111 11111 


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cC-hhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ....+|++|+|++++... +. +....++..+...++   ..|+++|+||+|+.
T Consensus       243 -~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~  293 (357)
T 2e87_A          243 -LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA  293 (357)
T ss_dssp             -GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred             -HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence             124689999997765432 12 334567777776654   37999999999985

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.62  E-value=8.8e-16  Score=135.93  Aligned_cols=121  Identities=18%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~  118 (243)
                      .+|+++|++|+|||||+|+|+|...+.+.+.++.|.+.......+.+..+.+|||||+...... .+........++  .
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--D   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--H
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence            6899999999999999999999887667777888877777778888999999999999633211 112222222233  4


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ++|++|+|++... ..+..+..+.+.+++     ..+|+++|+||+|+.+
T Consensus        82 ~ad~il~vvD~~~-~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           82 EADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HCSEEEEEEETTT-CSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred             hCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence            8999999977653 345555544444432     2379999999999853

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=1.3e-14  Score=116.29  Aligned_cols=129  Identities=14%  Similarity=0.069  Sum_probs=79.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||+|.+++.........++.+.+.......+++.  .+.+|||+|...      . .+.+... 
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~~-  107 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHDH-  107 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHHC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHHH-
Confidence            56999999999999999999999865433333333444433444556665  567899999742      1 1222221 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ....+|++++|++++.....+....+...+.+... ....|+++|+||+|+.+.+....+
T Consensus       108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~  166 (211)
T 2g3y_A          108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVS  166 (211)
T ss_dssp             CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHH
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHH
Confidence            23578999999988753322223344444443221 123699999999999644444443

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.62  E-value=4e-15  Score=116.40  Aligned_cols=118  Identities=16%  Similarity=0.086  Sum_probs=76.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++++|+++|.+|+|||||+|++++.....  ..+  |...........+..+.+|||||+.+.......   .+     
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~-----   87 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC---YF-----   87 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSS---SS-----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHH---Hh-----
Confidence            368999999999999999999998776422  222  222333445567889999999998654433221   11     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                       .++|++++|++++.....+....++..+..... ....|+++|+||+|+.+
T Consensus        88 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  137 (189)
T 2x77_A           88 -SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPD  137 (189)
T ss_dssp             -TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTT
T ss_pred             -hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcC
Confidence             489999999887643211222233333322111 12369999999999863

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.61  E-value=1.4e-15  Score=122.15  Aligned_cols=121  Identities=12%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ....+||+++|.+|+|||||+|+++.... .......+.+...........+..+.+|||||..........   .+   
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~---   85 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG---YY---   85 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH---HH---
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH---HH---
Confidence            34679999999999999999999664431 112222222222222222233468999999997654433322   22   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                         .++|++++|++++..........++..+.....   ..|+++|+||+|+.+
T Consensus        86 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           86 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  133 (221)
T ss_dssp             ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred             ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence               489999999888754322334456666666543   369999999999863

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.61  E-value=1.3e-14  Score=113.42  Aligned_cols=114  Identities=17%  Similarity=0.046  Sum_probs=76.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ..+.+||+++|.+|+|||||+|.+++..... .. .+ |.........+++.  .+.+|||||.....        .++ 
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~-~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~-   84 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQ-EE-SP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FAA-   84 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCC-CC-CT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HHH-
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-CC-CcceEEEEEEECCEEEEEEEEECCCChhhh--------eec-
Confidence            3467999999999999999999999876321 11 12 22333344556664  67789999985321        232 


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                           .+|++++|++++.....+....|+..+..... ....|+++|+||+|+.
T Consensus        85 -----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           85 -----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             -----HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred             -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence                 68999999888753322233445555554422 1236999999999984

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=3.2e-15  Score=118.95  Aligned_cols=116  Identities=15%  Similarity=0.140  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+++|+++|.+|+|||||+|++++..... ...+. +...........+  ..+.+|||||..+.......       + 
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~-   93 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPT-VFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------S-   93 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGG-------G-
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCc-ccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------h-
Confidence            56899999999999999999999876422 11122 2222222344555  47899999998654432211       1 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ...+|++++|++++... +......++..+.....   ..|+++|+||+|+.
T Consensus        94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  142 (207)
T 2fv8_A           94 -YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLR  142 (207)
T ss_dssp             -CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGG
T ss_pred             -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhh
Confidence             14899999998887532 33333556666665432   36999999999986

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.61  E-value=5.7e-15  Score=114.63  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=72.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .++++|+++|.+|+|||||+|++++.......  ++..  .......+.+..+.+|||||+.+......       .++ 
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~-   83 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK--PTIG--FNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY-   83 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC--SSTT--CCEEEEEETTEEEEEEEEC----CCTTGG-------GTT-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccC--CcCc--cceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence            36899999999999999999999977642221  2222  22344556788999999999965433221       111 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus        84 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  132 (183)
T 1moz_A           84 -ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP  132 (183)
T ss_dssp             -TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence             489999999887543211222233333322110 2347999999999985

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.61  E-value=5.9e-16  Score=137.62  Aligned_cols=121  Identities=19%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-~  116 (243)
                      ..++|+++|.+|+|||||+|+|++.+...+...+++|.+........+|.++.+|||||+.++....+..  .+++.. .
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhh
Confidence            4689999999999999999999998765677777777766555667789999999999996543221110  012222 2


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ...+|++|+|++... ..+..+..+++.+..       +|+++|+||+|+.+
T Consensus       301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~  344 (462)
T 3geh_A          301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVE  344 (462)
T ss_dssp             CCSCSEEEEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred             hhcCCEEEEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence            368999999987754 345555555444322       59999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.61  E-value=2.6e-15  Score=116.63  Aligned_cols=116  Identities=17%  Similarity=0.121  Sum_probs=76.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.++|+++|.+|+|||||+|++++....  ....+++...........+.  .+.+|||||+.+......       .+ 
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~-   73 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LS-   73 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------Hh-
Confidence            5799999999999999999999976532  22222222223333444554  577999999854332211       11 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ...+|++++|++++... +......++..+....+   ..|+++|+||+|+.
T Consensus        74 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  122 (186)
T 1mh1_A           74 -YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  122 (186)
T ss_dssp             -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred             -ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence             15899999998886532 22222356666665543   37999999999986

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.61  E-value=6.5e-15  Score=130.46  Aligned_cols=126  Identities=21%  Similarity=0.332  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---------HHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---------YHAI  108 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---------~~~~  108 (243)
                      ..++|+++|++|+|||||+|+|+|.....+++.+++|.++......++|..+.+|||||+.......         ....
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            4589999999999999999999999866677778777776666777889999999999984322111         1112


Q ss_pred             HHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       109 ~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..+      ..+|++++|+++.. ..+..+..+...+.. .    .+++++|+||+|+.+.+....+
T Consensus       259 ~~i------~~ad~vllv~d~~~-~~~~~~~~i~~~l~~-~----~~~~ilv~NK~Dl~~~~~~~~~  313 (439)
T 1mky_A          259 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMER-R----GRASVVVFNKWDLVVHREKRYD  313 (439)
T ss_dssp             HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHH-T----TCEEEEEEECGGGSTTGGGCHH
T ss_pred             HHH------hhCCEEEEEEeCCC-CCCHHHHHHHHHHHH-c----CCCEEEEEECccCCCchhhHHH
Confidence            222      36899999977653 234444444443332 2    3699999999998644333333

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.60  E-value=4.5e-15  Score=117.53  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||+|++++.... ....++.+... ......++  ..+.+|||||..+......       .+ 
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~-   93 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRP-------LS-   93 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHHHH-------Hh-
Confidence            5799999999999999999999987642 22222222222 22334455  4789999999754332221       11 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ...+|++++|++++... +......++..+.....   ..|+++|+||+|+.
T Consensus        94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  142 (201)
T 2gco_A           94 -YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR  142 (201)
T ss_dssp             -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGT
T ss_pred             -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhh
Confidence             15899999998887532 33333456666665432   36999999999986

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.60  E-value=2.3e-16  Score=124.73  Aligned_cols=122  Identities=20%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+|+|++.... ....+..+..........++  ..+.+|||||..+.......   .+   
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~---  103 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS---YY---  103 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH---Hh---
Confidence            35699999999999999999999987642 22222333334444455566  57999999998655433221   12   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                         ..+|++++|++++.....+....++..+......  ..|+++|+||+|+.+.+
T Consensus       104 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~  154 (199)
T 3l0i_B          104 ---RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKK  154 (199)
T ss_dssp             ---CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--C
T ss_pred             ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCccc
Confidence               4899999997775432222334455555443322  36999999999986443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.59  E-value=2e-15  Score=120.02  Aligned_cols=117  Identities=18%  Similarity=0.138  Sum_probs=75.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .+.+||+++|.+|+|||||++++++...  .....+++..........++.  .+.+|||||+.+......       .+
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~   98 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------LS   98 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-------HH
Confidence            4679999999999999999999997653  222233333333333445554  566999999854332221       11


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..++|++++|++++... +......++..+.....   ..|+++|+||+|+.
T Consensus        99 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  147 (204)
T 4gzl_A           99 --YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  147 (204)
T ss_dssp             --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHH
T ss_pred             --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhc
Confidence              15899999998886533 22222356666665532   37999999999986

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.59  E-value=4.4e-15  Score=118.96  Aligned_cols=118  Identities=15%  Similarity=0.099  Sum_probs=76.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+|.+++....  ....++............  ...+.+|||||.........       .+
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~   95 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------LC   95 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------HH
Confidence            36799999999999999999999987632  222222222222222333  35799999999854332221       11


Q ss_pred             HhcCCCcEEEEEEeCCCcccChh-HHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNL-DKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +  .++|++++|++++.....+. ...|+..+.....   ..|+++|+||+|+.+
T Consensus        96 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           96 Y--SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT  145 (214)
T ss_dssp             C--TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred             c--CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            1  58999999988865332222 4566777766542   369999999999863

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.59  E-value=3.5e-15  Score=119.31  Aligned_cols=124  Identities=15%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCc
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVN  104 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~viDTPG~~~~~~~~  104 (243)
                      ...++|+++|.+|+|||||+|+|++.... ....++.+.........+.            ...+.+|||||..      
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------   95 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------   95 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence            35699999999999999999999987631 1111111111111222222            4579999999962      


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc--ccccEEEEEeCCCCCCCCCCC
Q 026113          105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~~~~~~~  173 (243)
                       ........++  ..+|++++|++++.....+   ....++.......  ...|+++|+||+|+.+.....
T Consensus        96 -~~~~~~~~~~--~~~d~iilV~D~~~~~s~~---~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~  160 (217)
T 2f7s_A           96 -RFRSLTTAFF--RDAMGFLLMFDLTSQQSFL---NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN  160 (217)
T ss_dssp             -HHHHHHHHHH--TTCCEEEEEEETTCHHHHH---HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred             -hHHhHHHHHh--cCCCEEEEEEECcCHHHHH---HHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC
Confidence             2222223333  5899999998876432111   1222333222111  236899999999986443433

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.58  E-value=5.4e-15  Score=117.79  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||++.+++...  .....+++..........++  ..+.+|||||..+......       .++
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~   78 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LSY   78 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hhc
Confidence            579999999999999999999997763  22222222223333334444  4899999999965443221       111


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++... +......|+..+....+   ..|+++|+||+|+.
T Consensus        79 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  126 (212)
T 2j0v_A           79 --RGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR  126 (212)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence              5899999998886432 22222356666665533   36999999999985

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.58  E-value=2e-14  Score=121.61  Aligned_cols=125  Identities=21%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCee---EEEE--------------------------------
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP---VMVS--------------------------------   81 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~---~~~~--------------------------------   81 (243)
                      ....+|+++|.+|+|||||+|+|+|......... .+|..+   ....                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG-IVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCC-ceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3567999999999999999999999875221110 001111   0000                                


Q ss_pred             -------------------------eeeCCeEEEEEeCCCCCCCC------CCcHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113           82 -------------------------RSRAGFTLNIVDTPGLIEGG------YVNYHAIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus        82 -------------------------~~~~~~~~~viDTPG~~~~~------~~~~~~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                                               ....+.++.+|||||+.+..      ............++  ..+|++++|++..
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~  178 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPA  178 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEES
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEec
Confidence                                     11134579999999997522      12222333334444  3889999997653


Q ss_pred             CcccChhH-HHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          131 VYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       131 ~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ...+...+ ..+++.+..     ...|+++|+||+|+.+.
T Consensus       179 ~~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~  213 (315)
T 1jwy_B          179 NTDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK  213 (315)
T ss_dssp             SSCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred             CcchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence            22333222 344444332     23799999999998744

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.58  E-value=3.5e-15  Score=116.36  Aligned_cols=116  Identities=16%  Similarity=0.100  Sum_probs=74.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++....  ....++...........++  ..+.+|||||..+......       .+ 
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~-   75 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS-   75 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------GG-
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hh-
Confidence            5799999999999999999999987632  1111222112222233333  5789999999854322211       11 


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..++|++++|++++... +......|+..+.....   ..|+++|+||+|+.
T Consensus        76 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  124 (184)
T 1m7b_A           76 -YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR  124 (184)
T ss_dssp             -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred             -cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence             25899999998886532 22222455566655432   36999999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.58  E-value=2e-14  Score=113.14  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=76.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCC-CCCcHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEG-GYVNYHAIQLIKRF  114 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~-~~~~~~~~~~~~~~  114 (243)
                      ..+||+++|.+|+|||||+|.+++.........++.+.+.......+++.  .+.+|||+|.... ......   .+   
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~---~~---   78 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDH---CM---   78 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGG---HH---
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHh---hc---
Confidence            56999999999999999999999754323333333333333444456665  5678999997542 111111   12   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                         ..+|++++|++++.....+....+...+...... ...|+++|+||+|+...+....
T Consensus        79 ---~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~  134 (192)
T 2cjw_A           79 ---QVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSV  134 (192)
T ss_dssp             ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCH
T ss_pred             ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccH
Confidence               2679999998887543223334455555544221 2369999999999864344443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.57  E-value=2.8e-15  Score=126.46  Aligned_cols=120  Identities=17%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHHH-
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVNYHAIQLIKRFL-  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~-~~~~~~~~~~~~~~~~~-  115 (243)
                      +..+|+++|++|+|||||+|+|+|.....++..+.+|...........+.++.+|||||+. ..   .....+.+.... 
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~   83 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence            4568999999999999999999999876666666666655555566778899999999995 11   111111111111 


Q ss_pred             -hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 -LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 -~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ....+|++++|++...  ++..+..+++.+..     ...|+++|+||+|+.
T Consensus        84 ~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV  129 (301)
T ss_dssp             SCCCCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred             HHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence             1257899999977754  66655544443331     236999999999985

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.57  E-value=2.8e-14  Score=114.12  Aligned_cols=124  Identities=15%  Similarity=0.160  Sum_probs=75.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ...++|+++|.+|+|||||+|+|++.......  .  +..+ .....+.+..+.+|||||+....   ......++... 
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~--~--~~~~-~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~-   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--V--SQEP-LSAADYDGSGVTLVDFPGHVKLR---YKLSDYLKTRA-   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC--C--CSSC-EEETTGGGSSCEEEECCCCGGGT---HHHHHHHHHHG-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee--e--ecCc-eEEEEeeCceEEEEECCCcHHHH---HHHHHHHHhcc-
Confidence            36799999999999999999999987632110  0  0011 11122356689999999995432   22233333211 


Q ss_pred             cCCCcEEEEEEeCC-CcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLD-VYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       117 ~~~~~~il~v~~~d-~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~~~  170 (243)
                       ..+|++++|+++. ..........++..+.....  .....|+++|+||+|+....
T Consensus        81 -~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B           81 -KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  136 (218)
T ss_dssp             -GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             -ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence             2489999998876 32222334444444443321  11237999999999996443

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.56  E-value=2.9e-15  Score=116.08  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|+|||||+|++++... . ....+++..........++  ..+.+|||||..+......       .++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~   77 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTF-P-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LSY   77 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCC-C-----------CBCCCC-------CEEECCCC-CTTTTTGG-------GGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc
Confidence            579999999999999999999997753 1 1211111111111122233  4567999999865432221       111


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++... +......++..+.....   ..|+++|+||+|+.
T Consensus        78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  125 (182)
T 3bwd_D           78 --RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR  125 (182)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence              4899999998886432 22222346666666533   36999999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.5e-14  Score=124.97  Aligned_cols=117  Identities=18%  Similarity=0.256  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFL  115 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~~  115 (243)
                      .+|.++|.+|+|||||+|+|++... .+.++|.+|.++......+.+.+++++||||+.......    ..+++.++   
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~---  148 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR---  148 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH---
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH---
Confidence            5899999999999999999999874 678889999999998899999999999999997653322    22333333   


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc-ccccEEEEEeCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQL  166 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~  166 (243)
                         .+|+|++|++...  . ..+.+.+..-...++.. ..+|.++++||+|.
T Consensus       149 ---~ad~il~vvD~~~--p-~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          149 ---TCNLLFIILDVNK--P-LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             ---HCSEEEEEEETTS--H-HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             ---hcCccccccccCc--c-HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence               7899999966642  1 12333333333334422 23688999999986

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.56  E-value=6.2e-15  Score=117.40  Aligned_cols=117  Identities=16%  Similarity=0.093  Sum_probs=74.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|.+|+|||||+|.+++....  ....++...........++  ..+.+|||||.........       .+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~   96 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS   96 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------hh
Confidence            36799999999999999999999987632  2211222112222233333  5799999999854322211       11


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..++|++++|++++... +......|+..+.+...   ..|+++|+||+|+.
T Consensus        97 --~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  145 (205)
T 1gwn_A           97 --YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR  145 (205)
T ss_dssp             --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred             --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence              15899999998886532 22222456666655432   36999999999986

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.56  E-value=8.8e-15  Score=136.23  Aligned_cols=121  Identities=18%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEE-------Eee--------------------eCC----
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV-------SRS--------------------RAG----   86 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~-------~~~--------------------~~~----   86 (243)
                      ..++|+++|.+|+|||||+|+|+|..+..++..|++...+...       ...                    ..+    
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            6899999999999999999999999876666655442111100       000                    000    


Q ss_pred             --------------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHH
Q 026113           87 --------------------------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQ  140 (243)
Q Consensus        87 --------------------------~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~  140 (243)
                                                ..+.+|||||+.+......    .+..++  ..+|++|+|++.+. ..+..+..
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~----~~~~~i--~~aD~vL~Vvda~~-~~s~~e~~  220 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNE----LSLGYV--NNCHAILFVMRASQ-PCTLGERR  220 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHH----HHTHHH--HSSSEEEEEEETTS-TTCHHHHH
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHH----HHHHHH--HhCCEEEEEEeCCC-ccchhHHH
Confidence                                      3699999999865332222    222333  38999999987754 24555554


Q ss_pred             HHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          141 ITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       141 ~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      .+..   .... ...|+++|+||+|+...
T Consensus       221 ~l~~---~l~~-~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          221 YLEN---YIKG-RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHH---HTTT-SCCCEEEEEECGGGGGG
T ss_pred             HHHH---HHHh-hCCCEEEEEECcccccc
Confidence            4322   1211 13589999999998633

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.56  E-value=4.3e-14  Score=120.61  Aligned_cols=116  Identities=12%  Similarity=0.063  Sum_probs=72.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ++++|+++|.+|+|||||+|+|++....  ...+  |...........+..+.+|||||.........   ..+      
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---~~~------  230 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR---HYF------  230 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CCSHH---HHH------
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHH---HHh------
Confidence            4579999999999999999999988742  2222  33344455667888999999999754433221   122      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++|+|++++..........++..+..... ....|+++|+||+|+.
T Consensus       231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~  279 (329)
T 3o47_A          231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP  279 (329)
T ss_dssp             TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCC
Confidence            489999999888643221222222222222111 1236899999999986

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.56  E-value=5.7e-14  Score=109.50  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFL  115 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~----~~~~~~~~~~  115 (243)
                      ++|+++|.+|+|||||+|++++... .....++.+.......  ..  .+.+|||||+.+....+.    ........++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999998873 4444455554443332  22  689999999865443332    1222222333


Q ss_pred             h--cCCCcEEEEEEeCCCcccChhHHHHHHH--------HHHHhcccccccEEEEEeCCCCCC
Q 026113          116 L--NKTIDVLLYVDRLDVYRVDNLDKQITRA--------ITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       116 ~--~~~~~~il~v~~~d~~~~~~~~~~~l~~--------l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .  ...++++++|.+.+  .+......|...        +..... ....|+++|+||+|+..
T Consensus        77 ~~~~~~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  136 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIK  136 (190)
T ss_dssp             HHHGGGCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCS
T ss_pred             HhhhccCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccC
Confidence            2  34677888885543  222221222211        111111 12369999999999863

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.54  E-value=1.2e-13  Score=115.76  Aligned_cols=124  Identities=21%  Similarity=0.311  Sum_probs=71.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCC----------------------CCCe--------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQS----------------------EGPR--------------   76 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~~~----------------------~t~~--------------   76 (243)
                      ..++|+++|.+|+|||||+|+|+|.....     +...|.                      ++..              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            56799999999999999999999987532     111121                      1100              


Q ss_pred             ---------eEEEEeee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCCcEE-EEEEeCCCcccChhHH
Q 026113           77 ---------PVMVSRSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVL-LYVDRLDVYRVDNLDK  139 (243)
Q Consensus        77 ---------~~~~~~~~-~~~~~~viDTPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~i-l~v~~~d~~~~~~~~~  139 (243)
                               ........ .+..+.+|||||+.+...   ..   ......+..++  ..++.+ |+|++.+. .+...+.
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~  181 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDA  181 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHH
Confidence                     00000011 136899999999975321   11   12333344444  355544 47866653 2333332


Q ss_pred             -HHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          140 -QITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       140 -~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                       .+++.+..     ...|+++|+||+|+.+.
T Consensus       182 ~~~~~~~~~-----~~~~~i~V~NK~Dl~~~  207 (299)
T 2aka_B          182 LKIAKEVDP-----QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHHCT-----TCSSEEEEEECGGGSCT
T ss_pred             HHHHHHhCC-----CCCeEEEEEEccccCCC
Confidence             33333321     23699999999999744

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.53  E-value=1.6e-13  Score=118.58  Aligned_cols=124  Identities=21%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             ceE-EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 026113           39 TLT-ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L  116 (243)
Q Consensus        39 ~~~-IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-~  116 (243)
                      .++ |+++|.+|+|||||+|.|+|... .+.+.+.+|.++......++|..+.++||||+....  .....+.++..+ .
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI--PPQIVDAFFVTLSE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC--CGGGHHHHHHHHHG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC--CHHHHHHHHHHHHH
Confidence            455 99999999999999999999874 455556667666667777888999999999985421  111111122211 1


Q ss_pred             cCCCcEEEEEEeCCCcc--cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...+|++++|+++....  .......+.+.+.. ++.. ..|+++|+||+|+.
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~  305 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKI  305 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGC
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCC
Confidence            25889999997765321  11111222333333 3311 26899999999986

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.53  E-value=1.1e-14  Score=113.65  Aligned_cols=117  Identities=18%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNYHAIQLIK  112 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~-~~~~t~~~~~~~~~~-----~~~~~~viDTPG~~~~~~~~~~~~~~~~  112 (243)
                      .+||+++|.+|+|||||+|.+++........ .++.+..........     ....+.+|||||+.......       .
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~   74 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------P   74 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS-------H
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh-------H
Confidence            5799999999999999999999863222222 222222222222111     35589999999974322111       1


Q ss_pred             HHHhcCCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++  .+++++++|++++.. ...+....|+..+.....   ..|+++|+||+|+.
T Consensus        75 ~~~--~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  125 (184)
T 2zej_A           75 HFM--TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS  125 (184)
T ss_dssp             HHH--HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred             HHc--cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence            122  268999999887542 111223445555544321   36999999999985

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.53  E-value=3.7e-14  Score=111.04  Aligned_cols=120  Identities=13%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCCCeeEEE-E-----e-ee--CCeEEEEEeCCCCCCCCCCcH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ---SEGPRPVMV-S-----R-SR--AGFTLNIVDTPGLIEGGYVNY  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~---~~t~~~~~~-~-----~-~~--~~~~~~viDTPG~~~~~~~~~  105 (243)
                      ..+||+++|.+|+|||||++.+.+..........   .....++.. .     . ..  ....+.+|||||..+..   .
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~   89 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---A   89 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---H
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---H
Confidence            5699999999999999999988876432211100   000011111 0     0 11  23479999999986432   2


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHH----HHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT----RAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l----~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..    ..++  .++|++++|++++... .......+    .++..........|+++|+||+|+.
T Consensus        90 ~~----~~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~  148 (198)
T 3t1o_A           90 SR----KLIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP  148 (198)
T ss_dssp             HH----HHHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred             HH----HHHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence            11    1222  5899999998886322 11222222    2333321112347999999999985

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.53  E-value=1.9e-14  Score=123.26  Aligned_cols=120  Identities=17%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCC----CCcHHHHHHHHHHH
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGG----YVNYHAIQLIKRFL  115 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~----~~~~~~~~~~~~~~  115 (243)
                      +|+++|.+|||||||+|+|++... .+..++.+|..+......+.+ ..+.+|||||+.+..    .....+++.+.   
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~---  235 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE---  235 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH---
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH---
Confidence            688999999999999999998764 345666667666666666665 789999999975321    12233333332   


Q ss_pred             hcCCCcEEEEEEeCCC---cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~---~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         .++++|+|+++..   ....+....++..+......-..+|+++|+||+|+.
T Consensus       236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~  287 (342)
T 1lnz_A          236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  287 (342)
T ss_dssp             ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence               6899999988754   222223344555555532212347999999999985

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.52  E-value=1.1e-13  Score=124.02  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc------------------------------ccCCCCCCCeeEEEEeeeC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRA   85 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~------------------------------~~~~~~~t~~~~~~~~~~~   85 (243)
                      .+..++|+++|.+|+|||||+|+|++.....                              .....+.|...........
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            3468999999999999999999998651100                              0111233444444555667


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc------cChhHHHHHHHHHHHhcccccccEEE
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALI  159 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~iv  159 (243)
                      +..+.+|||||+.+.       ...+..++  ..+|++|+|++++...      ........+.. ....+.   .|+++
T Consensus       110 ~~~~~iiDTPG~~~f-------~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~-~~~~~~---~~iIv  176 (483)
T 3p26_A          110 RANFTIVDAPGHRDF-------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLL-ASSLGI---HNLII  176 (483)
T ss_dssp             SCEEEEECCCCCGGG-------HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHH-HHHTTC---CCEEE
T ss_pred             CceEEEEECCCcHHH-------HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHH-HHHcCC---CcEEE
Confidence            889999999999432       22233333  4899999998876421      11222222222 222332   57999


Q ss_pred             EEeCCCCCC
Q 026113          160 VLTHAQLSL  168 (243)
Q Consensus       160 V~tk~D~~~  168 (243)
                      |+||+|+.+
T Consensus       177 viNK~Dl~~  185 (483)
T 3p26_A          177 AMNKMDNVD  185 (483)
T ss_dssp             EEECGGGGT
T ss_pred             EEECcCccc
Confidence            999999863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.51  E-value=2e-13  Score=117.84  Aligned_cols=125  Identities=19%  Similarity=0.232  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE-----------------------------------------
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----------------------------------------   78 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~-----------------------------------------   78 (243)
                      .+|+++|.+|+|||||+|+|+|....+.+.. ..|..+.                                         
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            4999999999999999999999764332211 1111100                                         


Q ss_pred             -------------EEEe-eeCCeEEEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhH
Q 026113           79 -------------MVSR-SRAGFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD  138 (243)
Q Consensus        79 -------------~~~~-~~~~~~~~viDTPG~~~~~~------~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~  138 (243)
                                   .... ......+.+|||||+.+...      ...........++  .++|++++|++.......  .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~--~  189 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLA--T  189 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGG--G
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcC--C
Confidence                         0010 11244699999999987522      1122333344444  489988888544222211  1


Q ss_pred             HHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       139 ~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                      ..++..+......  ..|+++|+||+|+.+++.
T Consensus       190 ~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~  220 (360)
T 3t34_A          190 SDAIKISREVDPS--GDRTFGVLTKIDLMDKGT  220 (360)
T ss_dssp             CHHHHHHHHSCTT--CTTEEEEEECGGGCCTTC
T ss_pred             HHHHHHHHHhccc--CCCEEEEEeCCccCCCcc
Confidence            2334444433222  369999999999975443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.51  E-value=6.1e-14  Score=118.99  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ....++|+++|.+|+|||||+|.+++...  .....+++..........++..  +.+|||||..+......       .
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~  222 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------L  222 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG-------G
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH-------H
Confidence            34679999999999999999999997753  2223333333333344556654  55999999854432211       1


Q ss_pred             HHhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +  ...+|++++|++++... +......++..+....+   ..|+++|+||+|+.
T Consensus       223 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~  272 (332)
T 2wkq_A          223 S--YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR  272 (332)
T ss_dssp             G--CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred             h--ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence            1  15899999998886532 22222245566665433   37999999999985

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.49  E-value=6.2e-13  Score=104.96  Aligned_cols=125  Identities=14%  Similarity=0.077  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|++|+|||||+|.++|..... ...+..+.........++|.  .+.+|||||..........   .+    
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~---~~----   75 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA---YY----   75 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHH---HH----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHH---HH----
Confidence            35899999999999999999999876322 22233333444445566775  5778999997544322211   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        ..++++++|+++......+....++..+.....  ...|+++|+||+|+.+......
T Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~  130 (199)
T 2f9l_A           76 --RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPT  130 (199)
T ss_dssp             --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCH
T ss_pred             --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCH
Confidence              478999999887543211222344544444322  2368999999999864444443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.49  E-value=1.2e-13  Score=125.25  Aligned_cols=123  Identities=15%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEe---------------------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSR---------------------------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~~~~---------------------------------   82 (243)
                      ...+|+++|.+|+|||||+|+|+|....  .++..+.++........                                 
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4579999999999999999999998854  24444443321111100                                 


Q ss_pred             ---eeCC---eEEEEEeCCCCCCCCCC--cH--HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc
Q 026113           83 ---SRAG---FTLNIVDTPGLIEGGYV--NY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ  152 (243)
Q Consensus        83 ---~~~~---~~~~viDTPG~~~~~~~--~~--~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~  152 (243)
                         .+.+   ..+.+|||||+.+....  ..  ........++  ..+|++|+|++++.....+.+..+++.+...    
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----  217 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH----  217 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC----
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc----
Confidence               0000   36899999999763221  10  0112223333  3789999998876533556666666555432    


Q ss_pred             ccccEEEEEeCCCCC
Q 026113          153 IWKRALIVLTHAQLS  167 (243)
Q Consensus       153 ~~~~~ivV~tk~D~~  167 (243)
                       ..|+++|+||+|+.
T Consensus       218 -~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          218 -EDKIRVVLNKADMV  231 (550)
T ss_dssp             -GGGEEEEEECGGGS
T ss_pred             -CCCEEEEEECCCcc
Confidence             26899999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.49  E-value=3.3e-13  Score=116.20  Aligned_cols=126  Identities=19%  Similarity=0.249  Sum_probs=72.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc-----cCCCC----------------------CCCe--------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV-----STFQS----------------------EGPR--------------   76 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~-----~~~~~----------------------~t~~--------------   76 (243)
                      ...+|+++|.+|+|||||+|+|+|......     ...|.                      ++..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999875321     11121                      0000              


Q ss_pred             ---------eEEEEee-eCCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHH
Q 026113           77 ---------PVMVSRS-RAGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQ  140 (243)
Q Consensus        77 ---------~~~~~~~-~~~~~~~viDTPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~  140 (243)
                               ....... .++.++.+|||||+.....   ..   +.+...+..++. ...++||+|++.+. .+...+. 
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~-  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA-  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHH-
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHH-
Confidence                     0000011 1246799999999975321   11   123333444443 45567777766543 2333332 


Q ss_pred             HHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          141 ITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       141 ~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                       ++.+......  ..|+++|+||+|+.+.
T Consensus       187 -~~i~~~~~~~--~~~~i~V~NK~Dl~~~  212 (353)
T 2x2e_A          187 -LKVAKEVDPQ--GQRTIGVITKLDLMDE  212 (353)
T ss_dssp             -HHHHHHHCTT--CTTEEEEEECGGGSCT
T ss_pred             -HHHHHHhCcC--CCceEEEeccccccCc
Confidence             2233332222  3699999999999643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.48  E-value=3.7e-13  Score=116.23  Aligned_cols=124  Identities=21%  Similarity=0.249  Sum_probs=63.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCCCee--EEEEeeeCCe--EEEEEeCCCCCCCCCC----
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPRP--VMVSRSRAGF--TLNIVDTPGLIEGGYV----  103 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~------~~t~~~--~~~~~~~~~~--~~~viDTPG~~~~~~~----  103 (243)
                      ..++|+++|.+|+|||||+|+|++...+.....+      ..|...  ........+.  .+.+|||||+++....    
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            5799999999999999999999987654332211      112111  1112223443  7899999999654321    


Q ss_pred             ---cHHHHHHHHHHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          104 ---NYHAIQLIKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       104 ---~~~~~~~~~~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ...+...+..++.           ...+|+++|++......+.+.+..+++.+    ..  ..|+|+|+||+|+.
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~  187 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTL  187 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCC
Confidence               1111111112221           23457888885432334666665555444    22  36999999999986

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.22  E-value=2.7e-15  Score=118.98  Aligned_cols=118  Identities=17%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .+.++|+++|.+|+|||||+|++++....  ....+++..........++  ..+.+|||||..+.....       ..+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~   98 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLS   98 (204)
Confidence            36799999999999999999999976532  2222222222222223333  457799999985432211       111


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +  .++|++++|++++... +......++..+....+   ..|+++|+||+|+.+
T Consensus        99 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~  148 (204)
T 3th5_A           99 Y--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  148 (204)
Confidence            2  4789999997775432 33323356666655433   369999999999863

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.48  E-value=1.1e-12  Score=118.86  Aligned_cols=123  Identities=15%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEE------Eee----eCCeEEEEEeCCCCCCCCCCcHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV------SRS----RAGFTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~------~~~----~~~~~~~viDTPG~~~~~~~~~~  106 (243)
                      ...+||+++|.+|+|||||+|++++.... ....++.+......      ...    ..+..+.+|||||..........
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            46799999999999999999999988632 11112222221111      111    12578999999997655544332


Q ss_pred             HHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       107 ~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                         .++      ++|++++|+++.  .. +....++..+....+   ..|+++|+||+|+.+......+
T Consensus       118 ---~l~------~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~  171 (535)
T 3dpu_A          118 ---FMT------RSSVYMLLLDSR--TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQK  171 (535)
T ss_dssp             ---HHH------SSEEEEEEECGG--GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHH
T ss_pred             ---Hcc------CCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHH
Confidence               232      799999996654  33 455667777776543   3699999999999754444433

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.47  E-value=4.6e-13  Score=113.33  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc--CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ||+++|.+|+||||+++.+.+.......  ..++.......  . ....++.+|||||+.+.....-....++      +
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~~~v~LqIWDTAGQErf~~~~l~~~~yy------r   71 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-STLIDLAVMELPGQLNYFEPSYDSERLF------K   71 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-CSSSCEEEEECCSCSSSCCCSHHHHHHH------T
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-ccEEEEEEEECCCchhccchhhhhhhhc------c
Confidence            6899999999999999988765321111  11211222111  1 1246899999999986632110111122      5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +++++++|+++... +.+....+.+++..........|+++|+||+|+.
T Consensus        72 ~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~  119 (331)
T 3r7w_B           72 SVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL  119 (331)
T ss_dssp             TCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred             CCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence            99999999777543 3333333333333221111236999999999996

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.45  E-value=1.1e-12  Score=116.13  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=73.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|.+++|||||+|+|++.......                              ..++.|.+.........+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            46799999999999999999999765211110                              012234444444556778


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC------hhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.+|||||+.+       ....+...+  ..+|++|+|++++..-+.      ......+..+.. .+.   .++++|
T Consensus        95 ~~~~iiDTPGh~~-------f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~iIvv  161 (439)
T 3j2k_7           95 KHFTILDAPGHKS-------FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHLIVL  161 (439)
T ss_pred             eEEEEEECCChHH-------HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeEEEE
Confidence            8999999999842       222333333  379999999777542110      122333322222 221   349999


Q ss_pred             EeCCCCC
Q 026113          161 LTHAQLS  167 (243)
Q Consensus       161 ~tk~D~~  167 (243)
                      +||+|+.
T Consensus       162 iNK~Dl~  168 (439)
T 3j2k_7          162 INKMDDP  168 (439)
T ss_pred             eecCCCc
Confidence            9999985

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.45  E-value=1.9e-13  Score=119.38  Aligned_cols=88  Identities=23%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---------------------eC---CeEEEEEeCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTP   95 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~---------------------~~---~~~~~viDTP   95 (243)
                      ++|+++|.+|+|||||+|+|++.. +.++.+|.+|..+......                     +.   ..++.+||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            589999999999999999999987 5666777666655443211                     12   2579999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHH-hcCCCcEEEEEEeCCC
Q 026113           96 GLIEGGYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDV  131 (243)
Q Consensus        96 G~~~~~~~~~~~~~~~~~~~-~~~~~~~il~v~~~d~  131 (243)
                      |+.+.....+.   ....++ ....+|++++|++...
T Consensus        80 G~~~~a~~~~~---l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           80 GLVPGAHEGRG---LGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             ------------------CCCSSTTCSEEEEEEETTC
T ss_pred             Ccccchhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence            99653221111   111222 1258999999988754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.44  E-value=1.9e-12  Score=120.58  Aligned_cols=125  Identities=21%  Similarity=0.298  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE---------------------------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV---------------------------------------   78 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~---------------------------------------   78 (243)
                      .-.+|+++|.+++|||||+|+|+|....+.+... +|..+.                                       
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4579999999999999999999998753333221 121111                                       


Q ss_pred             ------------EEEeee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHH
Q 026113           79 ------------MVSRSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK  139 (243)
Q Consensus        79 ------------~~~~~~-~~~~~~viDTPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~  139 (243)
                                  ...... +..++.+|||||+.....   ..   ....+.+..++. ..+|++|+|++... .....+.
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~  206 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA  206 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHH
Confidence                        111111 233689999999986321   11   234444455554 68899999977653 2344443


Q ss_pred             -HHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          140 -QITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       140 -~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                       .+++.+...     ..|+++|+||+|+.++.
T Consensus       207 l~ll~~L~~~-----g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          207 LKIAKEVDPQ-----GQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHHHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred             HHHHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence             444444321     36999999999997443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.44  E-value=2.6e-12  Score=100.87  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..++|+++|.+|||||||+|.+++.... ....++.+.........++|..  +.+|||||+.........   .+    
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~---~~----   99 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSA---YY----   99 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHH---HH----
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHH---Hh----
Confidence            4589999999999999999999987642 2222333333344555667764  557999998654333221   12    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  171 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~  171 (243)
                        ..++++++|+++......+....++..+.+...  ...++++|+||+|+.+...
T Consensus       100 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~  151 (191)
T 1oix_A          100 --RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRA  151 (191)
T ss_dssp             --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCC
T ss_pred             --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccc
Confidence              478899999776532211222334444443322  2368999999999864333

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.42  E-value=3.1e-13  Score=124.04  Aligned_cols=119  Identities=14%  Similarity=0.138  Sum_probs=74.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|.+|+|||||+|+|++........                              .++.|...........+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            467999999999999999999999764221110                              12334444444555678


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc------cChhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.||||||+.+       ....+..+  ...+|++|+|++++...      ........+..+ ...+.   .++|+|
T Consensus       245 ~~~~iiDTPG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~lgi---~~iIVV  311 (611)
T 3izq_1          245 ANFTIVDAPGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLGI---HNLIIA  311 (611)
T ss_dssp             CEEEEEECCSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTTTC---CEEEEE
T ss_pred             ceEEEEECCCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHcCC---CeEEEE
Confidence            8999999999843       11222222  25899999997775310      112222222222 22231   469999


Q ss_pred             EeCCCCCC
Q 026113          161 LTHAQLSL  168 (243)
Q Consensus       161 ~tk~D~~~  168 (243)
                      +||+|+.+
T Consensus       312 vNKiDl~~  319 (611)
T 3izq_1          312 MNKMDNVD  319 (611)
T ss_dssp             EECTTTTT
T ss_pred             Eecccccc
Confidence            99999863

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.42  E-value=1.9e-12  Score=114.36  Aligned_cols=116  Identities=16%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc----------CCC----------------------CCCCeeEEEEeeeC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----------TFQ----------------------SEGPRPVMVSRSRA   85 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~   85 (243)
                      ..++|+++|..++|||||+|+|++.......          ..+                      +.|...........
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~  102 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA  102 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence            5699999999999999999999865311100          001                      11222223334456


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.+|||||+.+.   ..    .+..++  ..+|++|+|++++.. ........+..+.. .+.   +|+++|+||+|
T Consensus       103 ~~~~~iiDtpGh~~f---~~----~~~~~~--~~aD~~ilVvDa~~g-~~~qt~~~l~~~~~-~~~---~~iIvviNK~D  168 (434)
T 1zun_B          103 KRKFIIADTPGHEQY---TR----NMATGA--STCDLAIILVDARYG-VQTQTRRHSYIASL-LGI---KHIVVAINKMD  168 (434)
T ss_dssp             SEEEEEEECCCSGGG---HH----HHHHHH--TTCSEEEEEEETTTC-SCHHHHHHHHHHHH-TTC---CEEEEEEECTT
T ss_pred             CceEEEEECCChHHH---HH----HHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHH-cCC---CeEEEEEEcCc
Confidence            788999999998432   12    222333  589999999887642 33444444444333 231   46999999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      +.
T Consensus       169 l~  170 (434)
T 1zun_B          169 LN  170 (434)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.38  E-value=2.4e-12  Score=116.20  Aligned_cols=115  Identities=10%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc---------------c------cCCCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------V------STFQSEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +..+|+++|.+|+|||||+|+|++.....               .      ....+.|.........+.+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            46899999999999999999997221100               0      00122344444556678899999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.+..   .+..+.+      ..+|++|+|++... .........+..+...     ..|+++|+||+|+.
T Consensus        92 ~~df~---~~~~~~l------~~aD~allVvDa~~-g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~  147 (528)
T 3tr5_A           92 HADFT---EDTYRTL------TAVDSALMVIDAAK-GVEPRTIKLMEVCRLR-----HTPIMTFINKMDRD  147 (528)
T ss_dssp             STTCC---HHHHHGG------GGCSEEEEEEETTT-CSCHHHHHHHHHHHTT-----TCCEEEEEECTTSC
T ss_pred             chhHH---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence            96543   2333233      38999999977754 2334444444333321     36999999999984

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.38  E-value=2.5e-12  Score=112.63  Aligned_cols=116  Identities=12%  Similarity=0.054  Sum_probs=75.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC-------ccc---ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEK-------AVT---VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~-------~~~---~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ...++|+++|.+++|||||+|+|++..       .+.   ..+      ..+.|...........+..+.+|||||+.+.
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            467999999999999999999999731       000   000      1223333334445556789999999998532


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                             ...+..++  ..+|++|+|++++. ........++..+... +    .| +++|+||+|+.
T Consensus        89 -------~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~  141 (405)
T 2c78_A           89 -------IKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV  141 (405)
T ss_dssp             -------HHHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred             -------HHHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence                   22233333  48999999988754 2334445555444432 2    46 89999999985

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.38  E-value=2.1e-12  Score=113.12  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=71.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC---------CeeEE----------EEeeeCCeEEEEEeCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---------PRPVM----------VSRSRAGFTLNIVDTPGL   97 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t---------~~~~~----------~~~~~~~~~~~viDTPG~   97 (243)
                      ...++|+++|.+|+|||||+|+|++........+...+         .....          .........+.+|||||.
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            46799999999999999999999985321110000000         00000          000112268999999997


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+       ....+..++  ..+|++++|++++..........++..+... +.   +|+++|+||+|+.
T Consensus        86 ~~-------~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~  142 (403)
T 3sjy_A           86 EV-------LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV  142 (403)
T ss_dssp             GG-------GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             HH-------HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence            32       222233333  4899999998876532244445555444432 32   5899999999986

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.37  E-value=3.3e-12  Score=114.23  Aligned_cols=116  Identities=14%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc------cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL  110 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~  110 (243)
                      .+.++|+++|..++|||||+|+|++....      .....++.|.........+++..+.+|||||..       +....
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~   89 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRA   89 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHH
Confidence            35799999999999999999999987621      111222233332223345678899999999972       23333


Q ss_pred             HHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          111 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       111 ~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +...+  ..+|++|+|++++. .......+.+..+.. .+    .|.++|+||+|+.
T Consensus        90 ~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~  138 (482)
T 1wb1_A           90 VVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDH-FN----IPIIVVITKSDNA  138 (482)
T ss_dssp             HHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCBCEEEECTTSS
T ss_pred             HHHHH--hhCCEEEEEEecCC-CccHHHHHHHHHHHH-cC----CCEEEEEECCCcc
Confidence            33333  58999999987754 233444445544433 22    5779999999986

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.36  E-value=2e-12  Score=114.95  Aligned_cols=118  Identities=13%  Similarity=0.187  Sum_probs=71.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC-ccc-----------------------ccC------CCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEK-AVT-----------------------VST------FQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~-~~~-----------------------~~~------~~~~t~~~~~~~~~~~~   86 (243)
                      ...++|+++|.+++|||||+|+|++.. .+.                       ..+      ..+.|...........+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            356999999999999999999998641 000                       000      12233333334455677


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC------hhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.+|||||+.+       +...+..++  ..+|++|+|++++...+.      ......+..+ ...+  . .++++|
T Consensus        85 ~~~~iiDtPGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~~--v-~~iivv  151 (458)
T 1f60_A           85 YQVTVIDAPGHRD-------FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTLG--V-RQLIVA  151 (458)
T ss_dssp             EEEEEEECCCCTT-------HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHTT--C-CEEEEE
T ss_pred             ceEEEEECCCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHcC--C-CeEEEE
Confidence            8999999999742       222233222  589999999777531110      0122222222 2222  1 359999


Q ss_pred             EeCCCCC
Q 026113          161 LTHAQLS  167 (243)
Q Consensus       161 ~tk~D~~  167 (243)
                      +||+|+.
T Consensus       152 iNK~Dl~  158 (458)
T 1f60_A          152 VNKMDSV  158 (458)
T ss_dssp             EECGGGG
T ss_pred             EEccccc
Confidence            9999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.36  E-value=1e-11  Score=98.47  Aligned_cols=121  Identities=19%  Similarity=0.207  Sum_probs=67.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~  113 (243)
                      +..+|+++|.+|+|||||+|.|+|.. ...+.+.++.+....  ...+.+ .+.+|||||+.......   +.+...+..
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            56899999999999999999999876 222233333332221  122233 68899999986432111   122223333


Q ss_pred             HHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++. ...++++++++++... ....+.....++..     ...|+++|.||+|+.
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~  150 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVD-----SNIAVLVLLTKADKL  150 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHH-----TTCCEEEEEECGGGS
T ss_pred             HHHhhhcccEEEEEEECCCC-CchhHHHHHHHHHH-----cCCCeEEEEecccCC
Confidence            332 2578999999877542 33333344444332     236899999999975

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.33  E-value=6.4e-12  Score=109.81  Aligned_cols=115  Identities=13%  Similarity=0.071  Sum_probs=71.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc----------ccC-----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT----------VST-----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~----------~~~-----~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      ..++|+++|..++|||||+++|++.....          ...     ..+.|...........+..+.+|||||+.    
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~----   77 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----   77 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH----
Confidence            46899999999999999999999742100          000     11112222222334567899999999984    


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                         ++...+..++  ..+|++|+|++++.. ........+..+.. .+    .| +++|+||+|+.
T Consensus        78 ---~f~~~~~~~~--~~aD~~ilVvda~~g-~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~  132 (397)
T 1d2e_A           78 ---DYVKNMITGT--APLDGCILVVAANDG-PMPQTREHLLLARQ-IG----VEHVVVYVNKADAV  132 (397)
T ss_dssp             ---HHHHHHHHTS--SCCSEEEEEEETTTC-SCHHHHHHHHHHHH-TT----CCCEEEEEECGGGC
T ss_pred             ---HHHHHHHhhH--hhCCEEEEEEECCCC-CCHHHHHHHHHHHH-cC----CCeEEEEEECcccC
Confidence               2222333332  589999999887642 33334444433332 22    46 78999999985

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.33  E-value=4.4e-12  Score=112.10  Aligned_cols=119  Identities=13%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC--cccc----------------------------cCCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEK--AVTV----------------------------STFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~--~~~~----------------------------~~~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..|+|||||+++|++..  +...                            ....+.|...........+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            357999999999999999999998641  1000                            0012233333333455677


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc------ChhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.+|||||+.+.       ...+..++  ..+|++|+|++++...+      .....+.+... ...+.   .++++|
T Consensus        84 ~~~~iiDtpG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~-~~~~~---~~iivv  150 (435)
T 1jny_A           84 YFFTIIDAPGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMGL---DQLIVA  150 (435)
T ss_dssp             CEEEECCCSSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTTC---TTCEEE
T ss_pred             eEEEEEECCCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHH-HHcCC---CeEEEE
Confidence            89999999998542       22233332  58999999988764211      11122222222 22221   479999


Q ss_pred             EeCCCCCC
Q 026113          161 LTHAQLSL  168 (243)
Q Consensus       161 ~tk~D~~~  168 (243)
                      +||+|+.+
T Consensus       151 iNK~Dl~~  158 (435)
T 1jny_A          151 VNKMDLTE  158 (435)
T ss_dssp             EECGGGSS
T ss_pred             EEcccCCC
Confidence            99999863

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.32  E-value=3.5e-12  Score=111.81  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-C----CCCCeeEEEE--eeeCC--eEEEEEeCCCCCCCCCCc---H
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-Q----SEGPRPVMVS--RSRAG--FTLNIVDTPGLIEGGYVN---Y  105 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~-~----~~t~~~~~~~--~~~~~--~~~~viDTPG~~~~~~~~---~  105 (243)
                      -.++|+++|++|+|||||+|.|+|......+.. .    ..+.......  ....+  ..+.+|||||++......   .
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            468999999999999999999999864222110 0    1111111111  11122  368999999997642111   1


Q ss_pred             HHHHHH----HHHH-----------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQLI----KRFL-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~~----~~~~-----------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.+.+    ..++           ..+.+|++||++......+...+..+++.+..      ..++|+|+||+|+.
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll  180 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  180 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence            111111    1121           12456778888333222466666666665542      26999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.30  E-value=2.6e-11  Score=109.53  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc---------------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~---------------~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +..+|+++|.+|+|||||+|+|++.....               ..+      ..+.|.........+.+..+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            46899999999999999999999642111               000      011122222344567888999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.+..   ....    +++  ..+|++|+|++.... ........+..+..     ...|+++|+||+|+.
T Consensus        92 ~~df~---~~~~----~~l--~~aD~~IlVvDa~~g-~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           92 HEDFS---EDTY----RTL--TAVDCCLMVIDAAKG-VEDRTRKLMEVTRL-----RDTPILTFMNKLDRD  147 (529)
T ss_dssp             STTCC---HHHH----HGG--GGCSEEEEEEETTTC-SCHHHHHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred             ChhHH---HHHH----HHH--HHCCEEEEEEeCCcc-chHHHHHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence            96543   2222    222  489999999777542 33322322222211     136899999999985

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.30  E-value=2.4e-13  Score=122.51  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++.+|+++|.+|+|||||+|+|++..... ...++.|.+........ .+..+.+|||||..+.......       +  
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~-------~--   72 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR-------G--   72 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBS-------S--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHH-------H--
Confidence            57899999999999999999999876432 23344444433333334 5668999999998655433221       1  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ...+|++++|++++. .........+..+..   .  ..|+++|+||+|+..
T Consensus        73 ~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~---~--~vPiIVViNKiDl~~  118 (537)
T 3izy_P           73 TQVTDIVILVVAADD-GVMKQTVESIQHAKD---A--HVPIVLAINKCDKAE  118 (537)
T ss_dssp             SBSBSSCEEECBSSS-CCCHHHHHHHHHHHT---T--TCCEEECCBSGGGTT
T ss_pred             HccCCEEEEEEECCC-CccHHHHHHHHHHHH---c--CCcEEEEEecccccc
Confidence            147899999977654 233333333333332   2  259999999999864

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.30  E-value=6.2e-11  Score=103.97  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeee---------------C--------CeEEEE
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSR---------------A--------GFTLNI   91 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~~~v   91 (243)
                      ...++|+++|..++|||||+++|+|.....  ....++.|.........+               .        ...+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            356999999999999999999999764211  111222233322111111               0        167999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           92 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        92 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |||||..       .+...+...+  ..+|++|+|++++.........+.+..+.. ++.   .|+++|+||+|+.
T Consensus        88 iDtPGh~-------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~  150 (410)
T 1kk1_A           88 IDAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELV  150 (410)
T ss_dssp             EECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGS
T ss_pred             EECCChH-------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCC
Confidence            9999973       2222222222  377999999887642113334444444332 332   5899999999986

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.29  E-value=5.8e-11  Score=110.52  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ...+|+++|.+|+|||||+|+|++.....     +      .+      ....|.........+.+..+.+|||||+.+.
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   88 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence            46899999999999999999999421100     0      01      1122333334456677899999999999653


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..++.+.++      .+|++|+|++... .........+..+...     ..|+++|+||+|+.
T Consensus        89 ---~~~~~~~l~------~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~  140 (693)
T 2xex_A           89 ---TVEVERSLR------VLDGAVTVLDAQS-GVEPQTETVWRQATTY-----GVPRIVFVNKMDKL  140 (693)
T ss_dssp             ---CHHHHHHHH------HCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred             ---HHHHHHHHH------HCCEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence               334444443      6899999977754 2344444444444332     36999999999986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.26  E-value=2.6e-12  Score=114.91  Aligned_cols=115  Identities=14%  Similarity=0.074  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ++.+|+++|..++|||||+++|++.... ....++.|.+...+...+++..+.+|||||+.+......       +  ..
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~-------~--~~   72 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA-------R--GA   72 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC-------S--SS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH-------H--HH
Confidence            5789999999999999999999976432 222233343333334456778899999999876543321       1  11


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..+|++++|++++.. ........+..+..     ...|+++++||+|+..
T Consensus        73 ~~aD~aILVVda~~g-~~~qT~e~l~~~~~-----~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           73 QATDIVVLVVAADDG-VMPQTIEAIQHAKA-----AQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             BSCSSEEEEEETTTB-SCTTTHHHHHHHHH-----TTCCEEEEEECSSSST
T ss_pred             hhCCEEEEEeecccC-ccHHHHHHHHHHHh-----cCceEEEEEEeccccc
Confidence            478999999887642 22223333333322     1368999999999863

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.25  E-value=8.4e-11  Score=103.06  Aligned_cols=119  Identities=16%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeee---------------C--------CeEEEEE
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSR---------------A--------GFTLNIV   92 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~~~vi   92 (243)
                      ..++|+++|..++|||||+++|+|.....  ....++.|..........               .        ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            57999999999999999999999764211  111122233221111100               1        1679999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113           93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus        93 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ||||..       .+...+.+  ....+|++|+|++++.........+.+..+. .++.   .|+++|+||+|+.+.
T Consensus        87 DtPGh~-------~f~~~~~~--~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           87 DSPGHE-------TLMATMLS--GASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKIIIVQNKIDLVDE  150 (408)
T ss_dssp             ECSSHH-------HHHHHHHT--TCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCEEEEEECTTSSCT
T ss_pred             ECCCHH-------HHHHHHHH--hHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeEEEEEEccCCCCH
Confidence            999972       22222221  1246799999988764211333344444333 2332   589999999999643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.25  E-value=3.8e-11  Score=103.88  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      +|+++|.+++|||||+++|+..         ..|.........+.+..+.+|||||+.+.   .......+      ..+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~---------giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~a   84 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK---------GTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NIS   84 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE---------EEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC---------CEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHC
Confidence            9999999999999999999811         12223334455667889999999999643   22333333      389


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccE-EEEEe-CCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLT-HAQL  166 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~t-k~D~  166 (243)
                      |++|+|++ +. .......+.+..+.. .+    .|. ++|+| |+|+
T Consensus        85 D~ailVvd-~~-g~~~qt~e~~~~~~~-~~----i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           85 DIAVLCIP-PQ-GLDAHTGECIIALDL-LG----FKHGIIALTRSDST  125 (370)
T ss_dssp             SEEEEEEC-TT-CCCHHHHHHHHHHHH-TT----CCEEEEEECCGGGS
T ss_pred             CEEEEEEc-CC-CCcHHHHHHHHHHHH-cC----CCeEEEEEEeccCC
Confidence            99999977 43 234444444444433 23    355 99999 9997

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.23  E-value=1.9e-11  Score=108.89  Aligned_cols=117  Identities=11%  Similarity=0.053  Sum_probs=63.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..++|||||+++|++.....                        ..+      ..+.|..........++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            357999999999999999999997421000                        000      01122222222345568


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc----C--hhHHHHHHHHHHHhccccccc-EEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV----D--NLDKQITRAITDNFGEQIWKR-ALI  159 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~----~--~~~~~~l~~l~~~~~~~~~~~-~iv  159 (243)
                      ..+.+|||||+.+..       ..+...+  ..+|++|+|++++...+    .  ......+... ...+    .| +++
T Consensus       121 ~~~~iiDtPGh~~f~-------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~----vp~iiv  186 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYV-------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQG----INHLVV  186 (467)
T ss_dssp             EEEEECCCCC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTT----CSSEEE
T ss_pred             eEEEEEECCCcHHHH-------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcC----CCEEEE
Confidence            899999999985431       1222222  48999999988754211    0  1122222222 2222    34 999


Q ss_pred             EEeCCCCC
Q 026113          160 VLTHAQLS  167 (243)
Q Consensus       160 V~tk~D~~  167 (243)
                      |+||+|+.
T Consensus       187 viNK~Dl~  194 (467)
T 1r5b_A          187 VINKMDEP  194 (467)
T ss_dssp             EEECTTST
T ss_pred             EEECccCC
Confidence            99999985

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.23  E-value=5.7e-11  Score=110.56  Aligned_cols=115  Identities=14%  Similarity=0.104  Sum_probs=72.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc-----cc------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~-----~~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ...+|+++|.+|+|||||+|+|+.....     .+      .+      ....|.........+.+..+.+|||||+.+.
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            4689999999999999999999832100     00      00      1122333334455677889999999999653


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..++.+.++      .+|++|+|++.... ........+..+...     ..|+++|+||+|+.
T Consensus        91 ---~~~~~~~l~------~aD~~ilVvDa~~g-~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~  142 (691)
T 1dar_A           91 ---TIEVERSMR------VLDGAIVVFDSSQG-VEPQSETVWRQAEKY-----KVPRIAFANKMDKT  142 (691)
T ss_dssp             ---HHHHHHHHH------HCSEEEEEEETTTC-SCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred             ---HHHHHHHHH------HCCEEEEEEECCCC-cchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence               233333443      78999999777542 333333333333321     36999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.23  E-value=7.8e-11  Score=99.16  Aligned_cols=124  Identities=19%  Similarity=0.233  Sum_probs=59.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCCCe--eEEEEeeeC--CeEEEEEeCCCCCCCCCC---c
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPR--PVMVSRSRA--GFTLNIVDTPGLIEGGYV---N  104 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~------~~t~~--~~~~~~~~~--~~~~~viDTPG~~~~~~~---~  104 (243)
                      -.++|+++|++|+|||||+|.|+|...+.....+      ..+..  .........  ...+.+|||||+++....   .
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4699999999999999999999987443322211      01111  111122222  247899999999543110   0


Q ss_pred             HHHHH----HHHHHH---h--------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          105 YHAIQ----LIKRFL---L--------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       105 ~~~~~----~~~~~~---~--------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .....    ....++   +        ...++++||++......+...+..   .+.... .  ..++++|+||+|+.
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l~-~--~~~iilV~~K~Dl~  168 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAIH-N--KVNIVPVIAKADTL  168 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHHT-T--TSCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHHH-h--cCCEEEEEEeCCCC
Confidence            11111    111222   1        123566777744332235555543   333332 2  25899999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.23  E-value=8.5e-11  Score=102.96  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRF  114 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~----~~~~~~~~~~~~  114 (243)
                      -.|+|+|.+|||||||+|+|++... .....+.+|..+........+ ..+.++||||+.+...    ......+.+   
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~---  233 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI---  233 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH---
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH---
Confidence            3589999999999999999998864 345555556555555555565 7899999999965321    222222222   


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..++++|+++++. .........+.+.+......-..+|.++|+||+|+.
T Consensus       234 ---era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~  282 (416)
T 1udx_A          234 ---ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  282 (416)
T ss_dssp             ---TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             ---HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence               4789999998875 121122222233333221111237999999999985

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.23  E-value=1.7e-12  Score=112.44  Aligned_cols=121  Identities=18%  Similarity=0.137  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIK  112 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~-~~~~~  112 (243)
                      ..+|+++|.+|+|||||+|+|++.     ....++..+++|.......  . +..+.++||||+.+.....+.. .+.+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            468999999999999999999987     3445667777776544432  2 2348999999998765332211 12333


Q ss_pred             HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .++....++.++++++....-+.. ....+..+.     ....|+++++||.|...
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~l~-----~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFG-GLARLDYIK-----GGRRSFVCYMANELTVH  288 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred             HHhcccccCceEEEEcCCceEEEC-CEEEEEEcc-----CCCceEEEEecCCcccc
Confidence            333446889999996664332111 111111111     12358999999999763

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.22  E-value=1e-12  Score=120.28  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|.+++|||||+|+|++........                              .++.|...........+
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            355899999999999999999997532111100                              12233333334445567


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc----c--ChhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----V--DNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~----~--~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.||||||+.+.....   ...+      ..+|++|+|++++...    +  .......+..+.. .+.   .++|+|
T Consensus       255 ~~i~iiDTPGh~~f~~~~---~~~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvv  321 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGM---IAGA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVS  321 (592)
T ss_dssp             ----CCEEESSSEEEEEC---CC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEE
T ss_pred             eEEEEEECCChHHHHHHH---HHHH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEE
Confidence            889999999986432211   1122      3789999997765311    1  2333333333332 231   359999


Q ss_pred             EeCCCCC
Q 026113          161 LTHAQLS  167 (243)
Q Consensus       161 ~tk~D~~  167 (243)
                      +||+|+.
T Consensus       322 iNKiDl~  328 (592)
T 3mca_A          322 VNKLDLM  328 (592)
T ss_dssp             EECGGGG
T ss_pred             Eeccccc
Confidence            9999986

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.22  E-value=2.2e-12  Score=111.59  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLI  111 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~  111 (243)
                      ..+|+++|.+|+|||||+|+|++..      ...++..+++|.......  . +..+.++||||+.+.....+. ..+.+
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L-DEESSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S-SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e-cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence            4789999999999999999999863      233556666665544332  2 223889999999877543221 12344


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      ..++....++.++++++.+..-+.. ....+..+.     ....|+++++||+|...
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~~d~l~-----~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFS-GLARFDYVS-----GGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred             HHhccccccCceEEEEcCCCEEEEc-ceEEEEEec-----CCCceEEEEecCccccc
Confidence            4444446788888886554322111 111111111     12368999999999763

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.22  E-value=3.6e-11  Score=100.27  Aligned_cols=67  Identities=21%  Similarity=0.331  Sum_probs=44.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~  106 (243)
                      ..+++++++|.+|+|||||+|+|+|...+.++..+++|.......   .+..+.++||||+..+...+.+
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE---ETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE---eCCCEEEEECcCcCCCCCCCHH
Confidence            467999999999999999999999998777777777665543221   2457999999999887665544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.21  E-value=2e-11  Score=104.95  Aligned_cols=84  Identities=20%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~~  102 (243)
                      ++|+++|.+|+|||||+|+|++.. +.+..+|.+|..+......+.+                 ..+.+|||||+.....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            789999999999999999999887 4566666666655443333443                 4799999999975421


Q ss_pred             ----CcHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113          103 ----VNYHAIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus       103 ----~~~~~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                          ....++..++      ++|++++|++..
T Consensus        82 ~~~gl~~~fl~~ir------~ad~il~VvD~~  107 (363)
T 1jal_A           82 KGEGLGNKFLANIR------ETDAIGHVVRCF  107 (363)
T ss_dssp             HHGGGTCCHHHHHH------TCSEEEEEEECS
T ss_pred             ccchHHHHHHHHHH------hcCeEEEEEecC
Confidence                1122333343      899999998774

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.18  E-value=1.9e-10  Score=95.38  Aligned_cols=123  Identities=20%  Similarity=0.301  Sum_probs=69.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccccc-------CCCCCCCee-EEEEeeeCC--eEEEEEeCCCCCCCCCCc---H
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS-------TFQSEGPRP-VMVSRSRAG--FTLNIVDTPGLIEGGYVN---Y  105 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~-------~~~~~t~~~-~~~~~~~~~--~~~~viDTPG~~~~~~~~---~  105 (243)
                      .++++++|++|+|||||+|.|+|......+       ..+...... ..+..+..+  ..+.++|+||++......   +
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999986533222       111111111 111111122  268999999997643211   1


Q ss_pred             HHHHHH----HHHH----h--------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          106 HAIQLI----KRFL----L--------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       106 ~~~~~~----~~~~----~--------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.+.+    ..+.    +        ...+++.+++++.....+...+..+++.+.+.      .++++|+||+|..
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l  153 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence            222221    1111    1        12368888885543334777777777666543      5899999999986

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.18  E-value=1.3e-10  Score=110.43  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeC----------------C
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------------G   86 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------~   86 (243)
                      ...+|+++|..|+|||||+|+|++........               ....|.........+.                +
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            56899999999999999999999652111100               0111221111222222                5


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.+|||||+.+..   .++...++      .+|++|+|+++... ........+....   ..  ..|+++|+||+|+
T Consensus        98 ~~i~liDTPG~~df~---~~~~~~l~------~aD~ailVvDa~~g-~~~qt~~~~~~~~---~~--~~p~ilviNK~D~  162 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS---SEVTAALR------VTDGALVVVDTIEG-VCVQTETVLRQAL---GE--RIKPVVVINKVDR  162 (842)
T ss_dssp             EEEEEECCCCCCSSC---HHHHHHHH------TCSEEEEEEETTTB-SCHHHHHHHHHHH---HT--TCEEEEEEECHHH
T ss_pred             ceEEEEECcCchhhH---HHHHHHHH------hCCEEEEEEeCCCC-CCHHHHHHHHHHH---Hc--CCCeEEEEECCCc
Confidence            689999999997643   34444443      89999999877542 2333333222222   22  2689999999998


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       163 ~  163 (842)
T 1n0u_A          163 A  163 (842)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.18  E-value=4.6e-10  Score=104.65  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=70.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----cc------C------CCCCCCeeEEEEeeeCC-------eEEEEEe
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VS------T------FQSEGPRPVMVSRSRAG-------FTLNIVD   93 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~------~------~~~~t~~~~~~~~~~~~-------~~~~viD   93 (243)
                      +..+|+++|..|+|||||+++|+......     +.      +      ....|.........+.+       ..+.|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            46899999999999999999997532100     00      0      01112222223344555       7899999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        94 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      |||..+.   ..++...++      .+|++|+|++.... ........+.....     ...|+++|+||+|+.
T Consensus        89 TPG~~df---~~~~~~~l~------~aD~aIlVvDa~~g-v~~qt~~~~~~~~~-----~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           89 TPGHVDF---TIEVERSMR------VLDGAVMVYCAVGG-VQPQSETVWRQANK-----YKVPRIAFVNKMDRM  147 (704)
T ss_pred             CCCccch---HHHHHHHHH------HCCEEEEEEeCCCC-CcHHHHHHHHHHHH-----cCCCEEEEEeCCCcc
Confidence            9999653   223333333      78999999776532 22222223322221     136999999999985

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.18  E-value=1.2e-10  Score=106.51  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=70.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCe--eEEEEee----------------eCCeEEEEEeCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR--PVMVSRS----------------RAGFTLNIVDTPGLIE   99 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~--~~~~~~~----------------~~~~~~~viDTPG~~~   99 (243)
                      ++.+|+++|.+++|||||+++|++..+..... .+.|.+  .......                +....+.+|||||+.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            56899999999999999999999765321111 112221  1111110                1112599999999976


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ......       ++  ...+|++++|++++. .........+..+..     ...|+++|+||+|+.
T Consensus        83 F~~~~~-------r~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~-----~~vPiIVViNKiDl~  135 (594)
T 1g7s_A           83 FTTLRK-------RG--GALADLAILIVDINE-GFKPQTQEALNILRM-----YRTPFVVAANKIDRI  135 (594)
T ss_dssp             CTTSBC-------SS--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHH-----TTCCEEEEEECGGGS
T ss_pred             HHHHHH-------HH--HhhCCEEEEEEECCC-CccHhHHHHHHHHHH-----cCCeEEEEecccccc
Confidence            643322       11  147899999988764 233444444444433     236999999999985

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.17  E-value=1.4e-10  Score=111.51  Aligned_cols=117  Identities=13%  Similarity=0.051  Sum_probs=72.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc---------cc------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT---------VS------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~---------~~------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ....++|+++|..++|||||+++|++.....         ..      ...+.|...........+..+.+|||||+.+ 
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-  371 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-  371 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-
Confidence            3467999999999999999999998741100         00      0111122211223344678999999999842 


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~  167 (243)
                            ....+...+  ..+|++|+|++++.. ........+..+.. .+    .| +|+|+||+|+.
T Consensus       372 ------F~~~mi~ga--s~AD~aILVVDAtdG-v~~QTrEhL~ll~~-lg----IP~IIVVINKiDLv  425 (1289)
T 3avx_A          372 ------YVKNMITGA--AQMDGAILVVAATDG-PMPQTREHILLGRQ-VG----VPYIIVFLNKCDMV  425 (1289)
T ss_dssp             ------HHHHHHHTS--CCCSEEEEEEETTTC-SCTTHHHHHHHHHH-HT----CSCEEEEEECCTTC
T ss_pred             ------HHHHHHHHH--hhCCEEEEEEcCCcc-CcHHHHHHHHHHHH-cC----CCeEEEEEeecccc
Confidence                  222333322  589999999887643 23334445544443 22    46 89999999985

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.16  E-value=1.1e-10  Score=106.61  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc--------cC------CCCCCCeeEEEEeeeC-----CeEEEEEeCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLI   98 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~--------~~------~~~~t~~~~~~~~~~~-----~~~~~viDTPG~~   98 (243)
                      .-.+|+++|..++|||||+++|+.......        .+      ..+.|.........+.     +..+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            357999999999999999999986321100        00      0111222222233332     3579999999995


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.   ..++.+.++      .+|++|+|+++......+....+. ....   .  ..|+++|+||+|+.
T Consensus        83 dF---~~ev~~~l~------~aD~aILVVDa~~gv~~qt~~~~~-~~~~---~--~ipiIvViNKiDl~  136 (599)
T 3cb4_D           83 DF---SYEVSRSLA------ACEGALLVVDAGQGVEAQTLANCY-TAME---M--DLEVVPVLNKIDLP  136 (599)
T ss_dssp             GG---HHHHHHHHH------HCSEEEEEEETTTCCCTHHHHHHH-HHHH---T--TCEEEEEEECTTST
T ss_pred             HH---HHHHHHHHH------HCCEEEEEEECCCCCCHHHHHHHH-HHHH---C--CCCEEEeeeccCcc
Confidence            43   223333333      789999998775422222222222 2221   1  26899999999985

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.15  E-value=1.5e-10  Score=105.74  Aligned_cols=115  Identities=13%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc--------cC------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLI   98 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~--------~~------~~~~t~~~~~~~~~~---~~--~~~~viDTPG~~   98 (243)
                      .-.+|+++|..++|||||+++|++......        .+      ..+.|.........+   ++  ..+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            357999999999999999999985321000        00      011122111122222   22  578899999996


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.   ..++.+.+      ..+|++|+|+++... ........+....   ..  ..|+++|+||+|+.
T Consensus        85 dF---~~ev~r~l------~~aD~aILVVDa~~g-v~~qt~~~~~~a~---~~--~ipiIvviNKiDl~  138 (600)
T 2ywe_A           85 DF---SYEVSRAL------AACEGALLLIDASQG-IEAQTVANFWKAV---EQ--DLVIIPVINKIDLP  138 (600)
T ss_dssp             GG---HHHHHHHH------HTCSEEEEEEETTTB-CCHHHHHHHHHHH---HT--TCEEEEEEECTTST
T ss_pred             hH---HHHHHHHH------HhCCEEEEEEECCCC-ccHHHHHHHHHHH---HC--CCCEEEEEeccCcc
Confidence            53   22333333      388999999777542 2222222222222   11  36899999999985

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.14  E-value=5e-10  Score=98.00  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccC---CCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCc---HHH--
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVN---YHA--  107 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~---~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~---~~~--  107 (243)
                      ..++++++|++|+|||||+|.|+|..+.....   .+..+.....+.....+  ..+.++||||++......   ..+  
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            34679999999999999999999985321111   11111111122222222  268999999997532110   011  


Q ss_pred             --HHHHHHHHhc-------------CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          108 --IQLIKRFLLN-------------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       108 --~~~~~~~~~~-------------~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ...+..++..             ..+|++++++......+...+..+++.+.    .  ..|+|+|+||+|..
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~--~~~vI~Vi~KtD~L  189 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----S--KVNIIPIIAKADAI  189 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----S--CSEEEEEESCGGGS
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----h--CCCEEEEEcchhcc
Confidence              1111122210             12355454422222236677766655554    1  36999999999986

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.13  E-value=3e-11  Score=99.28  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=31.4

Q ss_pred             CCcEEEEEEeCCCc--ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++|++++|++++..  ...+....++..+.+.... ...|+++|+||+|+.
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~  211 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEG  211 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence            58999999888653  2222334566666554221 136999999999985

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.11  E-value=1e-10  Score=101.46  Aligned_cols=87  Identities=24%  Similarity=0.271  Sum_probs=49.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE   99 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~   99 (243)
                      ...++|+++|.+|+|||||+|+|++... .++.+|.+|..+......+.+                 ..+.+|||||+..
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            4678999999999999999999999875 566677777665555444433                 3599999999976


Q ss_pred             CCCCc----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113          100 GGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus       100 ~~~~~----~~~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                      .....    ..+...++      ++|++++|++..
T Consensus        99 ~as~~~glg~~~l~~ir------~aD~Il~VvD~~  127 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHIS------ACDGIFHLTRAF  127 (396)
T ss_dssp             --------CCHHHHHHH------TSSSEEEEEEC-
T ss_pred             ccchhhHHHHHHHHHHH------hcCeEEEEEecC
Confidence            44321    12333343      899999997763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.07  E-value=2.2e-10  Score=98.65  Aligned_cols=121  Identities=18%  Similarity=0.278  Sum_probs=68.8

Q ss_pred             HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCCCe-----------------eEEEE
Q 026113           25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEGPR-----------------PVMVS   81 (243)
Q Consensus        25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t~~-----------------~~~~~   81 (243)
                      ....+..+.+......+|+++|.+|+|||||++.|.      |.++......+..+..                 .....
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i  144 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYI  144 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEE
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeE
Confidence            334455554444577899999999999999999986      3333222111111110                 00000


Q ss_pred             ----------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHH
Q 026113           82 ----------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK  139 (243)
Q Consensus        82 ----------------------~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~  139 (243)
                                            ....+..+.||||||+...   .   ...+      ..+|++++|++....   +...
T Consensus       145 ~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~---~~~~------~~aD~vl~V~d~~~~---~~~~  209 (355)
T 3p32_A          145 RPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS---E---VAVA------NMVDTFVLLTLARTG---DQLQ  209 (355)
T ss_dssp             ECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH---H---HHHH------TTCSEEEEEEESSTT---CTTT
T ss_pred             EECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---H---HHHH------HhCCEEEEEECCCCC---ccHH
Confidence                                  0225678999999997431   1   1111      589999999765421   1111


Q ss_pred             HHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          140 QITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       140 ~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                          .+....   ...|.++|+||+|+.
T Consensus       210 ----~l~~~~---~~~p~ivVlNK~Dl~  230 (355)
T 3p32_A          210 ----GIKKGV---LELADIVVVNKADGE  230 (355)
T ss_dssp             ----TCCTTS---GGGCSEEEEECCCGG
T ss_pred             ----HHHHhH---hhcCCEEEEECCCCc
Confidence                111111   125899999999984

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.07  E-value=2.8e-09  Score=98.78  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      ...+|+++|.+|+|||||++.|++.....     +      .+      ....+.........+.+..+.+|||||+.+.
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            45799999999999999999999432110     0      00      0122333444555667889999999998542


Q ss_pred             CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ..+....++      .+|++++|+++.. ........++..+...     ..|+++|+||+|+.
T Consensus        88 ---~~~~~~~l~------~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 ---VGEIRGALE------AADAALVAVSAEA-GVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  139 (665)
T ss_dssp             ---HHHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             ---HHHHHHHHh------hcCcEEEEEcCCc-ccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence               223333333      7899999977643 2444444444444432     26999999999984

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.06  E-value=4.1e-10  Score=97.14  Aligned_cols=84  Identities=18%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---------------------CCeEEEEEeCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------AGFTLNIVDTPGLI   98 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~viDTPG~~   98 (243)
                      ++|+++|.+|+|||||+|+|++.. +.+..++.+|..+......+                     .+..+.+|||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            579999999999999999999875 34555555555444333322                     24579999999997


Q ss_pred             CCCC----CcHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113           99 EGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRLD  130 (243)
Q Consensus        99 ~~~~----~~~~~~~~~~~~~~~~~~~~il~v~~~d  130 (243)
                      ....    ....+...++      .+|++++|++..
T Consensus        81 ~~a~~~~~lg~~fl~~ir------~ad~ii~VvD~~  110 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIR------EVAAIAHVLRCF  110 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHH------TCSEEEEEEECC
T ss_pred             ccccccchHHHHHHHHHH------hCCEEEEEEECC
Confidence            6532    2334444444      899999998774

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.03  E-value=4.8e-10  Score=97.35  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE   99 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~   99 (243)
                      ....++.++|.+|+|||||+|+|+|...+.++.+|.+|..+......+.+                 ..+.+|||||+..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            35689999999999999999999998765777888888777766666655                 4689999999875


Q ss_pred             CCCC----cHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113          100 GGYV----NYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus       100 ~~~~----~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      ....    ...+...+      .++|++++|++.
T Consensus        98 ~~s~~e~L~~~fl~~i------r~~d~il~Vvd~  125 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHV------RAVDAIYQVVRA  125 (392)
T ss_dssp             CCCSSSSSCHHHHHHH------TTCSEEEEEEEC
T ss_pred             CCcHHHHHHHHHHHHH------HHHHHHHHHHhc
Confidence            4332    22333333      489999999776

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.02  E-value=1.2e-09  Score=93.43  Aligned_cols=118  Identities=21%  Similarity=0.182  Sum_probs=66.1

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCCC--------------------eeEEEE
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQSEGP--------------------RPVMVS   81 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg------~~~~~~~~~~~~t~--------------------~~~~~~   81 (243)
                      .+..+.....+...|+++|.+|+||||++|.|++      .++......+..+.                    .+....
T Consensus        45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~  124 (341)
T 2p67_A           45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPV  124 (341)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEE
T ss_pred             HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecC
Confidence            3444433334678999999999999999999963      33322222121111                    000000


Q ss_pred             -------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHH
Q 026113           82 -------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT  142 (243)
Q Consensus        82 -------------------~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l  142 (243)
                                         ..+.+.++.+|||||+.+..   .    .+.     ..+|++++|++....   + ..+.+
T Consensus       125 ~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---~----~~~-----~~aD~vl~Vvd~~~~---~-~~~~l  188 (341)
T 2p67_A          125 PSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---T----EVA-----RMVDCFISLQIAGGG---D-DLQGI  188 (341)
T ss_dssp             CC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---H----HHH-----TTCSEEEEEECC----------CCC
T ss_pred             ccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH---H----HHH-----HhCCEEEEEEeCCcc---H-HHHHH
Confidence                               01457789999999986421   1    111     589999999665321   1 10111


Q ss_pred             HHHHHHhcccccccEEEEEeCCCCC
Q 026113          143 RAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       143 ~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..  ...    ..|.++|+||+|+.
T Consensus       189 ~~--~~~----~~p~ivv~NK~Dl~  207 (341)
T 2p67_A          189 KK--GLM----EVADLIVINKDDGD  207 (341)
T ss_dssp             CH--HHH----HHCSEEEECCCCTT
T ss_pred             HH--hhh----cccCEEEEECCCCC
Confidence            10  111    25889999999985

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.00  E-value=6e-09  Score=94.45  Aligned_cols=124  Identities=11%  Similarity=0.086  Sum_probs=77.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc---------------cccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAV---------------TVST------FQSEGPRPVMVSRSRAGFTLNIVDTPG   96 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~---------------~~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG   96 (243)
                      +.-+|.++|..++|||||..+|+-..-.               .+.+      ..+.|.........|.+..+.||||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            3579999999999999999999722100               0111      112233334556788999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113           97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                      ..|.   ..++.+.++      -+|..|+|++... -. +.....+.......    ..|.++++||+|..   ..++..
T Consensus       110 HvDF---~~Ev~raL~------~~DgAvlVvda~~-GV-~~qT~~v~~~a~~~----~lp~i~fINK~Dr~---~ad~~~  171 (548)
T 3vqt_A          110 HQDF---SEDTYRVLT------AVDSALVVIDAAK-GV-EAQTRKLMDVCRMR----ATPVMTFVNKMDRE---ALHPLD  171 (548)
T ss_dssp             GGGC---SHHHHHHHH------SCSEEEEEEETTT-BS-CHHHHHHHHHHHHT----TCCEEEEEECTTSC---CCCHHH
T ss_pred             cHHH---HHHHHHHHH------hcCceEEEeecCC-Cc-ccccHHHHHHHHHh----CCceEEEEecccch---hcchhH
Confidence            9765   345555665      8899999966543 12 22322222222222    26999999999973   335555


Q ss_pred             HHH
Q 026113          177 FCS  179 (243)
Q Consensus       177 ~~~  179 (243)
                      .+.
T Consensus       172 ~~~  174 (548)
T 3vqt_A          172 VMA  174 (548)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.97  E-value=1.4e-09  Score=93.29  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ....|+++|.+|||||||+|.|++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999999999996

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.96  E-value=2.7e-09  Score=97.10  Aligned_cols=66  Identities=21%  Similarity=0.206  Sum_probs=45.5

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-------eeCCeEEEEEeCCCCCCCCC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-------SRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~viDTPG~~~~~~  102 (243)
                      ......+|+++|.+|+|||||+|+|+|.....  ..++++..++....       ...+..+.++||||+.+...
T Consensus        34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~  106 (592)
T 1f5n_A           34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK  106 (592)
T ss_dssp             CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccc
Confidence            34467899999999999999999999987532  22222222221111       12567899999999987543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.91  E-value=1.2e-09  Score=90.03  Aligned_cols=60  Identities=25%  Similarity=0.374  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      ++++++|.+|+|||||+|+|++.....++..+++|.......   .+..+.+|||||+.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccCcC
Confidence            699999999999999999999988656666666555443222   245789999999987765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.90  E-value=1e-08  Score=91.71  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCC-C-----------eeEEEE-----------------e
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG-P-----------RPVMVS-----------------R   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t-~-----------~~~~~~-----------------~   82 (243)
                      ++..|+++|.+|+||||+++.|.      |.++..+..-+... .           ....+.                 .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999      77654332211000 0           000011                 0


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEE
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVL  161 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~  161 (243)
                      .+.+..+.||||||....   +......+........+|.+++|++...  . .......+.+.+.      .| .++|+
T Consensus       180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~i~pd~vllVvDa~~--g-~~~~~~a~~~~~~------~~i~gvVl  247 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANAIQPDNIVYVMDASI--G-QACEAQAKAFKDK------VDVASVIV  247 (504)
T ss_dssp             HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHHHCCSEEEEEEETTC--C-TTHHHHHHHHHHH------HCCCCEEE
T ss_pred             HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhhhcCceEEEEEeccc--c-ccHHHHHHHHHhh------cCceEEEE
Confidence            125678999999998643   2233333332221127899999966543  1 2233333333332      36 49999


Q ss_pred             eCCCCC
Q 026113          162 THAQLS  167 (243)
Q Consensus       162 tk~D~~  167 (243)
                      ||+|..
T Consensus       248 NK~D~~  253 (504)
T 2j37_W          248 TKLDGH  253 (504)
T ss_dssp             ECTTSC
T ss_pred             eCCccc
Confidence            999975

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.86  E-value=3.4e-09  Score=84.51  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...+|+++|.+|+|||||+|.|++.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.82  E-value=4.6e-09  Score=89.68  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .++.+.-.-.+...+.++|.+|+|||||+|.|+|
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4444443334567899999999999999999983

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.70  E-value=2.1e-07  Score=85.37  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=28.2

Q ss_pred             HHHHHHhhhhcCC----CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           25 LLELLGKLKQENV----NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        25 l~~~~~~~~~~~~----~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.+.+..++..+.    .-..|+++|++|||||||++.|.|..
T Consensus        27 ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           27 CIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             HHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence            4444555554432    22359999999999999999999974

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.70  E-value=8.8e-09  Score=84.31  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=26.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh-----CCCccccc
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSII-----GEKAVTVS   68 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~ll-----g~~~~~~~   68 (243)
                      +.....++++|..|+||||+++.|.     |.++..+.
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd   48 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN   48 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence            3467889999999999999999998     77654443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.69  E-value=1.5e-07  Score=82.66  Aligned_cols=119  Identities=19%  Similarity=0.137  Sum_probs=69.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCC------------CeeEEEE-----------------e
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG------------PRPVMVS-----------------R   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t------------~~~~~~~-----------------~   82 (243)
                      ++..|+++|.+|+||||+++.|.      |.++..+..-+...            .....+.                 .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46899999999999999998887      44432221100000            0000000                 0


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      ...+..+.||||||...   .+.....+++.......+|.+++|++..  . ........+.+.+..     ....+|+|
T Consensus       179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVvDA~--~-gq~a~~~a~~f~~~~-----~i~gVIlT  247 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVIDGT--I-GQQAYNQALAFKEAT-----PIGSIIVT  247 (443)
T ss_dssp             HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGHHHHHHHHHHSC-----TTEEEEEE
T ss_pred             HhCCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEEeCC--C-chhHHHHHHHHHhhC-----CCeEEEEE
Confidence            01346899999999853   3444555555544345789999995543  2 233333444444322     46789999


Q ss_pred             CCCCC
Q 026113          163 HAQLS  167 (243)
Q Consensus       163 k~D~~  167 (243)
                      |+|..
T Consensus       248 KlD~~  252 (443)
T 3dm5_A          248 KLDGS  252 (443)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            99874

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.69  E-value=2.6e-07  Score=86.30  Aligned_cols=122  Identities=13%  Similarity=0.147  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc-----ccc------C------CCCCCCeeEEEEeeeC-------CeEEEEEeCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAV-----TVS------T------FQSEGPRPVMVSRSRA-------GFTLNIVDTP   95 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~-----~~~------~------~~~~t~~~~~~~~~~~-------~~~~~viDTP   95 (243)
                      -+|.++|..++|||||..+|+-..-.     .+.      +      ..+.|.........|.       +..+.+||||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            58999999999999999998732110     000      0      0111222222333332       4689999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113           96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus        96 G~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      |..|.   ..++.+.++      -+|+.|+|++... -....-...++...+   .+  .|.++++||+|..   ..++.
T Consensus        94 GHvDF---~~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~---~~--lp~i~~iNKiDr~---~a~~~  155 (709)
T 4fn5_A           94 GHVDF---TIEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANK---YG--VPRIVYVNKMDRQ---GANFL  155 (709)
T ss_dssp             SCTTC---HHHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHH---HT--CCEEEEEECSSST---TCCHH
T ss_pred             CCccc---HHHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHH---cC--CCeEEEEcccccc---CccHH
Confidence            99765   345555555      6799999966543 132322333333222   22  6999999999974   33455


Q ss_pred             HHHH
Q 026113          176 VFCS  179 (243)
Q Consensus       176 ~~~~  179 (243)
                      ..++
T Consensus       156 ~~~~  159 (709)
T 4fn5_A          156 RVVE  159 (709)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.60  E-value=3.8e-07  Score=77.28  Aligned_cols=78  Identities=9%  Similarity=0.078  Sum_probs=48.0

Q ss_pred             EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCCcEEEEEEeCC-------CcccChhHHHHHHHHHHHhcc
Q 026113           80 VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTIDVLLYVDRLD-------VYRVDNLDKQITRAITDNFGE  151 (243)
Q Consensus        80 ~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~d-------~~~~~~~~~~~l~~l~~~~~~  151 (243)
                      ......+..+.+|||+|+.        ..+.+ ..|+  .+++++|+|+++.       .....+.-..++.++......
T Consensus       160 ~~~~~~~v~l~iwDtgGQe--------~~R~~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~  229 (327)
T 3ohm_A          160 YPFDLQSVIFRMVDVGGQR--------SERRKWIHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY  229 (327)
T ss_dssp             EEEEETTEEEEEEEECCSH--------HHHTTGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred             EEEEeeceeeEEEEcCCch--------hHHHHHHHHh--CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence            3445678899999999993        11111 1222  5899999998664       111122233445555555432


Q ss_pred             c--ccccEEEEEeCCCCC
Q 026113          152 Q--IWKRALIVLTHAQLS  167 (243)
Q Consensus       152 ~--~~~~~ivV~tk~D~~  167 (243)
                      .  ...|+++++||+|+.
T Consensus       230 ~~~~~~~iiL~~NK~DL~  247 (327)
T 3ohm_A          230 PWFQNSSVILFLNKKDLL  247 (327)
T ss_dssp             GGGTTCEEEEEEECHHHH
T ss_pred             hccCCceEEEEEECchhh
Confidence            1  236899999999984

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.60  E-value=3.4e-08  Score=91.17  Aligned_cols=113  Identities=15%  Similarity=0.210  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc-----ccc------CC------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAV-----TVS------TF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~-----~~~------~~------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      -+|.++|..++|||||..+|+...-.     .+.      +.      .+.|.........|.+..+.++||||..|.  
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST--
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH--
Confidence            47899999999999999998722100     011      10      012223334456788899999999999764  


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..++.+.+      .-+|+.|+|++... -....-...++...+ .+    .|.++++||+|..
T Consensus        81 -~~Ev~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~-~~----lp~i~~INKmDr~  132 (638)
T 3j25_A           81 -LAEVYRSL------SVLDGAILLISAKD-GVQAQTRILFHALRK-MG----IPTIFFINKIDQN  132 (638)
T ss_dssp             -HHHHHHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHH-HT----CSCEECCEECCSS
T ss_pred             -HHHHHHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHH-cC----CCeEEEEeccccc
Confidence             33444444      38899999976643 122222223333222 22    5889999999974

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.59  E-value=3.3e-07  Score=80.08  Aligned_cols=117  Identities=19%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC----CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF----QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR  113 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~  113 (243)
                      ....++++|++|+|||||+|.|+|......+..    ...+........ .....+.++|+||++.....   ..+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~---~~~~L~~  143 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFP---PDTYLEK  143 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCC---HHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHH---HHHHHHH
Confidence            456899999999999999999999542211111    111111122221 11236899999998643222   2222322


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .- -...+.+++ ++..  +.......+...+...     .+|+++|.||.|+.
T Consensus       144 ~~-L~~~~~~~~-lS~G--~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll  188 (413)
T 1tq4_A          144 MK-FYEYDFFII-ISAT--RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD  188 (413)
T ss_dssp             TT-GGGCSEEEE-EESS--CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred             cC-CCccCCeEE-eCCC--CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence            11 123355554 3443  2344455555555542     26999999998763

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.57  E-value=1.2e-07  Score=83.44  Aligned_cols=120  Identities=18%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCC----------------------CC--CCCeeE----EEEee
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTF----------------------QS--EGPRPV----MVSRS   83 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~~~----------------------~~--~t~~~~----~~~~~   83 (243)
                      .+..|+++|.+|+||||+++.|.+.      ++..+..-                      +.  .+.++.    .....
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998863      22211110                      00  111110    00001


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113           84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus        84 ~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      ..+..+.||||||...   .+......+........+|.+++|++...  . .......    +.|.........+|+||
T Consensus       178 ~~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~--g-~~~~~~~----~~~~~~~~~i~gvVlnK  247 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTI--G-QQAGIQA----KAFKEAVGEIGSIIVTK  247 (432)
T ss_dssp             TSSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGG--G-GGHHHHH----HHHHTTSCSCEEEEEEC
T ss_pred             hhCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeeccc--c-HHHHHHH----HHHhhcccCCeEEEEeC
Confidence            2566899999999853   24444555544333347899999955432  1 1222222    22332110238999999


Q ss_pred             CCCC
Q 026113          164 AQLS  167 (243)
Q Consensus       164 ~D~~  167 (243)
                      +|..
T Consensus       248 ~D~~  251 (432)
T 2v3c_C          248 LDGS  251 (432)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            9974

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.55  E-value=2.2e-07  Score=79.64  Aligned_cols=77  Identities=9%  Similarity=0.095  Sum_probs=47.2

Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ChhHHHHHHHHHHHhcc--c
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-------DNLDKQITRAITDNFGE--Q  152 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~-------~~~~~~~l~~l~~~~~~--~  152 (243)
                      ....+..+.+|||+|+...+.   .+    ..|+  .++++||+|++++....       ...-..+..++......  -
T Consensus       188 ~~~~~~~l~iwDt~GQe~~r~---~w----~~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          188 FTFKDLHFKMFDVGGQRSERK---KW----IHCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             EEETTEEEEEEEECCSGGGGG---GG----GGGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             EeeCCeeEEEEeCCCchhhhH---HH----HHHH--hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            445678899999999843221   11    1122  58999999988764210       12233344444444331  1


Q ss_pred             ccccEEEEEeCCCCC
Q 026113          153 IWKRALIVLTHAQLS  167 (243)
Q Consensus       153 ~~~~~ivV~tk~D~~  167 (243)
                      ...|+++|+||+|+.
T Consensus       259 ~~~piiLv~NK~DL~  273 (353)
T 1cip_A          259 TDTSIILFLNKKDLF  273 (353)
T ss_dssp             TTSEEEEEEECHHHH
T ss_pred             cCCcEEEEEECcCch
Confidence            236899999999984

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.54  E-value=8.3e-07  Score=75.54  Aligned_cols=77  Identities=16%  Similarity=0.202  Sum_probs=46.7

Q ss_pred             EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCCcEEEEEEeCCCc-------ccChhHHHHHHHHHHHhccc
Q 026113           81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTIDVLLYVDRLDVY-------RVDNLDKQITRAITDNFGEQ  152 (243)
Q Consensus        81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~d~~-------~~~~~~~~~l~~l~~~~~~~  152 (243)
                      .....+..+.+|||+|+        +..+.+ ..|+  .+++++|+|+++...       ...+.-..++.++.......
T Consensus       155 ~~~~~~v~l~iwDtaGQ--------e~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQ--------RSERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             EEESSSCEEEEEECCSC--------HHHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             EEEeeeeeeccccCCCc--------ccccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            34556788999999999        222222 2233  699999999887510       01122233344444443211


Q ss_pred             --ccccEEEEEeCCCCC
Q 026113          153 --IWKRALIVLTHAQLS  167 (243)
Q Consensus       153 --~~~~~ivV~tk~D~~  167 (243)
                        ...|+++++||+|+.
T Consensus       225 ~~~~~piiLv~NK~DL~  241 (340)
T 4fid_A          225 FLKGAVKLIFLNKMDLF  241 (340)
T ss_dssp             GGTTSEEEEEEECHHHH
T ss_pred             ccCCCeEEEEEECchhh
Confidence              236899999999984

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.42  E-value=6e-07  Score=78.83  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=67.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCC--------------CCCCeeEEE---------------Ee
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQ--------------SEGPRPVMV---------------SR   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~--------------~~t~~~~~~---------------~~   82 (243)
                      ++..|+++|.+|+||||++..|.      |.++..+..-.              .........               ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46789999999999999999887      44332211000              000000000               00


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      ...+..+.++||||..... .+.....++........++.+++|++..  . .+......+.+.+..     .+..+|+|
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~--~-gq~a~~~a~~f~~~~-----~~~gVIlT  246 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDAS--I-GQKAYDLASRFHQAS-----PIGSVIIT  246 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGGHHHHHHHHHHC-----SSEEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCc--c-chHHHHHHHHHhccc-----CCcEEEEe
Confidence            1135679999999974310 2333444444433223678999995443  2 233334444444432     46889999


Q ss_pred             CCCCC
Q 026113          163 HAQLS  167 (243)
Q Consensus       163 k~D~~  167 (243)
                      |+|..
T Consensus       247 KlD~~  251 (433)
T 3kl4_A          247 KMDGT  251 (433)
T ss_dssp             CGGGC
T ss_pred             ccccc
Confidence            99863

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.16  E-value=7.6e-06  Score=72.07  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+-.-|.|+|++++|||+|+|.|+|.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34567889999999999999999964

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.13  E-value=2e-05  Score=65.91  Aligned_cols=120  Identities=18%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCC--C----------eeEEEE-----------------ee
Q 026113           39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG--P----------RPVMVS-----------------RS   83 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t--~----------~~~~~~-----------------~~   83 (243)
                      +-.|+++|.+|+||||+++.|.      |.++.....-....  .          ......                 ..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            4578899999999999998887      33332211110000  0          000000                 01


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113           84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  163 (243)
Q Consensus        84 ~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk  163 (243)
                      ..+..+.++||||..... .++....+++.......+|.+++|++..  .. ......++.+.+    .. ....+|+||
T Consensus       178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~--~g-~~~~~~~~~~~~----~~-~i~gvVlnk  248 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDAS--IG-QKAYDLASKFNQ----AS-KIGTIIITK  248 (297)
T ss_dssp             HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGG--GG-GGHHHHHHHHHH----TC-TTEEEEEEC
T ss_pred             hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCC--ch-HHHHHHHHHHHh----hC-CCCEEEEeC
Confidence            145679999999986410 2223333333222223788999995553  21 222333333322    21 238899999


Q ss_pred             CCCC
Q 026113          164 AQLS  167 (243)
Q Consensus       164 ~D~~  167 (243)
                      +|..
T Consensus       249 ~D~~  252 (297)
T 1j8m_F          249 MDGT  252 (297)
T ss_dssp             GGGC
T ss_pred             CCCC
Confidence            9964

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.09  E-value=9.9e-06  Score=71.23  Aligned_cols=119  Identities=19%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh-------CCCcccccCCCCCCC--e----------eEEEE-----------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII-------GEKAVTVSTFQSEGP--R----------PVMVS-----------------   81 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll-------g~~~~~~~~~~~~t~--~----------~~~~~-----------------   81 (243)
                      .+..|+++|.+|+||||++..|.       |.++..+..-+....  .          .....                 
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999998887       655432221110000  0          00000                 


Q ss_pred             eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEE
Q 026113           82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  161 (243)
Q Consensus        82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  161 (243)
                      ....+..+.||||||....   +......+........++.+++|++..  .. .......+.    |.... ...-+|+
T Consensus       179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~--~g-~~~~~~~~~----f~~~l-~i~gvVl  247 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAM--TG-QDAANTAKA----FNEAL-PLTGVVL  247 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETT--BC-TTHHHHHHH----HHHHS-CCCCEEE
T ss_pred             HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecc--hh-HHHHHHHHH----HhccC-CCeEEEE
Confidence            0114668999999997532   233344444332224789999996654  22 222223332    32222 2255799


Q ss_pred             eCCCCC
Q 026113          162 THAQLS  167 (243)
Q Consensus       162 tk~D~~  167 (243)
                      ||+|..
T Consensus       248 nK~D~~  253 (433)
T 2xxa_A          248 TKVDGD  253 (433)
T ss_dssp             ECTTSS
T ss_pred             ecCCCC
Confidence            999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.98  E-value=2.3e-05  Score=66.47  Aligned_cols=119  Identities=20%  Similarity=0.261  Sum_probs=63.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------ccccc-CCCCCCC----------eeEEEEe------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK------AVTVS-TFQSEGP----------RPVMVSR------------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~------~~~~~-~~~~~t~----------~~~~~~~------------------   82 (243)
                      ++--++++|.+|+||||+++.|.+.-      +.... +......          .......                  
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            56789999999999999999988642      11110 0000000          0000000                  


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      ...+..+.++||+|........-..+..+.+.+   .+|-.+++.+..  . .......++.+.+..     ...++++|
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~--t-~~~~~~~~~~~~~~~-----~it~iilT  276 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDAL--A-GNAIVEQARQFNEAV-----KIDGIILT  276 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGG--G-TTHHHHHHHHHHHHS-----CCCEEEEE
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecH--H-HHHHHHHHHHHHHhc-----CCCEEEEe
Confidence            012446788999998543322222222233333   578888885432  2 233333444444332     35689999


Q ss_pred             CCCCC
Q 026113          163 HAQLS  167 (243)
Q Consensus       163 k~D~~  167 (243)
                      |.|..
T Consensus       277 KlD~~  281 (328)
T 3e70_C          277 KLDAD  281 (328)
T ss_dssp             CGGGC
T ss_pred             CcCCc
Confidence            99863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.95  E-value=8.1e-05  Score=62.36  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------ccccc-CCCCCC------------CeeEEEEe----------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK------AVTVS-TFQSEG------------PRPVMVSR----------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~------~~~~~-~~~~~t------------~~~~~~~~----------------   82 (243)
                      ++-.|+++|++|+||||+++.|.+.-      +.... +.....            .-....+.                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            35688999999999999999988431      11110 000000            00001000                


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHH---hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLI---KRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR  156 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~---~~~~---~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~  156 (243)
                      ...+..+.++||+|.....   ......+   +..+   ....|+.++++.+..  . .......+..+.+..     ..
T Consensus       181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~--t-~~~~~~~~~~~~~~~-----~~  249 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAV--T-GQNGLEQAKKFHEAV-----GL  249 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT--B-CTHHHHHHHHHHHHH-----CC
T ss_pred             HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHH--H-HHHHHHHHHHHHHHc-----CC
Confidence            0124457899999985432   2222222   2221   124688888885443  2 233444444454433     35


Q ss_pred             EEEEEeCCCCC
Q 026113          157 ALIVLTHAQLS  167 (243)
Q Consensus       157 ~ivV~tk~D~~  167 (243)
                      .++++||.|..
T Consensus       250 t~iivTh~d~~  260 (304)
T 1rj9_A          250 TGVIVTKLDGT  260 (304)
T ss_dssp             SEEEEECTTSS
T ss_pred             cEEEEECCccc
Confidence            78999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.91  E-value=5.4e-05  Score=67.29  Aligned_cols=119  Identities=17%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------Ccccc-cCCCCC-------C---C--eeEEEEe----------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTV-STFQSE-------G---P--RPVMVSR----------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~-~~~~~~-------t---~--~~~~~~~----------------   82 (243)
                      .+-.|+++|.+|+|||||++.|.|.      .+... .+....       .   .  -......                
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            3457899999999999999998853      21111 110000       0   0  0000000                


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h---cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc
Q 026113           83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---L---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR  156 (243)
Q Consensus        83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~---~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~  156 (243)
                      ...+..+.++||+|....   +......+.+..   .   ...++-+|+|++..   ........++.+.+.++     .
T Consensus       372 ~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat---tGq~al~~ak~f~~~~~-----i  440 (503)
T 2yhs_A          372 KARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS---TGQNAVSQAKLFHEAVG-----L  440 (503)
T ss_dssp             HHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG---GTHHHHHHHHHHHHHTC-----C
T ss_pred             HhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc---ccHHHHHHHHHHHhhcC-----C
Confidence            013557899999998533   223333333321   1   13477888884432   22333444555554432     4


Q ss_pred             EEEEEeCCCCC
Q 026113          157 ALIVLTHAQLS  167 (243)
Q Consensus       157 ~ivV~tk~D~~  167 (243)
                      ..+|+||.|..
T Consensus       441 tgvIlTKLD~t  451 (503)
T 2yhs_A          441 TGITLTKLDGT  451 (503)
T ss_dssp             SEEEEECGGGC
T ss_pred             CEEEEEcCCCc
Confidence            67899999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.82  E-value=6e-06  Score=69.31  Aligned_cols=58  Identities=26%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEG  100 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~viDTPG~~~~  100 (243)
                      .-.++++|.+|+|||||+|.|+|......+...       .+|......  ...  ...++||||+...
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HTS--GGLVADTPGFSSL  237 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EET--TEEEESSCSCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hcC--CEEEecCCCcccc
Confidence            348899999999999999999987543333222       122211111  111  2478999998653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.75  E-value=1.7e-05  Score=66.31  Aligned_cols=119  Identities=15%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC-------CcccccCCC-CCCC-------------eeEEEE---------eeeCCe
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE-------KAVTVSTFQ-SEGP-------------RPVMVS---------RSRAGF   87 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~-------~~~~~~~~~-~~t~-------------~~~~~~---------~~~~~~   87 (243)
                      ++-.|+++|.+|+||||++..|.+.       .+.....-+ ..+.             ......         ....+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            4568999999999999999887632       221111100 0000             000000         012455


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.|+||||...   ........+.+.+....++.+++|++...   ..   ..+..+.+.|..  ....-+|+||.|..
T Consensus       184 dlvIiDT~G~~~---~~~~~~~el~~~l~~~~~~~~~lVl~at~---~~---~~~~~~~~~~~~--l~~~giVltk~D~~  252 (296)
T 2px0_A          184 DHVFVDTAGRNF---KDPQYIDELKETIPFESSIQSFLVLSATA---KY---EDMKHIVKRFSS--VPVNQYIFTKIDET  252 (296)
T ss_dssp             SEEEEECCCCCT---TSHHHHHHHHHHSCCCTTEEEEEEEETTB---CH---HHHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred             CEEEEeCCCCCh---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---CH---HHHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence            799999999853   23333444444433234677788854431   11   122233333431  13456788999964

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.66  E-value=3.6e-05  Score=64.44  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIE   99 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~   99 (243)
                      -.++++|++|+|||||+|.|+ ......+....       +|.....  ....+ --.++||||+..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~~~-~g~v~d~pg~~~  228 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPFGK-GSFVGDTPGFSK  228 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEETT-TEEEESSCCCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEcCC-CcEEEECcCcCc
Confidence            478999999999999999999 54322222221       1211111  11111 246899999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.65  E-value=4.6e-05  Score=66.70  Aligned_cols=72  Identities=19%  Similarity=0.121  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .+..+.||||||....   +......+......-.+|.+++|++..  .. ......++.+.+    .. ...-+|+||.
T Consensus       179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~----~l-~i~GVIlTKl  247 (425)
T 2ffh_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDE----KV-GVTGLVLTKL  247 (425)
T ss_dssp             TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHH----HT-CCCEEEEESG
T ss_pred             CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHh----cC-CceEEEEeCc
Confidence            4567999999997533   333333333322222688888885543  22 222233333332    22 3467899999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |..
T Consensus       248 D~~  250 (425)
T 2ffh_A          248 DGD  250 (425)
T ss_dssp             GGC
T ss_pred             CCc
Confidence            863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.58  E-value=8.4e-05  Score=62.14  Aligned_cols=59  Identities=29%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      -.++++|++|+|||||+|.|.|......+....       .+......  ... ..-.++||||+....
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~~~-~~g~v~q~p~~~~~~  235 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--KFD-FGGYVVDTPGFANLE  235 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--ECT-TSCEEESSCSSTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--EcC-CCCEEEECcCCCccC
Confidence            468899999999999999999876433222211       11111111  111 124689999986443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.56  E-value=6.1e-05  Score=65.46  Aligned_cols=78  Identities=9%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhcc--
Q 026113           81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGE--  151 (243)
Q Consensus        81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~--  151 (243)
                      ...+.+..+.+|||+|+...+..   +    ..|+  .+++++|+|++++...       ....-..+..++......  
T Consensus       211 ~~~~~~v~l~iwDtaGQe~~r~~---w----~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          211 KFQVDKVNFHMFDVGGQRDERRK---W----IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW  281 (402)
T ss_dssp             EEEETTEEEEEEEECCSGGGGGG---G----GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred             EeecCCccceecccchhhhhhhh---h----Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence            34567889999999999533211   1    1122  5899999999886510       012222334444443321  


Q ss_pred             cccccEEEEEeCCCCC
Q 026113          152 QIWKRALIVLTHAQLS  167 (243)
Q Consensus       152 ~~~~~~ivV~tk~D~~  167 (243)
                      ....|+++|+||+|+.
T Consensus       282 ~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          282 LRTISVILFLNKQDLL  297 (402)
T ss_dssp             CSSCCEEEEEECHHHH
T ss_pred             CCCCeEEEEEEChhhh
Confidence            1236899999999984

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.51  E-value=7.4e-05  Score=63.92  Aligned_cols=25  Identities=36%  Similarity=0.618  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      -.++++|.+|+|||||+|.|+|...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            4789999999999999999999764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.48  E-value=6.9e-05  Score=64.32  Aligned_cols=78  Identities=9%  Similarity=0.075  Sum_probs=44.3

Q ss_pred             EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc--c-----ChhHHHHHHHHHHHhcc--
Q 026113           81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR--V-----DNLDKQITRAITDNFGE--  151 (243)
Q Consensus        81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~--~-----~~~~~~~l~~l~~~~~~--  151 (243)
                      .....+..+.+|||+|+...+..       ...|+  .++++||+|++++...  +     ...-...+.++......  
T Consensus       195 ~~~~~~~~l~i~Dt~Gq~~~r~~-------w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~  265 (362)
T 1zcb_A          195 DFEIKNVPFKMVDVGGQRSERKR-------WFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV  265 (362)
T ss_dssp             EEEETTEEEEEEEECC--------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             EeeeCCeEEEEEeccchhhhhhh-------HHHHh--CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence            34567889999999999432211       11122  5899999998886511  0     11222333344443321  


Q ss_pred             cccccEEEEEeCCCCC
Q 026113          152 QIWKRALIVLTHAQLS  167 (243)
Q Consensus       152 ~~~~~~ivV~tk~D~~  167 (243)
                      -...|+|+|+||+|+.
T Consensus       266 ~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          266 FSNVSIILFLNKTDLL  281 (362)
T ss_dssp             GTTSEEEEEEECHHHH
T ss_pred             hCCCCEEEEEEChhhh
Confidence            1236899999999985

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.45  E-value=0.00058  Score=58.47  Aligned_cols=25  Identities=20%  Similarity=0.500  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+-.++++|.+|+||||+++.|.|.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhh
Confidence            3457899999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.45  E-value=0.00053  Score=57.30  Aligned_cols=25  Identities=20%  Similarity=0.500  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++-.++++|.+|+||||+++.|.|.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998854

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.42  E-value=9.3e-05  Score=62.04  Aligned_cols=24  Identities=25%  Similarity=0.565  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+-.|+++|.+|+||||++..|.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            345789999999999999988774

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.34  E-value=0.00065  Score=57.24  Aligned_cols=24  Identities=17%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+-.|+++|.+|+||||++..|.+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999887763

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.32  E-value=0.00022  Score=59.40  Aligned_cols=72  Identities=19%  Similarity=0.113  Sum_probs=39.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .+..+.++||||....   +......+........++.+++|++..  . ...   .+..+. .+.... ...-+|+||.
T Consensus       179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~--~-~~~---~~~~~~-~~~~~~-~i~givlnk~  247 (295)
T 1ls1_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--T-GQE---ALSVAR-AFDEKV-GVTGLVLTKL  247 (295)
T ss_dssp             HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--G-THH---HHHHHH-HHHHHT-CCCEEEEECG
T ss_pred             CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCC--C-cHH---HHHHHH-HHhhcC-CCCEEEEECC
Confidence            3567999999987532   333333433332222678888885543  2 122   222222 222221 3466899999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |..
T Consensus       248 d~~  250 (295)
T 1ls1_A          248 DGD  250 (295)
T ss_dssp             GGC
T ss_pred             CCC
Confidence            864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.26  E-value=0.00048  Score=53.53  Aligned_cols=68  Identities=10%  Similarity=0.042  Sum_probs=41.6

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      ...+.|+|||+..     .......+.      .+|.++++...+...  ..-..+++.+.+........++.+|+|+.+
T Consensus        75 ~yD~viiD~~~~~-----~~~~~~~l~------~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~  141 (206)
T 4dzz_A           75 DYDFAIVDGAGSL-----SVITSAAVM------VSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKI  141 (206)
T ss_dssp             TSSEEEEECCSSS-----SHHHHHHHH------HCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred             CCCEEEEECCCCC-----CHHHHHHHH------HCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            4579999999874     122222332      578999996665432  444555655554422122246699999998


Q ss_pred             C
Q 026113          166 L  166 (243)
Q Consensus       166 ~  166 (243)
                      .
T Consensus       142 ~  142 (206)
T 4dzz_A          142 E  142 (206)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.25  E-value=0.0023  Score=56.20  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh-------CC----------CcccccC-CCCCCCeeEEEE----ee-eCC--eEEEEEeC
Q 026113           40 LTILVMGKGGVGKSSTVNSII-------GE----------KAVTVST-FQSEGPRPVMVS----RS-RAG--FTLNIVDT   94 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll-------g~----------~~~~~~~-~~~~t~~~~~~~----~~-~~~--~~~~viDT   94 (243)
                      .-|.++|..++|||+|+|.|+       |.          ..|.++. ..++|.......    .. ..|  ..+.++||
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT  147 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT  147 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence            455599999999999999765       21          2222221 122333222211    11 123  46999999


Q ss_pred             CCCCCCCCCcHH--HHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHH
Q 026113           95 PGLIEGGYVNYH--AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD  147 (243)
Q Consensus        95 PG~~~~~~~~~~--~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~  147 (243)
                      .|+++.......  .+-.+.-.    -.+++||=..-   .+.+.+.+.|..+.+
T Consensus       148 EG~~d~~~~~~~d~~ifaLa~L----LSS~~IyN~~~---~i~~~~L~~L~~~te  195 (457)
T 4ido_A          148 QGTFDSQSTLRDSATVFALSTM----ISSIQVYNLSQ---NVQEDDLQHLQLFTE  195 (457)
T ss_dssp             CCBTCTTCCHHHHHHHHHHHHH----HCSEEEEEEES---SCCHHHHHHHHHHHH
T ss_pred             cCCCCcccCccccHHHHHHHHH----Hhhheeecccc---cCCHHHHHHHHHHHH
Confidence            999887654321  11111111    23455554221   245556666655544

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.25  E-value=1.7e-05  Score=62.21  Aligned_cols=26  Identities=27%  Similarity=0.622  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.--|+++|++|+|||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            44578999999999999999999653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.23  E-value=0.00027  Score=60.42  Aligned_cols=73  Identities=7%  Similarity=0.017  Sum_probs=42.6

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCC-------cccChhHHHHHHHHHHHhcc--ccccc
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV-------YRVDNLDKQITRAITDNFGE--QIWKR  156 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~-------~~~~~~~~~~l~~l~~~~~~--~~~~~  156 (243)
                      ...+.+|||+|+...+..-       ..|  -.+++++|+|++++.       ....+.-..+..++......  ....|
T Consensus       182 ~v~l~iwDtaGQe~~r~~~-------~~y--~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p  252 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKW-------IHL--FEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  252 (354)
T ss_dssp             --EEEEEEECCSTTGGGGT-------GGG--CTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred             ceeeEEEECCCchhhhHHH-------HHH--hCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence            4689999999995432221       111  258999999988751       01112223334444443321  12368


Q ss_pred             EEEEEeCCCCC
Q 026113          157 ALIVLTHAQLS  167 (243)
Q Consensus       157 ~ivV~tk~D~~  167 (243)
                      +++|+||+|+.
T Consensus       253 iiLvgNK~DL~  263 (354)
T 2xtz_A          253 FMLFLNKFDIF  263 (354)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEEECcchh
Confidence            99999999984

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.13  E-value=0.0003  Score=55.24  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.+.+.+...+...|.++|.+|+|||||++.|.+.-
T Consensus        11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334444333467899999999999999999988753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.07  E-value=0.00054  Score=54.12  Aligned_cols=25  Identities=24%  Similarity=0.419  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...+|+++|.+|+|||||++.++..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999865

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.00  E-value=0.00033  Score=53.90  Aligned_cols=23  Identities=35%  Similarity=0.667  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +++++|++|+|||||++.|+|.-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.93  E-value=0.00037  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.627  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.++++|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.93  E-value=0.00037  Score=54.45  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.++++|++|+|||||++.|++.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.81  E-value=0.00051  Score=53.90  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      --++++|++|||||||++.|.|..
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            467899999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.74  E-value=0.0057  Score=45.37  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+|||+|++.+.+..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.73  E-value=0.00078  Score=54.18  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            468999999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.71  E-value=0.00069  Score=52.63  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--++++|++|||||||++.|.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.70  E-value=0.00069  Score=53.70  Aligned_cols=25  Identities=24%  Similarity=0.579  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+|||||++.|.|..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468899999999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.70  E-value=0.00071  Score=53.82  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.--++++|++|||||||++.|+|..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            34578899999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.68  E-value=0.0012  Score=50.64  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .-.|+++|.+||||||+++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            457899999999999999999886

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.68  E-value=0.0022  Score=53.26  Aligned_cols=27  Identities=37%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...+..|.++|.+|+|||||++.|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999887643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.66  E-value=0.00088  Score=53.43  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.61  E-value=0.0011  Score=53.26  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999985

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.59  E-value=0.0012  Score=53.37  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999875

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.58  E-value=0.0013  Score=53.16  Aligned_cols=25  Identities=24%  Similarity=0.197  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|.|..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.57  E-value=0.0011  Score=54.52  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|||||||++.|.|-.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.57  E-value=0.0012  Score=50.22  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--++++|++|||||||++.+++.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSCG
T ss_pred             CEEEEEECCCCCCHHHHHHHHccC
Confidence            346789999999999999986643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.57  E-value=0.0012  Score=54.07  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|||||||++.|.|-.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.57  E-value=0.0012  Score=52.33  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|+|||||++.|.|..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.57  E-value=0.0012  Score=54.19  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|||||||++.|.|-.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.57  E-value=0.0013  Score=53.37  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|-.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.56  E-value=0.0012  Score=53.82  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.54  E-value=0.0014  Score=52.41  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|..
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.52  E-value=0.0012  Score=51.59  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +...|.++|.+|+|||||++.|.|.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.51  E-value=0.0012  Score=49.82  Aligned_cols=26  Identities=15%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.-.++++|+.|+|||||++.|.|.-
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34468899999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.51  E-value=0.0011  Score=54.17  Aligned_cols=26  Identities=42%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.-.++++|++|+|||||++.|+|.-
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            34578999999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.50  E-value=0.0014  Score=53.68  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCC
Confidence            467899999999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.50  E-value=0.0014  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      =.++++|++|+|||||++.|.|-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999996

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.49  E-value=0.0015  Score=52.92  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            367899999999999999999975

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.49  E-value=0.0014  Score=52.83  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.48  E-value=0.0015  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.48  E-value=0.0014  Score=53.32  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999999975

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.47  E-value=0.0016  Score=53.32  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      =.++++|++|+|||||++.|.|-
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999996

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.46  E-value=0.042  Score=46.59  Aligned_cols=22  Identities=23%  Similarity=0.441  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+++.|++|+|||++++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.45  E-value=0.0016  Score=53.47  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.44  E-value=0.0017  Score=53.59  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            367899999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.40  E-value=0.0018  Score=52.58  Aligned_cols=24  Identities=29%  Similarity=0.591  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999975

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.38  E-value=0.0013  Score=55.00  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            478999999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.38  E-value=0.0019  Score=52.88  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.026  Score=49.39  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|++.|++|+|||+++.++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4578999999999999999998865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.37  E-value=0.002  Score=50.52  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +..-|+++|++|+||||+++.|++..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34578999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.37  E-value=0.0046  Score=49.75  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=25.2

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ...+.......+.+|+++|.+||||||+...|.
T Consensus        18 ~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           18 LKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             HHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHhccCCCcEEEEECCCCCCHHHHHHHHH
Confidence            333333334478999999999999999999886

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.37  E-value=0.002  Score=49.95  Aligned_cols=25  Identities=32%  Similarity=0.545  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ...|+++|.+||||||+++.|.+.-
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999998754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.36  E-value=0.003  Score=52.76  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +.=.++++|++|+|||||++.|+|.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            4457899999999999999999854

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.34  E-value=0.0024  Score=51.37  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII---GEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll---g~~   63 (243)
                      ++..|+++|.+||||||+++.|.   |..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            46789999999999999999999   764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.31  E-value=0.0014  Score=51.73  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      =.++++|++|+|||||++.|.|.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999999987

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.31  E-value=0.0023  Score=52.38  Aligned_cols=24  Identities=25%  Similarity=0.552  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.30  E-value=0.0032  Score=48.95  Aligned_cols=26  Identities=27%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+...|+++|.+|+||||+++.|.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.30  E-value=0.0017  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|+|||||++.|.|.-
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            57899999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.29  E-value=0.078  Score=42.34  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..+++.|++|+|||+++.++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.28  E-value=0.0018  Score=49.67  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .++++|.+|+||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.27  E-value=0.025  Score=46.05  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..+++.|++|+|||+++.++.+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.26  E-value=0.0054  Score=51.57  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..++-|.++|.+||||||+++.|.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999988754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.25  E-value=0.002  Score=48.56  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..|+++|.+|+||||+++.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.25  E-value=0.0053  Score=47.73  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=26.4

Q ss_pred             HHHHHhhhhc-CCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           26 LELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        26 ~~~~~~~~~~-~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .++.+.+.+. ...+..|.++|.+|+||||+++.|.+
T Consensus         8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3344444433 23567899999999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.25  E-value=0.0024  Score=49.40  Aligned_cols=21  Identities=33%  Similarity=0.688  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |+|+|++|+|||||++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.23  E-value=0.0081  Score=47.06  Aligned_cols=66  Identities=15%  Similarity=0.061  Sum_probs=39.3

Q ss_pred             CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           86 GFTLNIVDTPGL-IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        86 ~~~~~viDTPG~-~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      ...+.|+|||+. ...     .....+.      .+|.++++...+.... ..-..+++.+.+..    ..++.+|+|+.
T Consensus        67 ~yD~viiD~p~~~~~~-----~~~~~l~------~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~----~~~~~vv~N~~  130 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE-----DLEALAD------GCDLLVIPSTPDALAL-DALMLTIETLQKLG----NNRFRILLTII  130 (209)
T ss_dssp             GCSEEEEEEECCCSSS-----HHHHHHH------TSSEEEEEECSSHHHH-HHHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred             cCCEEEEeCCCCcCcH-----HHHHHHH------HCCEEEEEecCCchhH-HHHHHHHHHHHhcc----CCCEEEEEEec
Confidence            457999999987 432     2222332      7899999966553221 22234444444421    24688999999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      +..
T Consensus       131 ~~~  133 (209)
T 3cwq_A          131 PPY  133 (209)
T ss_dssp             CCT
T ss_pred             CCc
Confidence            853

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.22  E-value=0.0019  Score=55.21  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.++++|++|+|||||+++++|.
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            38999999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.21  E-value=0.0025  Score=49.66  Aligned_cols=25  Identities=28%  Similarity=0.604  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ....|+++|.+||||||+++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567899999999999999998743

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.20  E-value=0.0022  Score=54.83  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+|||||++.|++.-
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4589999999999999999999874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.20  E-value=0.0026  Score=49.46  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ....|+++|.+|+||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.036  Score=48.35  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|++.|++|+|||+++.++.+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            4577999999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.18  E-value=0.0026  Score=52.75  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|+|||||++.|.|..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            67899999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.16  E-value=0.0062  Score=51.03  Aligned_cols=26  Identities=31%  Similarity=0.272  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+...|.++|.+|||||||++.|.|.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            45678999999999999999998874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.16  E-value=0.0017  Score=51.70  Aligned_cols=24  Identities=21%  Similarity=0.545  Sum_probs=15.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh-CCC
Q 026113           40 LTILVMGKGGVGKSSTVNSII-GEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll-g~~   63 (243)
                      -.++++|++||||||+++.|. +..
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            468999999999999999999 753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.13  E-value=0.0024  Score=54.01  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      -.++++|++|+|||||++.|+|.-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.12  E-value=0.0014  Score=50.12  Aligned_cols=23  Identities=13%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .+.++|.+|+|||||++.|++.-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999999764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.11  E-value=0.008  Score=49.98  Aligned_cols=64  Identities=9%  Similarity=0.086  Sum_probs=40.4

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC-hhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      .+.+|||  +.......+       .++  .++|++|+|++++....+ .....|+..+..     ...|+++|+||+|+
T Consensus        64 ~~~iwD~--qer~~~l~~-------~~~--~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL  127 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTK-------PHV--ANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDL  127 (301)
T ss_dssp             SEEEEEE--CCCSCEETT-------TTE--ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGG
T ss_pred             eEEEEEE--ccccceeec-------ccc--ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHc
Confidence            7999999  433332222       111  489999999888643222 223445544433     13699999999998


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       128 ~  128 (301)
T 1u0l_A          128 Y  128 (301)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.08  E-value=0.0039  Score=47.09  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|++.|.+|+||||+++.|..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            35689999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.06  E-value=0.0032  Score=53.86  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|||||||++.|.|-.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            367899999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.06  E-value=0.003  Score=53.97  Aligned_cols=24  Identities=21%  Similarity=0.553  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =-++++|++|||||||++.|.|-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            357899999999999999999975

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.043  Score=47.52  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|++.|++|+|||+++.++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.05  E-value=0.0073  Score=44.35  Aligned_cols=26  Identities=12%  Similarity=0.254  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..+..|++.|++|+|||+++.++...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            35678999999999999999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.04  E-value=0.0033  Score=53.63  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|||||||++.|.|-.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            357899999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.02  E-value=0.0033  Score=49.57  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|+++|.+|+||||+++.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.02  E-value=0.0028  Score=54.21  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-+++++|.+|+|||||++.|.|.-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.01  E-value=0.0037  Score=50.21  Aligned_cols=25  Identities=28%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +...|.++|++|||||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999988763

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.00  E-value=0.004  Score=47.03  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .-.|+++|.+|+||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.00  E-value=0.0036  Score=53.90  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =.++++|++|||||||++.|.|-..
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCC
Confidence            3578999999999999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.99  E-value=0.0028  Score=55.32  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-.++++|++|+|||||+++|++.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhh
Confidence            3446899999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.98  E-value=0.0037  Score=53.47  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            467899999999999999999975

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.97  E-value=0.0031  Score=54.16  Aligned_cols=25  Identities=44%  Similarity=0.543  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-.++++|++|+||||+++.|++.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3457999999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.97  E-value=0.0029  Score=49.79  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .=-++++|++|+|||||++.|++.
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.96  E-value=0.0037  Score=53.41  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            357899999999999999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.94  E-value=0.0033  Score=56.33  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ...++++|++||||||++++|++.-
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3459999999999999999999764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.94  E-value=0.0035  Score=47.95  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..++++|.+|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.94  E-value=0.0045  Score=46.24  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~l   59 (243)
                      ..|+++|.+||||||+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.93  E-value=0.061  Score=45.40  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..+-.+++.|++|+|||++++.+...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.93  E-value=0.0054  Score=46.61  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .-.++++|++|+|||+|++++.+.-
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999988754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.92  E-value=0.004  Score=53.52  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =.++++|++|+|||||++.|.|-..
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            3578999999999999999999853

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.92  E-value=0.0055  Score=47.68  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .....|+++|.+|+||||+++.|.+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999999876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.91  E-value=0.0051  Score=47.80  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..|+++|.+||||||+++.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999976

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.91  E-value=0.0048  Score=46.62  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|+++|.+||||||+++.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.90  E-value=0.0042  Score=53.37  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|||||||++.|.|-.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            467899999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.90  E-value=0.0046  Score=46.30  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|+++|.+||||||+++.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.88  E-value=0.0039  Score=48.38  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+|+++|.+||||||+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.052  Score=47.38  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|++.|++|+|||+++.++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.85  E-value=0.012  Score=44.35  Aligned_cols=36  Identities=19%  Similarity=0.376  Sum_probs=25.7

Q ss_pred             HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +..+...+..  ..+-.+++.|++|+|||+++..+...
T Consensus        31 ~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           31 IRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            3444444433  24567899999999999999988754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.83  E-value=0.0034  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            367899999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.83  E-value=0.0061  Score=46.42  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ....|+++|.+||||||+++.|.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999886

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.83  E-value=0.0058  Score=46.73  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|+++|.+|+||||+++.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.81  E-value=0.011  Score=48.81  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+.-|++.|.+||||||++..|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999999863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.80  E-value=0.0039  Score=48.38  Aligned_cols=23  Identities=43%  Similarity=0.536  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|+++|.+||||||+++.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998853

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.78  E-value=0.35  Score=40.27  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +-.|++.|++|+|||+++.++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            467999999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.78  E-value=0.0057  Score=47.39  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +.-.|+++|.+|+||||++..|.+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            345899999999999999998863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.78  E-value=0.0064  Score=46.53  Aligned_cols=25  Identities=36%  Similarity=0.601  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +...|+++|.+|+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999988643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.78  E-value=0.026  Score=48.22  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=18.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+ .+++|++|+||||++++|+
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            45 5689999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.075  Score=46.77  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|+|.|++|+|||+++.++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            5678999999999999999999865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.75  E-value=0.0063  Score=46.36  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|++.|.+||||||+++.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.70  E-value=0.0052  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|+|||||++.|.|-.
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            367899999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.69  E-value=0.0077  Score=46.62  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=21.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ...+..|+++|.+|+||||+++.|.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4467899999999999999998875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.68  E-value=0.0057  Score=51.03  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .....|.++|.+|+|||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.67  E-value=0.0073  Score=46.11  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|++.|.+||||||+...|.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999998875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.67  E-value=0.0072  Score=47.54  Aligned_cols=23  Identities=17%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|+++|.+||||||+++.|.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999998875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.66  E-value=0.0077  Score=48.66  Aligned_cols=26  Identities=23%  Similarity=0.320  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII---GEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll---g~~   63 (243)
                      ....|.++|.+||||||+++.|.   |..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~   54 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWR   54 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            45689999999999999999998   653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.66  E-value=0.0065  Score=47.54  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|+++|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999884

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.65  E-value=0.006  Score=46.36  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      -.+++|++|+||||++.+|.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.64  E-value=0.0034  Score=53.59  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|-.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            367899999999999999999975

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.64  E-value=0.0078  Score=46.37  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++..|+++|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            5788999999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.61  E-value=0.0074  Score=45.94  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ...|+++|.+|+||||++..|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999885

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.58  E-value=0.0078  Score=46.37  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|++.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.57  E-value=0.0071  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..-|++.|.+|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            35678999999999999999998875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.57  E-value=0.0076  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|+++|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999885

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.57  E-value=0.0079  Score=51.46  Aligned_cols=24  Identities=29%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~l   59 (243)
                      ..+..||+|+|.+|+||||++..+
T Consensus        30 ~~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           30 SARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             hcCccEEEEECCCCCcHHHHHHHH
Confidence            346899999999999999998775

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.53  E-value=0.0087  Score=46.37  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ++..|++.|.+||||||+++.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999998863

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.53  E-value=0.16  Score=41.51  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+-.+++.|++|+|||+++.++.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            4578999999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.51  E-value=0.0092  Score=46.05  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++..|++.|.+||||||+++.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999988754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.51  E-value=0.0089  Score=45.77  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ++..|+++|.+||||||+++.|.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999998875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.044  Score=47.91  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|++.|++|+|||+++.++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            4678999999999999999998865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.48  E-value=0.0082  Score=45.53  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +...|+++|.+|+||||+++.|.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.47  E-value=0.0082  Score=43.99  Aligned_cols=25  Identities=12%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..|++.|++|+|||+++.++...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHh
Confidence            4567999999999999999987754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.46  E-value=0.0064  Score=49.89  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      ++++|++|+|||+|++++.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.45  E-value=0.009  Score=46.48  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ++..|++.|.+||||||+++.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.45  E-value=0.0085  Score=47.40  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ++..|+++|.+||||||+++.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999998876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.45  E-value=0.015  Score=49.00  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +-.++++|++|+|||||++.+.+.
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356899999999999999998865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.43  E-value=0.0084  Score=45.67  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|++.|.+|+||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.42  E-value=0.0069  Score=48.72  Aligned_cols=22  Identities=36%  Similarity=0.721  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      -++++|++|+|||+|++++.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.40  E-value=0.0087  Score=53.97  Aligned_cols=24  Identities=29%  Similarity=0.610  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|.|..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.40  E-value=0.0093  Score=50.27  Aligned_cols=20  Identities=25%  Similarity=0.606  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 026113           42 ILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg   61 (243)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.36  E-value=0.0087  Score=47.12  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|+++|.+||||||+++.|.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999998875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.35  E-value=0.0096  Score=46.25  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+..|++.|.+|+||||+++.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999998863

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.33  E-value=0.016  Score=43.50  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=25.4

Q ss_pred             HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +..+.+.+..  ...-.+++.|++|+|||+++..+...
T Consensus        31 ~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           31 IRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             HHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            3444443333  24567899999999999999887654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.33  E-value=0.012  Score=46.17  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+..|++.|.+||||||+++.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.32  E-value=0.0051  Score=51.59  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      -++++|..|||||||+|.|++..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46789999999999999999653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.30  E-value=0.013  Score=44.73  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +...|+++|.+|+||||+++.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            5678999999999999999988643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.30  E-value=0.013  Score=45.26  Aligned_cols=23  Identities=26%  Similarity=0.580  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|++.|.+|+||||+++.|.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999998876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.28  E-value=0.024  Score=48.77  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-.++++|++|+|||||++.|.+.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4558899999999999999998863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.0067  Score=53.59  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ..-.++++|++|+|||||++.|+|..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            45689999999999999999999764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.25  E-value=0.014  Score=47.09  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..+..|+++|.+||||||+...|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.25  E-value=0.0094  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcc
Confidence            378999999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.25  E-value=0.011  Score=44.87  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ....|+++|.+|+||||+++.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            34679999999999999999886

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.23  E-value=0.01  Score=54.04  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.22  E-value=0.012  Score=43.94  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.21  E-value=0.0087  Score=46.96  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      --++++|++|+|||||++.+++.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            45788999999999999998843

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.21  E-value=0.01  Score=44.78  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      +|+++|.+|+||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.21  E-value=0.011  Score=47.92  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      -|+++|.+|+||||+...|.+
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.19  E-value=0.0099  Score=53.57  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =-+.++|++|+|||||++.|.|.-
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            357899999999999999999974

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.18  E-value=0.011  Score=46.21  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|++.|.+||||||+++.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.16  E-value=0.011  Score=43.78  Aligned_cols=20  Identities=40%  Similarity=0.752  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -.+++|++|+||||++.+|.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            34788999999999998875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.13  E-value=0.009  Score=45.26  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=16.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ++..|++.|.+||||||+++.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.13  E-value=0.022  Score=45.79  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +..++++|++|+|||+++.++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            456999999999999999998754

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.12  E-value=0.12  Score=44.39  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..++|.|++|+|||+++.++...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            3578999999999999999998643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.07  E-value=0.013  Score=44.87  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|++.|.+|+||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999988753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.07  E-value=0.015  Score=46.13  Aligned_cols=23  Identities=17%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|+++|.+|+||||+++.|.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            56789999999999999998875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.07  E-value=0.01  Score=48.53  Aligned_cols=23  Identities=35%  Similarity=0.684  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      -++++|++|+|||+|+++|.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            39999999999999999998653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.04  E-value=0.014  Score=46.72  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .++.|++.|.+|+||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999999886

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.04  E-value=0.01  Score=50.40  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.-++.++|.+|+|||||++.|.|..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.012  Score=53.75  Aligned_cols=25  Identities=24%  Similarity=0.571  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =.+.++|++|+|||||++.|.|...
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            4689999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.00  E-value=0.013  Score=53.57  Aligned_cols=24  Identities=25%  Similarity=0.601  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|+|||||++.|.|.-
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            478999999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.00  E-value=0.03  Score=46.89  Aligned_cols=38  Identities=32%  Similarity=0.347  Sum_probs=26.6

Q ss_pred             HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +...+............+++.|++|+|||+++..+...
T Consensus        41 l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           41 LNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            34444443333345567999999999999999998643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.00  E-value=0.64  Score=38.36  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      --+++.|++|+|||+++.++...
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHH
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHH
Confidence            33556666999999999998643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.00  E-value=0.01  Score=52.61  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.++++|++|+|||||++.|.|-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            56789999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.99  E-value=0.0098  Score=54.29  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            478999999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.98  E-value=0.041  Score=42.35  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..+++.|++|+|||+|+.++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999988754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.98  E-value=0.027  Score=43.92  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +--+++.|++|+|||+++..+...
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999988743

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.97  E-value=0.0088  Score=54.37  Aligned_cols=24  Identities=33%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            378999999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.95  E-value=0.016  Score=44.14  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +..|+++|.+|+||||+++.|.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999998875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.94  E-value=0.011  Score=53.94  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|+|||||++.|+|.-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            78999999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.93  E-value=0.011  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      --++++|++|+|||||++.|.+.
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35788999999999999988754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.90  E-value=0.017  Score=46.80  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|+++|.+||||||+++.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999998763

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.88  E-value=0.017  Score=46.47  Aligned_cols=25  Identities=32%  Similarity=0.322  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+++.|++.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999988753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.88  E-value=0.016  Score=44.10  Aligned_cols=21  Identities=24%  Similarity=0.397  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|++.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.87  E-value=0.016  Score=43.46  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      .|++.|.+|+||||+.+.|.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.84  E-value=0.014  Score=44.38  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      .|+++|.+|+||||+...|.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            59999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.83  E-value=0.018  Score=45.53  Aligned_cols=20  Identities=35%  Similarity=0.606  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      .|++.|.+||||||+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.80  E-value=0.039  Score=43.26  Aligned_cols=25  Identities=12%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-.+++.|++|+|||+++..+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.80  E-value=0.015  Score=45.61  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ...|+++|.+||||||+++.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999998874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.78  E-value=0.012  Score=47.54  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .-.|+++|.+|+||||+++.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.77  E-value=0.02  Score=47.10  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+..|+++|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999998886

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.75  E-value=0.016  Score=52.32  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +...|+++|.+||||||+++.|.+.-
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            55789999999999999999988653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.73  E-value=0.02  Score=47.25  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.+++.|++|+|||+++..+.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.72  E-value=0.0074  Score=46.98  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .|++.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998743

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.71  E-value=0.015  Score=45.36  Aligned_cols=23  Identities=17%  Similarity=0.020  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .--++++|++|+|||||+..+++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999986

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.70  E-value=0.019  Score=43.58  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...+.++|.+|+|||||++.|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.70  E-value=0.02  Score=42.79  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      -.|++.|.+||||||+...|.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.68  E-value=0.018  Score=51.89  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      .+.++|++|+|||||++.|.|...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999999753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.68  E-value=0.026  Score=44.06  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..|+++|.+|+||||+++.|.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999987653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.67  E-value=0.015  Score=51.11  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=++.++|.+|+|||||++.|.|..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44688999999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.66  E-value=0.023  Score=43.97  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .....|.++|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999988753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.62  E-value=0.3  Score=42.71  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+-.|++.|++|+|||+++.++...
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.61  E-value=0.01  Score=59.02  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +|.+||++|+|||||++.|++--
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCc
Confidence            89999999999999999999764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.60  E-value=0.02  Score=51.62  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      .+.++|++|+|||||++.|.|...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999999753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.58  E-value=0.039  Score=44.50  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..+++.|++|+|||+++.++...
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHh
Confidence            4578999999999999999998754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.54  E-value=0.042  Score=42.25  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+++.|++|+|||+++..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.53  E-value=0.017  Score=45.69  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--++++|++|+|||||+..+++.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            346789999999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.50  E-value=0.021  Score=52.17  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|+|||||++.|.|..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999975

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.45  E-value=0.03  Score=47.34  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +.-|+|+|+||+|||+|...|...
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.44  E-value=0.022  Score=44.52  Aligned_cols=25  Identities=36%  Similarity=0.598  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ....|+++|.||+|||+|+..|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999998754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.42  E-value=0.031  Score=46.37  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             HHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+...+.........+..+++.|++|+|||+++..+..
T Consensus        23 ~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           23 KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             HHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            34444444433333457899999999999999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.38  E-value=0.026  Score=44.22  Aligned_cols=21  Identities=19%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      +|+++|++||||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999998887763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.27  E-value=0.037  Score=46.74  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..+-.+++.|++|+|||+|++.+.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.21  E-value=0.03  Score=46.08  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..|+++|.+|+||||+++.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.19  E-value=0.027  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.648  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCc
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~~   64 (243)
                      +.++|++|+|||||++.|.|...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999999753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.14  E-value=0.07  Score=45.05  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +-.+++.|++|+|||+++.++..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988774

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.09  E-value=0.074  Score=43.70  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .....+++.|++|+|||+++.++...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999876643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.05  E-value=0.031  Score=43.56  Aligned_cols=20  Identities=40%  Similarity=0.752  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -.+++|++|+||||++.+|.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            44778999999999998875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.05  E-value=0.031  Score=44.45  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ....|+++|.+|+||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.01  E-value=0.04  Score=43.78  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ....|++.|.+|+||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            567899999999999999988764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.93  E-value=0.036  Score=48.98  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..|+++|.+|+||||+++.|...
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999998743

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.90  E-value=0.025  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      --++++|++|+|||||+..+++
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999998885

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.88  E-value=0.028  Score=55.96  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      -.++++|++|+|||||++.|+|.-
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             cEEEEEecCCCcHHHHHHHhcccc
Confidence            388999999999999999999874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.88  E-value=0.078  Score=42.92  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..+..+++.|++|+|||+++.++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            46688999999999999999988753

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=93.85  E-value=0.062  Score=44.57  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..+..|++.|++|+|||+++.++..
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHH
Confidence            3567899999999999999998875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.85  E-value=0.061  Score=45.14  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+++.|++|+||||++..+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=93.81  E-value=0.039  Score=45.53  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+.-+++.|++|+|||+++.++...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567788899999999999998743

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.80  E-value=0.04  Score=46.26  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..|+++|.+|+||||+...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888743

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.78  E-value=0.021  Score=54.85  Aligned_cols=23  Identities=43%  Similarity=0.725  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .+.++|++|+|||||++.|+|..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.77  E-value=0.043  Score=45.89  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +.-|+++|+||+|||+|...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            346889999999999999998744

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=93.71  E-value=0.031  Score=55.57  Aligned_cols=24  Identities=33%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =+++++|++|+|||||++.|+|.-
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.70  E-value=0.056  Score=42.38  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      -.+++.|++|+|||+++.++..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999988877764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.69  E-value=0.32  Score=45.82  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .+.-|+|.|++|+|||+|+.++.+.-
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=93.68  E-value=0.2  Score=42.72  Aligned_cols=54  Identities=11%  Similarity=0.118  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      .+.+.++.+.  ...|++++|+++..     .+..+...+.+.++   .+|+++|+||+|+.+.
T Consensus        58 ~f~~~l~~i~--~~~~~il~VvD~~d-----~~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~  111 (368)
T 3h2y_A           58 DFLRILNGIG--KSDALVVKIVDIFD-----FNGSWLPGLHRFVG---NNKVLLVGNKADLIPK  111 (368)
T ss_dssp             HHHHHHHHHH--HSCCEEEEEEETTS-----HHHHCCTTHHHHSS---SSCEEEEEECGGGSCT
T ss_pred             HHHHHHHHHh--ccCcEEEEEEECCC-----CcccHHHHHHHHhC---CCcEEEEEEChhcCCc
Confidence            3444444333  47889999977743     23455556666655   3799999999999743

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.66  E-value=0.099  Score=45.89  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +...+..+......+-.+++.|++|+|||+++.++..
T Consensus        49 l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           49 CGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence            3334443333223456899999999999999988763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.60  E-value=0.057  Score=42.66  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ++--|+++|++||||+|....|..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445577899999999998887763

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.59  E-value=0.09  Score=44.14  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .+++.|++|+|||+|...+..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999988874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=93.56  E-value=0.07  Score=44.48  Aligned_cols=25  Identities=36%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..+++.|++|+|||+++.++...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3567999999999999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.51  E-value=0.046  Score=42.11  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|.+.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999988754

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.51  E-value=0.074  Score=44.54  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=23.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +..+-.+++.|++|+|||++++.++..
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            347789999999999999999998854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.49  E-value=0.01  Score=47.42  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.4

Q ss_pred             EEEcCCCCcHHHHHHHHhCCC
Q 026113           43 LVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        43 llvG~~g~GKSSlin~llg~~   63 (243)
                      +++|++|+|||||+++|.|.-
T Consensus        31 ~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           31 TLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHhccc
Confidence            678999999999999998653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=93.47  E-value=0.012  Score=50.81  Aligned_cols=20  Identities=30%  Similarity=0.385  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      .++++|++|+|||||+++|.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88999999999999998874

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=93.46  E-value=2.4  Score=34.63  Aligned_cols=65  Identities=17%  Similarity=0.248  Sum_probs=39.4

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+.|||||.....  .+.  . .+     ...+|.+|+|+..+.... ..-...++.+.+. +   ...+-+|+|+.+..
T Consensus       203 D~VIIDtpp~~~~--~da--~-~l-----~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~-g---~~~~GvVlN~v~~~  267 (286)
T 3la6_A          203 DLVLIDTPPILAV--TDA--A-IV-----GRHVGTTLMVARYAVNTL-KEVETSLSRFEQN-G---IPVKGVILNSIFRR  267 (286)
T ss_dssp             SEEEEECCCTTTC--THH--H-HH-----TTTCSEEEEEEETTTSBH-HHHHHHHHHHHHT-T---CCCCEEEEEEECCC
T ss_pred             CEEEEcCCCCcch--HHH--H-HH-----HHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhC-C---CCEEEEEEcCcccc
Confidence            4899999998532  111  1 11     147899999977765332 2333455555443 2   14577899999853

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.43  E-value=0.042  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      .-|+++|.+|+||||+...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.41  E-value=0.06  Score=44.91  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +.-|+++|+||+|||+|...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            456889999999999999998743

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.39  E-value=0.43  Score=45.30  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-.++++|++|+|||+++..+...
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=93.29  E-value=0.046  Score=45.18  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+-.+++.|++|+|||+++.++.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            4567999999999999999998854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.28  E-value=0.056  Score=43.02  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..|++.|..|+||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999998864

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=93.28  E-value=0.051  Score=46.25  Aligned_cols=25  Identities=28%  Similarity=0.538  Sum_probs=21.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +....||+++|..++||||++..+-
T Consensus         6 ~~~~~k~lllG~~~sGKsT~~kq~~   30 (354)
T 2xtz_A            6 GIHIRKLLLLGAGESGKSTIFKQIK   30 (354)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceeEEEECCCCCcHHHHHHHHH
Confidence            4467899999999999999987754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.25  E-value=0.039  Score=46.11  Aligned_cols=24  Identities=33%  Similarity=0.619  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-++++|.+|+||||+++.+++.
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            457999999999999999999865

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.21  E-value=0.052  Score=48.51  Aligned_cols=26  Identities=8%  Similarity=0.111  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+....|+++|.+||||||+.+.|..
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cccceEEEecccCCCCHHHHHHHHHH
Confidence            34568999999999999999998763

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=93.17  E-value=0.092  Score=43.65  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-.+++.|++|+|||+++.++.+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.17  E-value=0.13  Score=43.49  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..+-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.15  E-value=0.061  Score=46.76  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+.-|+++|.+||||||+++.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4577999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.15  E-value=0.051  Score=41.41  Aligned_cols=24  Identities=25%  Similarity=0.535  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..=+++.|.+|+||||+.-.+...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            356899999999999999888744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	1e-58
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-05
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-05
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	4e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-04
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	0.002
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.002
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	0.002
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.003
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.004
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  184 bits (467), Expect = 1e-58
 Identities = 161/227 (70%), Positives = 187/227 (82%), Gaps = 3/227 (1%)

Query: 8   IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV 67
           +REW GI  F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSIIGE+ V++
Sbjct: 1   VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI 60

Query: 68  STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVD 127
           S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTIDVLLYVD
Sbjct: 61  SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVD 120

Query: 128 RLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLK 187
           RLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SKRSEALL+
Sbjct: 121 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 180

Query: 188 FVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQ 234
            V     + KKD Q S +PVVL+ENSGRC KN++DEKV  LP+    
Sbjct: 181 VVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV--LPNGIAW 224

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 19/172 (11%)

Query: 21  TQTKLLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---E 73
               +      +           L + V G+ G GKSS +N++ G         ++   E
Sbjct: 34  RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE 93

Query: 74  GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR 133
                   +      +   D PG+   G  N+     +++    +    ++        R
Sbjct: 94  VTMERHPYKHPNIPNVVFWDLPGI---GSTNFPPDTYLEKMKFYEYDFFIIISAT----R 146

Query: 134 VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL 185
               D  I +AI       + K    V T     + +  D E     + + L
Sbjct: 147 FKKNDIDIAKAI-----SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL 193

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 3/149 (2%)

Query: 42  ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101
           + ++G    GKSS + ++            +     + V          + D PG+IEG 
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG- 62

Query: 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161
                   L   FL +     +L              + + + +       + + +L+ L
Sbjct: 63  --ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120

Query: 162 THAQLSLPDRLDYEVFCSKRSEALLKFVS 190
               L   + +        R    +  VS
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVS 149

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 33  KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
           K E  + + + ++G+  VGKS+  N+I+ ++   VS        PV       G     V
Sbjct: 2   KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 93  DTPGLIEGGYVNYHAIQLIKRFLLNKTI---DVLLYVDRLDVYRVDNLDKQITRAITDNF 149
           DT GL     V    ++    + +  +I   DV++ V            +          
Sbjct: 62  DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGR 121

Query: 150 GEQIWKRALIVLTHAQ 165
              +      ++ H +
Sbjct: 122 ASVVVFNKWDLVVHRE 137

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 1/140 (0%)

Query: 40  LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
           + +++ G+   GKSS +N++ G +A  V+         +       G  L+I+DT GL E
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRAL 158
                           + +   VL  VD      VD  +      A           R  
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 159 IVLTHAQLSLPDRLDYEVFC 178
             +T   L + +   + +  
Sbjct: 122 ADITGETLGMSEVNGHALIR 141

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 40  LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
           L ++++GK  VGKS+ +N ++ E    V+         +       G    IVDT G + 
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG-VR 59

Query: 100 GGYVNYHAIQLIKRFLLN-KTIDVLLYV 126
               +      I+R L   +  D++L+V
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFV 87

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIV 92
          ++ + TL IL++G+ GVGKSS +     +     ++       +   +S       L I 
Sbjct: 2  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 93 DTPG 96
          DT G
Sbjct: 62 DTAG 65

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 42 ILVMGKGGVGKSSTVNSII-GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
          IL++G   VGK+S +             +      +   + R+     L I DT G
Sbjct: 8  ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 39/86 (45%)

Query: 41  TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
           T+L++G+  VGKS+  N ++ +K   V   +     PV  +    G T  +VDT G+ + 
Sbjct: 2   TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 101 GYVNYHAIQLIKRFLLNKTIDVLLYV 126
                          + +  D++L+V
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFV 87

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 41  TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
            + ++G   VGKS+ ++ +   K        +     + +  +  G +  + D PGLIEG
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62

Query: 101 GYVNYHAIQLIKRFL 115
               +  + L  +FL
Sbjct: 63  ---AHQGVGLGHQFL 74

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
          LL +L KLK      + IL++G    GK++ +  +  E 
Sbjct: 2  LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED 40

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
           LV+G  G GKS  ++  I +K     +          +++       L I DT G
Sbjct: 8  FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS 68
          E   +  + ++GK  VGKS+ +N+++G K   +S
Sbjct: 1  EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS 34

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
          IL++G  GVGKS  +   + +K   +  T      +   V  +     L I DT G
Sbjct: 5  ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST 69
          TI+  G+  VGKS+ +  + G+K      
Sbjct: 2  TIIFAGRSNVGKSTLIYRLTGKKVRRGKR 30

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 42  ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101
           I ++G+  VGKS+ +N ++G+K    S         ++   +   +    VDTPGL    
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
               + +           ++++++V   +  R    D+ +   + +     I 
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVV--EGTRWTPDDEMVLNKLREGKAPVIL 118

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
          I+++G  GVGK+  V                        V  +     L I DT G
Sbjct: 8  IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	100.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.81
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.75
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.7
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.7
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.69
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.68
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.67
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.67
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.66
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.64
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.64
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.63
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.62
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.61
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.6
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.59
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.58
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.58
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.57
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.57
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.56
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.55
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.55
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.52
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.51
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.51
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.48
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.47
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.46
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.45
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.45
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.45
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.37
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.35
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.33
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.31
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.31
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.29
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.27
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.26
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.26
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.24
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.23
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.22
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.22
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.21
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.21
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.18
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.13
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.1
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.1
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.07
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.04
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.98
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.98
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.92
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.75
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.62
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.56
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.47
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.46
d1okkd2	207	GTPase domain of the signal recognition particle r	98.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.41
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.41
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.39
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.44
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.14
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.08
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.01
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.99
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.96
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.92
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.92
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.84
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.81
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.8
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.76
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.76
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.75
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.71
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.71
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.69
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.69
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.68
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.67
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.64
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.63
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.61
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.59
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.57
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.54
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.53
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.52
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.51
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.51
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.49
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.49
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.48
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.4
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.37
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.36
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.31
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.31
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.31
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.29
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.28
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.27
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.26
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.26
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.25
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.25
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.24
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.24
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.21
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.21
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.2
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.19
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.17
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.17
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.13
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.04
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.03
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.95
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.86
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.85
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.81
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.49
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.4
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.36
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.3
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.29
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.24
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.13
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.98
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.98
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.8
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.78
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.48
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.47
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.35
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.3
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.24
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.07
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.06
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.05
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.03
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.84
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.77
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.77
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.65
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.55
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.46
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.33
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.27
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.26
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.19
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.14
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.13
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.09
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.07
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.97
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.78
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.63
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.61
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.58
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.5
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.49
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.48
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.47
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.35
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.22
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.21
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.06
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.7
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.54
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.33
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.3
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.14
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.04
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.69
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.48
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.26
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.2
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.07
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.02
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.83
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.8
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.67
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.57
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	89.55
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.54
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.4
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.01
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.45
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	87.04
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.8
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.57
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	85.79
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.73
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.32
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.12
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.87
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.1
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.95
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.59
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.04
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.54
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	80.75
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	80.7
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.67

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.9e-37  Score=253.89  Aligned_cols=227  Identities=70%  Similarity=1.077  Sum_probs=201.4

Q ss_pred             hhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE
Q 026113            9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT   88 (243)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~   88 (243)
                      ++|.|+..++.+.+..+.++...+.+....+++|+|+|++|+|||||+|+|+|...+.++..+++|..+..+.....|..
T Consensus         2 ~~~~~~~~~~~~~~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~   81 (257)
T d1h65a_           2 REWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT   81 (257)
T ss_dssp             EECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE
T ss_pred             chhhhHhhhhHHHHHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE
Confidence            57999999999999999999999998888999999999999999999999999999888888888888888888899999


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113           89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus        89 ~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      +.+|||||+.++....++....+..+....++|+++||++++..+++..+...++.+.+.||+++++|+|+|+||+|..+
T Consensus        82 i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_          82 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             EEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            99999999998877777777777766666789999999999888899999999999999999999999999999999987


Q ss_pred             CCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113          169 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP  238 (243)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~  238 (243)
                      ++..++++|+....+.++++|..+...... .+...+|..+++|.+.|++|+..+++  ||.+..|...+
T Consensus       162 ~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~~l~en~~~~~~n~~~ekv--lp~~~~~~~~l  228 (257)
T d1h65a_         162 PDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASDIPVVLIENSGRCNKNDSDEKV--LPNGIAWIPHL  228 (257)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGCCCEEECCCCTTCCBCTTSCBB--CTTSCBHHHHH
T ss_pred             cCCCcHHHHHHhhhHHHHHHHHHHhhhhhh-hccccCCEEEEecCCccccccccccc--ccCCcchHHHH
Confidence            778899999988888899999886543322 12345788899999999999999999  99999997654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=2.9e-19  Score=137.60  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=93.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH-HHHHHHHhc
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI-QLIKRFLLN  117 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~-~~~~~~~~~  117 (243)
                      .-.|+++|.+|+|||||+|+|+|.+...++..+.+|...........+..+.++||||+........+.. +....+  .
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~--~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA--L   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH--T
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccc--c
Confidence            3479999999999999999999998777777777777777777778899999999999976654443322 222222  2


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .++|++|+|+++.. .....+..+++.+++..++   .|+++|+||+|+.
T Consensus        83 ~~ad~il~v~D~~~-~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~  128 (178)
T d1wf3a1          83 ADVNAVVWVVDLRH-PPTPEDELVARALKPLVGK---VPILLVGNKLDAA  128 (178)
T ss_dssp             SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGC
T ss_pred             ccccceeeeechhh-hhcccccchhhheeccccc---hhhhhhhcccccc
Confidence            58999999987754 3566666667776654332   6999999999985

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=9.3e-18  Score=126.58  Aligned_cols=123  Identities=19%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNK  118 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~~~  118 (243)
                      +||+++|.+|+|||||+|+|+|.+...+...++++...........+.++.++||||+.+....... ..+....+  ..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~--~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE--IE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--HH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHH--HH
Confidence            7999999999999999999999987667777777777777777888999999999999875443322 11112222  25


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+|+++++++.......+....+.+.+.. ...  ..|+++|+||+|+.
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~--~~~iilv~NK~Dl~  125 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPA--KLPITVVRNKADIT  125 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCT--TCCEEEEEECHHHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh-ccc--ccceeeccchhhhh
Confidence            89999999877654332323333333333 332  36999999999985

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=1.1e-16  Score=123.56  Aligned_cols=122  Identities=22%  Similarity=0.337  Sum_probs=83.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---------cHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---------NYHA  107 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~---------~~~~  107 (243)
                      ...+||+++|.+|+|||||+|+|+|.+...+...+.++.........+++..+.++||||+......         ....
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            3579999999999999999999999987777777777766666677788999999999998643211         1122


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      .+.+      ..+|++++|++.+. ........++..+...     ..|+|+|+||+|+....
T Consensus        86 ~~~~------~~~dvii~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~i~v~nK~D~~~~~  136 (186)
T d1mkya2          86 VDSI------EKADVVVIVLDATQ-GITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHR  136 (186)
T ss_dssp             HHHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTG
T ss_pred             HHHH------hcCCEEEEeecccc-cchhhHHHHHHHHHHc-----CCceeeeccchhhhcch
Confidence            2233      37899999977653 2455555555555443     36999999999986443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.4e-17  Score=139.46  Aligned_cols=118  Identities=19%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc----CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI  111 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~  111 (243)
                      ...+++|+++|++|+|||||+|+|+|.......    ....+|.....+. ..++.++.+|||||++......++..+..
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence            346899999999999999999999996532221    2223444443333 23455799999999987665544433222


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                          ....+|++|++  .+. ++++.+..+++.+.+.     .+|+++|+||+|.
T Consensus       132 ----~~~~~d~~l~~--~~~-~~~~~d~~l~~~l~~~-----~k~~~~V~nK~D~  174 (400)
T d1tq4a_         132 ----KFYEYDFFIII--SAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDS  174 (400)
T ss_dssp             ----TGGGCSEEEEE--ESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHH
T ss_pred             ----hhhcceEEEEe--cCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCccc
Confidence                22468899888  443 5788888888888764     3699999999985

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-16  Score=121.58  Aligned_cols=123  Identities=14%  Similarity=0.064  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++.+.+.....   ..+++..........++  ..+.+|||||..+......       .++  
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~-------~~~--   69 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP---EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPG-------HCM--   69 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC-------CHH-------HHH--
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC---cCCeeeeeecceeeccccccceeeeecccccccceecc-------cch--
Confidence            699999999999999999999876321   12222222233344555  4788999999854432221       122  


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      .++|++++|++++.....+....|+..+....+. ...|+++|+||+|+.+....+..
T Consensus        70 ~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~  126 (168)
T d2gjsa1          70 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRSREVSVD  126 (168)
T ss_dssp             TSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHH
T ss_pred             hhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhhcchhHH
Confidence            4899999999987644334445666666655442 23699999999999755444443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.8e-16  Score=118.92  Aligned_cols=126  Identities=20%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++++...  .....++...........++.  .+.+|||+|....   .......+     
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~~-----   71 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTF--RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF---PAMQRLSI-----   71 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCC--CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC---HHHHHHHH-----
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCC--CCccCcceeeccccceeeccccceeccccccccccc---cccccccc-----
Confidence            58999999999999999999998763  222222222333333445554  6788999998543   22222222     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                       ..+|++++|++++..........+...+.+..+.....|+++|+||+|+.+.+..+.+
T Consensus        72 -~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~  129 (171)
T d2erxa1          72 -SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS  129 (171)
T ss_dssp             -HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH
T ss_pred             -cceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHH
Confidence             3789999999987543333345566666665554445799999999998755555544

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.8e-16  Score=119.36  Aligned_cols=127  Identities=23%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      .+.+||+++|.+|+|||||++++++...  .....++...........++.  .+.+|||+|..+......   ..++  
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~---~~~~--   76 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE---QYMR--   76 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHH---HHHH--
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCC--CcccccccccceeeEeccCCeeeeeeccccccccccccccc---hhhc--
Confidence            3579999999999999999999997652  233333333444444555654  678899999976544332   2333  


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                          ++|++++|++++.....+....+...+.+..+.. ..|+++|+||+|+...+....+
T Consensus        77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~~~~~~~  132 (173)
T d2fn4a1          77 ----AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRS  132 (173)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGGGCCSCHH
T ss_pred             ----cceeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhhccccchh
Confidence                7899999998875433344455666665554322 2599999999998644444433

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=9.9e-17  Score=123.37  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH----HHHHH-
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL----IKRFL-  115 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~----~~~~~-  115 (243)
                      .|+++|.+|+|||||+|+|+|.++ .++..+++|......  .+  ..+.++||||++..........+.    +..+. 
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~~--~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEI--EW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEE--EE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCEeeccccc--cc--ccceecccCCceeccccccccccccchhhhhhhh
Confidence            689999999999999999999886 466777777664332  23  347789999987655544332222    22222 


Q ss_pred             -hcCCCcEEEEEEeCCC----------cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 -LNKTIDVLLYVDRLDV----------YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 -~~~~~~~il~v~~~d~----------~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ....+|++++|++...          ......+...++.+.+.     ..|+++|+||+|+.
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~  134 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKI  134 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehh
Confidence             2357899999965431          01233444555555442     37999999999975

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.8e-16  Score=118.94  Aligned_cols=124  Identities=16%  Similarity=0.106  Sum_probs=84.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||+|++++... .....++.+...........+  ..+.+|||||..+.......   .+     
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~-~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---~~-----   72 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA---YY-----   72 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH---HH-----
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhh---hh-----
Confidence            48999999999999999999996652 222223333333333444444  47899999998766554432   22     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                       .++|++++|++++.....+....|++.+.+..+.   .|+++|+||+|+...+..+.+
T Consensus        73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~~~v~~~  127 (164)
T d1z2aa1          73 -RGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKNE  127 (164)
T ss_dssp             -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCHH
T ss_pred             -ccCceEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccceeeeeh
Confidence             4899999999986544334455677777665543   699999999998755544444

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=4e-16  Score=118.86  Aligned_cols=119  Identities=20%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~~~~  118 (243)
                      +|+++|.+|+|||||+|+|+|.....++..++.|...........+..+.++||||+.+.....  ..........+  .
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--R   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--T
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccc--c
Confidence            6899999999999999999998876667777777766666777888899999999987654322  22222223223  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+|+++++.+.+. .....+..++..+.+. +    .|+++|+||+|+.
T Consensus        80 ~ad~i~~~~~~~~-~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~  122 (171)
T d1mkya1          80 EADLVLFVVDGKR-GITKEDESLADFLRKS-T----VDTILVANKAENL  122 (171)
T ss_dssp             TCSEEEEEEETTT-CCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred             cCcEEEEeecccc-cccccccccccccccc-c----ccccccchhhhhh
Confidence            8899999976653 3556666666666543 2    6999999999984

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.2e-16  Score=122.78  Aligned_cols=122  Identities=17%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE-EEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNK  118 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~~~  118 (243)
                      .|+++|.+|+|||||+|+|+|...... ..+..+..... ......+..+.+|||||+.+....... ....++. +  .
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~-~--~   78 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA-PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH-I--A   78 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC-CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH-H--T
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee-ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHH-H--H
Confidence            489999999999999999999876433 33444444433 333445678999999998754322111 1112221 1  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+++++++++.... .......+..++.........+|+++|+||+|+.
T Consensus        79 ~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          79 RTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             SSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             hhhhhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            88999999766432 2223333333333322223347999999999986

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-16  Score=120.51  Aligned_cols=122  Identities=15%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++++... .....++.+..........++.  .+.+|||||..+.......   .+      
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~---~~------   74 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA---YY------   74 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHH---HH------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHH---Hh------
Confidence            7999999999999999999998763 2222233333333344445553  7889999998654443332   22      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      ..++++++|++++.........+++..+.+..+.+  .|+++|+||+|+.+.+...
T Consensus        75 ~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~~~~~  128 (175)
T d2f9la1          75 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVP  128 (175)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSC
T ss_pred             hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeecccccccch
Confidence            48999999988865443344556677777666544  5999999999986444433

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1e-15  Score=115.99  Aligned_cols=124  Identities=16%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||++++++... .....+..+..........++.  .+.+|||||..+..   ......+     
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---~~~~~~~-----   74 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---AVTRSYY-----   74 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---HHHHHHH-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC-CCcccccccccceeEEEEECCEEEEEEEeccCCchhHH---HHHHHHh-----
Confidence            37999999999999999999997763 2222233333333444455554  78899999985432   1122223     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                       ..+|++++|+++++....+....++..+.......  .|+++|+||+|+.+......
T Consensus        75 -~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~  129 (166)
T d1z0fa1          75 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTY  129 (166)
T ss_dssp             -HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCH
T ss_pred             -cCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhhcccHH
Confidence             38999999999876443334455666665554433  58999999999865444443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.9e-16  Score=116.15  Aligned_cols=127  Identities=20%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.+||+++|.+|+|||||++++++...  .....++...........++.  .+.+|||+|..........   .+    
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~---~~----   73 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT---YS----   73 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCC--CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGG---GT----
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCC--CcccCcceecccceEEecCcEEEEeeecccccccccccccch---hh----
Confidence            568999999999999999999987652  222222222222334455654  6788999999766544332   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                        ..+|++++|++++.....+.-..++..+.+..+.. ..|+++|+||+|+...+..+.++
T Consensus        74 --~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~~  131 (167)
T d1xtqa1          74 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYEE  131 (167)
T ss_dssp             --SSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHHH
T ss_pred             --hhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHHH
Confidence              48999999999876543344556666666665532 26999999999987555555554

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-15  Score=115.35  Aligned_cols=126  Identities=17%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +++||+++|.+|+|||||++++++...  .....++...........++  ..+.+|||+|.....   ......+    
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---~~~~~~~----   72 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---SMRDLYI----   72 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HHHHHHH----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCC--CCccCCceeeeeeeeeecCcceEeeccccCCCccccc---cchHHHh----
Confidence            579999999999999999999997763  22222233233333344444  478889999985432   1222222    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        .++|++++|++++..........+...+...... ...|+++|+||+|+...+....+
T Consensus        73 --~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~  129 (167)
T d1kaoa_          73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS  129 (167)
T ss_dssp             --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH
T ss_pred             --hcccceeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchhhcccchHH
Confidence              3789999999887644334445555555544332 23689999999998655444443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.5e-15  Score=115.52  Aligned_cols=127  Identities=17%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++.+++... .....+ +...........++  ..+.+|||+|.........   ..++   
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~---~~~~---   74 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIF-VPDYDP-TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE---QYMR---   74 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSC-CTTCCT-TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHH---HHHH---
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCC-CcccCc-ceeeccccccccccccccccccccccccccccchh---hhhh---
Confidence            469999999999999999999997653 222222 22222222333444  4788999999965544332   2333   


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                         ++|++++|++++.......-..|+..+.+..+.. ..|+++|+||+|+...+..+.++
T Consensus        75 ---~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~e~  131 (169)
T d1x1ra1          75 ---TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHLRKVTRDQ  131 (169)
T ss_dssp             ---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCSTTCCSCHHH
T ss_pred             ---hccEEEEecccccchhhhccchhhHHHHhhcccc-CccEEEEecccchhhhceeehhh
Confidence               8899999999875443344566777776665432 36899999999997665655554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=1.4e-16  Score=119.82  Aligned_cols=115  Identities=26%  Similarity=0.380  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC--Cc----HHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY--VN----YHAIQLIKR  113 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~--~~----~~~~~~~~~  113 (243)
                      +||+++|.+|+|||||+|+|+|.+...++..+.++...........+..+.++||||+.....  .+    ....+.+  
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~--   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI--   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH--
Confidence            689999999999999999999988777777777777777777788899999999999764322  11    1222222  


Q ss_pred             HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                          ..+|++++|++.+.. ....+..+...+    .   ..++++++||.|+.+
T Consensus        79 ----~~ad~ii~v~d~~~~-~~~~~~~~~~~~----~---~~~~i~~~~k~d~~~  121 (160)
T d1xzpa2          79 ----EKADIVLFVLDASSP-LDEEDRKILERI----K---NKRYLVVINKVDVVE  121 (160)
T ss_dssp             ----HHCSEEEEEEETTSC-CCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred             ----HhCCEEEEEEeCCCC-cchhhhhhhhhc----c---cccceeeeeeccccc
Confidence                378999999777642 333333333222    2   258999999999863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=8.7e-16  Score=116.81  Aligned_cols=125  Identities=17%  Similarity=0.123  Sum_probs=78.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||++++++... .....+..+...........+  ..+.+|||||..+.        ..++.. .
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~--------~~~~~~-~   74 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSF-TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY--------RTITTA-Y   74 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHT-T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCC-CcccccccccceeeEEEEeecceEEEEEEECCCchhh--------HHHHHH-H
Confidence            38999999999999999999987653 222222233233333333443  47899999997421        122221 1


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..++|++|+|++++..........+...+......  ..|+++|+||+|+......+.+
T Consensus        75 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~v~~~  131 (169)
T d3raba_          75 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSSE  131 (169)
T ss_dssp             TTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS--CCEEEEEEECTTCGGGCCSCHH
T ss_pred             HhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC--cceEEEEEeecccccccccchh
Confidence            25899999998886543223334444444444333  2589999999998654444444

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.7e-15  Score=114.20  Aligned_cols=127  Identities=20%  Similarity=0.155  Sum_probs=80.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.+||+++|.+|+|||||++++++...  .....++...........++.  .+.+|||+|..+...   .....++   
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~---   75 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA---MREQYMR---   75 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCH---HHHHHHH---
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCC--CcccCcccccceeeeeeecccccccccccccccccccc---ccccccc---
Confidence            569999999999999999999997652  222233333344444455554  799999999865432   2222232   


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                         ++|++++|++++.....+....+...+.+..+.. ..|+++|+||+|+...+..+.++
T Consensus        76 ---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~~~  132 (171)
T d2erya1          76 ---TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQRQVTQEE  132 (171)
T ss_dssp             ---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSCSSCHHH
T ss_pred             ---ccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhccchHHH
Confidence               7899999988865433334455665555554432 36899999999986554555443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.65  E-value=8.9e-16  Score=117.22  Aligned_cols=127  Identities=20%  Similarity=0.225  Sum_probs=81.5

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      .+++.+....+++||+++|.+|+|||||+|+|.+........    +...........+..+.+||+||....   ... 
T Consensus         5 ~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~i~~~~~~~~i~d~~g~~~~---~~~-   76 (176)
T d1fzqa_           5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI---RPY-   76 (176)
T ss_dssp             HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG---HHH-
T ss_pred             HHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee----eeeeeEEEeccCCeeEeEeeccccccc---hhH-
Confidence            344555555578999999999999999999999887433222    112233445667889999999998432   112 


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                         ...++  ..+|++++|++++..........++..+..... ....|+++|+||+|+.+
T Consensus        77 ---~~~~~--~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~  131 (176)
T d1fzqa_          77 ---WRSYF--ENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLT  131 (176)
T ss_dssp             ---HHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTT
T ss_pred             ---HHHHh--hccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEeccccc
Confidence               22222  589999999887643222222333333332222 12369999999999963

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=115.19  Aligned_cols=124  Identities=13%  Similarity=0.115  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|++++.+. .....++.+..........++  ..+.+|||||........   ...+      
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~---~~~~------   70 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI---PSYI------   70 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGH---HHHH------
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCC-CCccccceeeeccceeeccCCCceeeeecccCCcchhccch---HHHh------
Confidence            5899999999999999999997763 222223333333333333444  478899999985432211   1122      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..++++++|++++.....+....++..+....+.+  .|+++|+||+|+.+......+
T Consensus        71 ~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~  126 (164)
T d1yzqa1          71 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIE  126 (164)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHH
T ss_pred             hccceEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhhhhhhHH
Confidence            48999999998865443344556666666655443  589999999998655555443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.64  E-value=2.7e-15  Score=114.02  Aligned_cols=126  Identities=16%  Similarity=0.145  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||+|++++...  ...+.++...........++.  .+.+|||||..+..   ......+     
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~---~~~~~~~-----   73 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AIRDNYF-----   73 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---HHHHHHH-----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC--CcccCCccccccccccccccccccccccccccccchh---hhhhhcc-----
Confidence            47999999999999999999987652  222222222222333445554  78899999995431   1112222     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                       .++|++++|++++.....+....|++.+.+..+. ...|+++|+||+|+...+..+.++
T Consensus        74 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~~~  131 (168)
T d1u8za_          74 -RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE  131 (168)
T ss_dssp             -HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH
T ss_pred             -cccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccHHH
Confidence             2789999998886543334445666666655432 236899999999986544555443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=116.24  Aligned_cols=125  Identities=16%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||++++++... .....+..+...........+.  .+.+|||||....        ..+... .
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~--------~~~~~~-~   74 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF--------RSITQS-Y   74 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHGG-G
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC-CCcccccccceEEEEEEEECCEEEEEEEEECCCchhh--------HHHHHH-H
Confidence            38999999999999999999997763 3333333444444444555554  5788999997321        112211 1


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..+++++++|++++.....+....+...+......  ..|+++|+||+|+.+....+.+
T Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~ilvgnK~D~~~~~~v~~~  131 (171)
T d2ew1a1          75 YRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQ  131 (171)
T ss_dssp             STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHH
T ss_pred             HhccceEEEeeecccchhhhhhhhhhhhhcccccc--cccEEEEEeecccccccchhhh
Confidence            25899999998876543333445555555554333  3589999999998644444443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.1e-15  Score=113.64  Aligned_cols=125  Identities=13%  Similarity=0.122  Sum_probs=78.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++||+++|.+|+|||||++++++...  ...+.++...........++  ..+.+|||+|.....    .....++    
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~~~~----   71 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRF--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI----QREGHMR----   71 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH----HHHHHHH----
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeccccccccccccceEEEEeecccccccc----cchhhhc----
Confidence            58999999999999999999998652  22222222222233334455  478999999985431    1122232    


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                        ++|++++|++++..........+.+....... ....|+++|+||+|+.+.+..+.++
T Consensus        72 --~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e  128 (168)
T d2atva1          72 --WGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE  128 (168)
T ss_dssp             --HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred             --ccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHH
Confidence              78999999988754322333344444433332 2236999999999996555555543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.9e-15  Score=114.61  Aligned_cols=126  Identities=15%  Similarity=0.069  Sum_probs=81.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +++||+++|.+|+|||||++++.+... .....++.............+  ..+.+|||+|..........   .+    
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---~~----   74 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSF-DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPM---YY----   74 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHH---HH----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccccccccccccccceeeeecCCchhhhHHHHH---HH----
Confidence            579999999999999999999997763 222222222222222222333  36789999998654433221   12    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                        .++|++++|++++.....+....+...+......  ..|+++|+||+|+.+.+..+.+
T Consensus        75 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~~~  130 (167)
T d1z0ja1          75 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVREVMER  130 (167)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGCCSCHH
T ss_pred             --hhccceEEEeeechhhhhhhHHHhhhhhhhccCC--cceEEEecccchhccccchhHH
Confidence              4899999999887544334445555555555443  3699999999999654454443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.63  E-value=3.6e-15  Score=112.64  Aligned_cols=115  Identities=19%  Similarity=0.229  Sum_probs=74.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.+||+++|.+|+|||||+|+|.+.....    ...|...........+..+.+|||||....       ......  ..
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~--~~   67 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDT----ISPTLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRN--YF   67 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSS----CCCCSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGG--GC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCc----ccceEeeeeeeccccccceeeeecCcchhh-------hhHHHh--hh
Confidence            36899999999999999999999876421    122444445566788899999999997311       111111  12


Q ss_pred             CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..++++++|++..... +.+....+...+.....  ...|+++|+||+|+.
T Consensus        68 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~  116 (165)
T d1ksha_          68 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL--AGATLLIFANKQDLP  116 (165)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTST
T ss_pred             hhhhcceeeeecccchhHHHHHHhhhhhhhhccc--CCCceEEEEeccccc
Confidence            5899999998865432 22222222222222211  236999999999985

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=4.3e-15  Score=115.48  Aligned_cols=125  Identities=19%  Similarity=0.158  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|..|+|||||++.+++... .....++.+...........+  ..+.+|||||..+.......   .+      
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~---~~------   76 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS---YY------   76 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG---GG------
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCC-CCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHH---Hh------
Confidence            8999999999999999999997652 222223333322333344444  47889999998765443321   12      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                      ..+|++|+|++++..........+...+.+....  ..|+++|+||+|+.+......++
T Consensus        77 ~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~  133 (194)
T d2bcgy1          77 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYDV  133 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHH
T ss_pred             ccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccC--CceEEEEEeccccccccchhHHH
Confidence            4899999998886543223334444445444333  36999999999987555554443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.1e-15  Score=111.37  Aligned_cols=125  Identities=16%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +++||+++|.+|+|||||++++++...  .....++...........  ....+.+||++|........   ...+    
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---~~~~----   72 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR---DLYM----   72 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHH---HHHH----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccccceeEEeeeeEEEeccccccCcccccccc---cccc----
Confidence            578999999999999999999997763  222222222222222223  33479999999996543322   1233    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  174 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~  174 (243)
                        .++|++++|++++.....+....++..+.+..+. ...|+++|+||+|+......+.
T Consensus        73 --~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~  128 (167)
T d1c1ya_          73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGK  128 (167)
T ss_dssp             --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCH
T ss_pred             --cccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccch
Confidence              2789999999987644444555666666665442 2369999999999864444443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.7e-15  Score=113.09  Aligned_cols=122  Identities=15%  Similarity=0.098  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++++.+..... .+..+...........+  ..+.+|||+|........+.   .+      
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---~~------   73 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS---YY------   73 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH---HH------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCc-ccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHH---Hh------
Confidence            79999999999999999999977632222 22233333333333343  47899999999766554432   22      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      ..+|++++|++++.....+.-..++..+.+..+.+  .|+++|+||+|+.......
T Consensus        74 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~~~~~~  127 (173)
T d2a5ja1          74 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVK  127 (173)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSC
T ss_pred             hccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhhhhhhH
Confidence            48999999999876443344556666666655544  5999999999986444433

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.2e-15  Score=112.57  Aligned_cols=118  Identities=21%  Similarity=0.188  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +++||+++|.+|||||||+|++++...  .....++............+  ..+.+||++|.....   ......+    
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~----   72 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---AMRDQYM----   72 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH---HHHHHHH----
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCC--CCccCCccceeeccceeeeceeeeeeeeeccCccccc---cchhhhh----
Confidence            468999999999999999999998762  22222222222222333343  468899999985331   1111122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .+++++++|++++.....+....|+..+.+..+.. ..|+++|+||+|+.
T Consensus        73 --~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~  121 (166)
T d1ctqa_          73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLA  121 (166)
T ss_dssp             --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCS
T ss_pred             --hcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccc
Confidence              37899999988876544455667777777765432 26999999999985

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-15  Score=113.81  Aligned_cols=126  Identities=17%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++++... .....+.............++  ..+.+|||+|..+......       .+  
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~~--   72 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGP-------IY--   72 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------C-------CS--
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccchheeeeccCCccceeeeeccCCcceecccch-------hh--
Confidence            47999999999999999999997663 222223233233333334444  4789999999864322211       11  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                      ..++|++++|++++.....+....+++.+.......  .|+++|+||+|+...+..+.++
T Consensus        73 ~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~~~v~~~e  130 (167)
T d1z08a1          73 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE  130 (167)
T ss_dssp             STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH
T ss_pred             ccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccccccchHH
Confidence            158999999998865432234445555555544433  5899999999987555555443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.9e-15  Score=113.14  Aligned_cols=126  Identities=13%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++++.........+..+...........+.  .+.+|||||........       ..++ 
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~-------~~~~-   77 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT-------HAYY-   77 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG-
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHH-------HHhh-
Confidence            4899999999999999999998765322222222233344444555664  68899999985432211       1111 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                       .++|++++|++++..........+...+....+.  ..|+++|.||+|+......+.+
T Consensus        78 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~d~~~~~~v~~~  133 (170)
T d2g6ba1          78 -RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVKRE  133 (170)
T ss_dssp             -GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSCHH
T ss_pred             -cCCceeEEEecCCcccchhhhhhhhhhhhhccCC--CceEEEEEeeechhhcccccHH
Confidence             4899999998886533222233333334444333  3589999999998755555544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.1e-15  Score=113.04  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=81.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++.+++... .....++.+...........+  ..+.+|||||.........   ..+    
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~----   76 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQF-HEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP---MYY----   76 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHH---HHH----
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccccceeeccceEEEEEeccCCCchhhhhhHH---HHh----
Confidence            358999999999999999999997653 222223333333333333443  4789999999854322211   122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                        .+++++++|++++.....+....+...+.+....+  .|+++|+||+|+...+..+.++
T Consensus        77 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~e~  133 (170)
T d1r2qa_          77 --RGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQE  133 (170)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH
T ss_pred             --hCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeecccccccccccccHHH
Confidence              48999999988765433333445555555554443  5899999999987555555443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-14  Score=110.84  Aligned_cols=129  Identities=14%  Similarity=0.065  Sum_probs=80.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||+|.+++.........++............++.  .+.+||+||...     .+  +.+... .
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g-----~e--~~~~~~-~   74 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-----EN--EWLHDH-C   74 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-----HH--HHHHHC-C
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccc-----cc--cccccc-c
Confidence            4899999999999999999999876433333333333333344445554  578999887521     11  112221 2


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                      ..++|++++|++++.....+....+...+....+. ...|+++|+||+|+.+.+..+.++
T Consensus        75 ~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~~  133 (172)
T d2g3ya1          75 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRCREVSVSE  133 (172)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCGGGCCSCHHH
T ss_pred             ccccceeeeeecccccchhhhhhhhhhhhhhcccc-CCceEEEEeccccccccccccHHH
Confidence            25899999999887543223334444444443322 236999999999987555555443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.9e-15  Score=112.99  Aligned_cols=123  Identities=17%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||+|++.+... .....++............++  ..+.+|||||....   .     .+.+. .
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~-----~~~~~-~   74 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF---R-----SVTRS-Y   74 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG---H-----HHHHT-T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccceeeEEEEecCcceeEEEEECCCchhh---h-----hhHHH-H
Confidence            38999999999999999999987653 222222222222222222333  47899999997421   1     12211 1


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                      ..+++++++|++++..........++..+....+.+  .|+++|+||+|+.......
T Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~~~~~  129 (174)
T d2bmea1          75 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVT  129 (174)
T ss_dssp             STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSC
T ss_pred             hhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccchhchh
Confidence            258999999988875433333445555555554443  6999999999985443433

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.4e-15  Score=114.54  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|.+|+|||||++++++... . ....++............+  ..+.+|||+|..........   .+    
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~-~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~---~~----   78 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAF-P-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---SY----   78 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSC-C-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG---GC----
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCC-C-CcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhh---cc----
Confidence            458999999999999999999997652 2 2222222233333333344  46889999999654433221   11    


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        .++|++++|++++... +......+...+... ..  ..|+++|+||+|+.
T Consensus        79 --~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~--~~~~ilvgnK~Dl~  126 (185)
T d2atxa1          79 --PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPFLLIGTQIDLR  126 (185)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TCCEEEEEECTTST
T ss_pred             --cccceeeeccccchHHHHHHHHHHHHHHHHhc-CC--CCCeeEeeeccccc
Confidence              4899999999987543 323333445445443 32  26999999999986

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.59  E-value=8.4e-15  Score=110.61  Aligned_cols=116  Identities=14%  Similarity=0.130  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ++||+++|.+|+|||||+|.+.+... .....+  |...........+..+.+|||||...       .......++  .
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~-~~~~~~--T~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~   69 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC--R   69 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCC--CCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH--T
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCC-CCcccc--cceeeeeeeeeeeEEEEEeecccccc-------ccccccccc--c
Confidence            68999999999999999999987663 222222  33334445567888999999999632       111222233  5


Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++|++++|++++..........++..+.+... ....|+++|+||.|+.
T Consensus        70 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~lv~nK~Dl~  117 (164)
T d1zd9a1          70 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP  117 (164)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             ccchhhcccccccccccchhhhhhhhhhhhhc-ccCCcEEEEEeccccc
Confidence            89999999887643222223333333332221 1236999999999985

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-15  Score=115.07  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||++++++... .....++.+..........++  ..+.+|||||........+       .+  
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~-------~~--   72 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD-------GY--   72 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGG-------GG--
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCC-Ccccccceeccccccccccccccccccccccccccccceecc-------hh--
Confidence            47999999999999999999987762 222222222222223333333  5799999999743332221       11  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  169 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~  169 (243)
                      ..++|++++|++++.....+....++..+.+...   ..|+++|+||+|+...
T Consensus        73 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          73 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             TTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC---SCCEEEEEECCCCSCS
T ss_pred             cccccchhhccccccccccchhHHHHHHHhhccC---CCceeeecchhhhhhh
Confidence            1589999999998765433445566666665543   3699999999998643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=2.4e-15  Score=115.84  Aligned_cols=120  Identities=18%  Similarity=0.252  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHH
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFL  115 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~~  115 (243)
                      +|+++|++|||||||+|+|+|.... +...+..|......... .++..+.+|||||+.+.....    ....+.+.   
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~---   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE---   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH---
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH---
Confidence            6899999999999999999998864 44445555554444333 456789999999975322222    22222222   


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHH-HHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQ-ITRAITDNFGE-QIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~-~l~~l~~~~~~-~~~~~~ivV~tk~D~~  167 (243)
                         .++++++++...... ....+.. ........+.. ...+|+++|+||+|+.
T Consensus        79 ---~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~  130 (185)
T d1lnza2          79 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  130 (185)
T ss_dssp             ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             ---HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchH
Confidence               567887776543322 2222222 22222222222 2347899999999985

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4.8e-15  Score=113.04  Aligned_cols=119  Identities=14%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      +||+++|.+|+|||||+|++++..... ...+..+..........   ....+.+|||||..+.....       ..  .
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~~--~   72 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG-------VA--F   72 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------C--C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCC-ccCcccccceeeeeeeecCcccccceeeccCCchhhhhHH-------HH--H
Confidence            799999999999999999999776322 21222222222222222   23468999999975332111       11  1


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc--ccccEEEEEeCCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSL  168 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~~  168 (243)
                      ...++++++|++++.....+....|+..+.+.....  ...|+++|+||+|+.+
T Consensus        73 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~  126 (175)
T d1ky3a_          73 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  126 (175)
T ss_dssp             STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             hhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhh
Confidence            258999999988865433344566777776655421  2369999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.57  E-value=5.9e-15  Score=112.46  Aligned_cols=117  Identities=16%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.+||+++|.+|+|||||++++.+......  .+  |..............+.+|||||....   ..    ....+  
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~---~~----~~~~~--   76 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT--IP--TVGFNVETVTYKNVKFNVWDVGGQDKI---RP----LWRHY--   76 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE--EE--ETTEEEEEEEETTEEEEEEEESCCGGG---HH----HHGGG--
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc--cc--eeeeeEEEeeccceeeEEecCCCcchh---hh----HHHhh--
Confidence            4689999999999999999999987763221  11  223334455667789999999998432   11    11112  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...++++++|++.+..........++..+.+.. .....|+++|+||+|+.
T Consensus        77 ~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~-~~~~~piiiv~NK~Dl~  126 (173)
T d1e0sa_          77 YTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLP  126 (173)
T ss_dssp             TTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTST
T ss_pred             hcccceEEEEEecccchhHHHHHHHHHHHhhhc-ccccceeeeeeeccccc
Confidence            258999999988765332222222332222211 11236999999999985

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.2e-14  Score=107.31  Aligned_cols=128  Identities=11%  Similarity=0.090  Sum_probs=80.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||++.+++...... ..+..+.........  .....+.+||++|........      ...++ 
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-   73 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM------VQHYY-   73 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT------HHHHH-
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc-cCcccccccceeeeeeeccceEEEEEeccCchhhcccc------ceeee-
Confidence            48999999999999999999997763222 222222222222222  334578999999974221111      12222 


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  176 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~  176 (243)
                       .++|++++|++++.....+.-..++..+.+.... ...|+++|+||+|+.++...+.++
T Consensus        74 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~  131 (165)
T d1z06a1          74 -RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDL  131 (165)
T ss_dssp             -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHH
T ss_pred             -cCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHH
Confidence             4899999999987543333345566666665442 236999999999997555555443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.57  E-value=6.2e-15  Score=113.22  Aligned_cols=117  Identities=14%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+.+||+++|.+|||||||++.+.+.......  +  |...........+..+.+|||||..........   .+     
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~-----   82 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTK--P--TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC---YY-----   82 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC--S--STTCCEEEEEETTEEEEEEEEC----CCTTGGG---TT-----
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccc--c--ccceEEEEEeeCCEEEEEEecccccccchhHHh---hh-----
Confidence            46899999999999999999999877643222  2  333334555678889999999999654433221   11     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++.+..........++..+..... ....|+++|+||+|+.
T Consensus        83 -~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~  131 (182)
T d1moza_          83 -ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP  131 (182)
T ss_dssp             -TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred             -ccceeEEEEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccc
Confidence             489999999887653322223333333222211 1236999999999985

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.3e-14  Score=113.41  Aligned_cols=120  Identities=16%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      ..+|+++|.+|||||||+|+|++....     +.+|...........+..+.+|||||.....   ......+....  .
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~~--~   72 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR---YKLSDYLKTRA--K   72 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGT---HHHHHHHHHHG--G
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccchh---hHHHHHHHHHh--h
Confidence            358999999999999999999988642     2344444555667788899999999985432   22233333222  3


Q ss_pred             CCcEEEEEEeCCC-cccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCC
Q 026113          119 TIDVLLYVDRLDV-YRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       119 ~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~  168 (243)
                      ..+.++++++... ....+....++..+.....  .....|+++|+||+|+..
T Consensus        73 ~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          73 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             hccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            5567777755432 2223333444433222211  122369999999999863

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.1e-15  Score=112.44  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=73.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ..||+++|.+|+|||||++++.+...  .....++............+  ..+.+|||||..........   .+     
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~---~~-----   71 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPL---SY-----   71 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG---GC-----
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCC--CCCcCCceeeeccccccccccceeeeccccCccchhcccchh---hc-----
Confidence            46999999999999999999997763  22222221122222233444  37999999998644333221   11     


Q ss_pred             cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       .++|++++|++++... +......+...+... +.  ..|+++|+||+|+.
T Consensus        72 -~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~piilvgnK~Dl~  119 (177)
T d1kmqa_          72 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP--NVPIILVGNKKDLR  119 (177)
T ss_dssp             -TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECGGGT
T ss_pred             -ccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CC--CCceEEeeeccccc
Confidence             4899999999887543 333333444444443 33  36999999999985

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=5e-15  Score=112.92  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      -+||+++|.+|+|||||++++++... .....+..+..........++.  .+.+|||||..........       +  
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~-------~--   75 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------Y--   75 (173)
T ss_dssp             EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCT-------T--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC-CCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHH-------h--
Confidence            37999999999999999999997653 2222222233333444555554  6778999998544322211       1  


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..++|++++|++++.....+....+...+......+  .|+++|+||+|.........+
T Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~~~~~~  132 (173)
T d2fu5c1          76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKE  132 (173)
T ss_dssp             TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHH
T ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhcccHHH
Confidence            158999999988765322233344445554443333  689999999998755444443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=109.38  Aligned_cols=124  Identities=18%  Similarity=0.102  Sum_probs=78.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|..|+|||||+|++.+... .....+..+...........+  ..+.+|||||..+.....+.   .+    
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~----   77 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPS---YY----   77 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHH---HH----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCC-CCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHH---HH----
Confidence            468999999999999999999998763 222222233333333344444  46999999998654432221   22    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  173 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~  173 (243)
                        .++|++++|++++.....+....++..+.+. ......+++++.||.|.. ....+
T Consensus        78 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~-~~~v~  131 (177)
T d1x3sa1          78 --RGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKE-NREVD  131 (177)
T ss_dssp             --TTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSS-SCCSC
T ss_pred             --hcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccc-ccccc
Confidence              5899999998876533223334444444332 223346899999999975 33443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.6e-14  Score=113.17  Aligned_cols=116  Identities=11%  Similarity=0.033  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc----------ccc-cC-----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKA----------VTV-ST-----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG  101 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~----------~~~-~~-----~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~  101 (243)
                      ++++|+++|..++|||||+++|+...-          +.. ..     ..+.|.........++++.+.++||||..+. 
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df-   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh-
Confidence            469999999999999999999973210          000 11     1134555556677899999999999998532 


Q ss_pred             CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        -.+    +.+.+  ..+|++|+|++.+. -......+.+...... |-   +++++++||+|+.
T Consensus        81 --~~~----~~~~~--~~aD~avlVvda~~-Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~  133 (204)
T d2c78a3          81 --IKN----MITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-GV---PYIVVFMNKVDMV  133 (204)
T ss_dssp             --HHH----HHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGC
T ss_pred             --HHH----HHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEecccC
Confidence              222    22222  48999999977753 3444444545444443 31   4588889999985

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2e-14  Score=108.62  Aligned_cols=116  Identities=20%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||++++++... .....++.+...........+.  .+.+|||||..........   .+      
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~------   72 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA---YY------   72 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHH---HH------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHH---HH------
Confidence            7999999999999999999998763 2222333333333444444554  6778999998655443322   22      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .+++++++|++++.....+....+...+......  ..+++++.+|.|+.
T Consensus        73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~  120 (166)
T d1g16a_          73 RGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME  120 (166)
T ss_dssp             TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCT
T ss_pred             hcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhh
Confidence            4899999998887643223333334444443332  35889999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=4.6e-14  Score=108.46  Aligned_cols=118  Identities=15%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+|+|.+|+|||||++.+++... .....++.+...........  ...+.+|||||..+.......   .+      
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~------   72 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA---FY------   72 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCG---GG------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccc---cc------
Confidence            7999999999999999999997663 22222222222222233333  347889999998654433321   11      


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                      ..+|++++|++++.......-..+++.+......  ....|+++|+||+|+.
T Consensus        73 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~  124 (184)
T d1vg8a_          73 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  124 (184)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             cCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc
Confidence            4899999998886533333445666666655432  1235899999999985

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=112.06  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ++.+||+++|.+|+|||||+|++++... . ....++...........++  ..+.+||++|..........   .+   
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f-~-~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~---   74 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL---SY---   74 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSC-C-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGG---GC---
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCC-C-cccccceeeceeeeeeccCcceEEEeecccccccchhhhhh---cc---
Confidence            3579999999999999999999997763 2 2222222222223333344  46889999998644333221   11   


Q ss_pred             HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         .++|++++|++++... +......+...+... ..  ..|+++|+||+|+.
T Consensus        75 ---~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~--~~piilvgnK~Dl~  122 (183)
T d1mh1a_          75 ---PQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CP--NTPIILVGTKLDLR  122 (183)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECHHHH
T ss_pred             ---cccceeeeeeccchHHHHHHHHHHHHHHHHHh-CC--CCcEEEEeecccch
Confidence               4899999999887543 323233345555443 22  36999999999985

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=112.00  Aligned_cols=125  Identities=14%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------CCeEEEEEeCCCCCCCCCCcHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------AGFTLNIVDTPGLIEGGYVNYH  106 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~viDTPG~~~~~~~~~~  106 (243)
                      -+||+++|.+|+|||||++++++.... ....+..+..........            ....+.+|||||..        
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e--------   75 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------   75 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCC-CccCCcccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence            389999999999999999999977631 111111111111111111            12468999999972        


Q ss_pred             HHHHHHH-HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113          107 AIQLIKR-FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       107 ~~~~~~~-~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..+.+.. ++  .++|++++|++++.....+....++..+..... ....|+++|+||+|+...+..+.+
T Consensus        76 ~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~v~~~  142 (186)
T d2f7sa1          76 RFRSLTTAFF--RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY-CENPDIVLIGNKADLPDQREVNER  142 (186)
T ss_dssp             HHHHHHHHHH--TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT-TTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             hhHHHHHHHH--hcCCEEEEEEeccccccceeeeeccchhhhhcc-CCCceEEEEeeeccchhhhcchHH
Confidence            2222222 33  589999999888643211222222222221111 122578999999999655555444

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=112.06  Aligned_cols=116  Identities=23%  Similarity=0.230  Sum_probs=74.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      +.+||+++|.+|+|||||++.+.+... . ....++............+  ..+.+|||+|..+.......   .     
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~---~-----   71 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKF-P-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL---S-----   71 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG---G-----
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCC-C-CCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhh---c-----
Confidence            368999999999999999999997663 2 2222222222223333444  37899999998654332221   1     


Q ss_pred             hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..++|++++|++++... +......+...+.. ...  ..|+++|+||+|+.
T Consensus        72 -~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~--~~~i~lvgnK~Dl~  120 (191)
T d2ngra_          72 -YPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCP--KTPFLLVGTQIDLR  120 (191)
T ss_dssp             -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCT--TCCEEEEEECGGGG
T ss_pred             -ccccceeecccccchHHHHHHHHHHHHHHHhh-cCC--CCceEEEecccccc
Confidence             14899999999987543 22222233433333 232  36999999999985

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.8e-14  Score=110.48  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      .+||+++|.+|+|||||+++++.... . ....++...........++  ..+.+|||+|..........   .      
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~------   70 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL---S------   70 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGG---G------
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC-C-CccCCceeecccccccccceEEeeccccccccccccccccc---h------
Confidence            47999999999999999999997753 2 2222222222223333344  46889999998544332211   1      


Q ss_pred             cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..++|++++|++++... +......+...+.. ...+  .|+++|+||+|+.
T Consensus        71 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~~iilVgnK~Dl~  119 (179)
T d1m7ba_          71 YPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPN--TKMLLVGCKSDLR  119 (179)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTT--CEEEEEEECGGGG
T ss_pred             hhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCCc--ceEEEEEeccccc
Confidence            15899999999986543 22222233333333 3333  6999999999985

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.5e-14  Score=106.36  Aligned_cols=114  Identities=17%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF  114 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~  114 (243)
                      ...+||+++|..|+|||||++++++... ..  ...++..........+|.  .+.+|||+|....        ..++  
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f-~~--~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~--------~~~~--   69 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSY-QV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA--------KFSG--   69 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCC-CC--CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH--------HHHH--
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCC-CC--cCCccceeEEEEeecCceEEEEEEeeccccccc--------cccc--
Confidence            3579999999999999999999998763 21  222233333334456664  6889999997421        1333  


Q ss_pred             HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc-ccccEEEEEeCCCCC
Q 026113          115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS  167 (243)
Q Consensus       115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~~  167 (243)
                          ++|++|+|++++.....+....|..++....... ...|+++|+||.|+.
T Consensus        70 ----~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          70 ----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             ----ccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence                7899999999876432334455666665543321 225899999998874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=7.5e-14  Score=105.84  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=75.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      ..+||+++|..|+|||||++++++..... ...++.+...........+  ..+.+|||+|........   ...+    
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~-~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~---~~~~----   73 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA---PMYY----   73 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH---HHHH----
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCc-cccccccceeeccccccccccccccccccCCchhHHHHH---HHHH----
Confidence            36899999999999999999999776322 2222222222233344444  479999999985432221   1122    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                        .++|++++|++++.....+....+...+......  ..++++|+||+|+.+
T Consensus        74 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~~  122 (170)
T d1ek0a_          74 --RNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDMLQ  122 (170)
T ss_dssp             --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             --hccceEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeeccccccc
Confidence              4899999998887543333344444444443333  368999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-13  Score=105.04  Aligned_cols=125  Identities=19%  Similarity=0.182  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +||+++|.+|+|||||+|.+++... .....++.............+  ..+.+|||+|..+..        .... ...
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~-~~~   76 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------SLRT-PFY   76 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH--------HHHG-GGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeeeeeeeeeeecCceeeEeeecccCcceeh--------hhhh-hhh
Confidence            6999999999999999999987652 222222222222233334444  367899999974321        1111 112


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCCCCCCCCHH
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDRLDYE  175 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~~~~~~~~~  175 (243)
                      ..+++++++++.+.....+....|++.+......  ....|+++|+||+|+. .+..+.+
T Consensus        77 ~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~  135 (174)
T d1wmsa_          77 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTE  135 (174)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHH
T ss_pred             hccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHH
Confidence            5899999998886543334455667666655432  1236899999999985 3344443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=1.7e-13  Score=106.19  Aligned_cols=119  Identities=20%  Similarity=0.205  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH---HHHHHHHHH
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH---AIQLIKRFL  115 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~---~~~~~~~~~  115 (243)
                      .+|+++|.+|+|||||+|+|+|... +.++..+..|......   .....+.++|++|..........   ....+..+.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY---IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE---EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc---cccccceEEEEEeeccccccccccchhhhHHhhhh
Confidence            3899999999999999999998753 3344444444333222   22345778999998655444322   111222222


Q ss_pred             -hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 -LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 -~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ....+++++++++.+. .++..+..+++.+...     ..|+++|+||+|+.
T Consensus       101 ~~~~~~~~vi~viD~~~-~~~~~~~~~~~~l~~~-----~~piivv~NK~D~~  147 (195)
T d1svia_         101 TTREELKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKI  147 (195)
T ss_dssp             HHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             ccccchhhhhhhhhccc-cccccccccccccccc-----cCcceechhhcccc
Confidence             2357899999976653 3677778888777653     26999999999985

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.4e-13  Score=105.37  Aligned_cols=126  Identities=14%  Similarity=0.193  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +|+++|.+|+|||||+|+|++......  .++.+........ ...+..+.+|||||...      .....+..+.  ..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~------~~~~~~~~~~--~~   71 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT--QTSITDSSAIYKVNNNRGNSLTLIDLPGHES------LRFQLLDRFK--SS   71 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB--CCCCSCEEEEEECSSTTCCEEEEEECCCCHH------HHHHHHHHHG--GG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--cCCeeEEEEEEEEeeeeeeeeeeeecccccc------ccchhhhhhh--hh
Confidence            699999999999999999998764322  2333332222222 23467899999999831      1111222222  47


Q ss_pred             CcEEEEEEeCCCcc-cChhHHHHH-HHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113          120 IDVLLYVDRLDVYR-VDNLDKQIT-RAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  178 (243)
Q Consensus       120 ~~~il~v~~~d~~~-~~~~~~~~l-~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~  178 (243)
                      ++++++|++..... .......++ ..+..........|+++|+||+|+.  +..+.++..
T Consensus        72 ~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~--~a~~~~~i~  130 (207)
T d2fh5b1          72 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA--MAKSAKLIQ  130 (207)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST--TCCCHHHHH
T ss_pred             ccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccC--CCCCHHHHH
Confidence            89999997764321 111222222 2333222222236899999999995  334444443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.47  E-value=3.3e-13  Score=103.26  Aligned_cols=115  Identities=14%  Similarity=0.180  Sum_probs=71.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCC------eeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP------RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI  111 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~------~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~  111 (243)
                      +.++|+++|.+|+|||||+|+|++.......+....+.      ..........+..+.++||||..       +..+.+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-------~~~~~~   76 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAV   76 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc-------ccccch
Confidence            57899999999999999999999865332222111111      11122334677889999999973       233333


Q ss_pred             HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...+  ..+|++++|++... .........+..+.. .    ..|+++|+||+|+.
T Consensus        77 ~~~l--~~~d~~ilv~d~~~-g~~~~~~~~~~~~~~-~----~~p~iiv~NKiD~~  124 (179)
T d1wb1a4          77 VSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDH-F----NIPIIVVITKSDNA  124 (179)
T ss_dssp             HHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHH-T----TCCBCEEEECTTSS
T ss_pred             hhhh--hhcccccccccccc-ccchhhhhhhhhhhh-c----CCcceecccccccc
Confidence            3333  47899999976653 234444444444333 2    26999999999985

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.46  E-value=1.3e-13  Score=109.67  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE------------------EEeeeCCeEEEEEeCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM------------------VSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~------------------~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      .|+++|.+++|||||+|+|++....... ....+.....                  ....+.+..+.++||||..+...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchhee-cCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            3999999999999999999976432211 1111111000                  11234566899999999865433


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      ....   .      ...+|++|+|+++.. .+.......+..+...     ..|+|+|+||+|+...+
T Consensus        86 ~~~~---~------~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          86 LRKR---G------GALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             SBCS---S------SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSTTC
T ss_pred             cchh---c------ccccceEEEEEeccc-CcccchhHHHHHhhcC-----CCeEEEEEECccCCCch
Confidence            2211   1      147899999977653 3666677777666653     36999999999986444

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.45  E-value=2.6e-13  Score=105.39  Aligned_cols=116  Identities=13%  Similarity=0.074  Sum_probs=74.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc------c---------cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKA------V---------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      ..++|+++|..++|||||+++|++...      .         ......+.|.........+.++.+.++||||..    
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~----   77 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----   77 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH----
Confidence            458999999999999999999985210      0         000111223333345556788999999999973    


Q ss_pred             CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                         ++.+.+.+.+  ..+|++|+|++... ...+..++.+..... ++.   +|+|+++||+|+.
T Consensus        78 ---~f~~~~~~~~--~~aD~allVVda~~-G~~~QT~~~~~~a~~-~~~---~~iIv~iNK~D~~  132 (196)
T d1d2ea3          78 ---DYVKNMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQ-IGV---EHVVVYVNKADAV  132 (196)
T ss_dssp             ---HHHHHHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CCEEEEEECGGGC
T ss_pred             ---HHHHHHHHHH--hhcCeEEEEEEcCC-CCchhHHHHHHHHHH-hcC---CcEEEEEeccccc
Confidence               2333333322  57899999977754 244444444444443 232   5899999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.45  E-value=3.9e-13  Score=100.06  Aligned_cols=114  Identities=12%  Similarity=0.077  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT  119 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~  119 (243)
                      +||+++|++|||||||+|++.+.+.....  +  +..............+.++|+||....   ...    ...+.  ..
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~d~~g~~~~---~~~----~~~~~--~~   67 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDKI---RPL----WRHYF--QN   67 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCC--C--CSSCCEEEEECSSCEEEEEECCCCGGG---HHH----HHHHT--TT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccc--c--ceeeEEEEEeeeeEEEEEecCCCcccc---hhh----hhhhh--cc
Confidence            58999999999999999999977642221  1  112223344567789999999998432   111    11222  58


Q ss_pred             CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +++++++++............+...+..... ....|+++|.||.|+.
T Consensus        68 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~  114 (160)
T d1r8sa_          68 TQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP  114 (160)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             ceeEEEEEEecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeeccccc
Confidence            8999999887543222222222222222211 2236899999999975

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.45  E-value=9e-13  Score=99.98  Aligned_cols=117  Identities=9%  Similarity=0.014  Sum_probs=73.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL  116 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~  116 (243)
                      ++.+||+++|.+|||||||+|+|.+...........    .........+..+.++|++|..........   .+     
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~-----   80 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNT---YY-----   80 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGGGHH---HH-----
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccc----eeEEEEeecceEEEEeccccccccccchhh---hh-----
Confidence            467999999999999999999999987644333222    223344567889999999998654433321   22     


Q ss_pred             cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                       ..++++++|++.+.....+............ ......|+++|+||+|+.
T Consensus        81 -~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~  129 (177)
T d1zj6a1          81 -TNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVK  129 (177)
T ss_dssp             -TTCCEEEEEEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTST
T ss_pred             -ccceeeeeecccccccchhhhhhhhhhhhhc-ccccceEEEEEEEccccc
Confidence             4789999997775433222222222222221 222347999999999985

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.3e-13  Score=101.55  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LN  117 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~~  117 (243)
                      -.|+++|.+|+|||||+|+|+|.+...++..+.++..............+.++|+||.....  ............  ..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhccccch
Confidence            35899999999999999999999877676666666666666666777888899999984221  111111111111  12


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ..+++++++.+..  ........+...+.+     ...|.++|+||+|..
T Consensus        84 ~~~~~~l~~~d~~--~~~~~~~~~~~~l~~-----~~~~~i~v~~k~d~~  126 (179)
T d1egaa1          84 GDVELVIFVVEGT--RWTPDDEMVLNKLRE-----GKAPVILAVNKVDNV  126 (179)
T ss_dssp             CCEEEEEEEEETT--CCCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred             hhcceeEEEEecC--ccchhHHHHHHHhhh-----ccCceeeeeeeeecc
Confidence            3566777775443  333333333323322     126899999999875

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.4e-11  Score=99.97  Aligned_cols=127  Identities=20%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-----------------------------------
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-----------------------------------   82 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-----------------------------------   82 (243)
                      .-.+|+|+|..++|||||+|+|+|.++.+++..+.+...+.....                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            345899999999999999999999986555544432211111000                                   


Q ss_pred             ---------------ee-CCeEEEEEeCCCCCCCCCCc------HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHH
Q 026113           83 ---------------SR-AGFTLNIVDTPGLIEGGYVN------YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQ  140 (243)
Q Consensus        83 ---------------~~-~~~~~~viDTPG~~~~~~~~------~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~  140 (243)
                                     .. .-..+.++||||+......+      ..+...+..|+. ...+++++|.+... ..+..+  
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~-~~~~~il~v~~a~~-~~~~~~--  180 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD--  180 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSS-CGGGCH--
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhc-Cccceeeeeccccc-chhhhH--
Confidence                           00 11248899999997543222      123334444553 23456666655543 233322  


Q ss_pred             HHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113          141 ITRAITDNFGEQIWKRALIVLTHAQLSLPD  170 (243)
Q Consensus       141 ~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~  170 (243)
                      .....+.. ... ..++++|+||+|..++.
T Consensus       181 ~~~~~~~~-~~~-~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         181 ALKIAKEV-DPQ-GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHHH-CTT-CSSEEEEEECGGGSCTT
T ss_pred             HHHHHHHh-CcC-CCceeeEEeccccccch
Confidence            22233332 221 26899999999987543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.33  E-value=9.6e-12  Score=102.84  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST   69 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~   69 (243)
                      ..+|+|+|..++|||||+|+|+|..+.+++.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~   54 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGS   54 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence            3589999999999999999999988644443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.31  E-value=1.1e-11  Score=97.92  Aligned_cols=137  Identities=20%  Similarity=0.176  Sum_probs=80.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc----------cc----------------------CCCCCCCeeEEEEeee
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT----------VS----------------------TFQSEGPRPVMVSRSR   84 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~----------~~----------------------~~~~~t~~~~~~~~~~   84 (243)
                      +..+||+++|..++|||||+++|+...-..          ..                      .....+..........
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            456999999999999999999997321000          00                      0001122222344556


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .++.+.++||||..+.   -.    .+.+.+  ..+|++++|+++.. .......+.+. +...+|-   +++|+++||+
T Consensus        87 ~~~~~~iiD~PGH~df---v~----~~~~g~--~~aD~ailVvda~~-G~~~Qt~e~~~-~~~~~gv---~~iiv~vNK~  152 (222)
T d1zunb3          87 AKRKFIIADTPGHEQY---TR----NMATGA--STCDLAIILVDARY-GVQTQTRRHSY-IASLLGI---KHIVVAINKM  152 (222)
T ss_dssp             SSEEEEEEECCCSGGG---HH----HHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHH-HHHHTTC---CEEEEEEECT
T ss_pred             cceEEEEEeccchhhh---hh----hhcccc--ccCceEEEEecccc-CcccchHHHHH-HHHHcCC---CEEEEEEEcc
Confidence            7889999999999532   22    222222  48999999977654 24444444333 3334442   5799999999


Q ss_pred             CCCCCCCCCHHHHHHhhhHHHHHHHcc
Q 026113          165 QLSLPDRLDYEVFCSKRSEALLKFVSP  191 (243)
Q Consensus       165 D~~~~~~~~~~~~~~~~~~~l~~~i~~  191 (243)
                      |+...+   -+.+ ....+.+..+++.
T Consensus       153 D~~~~~---~~~~-~~~~~~l~~~~~~  175 (222)
T d1zunb3         153 DLNGFD---ERVF-ESIKADYLKFAEG  175 (222)
T ss_dssp             TTTTSC---HHHH-HHHHHHHHHHHHT
T ss_pred             cccccc---ceeh-hhhHHHHhhhhHh
Confidence            986322   2222 2223455666654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.31  E-value=7.7e-12  Score=93.47  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=74.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +.+||+++|.+|||||||+|++++......    ..+...........+..+.++|++|..........         ..
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~   70 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC---------YY   70 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGG---------GC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce----ecccceeeeeeccCceEEEEeeccccccccccchh---------hh
Confidence            579999999999999999999998874321    12333444555677889999999998543222111         12


Q ss_pred             CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ...+++++++++..................... ....++++|+||.|+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iv~nk~Dl~  119 (169)
T d1upta_          71 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDME  119 (169)
T ss_dssp             TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             hhhhhhhhhhhhhhcchhhhccchhhhhhhhhc-cccceEEEEEeecccc
Confidence            477888888766432222222222222222222 2236899999999986

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.6e-11  Score=91.17  Aligned_cols=113  Identities=11%  Similarity=0.084  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI  120 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~  120 (243)
                      ||+++|++|||||||+|+|++.......    .|...........+....++||+|........+       .  ....+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~   68 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------D--YFPEV   68 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEECCTTCCEEEEECCCSGGGGGGGG-------G--GCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeee----ceeeEeEEEeccCCeeEEEEeeccchhhhhhHh-------h--hhhhe
Confidence            8999999999999999999988753322    233334455566778899999999853322211       1  12578


Q ss_pred             cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ++++++++............+....... ......|++++.||.|+.
T Consensus        69 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~  114 (166)
T d2qtvb1          69 NGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAP  114 (166)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSS
T ss_pred             eeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccc
Confidence            9999997775432222223333222222 223447899999999985

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=4.9e-11  Score=90.61  Aligned_cols=124  Identities=18%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HHH-
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIK-RFL-  115 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~-~~~-  115 (243)
                      ..++|+++|.+|+|||||+|+|++.+........+.+...........+......++++................ ... 
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLE   94 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhh
Confidence            579999999999999999999999875444443333433444444556666656666655443333322211111 111 


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      .......++.+..... ........++..+...     ..++++++||+|+.
T Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~v~~k~D~~  140 (188)
T d1puia_          95 KRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDS-----NIAVLVLLTKADKL  140 (188)
T ss_dssp             HCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             hhhheeEEEEeecccc-cchhHHHHHHHHhhhc-----cccccchhhhhhcc
Confidence            1233444444443332 2444455555555443     26899999999986

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=5e-11  Score=92.90  Aligned_cols=119  Identities=15%  Similarity=0.074  Sum_probs=67.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC--CC--eeEE--------------E------------EeeeC
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE--GP--RPVM--------------V------------SRSRA   85 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~--t~--~~~~--------------~------------~~~~~   85 (243)
                      .+++++|+++|..++|||||+|+|++............  +.  ....              .            .....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            34669999999999999999999997432111100000  00  0000              0            00112


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      .+.+.++||||..       .+...+...+  ..+|++|+|++.... +.+.+.+....+...+|.   +|+|+++||+|
T Consensus        85 ~r~~~iiD~PGH~-------df~~~~~~~~--~~ad~ailvVda~~g-i~~~~t~e~~~~~~~~~i---~~iIV~vNK~D  151 (205)
T d2qn6a3          85 LRRISFIDAPGHE-------VLMATMLSGA--ALMDGAILVVAANEP-FPQPQTREHFVALGIIGV---KNLIIVQNKVD  151 (205)
T ss_dssp             EEEEEEEECSCHH-------HHHHHHHHTS--SCCSEEEEEEETTSC-SSCHHHHHHHHHHHHTTC---CCEEEEEECGG
T ss_pred             eEEEEEeccchHH-------HHHhhhhcce--ecccccccccccccc-ccchhHHHHHHHHHHcCC---ceeeeccccCC
Confidence            3468999999983       2223333222  478999999776542 323332222233333443   58999999999


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      +.
T Consensus       152 l~  153 (205)
T d2qn6a3         152 VV  153 (205)
T ss_dssp             GS
T ss_pred             Cc
Confidence            86

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=2.5e-11  Score=98.54  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc-----ccc------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA-----VTV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~-----~~~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      +|+++|..|+|||||+.+|+-..-     ..+      .+      ....|.........|.+..+.++||||..|... 
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~-   86 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI-   86 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST-
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH-
Confidence            699999999999999999972210     001      11      112233344567789999999999999976643 


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHH
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS  179 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~  179 (243)
                        +....++      -+|..|+|++... -.. .....+....+..    ..|.++++||+|..   ..++.+.++
T Consensus        87 --e~~~~l~------~~D~avlVvda~~-Gv~-~~T~~~w~~a~~~----~lP~i~fINKmDr~---~ad~~~~l~  145 (276)
T d2bv3a2          87 --EVERSMR------VLDGAIVVFDSSQ-GVE-PQSETVWRQAEKY----KVPRIAFANKMDKT---GADLWLVIR  145 (276)
T ss_dssp             --THHHHHH------HCCEEEEEEETTT-SSC-HHHHHHHHHHHTT----TCCEEEEEECTTST---TCCHHHHHH
T ss_pred             --HHHHHHH------hhhheEEeccccC-Ccc-hhHHHHHHHHHHc----CCCEEEEEeccccc---ccccchhHH
Confidence              3333343      6799999966542 122 2332232332322    36999999999963   345555543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.24  E-value=2.8e-11  Score=93.58  Aligned_cols=117  Identities=14%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc--cCCCCCCCeeEEE-----------------------EeeeCCeEEEEE
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMV-----------------------SRSRAGFTLNIV   92 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~--~~~~~~t~~~~~~-----------------------~~~~~~~~~~vi   92 (243)
                      ..++|+++|..++|||||+|+|+|......  ....+.|......                       .....+..+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            568999999999999999999998532111  1111112111100                       011123458999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113           93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus        93 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      ||||..       .+...+.+.+  ..+|++++|++.......+...+.+..+.. .+.   .++++++||+|+.
T Consensus        84 DtPGh~-------~f~~~~~~~~--~~~d~~ilvvda~~g~~~~~t~e~~~~~~~-~~~---~~iiv~inK~D~~  145 (195)
T d1kk1a3          84 DAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELV  145 (195)
T ss_dssp             ECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGS
T ss_pred             ccchhh-------hhhHHhhccc--ccccccccccchhhhhhhhhhHHHHHHHHH-hcC---ccceeeeecccch
Confidence            999962       2333333322  478999999777643223333344433333 332   4689999999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.23  E-value=2.7e-11  Score=91.82  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL  115 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~  115 (243)
                      .+++.||+++|.+|||||||+|+|.+.......  +.  ...........+..+.++|++|..........   ..    
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----   78 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--PT--LHPTSEELTIAGMTFTTFDLGGHIQARRVWKN---YL----   78 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC--------CC--CCCSCEEEEETTEEEEEEEECC----CCGGGG---GG----
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee--cc--cccceeEEEecccccccccccchhhhhhHHhh---hh----
Confidence            357899999999999999999999988753322  21  12222344567788999999998765443321   11    


Q ss_pred             hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                        ..+++++++++.............+...... ......|++++.||.|+.
T Consensus        79 --~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~  127 (186)
T d1f6ba_          79 --PAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRP  127 (186)
T ss_dssp             --GGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTST
T ss_pred             --cccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcc
Confidence              4788999997765432222222222222211 122347999999999975

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1e-11  Score=99.18  Aligned_cols=138  Identities=13%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCC------------------cc---------cccCCCCCCCeeEEEEeeeCCe
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII---GEK------------------AV---------TVSTFQSEGPRPVMVSRSRAGF   87 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll---g~~------------------~~---------~~~~~~~~t~~~~~~~~~~~~~   87 (243)
                      ..++|+++|..++|||||+.+|+   |.-                  .+         ......+.|.........+.++
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            46899999999999999999986   210                  00         0001123344444556678899


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-----DNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~-----~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      ++.++||||..|.       ...+.+  ....+|+.|+|++...-.+     .+.+......+...+|-   +++|+++|
T Consensus        85 ~i~iiDtPGH~df-------~~~~~~--g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv---~~iiv~iN  152 (239)
T d1f60a3          85 QVTVIDAPGHRDF-------IKNMIT--GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV---RQLIVAVN  152 (239)
T ss_dssp             EEEEEECCCCTTH-------HHHHHH--SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             EEEEEECCCcHHH-------HHHHHH--HHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCC---CeEEEEEE
Confidence            9999999999542       222222  2257899999966643111     11122222233444442   57899999


Q ss_pred             CCCCCCCCCCCHHHHHHhhhHHHHHHHcc
Q 026113          163 HAQLSLPDRLDYEVFCSKRSEALLKFVSP  191 (243)
Q Consensus       163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~  191 (243)
                      |+|+...   +.+.|.. ..+.+.+++..
T Consensus       153 KmD~~~~---d~~~~~~-~~~el~~~l~~  177 (239)
T d1f60a3         153 KMDSVKW---DESRFQE-IVKETSNFIKK  177 (239)
T ss_dssp             CGGGGTT---CHHHHHH-HHHHHHHHHHH
T ss_pred             CCCCCCC---CHHHHHH-HHHHHHHHHHh
Confidence            9997533   2333322 23455555543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.22  E-value=8.8e-11  Score=94.94  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcc-----cccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKAV-----TVST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~~-----~~~~------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      +|+++|..++|||||+.+|+...-.     .+..            ....|.........|.+..+.++||||..|.   
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF---   80 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF---   80 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG---
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh---
Confidence            6999999999999999999632110     0111            1122334445677899999999999999643   


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113          104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+....++      -+|+.++|++... .........++...+.     ..|.++++||+|.
T Consensus        81 ~~e~~~al~------~~D~avlvvda~~-Gv~~~t~~~~~~~~~~-----~~p~~i~iNk~D~  131 (267)
T d2dy1a2          81 VGEIRGALE------AADAALVAVSAEA-GVQVGTERAWTVAERL-----GLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECGGG
T ss_pred             hhhhhhhhc------ccCceEEEeeccC-CccchhHHHHHhhhhc-----ccccccccccccc
Confidence            233333443      7899999966643 2334444444444432     2699999999995

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.2e-11  Score=95.39  Aligned_cols=114  Identities=13%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK  118 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~  118 (243)
                      -+||+++|.+|||||||++.+.    +.....|  |...........+..+.+|||+|+........       .  ...
T Consensus         2 ~iKivllG~~~vGKTsll~r~~----f~~~~~p--TiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~-------~--~~~   66 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR----IIHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWF-------E--CFD   66 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH----HHHSCCC--CSSEEEEEEEETTEEEEEEEECC-------CT-------T--SCT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh----cCCCCCC--eeeeEEEEEeeeeeeeeeecccceeeeccccc-------c--ccc
Confidence            4899999999999999999982    2233333  33344555677889999999999953322111       1  124


Q ss_pred             CCcEEEEEEeCCCcc-c------ChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYR-V------DNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~-~------~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                      .+++++++++..... +      .......+..+......  ....|+++|+||+|+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          67 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            788999997764321 1      01122334444443321  1236999999999974

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1e-11  Score=95.28  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +++||+++|..|+|||||++.+.....      +  |..............+.+|||+|.........       .+  .
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~------~--t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~-------~~--~   63 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE------A--GTGIVETHFTFKDLHFKMFDVGGQRSERKKWI-------HC--F   63 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS------C--CCSEEEEEEEETTEEEEEEEECCSGGGGGGGG-------GG--C
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC------C--CccEEEEEEEeeeeeeeeeccccccccccchh-------hc--c
Confidence            368999999999999999999875432      1  12233445667888999999999954322221       11  2


Q ss_pred             CCCcEEEEEEeCCCcc-cCh------hHHHHHHHHHHHhcc--cccccEEEEEeCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-VDN------LDKQITRAITDNFGE--QIWKRALIVLTHAQL  166 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~~~------~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~  166 (243)
                      .+++++++|++++... +..      ........+......  ....|+++|+||+|+
T Consensus        64 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~  121 (195)
T d1svsa1          64 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL  121 (195)
T ss_dssp             TTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred             cCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchh
Confidence            5899999998764322 211      112222223222211  123589999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=3.4e-11  Score=98.05  Aligned_cols=68  Identities=21%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA  107 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~  107 (243)
                      ..+++|+++|.+|+|||||+|+|.|.....+++.|+.|...+..   ..+.++.++||||+..+...+++.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i---~~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV---KVGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCE---EETTTEEEEECCCCCCSCCCCHHH
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEE---ECCCCeEEecCCCccccCCccHHH
Confidence            46799999999999999999999999988888888888754332   345679999999998777666543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=3.3e-11  Score=95.01  Aligned_cols=114  Identities=13%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      ...||+++|..|||||||++.+.....     .|  |..........++..+.+||++|+......-.       .+  .
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~-----~p--TiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~-------~~--~   68 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV-----VL--TSGIFETKFQVDKVNFHMFDVGGQRDERRKWI-------QC--F   68 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC-----CC--CCSCEEEEEEETTEEEEEEECCCSTTTTTGGG-------GG--C
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc-----CC--CCCeEEEEEEECcEEEEEEecCccceeccchh-------hh--c
Confidence            468999999999999999999863321     12  33334445667899999999999864432221       11  1


Q ss_pred             CCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhccc--ccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~  167 (243)
                      .+++++++|++.....       ......+.+..+...+...  ...|+++++||+|+.
T Consensus        69 ~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          69 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             TTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             ccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            5899999998764321       1122233444455544432  236899999999984

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=8.3e-11  Score=90.34  Aligned_cols=116  Identities=15%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN  117 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~  117 (243)
                      +++||+++|..|||||||++.+.....   ...|  |..............+.+|||+|+........       .+  .
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~---~~~p--TiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~~--~   66 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG---SGVP--TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWI-------HC--F   66 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS---SCCC--CCSCEEEEEECSSCEEEEEECCCSTTGGGGGG-------GG--C
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC---CCCc--eeeEEEEEEeccceeeeecccccccccccccc-------cc--c
Confidence            468999999999999999999975542   1223  33333344556778999999999964432221       11  1


Q ss_pred             CCCcEEEEEEeCCCcc-c------ChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113          118 KTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  167 (243)
Q Consensus       118 ~~~~~il~v~~~d~~~-~------~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~  167 (243)
                      .+++++++|++..... +      .......++.+......  ....|+++|+||.|+.
T Consensus        67 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          67 ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred             cccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence            5889999997764321 1      11122223333333221  1236899999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.10  E-value=1.3e-10  Score=95.62  Aligned_cols=86  Identities=20%  Similarity=0.250  Sum_probs=68.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-----------------CeEEEEEeCCCCCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-----------------GFTLNIVDTPGLIEG  100 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~viDTPG~~~~  100 (243)
                      ..++|.+||.++||||||+|++++..++.+..+|.+|.++........                 ..++.++|.||+..+
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            569999999999999999999998876677889999988766554433                 247899999998755


Q ss_pred             CCC----cHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113          101 GYV----NYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus       101 ~~~----~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      ...    ..+++..++      .+|++++|++.
T Consensus        89 A~~g~GLGn~fL~~ir------~~d~lihVV~~  115 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVR------AVDAIYQVVRA  115 (296)
T ss_dssp             CCSSSSSCHHHHHHHT------TCSEEEEEEEC
T ss_pred             cccccccHHHHHHHhh------ccceeEEEEec
Confidence            433    346777775      99999999875

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=4.5e-11  Score=99.28  Aligned_cols=86  Identities=22%  Similarity=0.228  Sum_probs=43.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee------------------------eCCeEEEEEeCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------------RAGFTLNIVDTP   95 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~viDTP   95 (243)
                      ++|.++|.+++|||||+|+|+|.+. .++.+|.+|.++......                        ....++.++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            4799999999999999999999875 788888888765432211                        122469999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHh-cCCCcEEEEEEeC
Q 026113           96 GLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRL  129 (243)
Q Consensus        96 G~~~~~~~~~~~~~~~~~~~~-~~~~~~il~v~~~  129 (243)
                      |+.........   .-.+++. ...+|++++|++.
T Consensus        80 Gli~ga~~g~~---~~~~~l~~i~~~d~ii~VVd~  111 (319)
T d1wxqa1          80 GLVPGAHEGRG---LGNKFLDDLRMASALIHVVDA  111 (319)
T ss_dssp             ------------------CCCSSTTCSEEEEEEET
T ss_pred             Ccccchhcccc---hHHHHHHhhccceEEEEEecc
Confidence            99754332221   1112222 2589999999875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.04  E-value=8.5e-10  Score=86.96  Aligned_cols=119  Identities=13%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc------------------------------cccCCCCCCCeeEEEEeeeCCe
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRAGF   87 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~   87 (243)
                      ..++|+++|..++|||||+.+|+...-.                              ......+.+........++.+.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            4689999999999999999988631100                              0001112222333344567888


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccCh---hHHHHHHH--HHHHhcccccccEEEEEe
Q 026113           88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN---LDKQITRA--ITDNFGEQIWKRALIVLT  162 (243)
Q Consensus        88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~---~~~~~l~~--l~~~~~~~~~~~~ivV~t  162 (243)
                      .+.++||||..+.       ...+.+.  ..-+|+.|+|+++..--...   ...++.+.  +...++.   .++|+++|
T Consensus        82 ~i~iiDtPGH~df-------~~~~~~g--~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~---~~iIv~iN  149 (224)
T d1jnya3          82 FFTIIDAPGHRDF-------VKNMITG--ASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGL---DQLIVAVN  149 (224)
T ss_dssp             EEEECCCSSSTTH-------HHHHHHT--SSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTC---TTCEEEEE
T ss_pred             eeEEeeCCCcHHH-------HHHHHHH--HHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCC---CceEEEEE
Confidence            9999999999532       2223222  24789999997775321000   01112222  2233332   57999999


Q ss_pred             CCCCCC
Q 026113          163 HAQLSL  168 (243)
Q Consensus       163 k~D~~~  168 (243)
                      |+|+..
T Consensus       150 K~D~~~  155 (224)
T d1jnya3         150 KMDLTE  155 (224)
T ss_dssp             CGGGSS
T ss_pred             cccCCC
Confidence            999863

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.98  E-value=2.7e-10  Score=92.83  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGG  101 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~  101 (243)
                      .++|.+||.++||||||+|++++..+ ....+|.+|..+......+.+                 -.+.++|.||+..+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            47999999999999999999998875 677888888776654443322                 248899999997543


Q ss_pred             C----CcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113          102 Y----VNYHAIQLIKRFLLNKTIDVLLYVDRL  129 (243)
Q Consensus       102 ~----~~~~~~~~~~~~~~~~~~~~il~v~~~  129 (243)
                      .    ...++++.++      .+|++++|++.
T Consensus        81 ~~g~Glg~~FL~~ir------~~d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIR------ETDAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHH------TCSEEEEEEEC
T ss_pred             ccCCCccHHHHHHHH------hccceEEEeec
Confidence            2    2235666776      89999999864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.98  E-value=9.6e-10  Score=87.82  Aligned_cols=118  Identities=12%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh---CCCccc---------------------------ccCCCCCCCeeEEEEeeeCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSII---GEKAVT---------------------------VSTFQSEGPRPVMVSRSRAG   86 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~ll---g~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~   86 (243)
                      +..++|+++|..++|||||+.+|+   |.-...                           .....+.+.........+.+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            357899999999999999999995   221000                           00000111111122345677


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc------ChhHHHHHHHHHHHhcccccccEEEE
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV  160 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivV  160 (243)
                      ..+.++||||..+...   +    +.+.  ...+|++++|++.+.--+      ...-+..+ .+...++.   ++++++
T Consensus       102 ~~i~~iDtPGH~df~~---~----~~~g--~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~~~i---~~iiv~  168 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVT---N----MING--ASQADIGVLVISARRGEFEAGFERGGQTREHA-VLARTQGI---NHLVVV  168 (245)
T ss_dssp             EEEEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHHTTC---SSEEEE
T ss_pred             ceeeeecccccccchh---h----hhhh--hhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHHcCC---CeEEEE
Confidence            8999999999964321   1    1111  147899999977753211      11112222 22333332   578999


Q ss_pred             EeCCCCC
Q 026113          161 LTHAQLS  167 (243)
Q Consensus       161 ~tk~D~~  167 (243)
                      +||+|+.
T Consensus       169 iNKmD~~  175 (245)
T d1r5ba3         169 INKMDEP  175 (245)
T ss_dssp             EECTTST
T ss_pred             EEcCCCC
Confidence            9999985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=8.3e-09  Score=85.88  Aligned_cols=115  Identities=15%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             Cce-EEEEEcCCCCcHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEee----------------eC
Q 026113           38 NTL-TILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRS----------------RA   85 (243)
Q Consensus        38 ~~~-~IllvG~~g~GKSSlin~llg~~~~~~---------------~~~~~~t~~~~~~~~~----------------~~   85 (243)
                      +.+ +|+++|..++|||||+.+|+...-...               ....+.|.........                +.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            346 599999999999999999972110000               0001112111111111                12


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  165 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D  165 (243)
                      +..+.++||||..+.   ..++...++      -+|++++|+++.. .........++...+.     ..|+++++||+|
T Consensus        95 ~~~inliDtPGh~dF---~~ev~~al~------~~D~allVVda~e-Gv~~qT~~~~~~a~~~-----~~p~i~viNKiD  159 (341)
T d1n0ua2          95 SFLINLIDSPGHVDF---SSEVTAALR------VTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVD  159 (341)
T ss_dssp             EEEEEEECCCCCCSS---CHHHHHHHH------TCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHH
T ss_pred             ceEEEEEcCCCcHHH---HHHHHHHHh------hcCceEEEEeccc-CcchhHHHHHHHHHHc-----CCCeEEEEECcc
Confidence            346999999999654   334444554      7899999977654 2333334444333322     269999999998


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       160 r~  161 (341)
T d1n0ua2         160 RA  161 (341)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.75  E-value=4.3e-09  Score=82.34  Aligned_cols=60  Identities=27%  Similarity=0.238  Sum_probs=38.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccC-------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      -..+++|.+|+|||||+|+|++.....++.       ..++|.....+....   .-.++||||+-+...
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~---gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF---GGYVVDTPGFANLEI  162 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT---SCEEESSCSSTTCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC---CcEEEeCCccccccc
Confidence            467999999999999999999875433322       223344333333322   246999999976554

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=5.8e-08  Score=80.34  Aligned_cols=35  Identities=31%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+++.++.+...+.++|.++|.+|+|||||+++|.
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHH
Confidence            45566666666679999999999999999999997

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.62  E-value=3e-08  Score=77.99  Aligned_cols=20  Identities=20%  Similarity=0.458  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -|+++|..|||||||+++|+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47899999999999999997

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=4.3e-09  Score=82.64  Aligned_cols=60  Identities=27%  Similarity=0.401  Sum_probs=34.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~  102 (243)
                      .-..+++|.+|+|||||+|+|++.....++..       .++|.....+.  .+|  -.|+||||+-+...
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~~g--g~iiDTPG~r~~~l  163 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSG--GLVADTPGFSSLEF  163 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETT--EEEESSCSCSSCCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--cCC--CEEEECCccccccc
Confidence            34668999999999999999998753333221       12333333332  344  35899999976553

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.47  E-value=1.7e-07  Score=72.48  Aligned_cols=72  Identities=21%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .+..+.+|||||..   ..+....+++.++....+++-+++|.+..   .........+.+.+.++     .-=+++||.
T Consensus        91 ~~~d~vlIDTaGr~---~~d~~~~~el~~~~~~~~~~~~llv~~a~---~~~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          91 EARDLILVDTAGRL---QIDEPLMGELARLKEVLGPDEVLLVLDAM---TGQEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             HTCCEEEEECCCCS---SCCHHHHHHHHHHHHHHCCSEEEEEEEGG---GTHHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             ccCcceeecccccc---hhhhhhHHHHHHHHhhcCCceEEEEeccc---cchhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            35579999999984   34555556666655445788888885543   23445555555555443     456899999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |..
T Consensus       160 De~  162 (207)
T d1ls1a2         160 DGD  162 (207)
T ss_dssp             GGC
T ss_pred             Ccc
Confidence            964

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.46  E-value=2.4e-07  Score=71.70  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=41.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113           85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  164 (243)
Q Consensus        85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~  164 (243)
                      .+..+.+|||||..... ......+++.+....-.++-+++|++...   ...+........+.+     ..--+++||.
T Consensus        93 ~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~lI~TKl  163 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQAS-----KIGTIIITKM  163 (211)
T ss_dssp             TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHHC-----TTEEEEEECT
T ss_pred             cCCceEEEecCCcCccc-hhhHHHHHHHHHHhhcCCceEEEEEeccc---CcchHHHHhhhhccc-----CcceEEEecc
Confidence            45579999999984222 11223344554443346788888855542   122333333333332     2445789999


Q ss_pred             CCC
Q 026113          165 QLS  167 (243)
Q Consensus       165 D~~  167 (243)
                      |..
T Consensus       164 Det  166 (211)
T d1j8yf2         164 DGT  166 (211)
T ss_dssp             TSC
T ss_pred             cCC
Confidence            964

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.44  E-value=1.5e-06  Score=66.83  Aligned_cols=71  Identities=13%  Similarity=0.129  Sum_probs=41.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEE
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI  159 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  159 (243)
                      +..+.+|||||..   ..+.+..++++++.      ....++-+++|++...   ...+........+.+     .+--+
T Consensus        88 ~~d~ilIDTaGr~---~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~l  156 (207)
T d1okkd2          88 GYDLLFVDTAGRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGV  156 (207)
T ss_dssp             TCSEEEECCCCCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEE
T ss_pred             CCCEEEcCccccc---hhhHHHHHHHHHHHHHhhhcccCCCceEEEEeeccc---CchHHHHHHHhhhcc-----CCceE
Confidence            5579999999984   33334444444332      1236788888855542   233433333333333     35578


Q ss_pred             EEeCCCCC
Q 026113          160 VLTHAQLS  167 (243)
Q Consensus       160 V~tk~D~~  167 (243)
                      ++||.|..
T Consensus       157 I~TKlDet  164 (207)
T d1okkd2         157 IVTKLDGT  164 (207)
T ss_dssp             EEECTTSS
T ss_pred             EEeccCCC
Confidence            99999975

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=2.1e-07  Score=72.07  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC------CCccccc-C-CCCCCC----------eeEEEEe----------------
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG------EKAVTVS-T-FQSEGP----------RPVMVSR----------------   82 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg------~~~~~~~-~-~~~~t~----------~~~~~~~----------------   82 (243)
                      .+|.-|+++|.+|+||||++-.|..      .++.... + +.....          ....+..                
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   88 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH   88 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHH
Confidence            4678999999999999998766652      2211110 0 000000          0000000                


Q ss_pred             -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc------CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccc
Q 026113           83 -SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK  155 (243)
Q Consensus        83 -~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~------~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~  155 (243)
                       ...+..+.+|||||..   ..+.+..++++.+...      ..++-+++|++...   ...+........+.+     .
T Consensus        89 ~~~~~~d~ilIDTaGr~---~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~  157 (213)
T d1vmaa2          89 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----N  157 (213)
T ss_dssp             HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----C
T ss_pred             HHHcCCCEEEEeccccc---cchHHHHHHHHHHHhhhhhccccccceeEEeecccc---Ccchhhhhhhhcccc-----C
Confidence             0235679999999983   3445555555554321      23678888855532   122222222222222     3


Q ss_pred             cEEEEEeCCCCC
Q 026113          156 RALIVLTHAQLS  167 (243)
Q Consensus       156 ~~ivV~tk~D~~  167 (243)
                      ..-+++||.|..
T Consensus       158 ~~~lI~TKlDe~  169 (213)
T d1vmaa2         158 VTGIILTKLDGT  169 (213)
T ss_dssp             CCEEEEECGGGC
T ss_pred             CceEEEecccCC
Confidence            677999999964

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.41  E-value=8.6e-07  Score=73.00  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             cccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           14 IQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +++-.........+++..+.+...+.++|.+.|.+|+|||||++.+.
T Consensus        26 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          26 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             HhCCCchhHHHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHH
Confidence            33444444455566777777666788999999999999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1.4e-07  Score=72.96  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEE
Q 026113           86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI  159 (243)
Q Consensus        86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  159 (243)
                      +..+.+|||||..   ..+.+..+++++...      ...++-+++|.+..   ....+........+..     ..--+
T Consensus        91 ~~d~ilIDTaGr~---~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~---~~~~~~~~~~~~~~~~-----~~~~l  159 (211)
T d2qy9a2          91 NIDVLIADTAGRL---QNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS---TGQNAVSQAKLFHEAV-----GLTGI  159 (211)
T ss_dssp             TCSEEEECCCCCG---GGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGG---GTHHHHHHHHHHHHHS-----CCCEE
T ss_pred             CCCEEEeccCCCc---cccHHHHHHHHHHHHHHhhhcccCcceeeeehhcc---cCcchHHHHhhhhhcc-----CCceE
Confidence            4578999999983   334455555554431      12367888885543   2233333333333332     36678


Q ss_pred             EEeCCCCC
Q 026113          160 VLTHAQLS  167 (243)
Q Consensus       160 V~tk~D~~  167 (243)
                      ++||.|..
T Consensus       160 IlTKlDe~  167 (211)
T d2qy9a2         160 TLTKLDGT  167 (211)
T ss_dssp             EEECCTTC
T ss_pred             EEeecCCC
Confidence            99999964

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.2e-05  Score=61.25  Aligned_cols=64  Identities=25%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc-ccC-CCCCCCeeEEEEee---eCCeEEEEEeCCCCCCCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEKAVT-VST-FQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGY  102 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~~~~-~~~-~~~~t~~~~~~~~~---~~~~~~~viDTPG~~~~~~  102 (243)
                      -.-|.++|..++|||+|+|.|+|..... ++. ..++|.........   ..+..+.++||.|+.+...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~  100 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK  100 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccccc
Confidence            3477899999999999999999876322 222 22344443332222   2355799999999987543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.44  E-value=2.9e-05  Score=57.35  Aligned_cols=23  Identities=35%  Similarity=0.738  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999975

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.14  E-value=0.00014  Score=53.16  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +++.+|+++|.+||||||+++.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.08  E-value=0.00013  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .-+|+++|.+|+|||||++.|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.01  E-value=0.0017  Score=50.57  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+..|++.|++|+|||++++++.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            4467999999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.99  E-value=0.00046  Score=51.15  Aligned_cols=40  Identities=15%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhhhc-CCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           22 QTKLLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        22 ~~~l~~~~~~~~~~-~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ...+..+++.+... ...++-|.+.|.+|||||||++.|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34455555555432 34678899999999999999999863

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00068  Score=50.95  Aligned_cols=93  Identities=18%  Similarity=0.292  Sum_probs=53.9

Q ss_pred             HHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      ++.+++.-+...  ..-+++++|++|+|||+++..+...-..  ...|.          ...+..+.-+|+..+......
T Consensus        30 Ei~~l~~iL~r~--~k~n~lLvG~pGVGKTalv~~LA~ri~~--~~vp~----------~L~~~~i~~ld~~~LiAg~~~   95 (195)
T d1jbka_          30 EIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN--GEVPE----------GLKGRRVLALDMGALVAGAKY   95 (195)
T ss_dssp             HHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH--TCSCG----------GGTTCEEEEECHHHHHTTTCS
T ss_pred             HHHHHHHHHhcc--CCCCeEEEecCCcccHHHHHHHHHHHHh--CCCCH----------HHcCceEEEeeHHHHhccCCc
Confidence            345555555543  3458999999999999999887643211  11111          133456777887776544433


Q ss_pred             cHHHHHHHHHHH---hcCCCcEEEEEEeCC
Q 026113          104 NYHAIQLIKRFL---LNKTIDVLLYVDRLD  130 (243)
Q Consensus       104 ~~~~~~~~~~~~---~~~~~~~il~v~~~d  130 (243)
                      ..++.+.+...+   .....++||++..+.
T Consensus        96 rG~~E~rl~~il~e~~~~~~~iILfIDeih  125 (195)
T d1jbka_          96 RGEFEERLKGVLNDLAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTTEEEEEETGG
T ss_pred             cHHHHHHHHHHHHHHhcCCCcEEEEcchHH
Confidence            334433343333   224568899986553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0021  Score=50.74  Aligned_cols=114  Identities=16%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             HHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      ++..++.-+...  ..-++++||++|+|||+++..+...-.  ....|.          ...+..+.-+|+..+......
T Consensus        26 Ei~~l~~iL~r~--~k~n~lLVG~~GvGKTalv~~la~ri~--~~~vp~----------~l~~~~i~~l~~~~liag~~~   91 (268)
T d1r6bx2          26 ELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV--QGDVPE----------VMADCTIYSLDIGSLLAGTKY   91 (268)
T ss_dssp             HHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH--HTCSCG----------GGTTCEEEECCCC---CCCCC
T ss_pred             HHHHHHHHHhcC--ccCCcEEECCCCCcHHHHHHHHHHHHH--hCCccc----------ccccceeEEeeechHhccCcc
Confidence            344455555433  346899999999999999988774421  111111          123445666777666654332


Q ss_pred             cHHHHHHHHHHHh--cCCCcEEEEEEeCCCc----ccChhHHHHHHHHHHHhcc
Q 026113          104 NYHAIQLIKRFLL--NKTIDVLLYVDRLDVY----RVDNLDKQITRAITDNFGE  151 (243)
Q Consensus       104 ~~~~~~~~~~~~~--~~~~~~il~v~~~d~~----~~~~~~~~~l~~l~~~~~~  151 (243)
                      ..++.+.+...+.  ....++|||+..+...    ............++..+..
T Consensus        92 ~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r  145 (268)
T d1r6bx2          92 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS  145 (268)
T ss_dssp             SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS
T ss_pred             chhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC
Confidence            2223223332221  1345677777443221    1122244555555555543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00023  Score=55.57  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=+++++|++|+|||||++.|+|--
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4589999999999999999999975

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00028  Score=51.13  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      -|.++|.+|||||||++.|+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.82  E-value=0.00027  Score=51.33  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|+++|.+||||||+++.|.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999985

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.82  E-value=0.00026  Score=52.77  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +|++|+++|.+||||||++..|.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998876

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.00058  Score=52.72  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           22 QTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        22 ~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...|+..+..........-.+++.|++|+||||+++.+.+.
T Consensus        18 ~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          18 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             HHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            44455555544443445678999999999999999998754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.81  E-value=0.00033  Score=54.75  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.=.++++|++|+|||||++.|+|--
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34588999999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.80  E-value=0.00031  Score=55.24  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|+|-.
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3479999999999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00019  Score=53.42  Aligned_cols=21  Identities=29%  Similarity=0.680  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |+++|++|+||+||++.|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999854

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00036  Score=54.78  Aligned_cols=25  Identities=20%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=.++++|++|+|||||++.|+|--
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhccc
Confidence            4588999999999999999999875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.75  E-value=0.00046  Score=50.20  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+.+.|.++|.+||||||++..|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            467889999999999999998876

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.71  E-value=0.0004  Score=52.60  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            367899999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.00091  Score=51.45  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           22 QTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        22 ~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ...|+.+++.....+.....+++.|++|+||||+++.+...
T Consensus        18 ~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          18 KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence            33455555544444444567999999999999999988743

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.69  E-value=0.00052  Score=51.19  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+|..|+++|.+||||||++..|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3678899999999999999988764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.69  E-value=0.00043  Score=49.27  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 026113           42 ILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg   61 (243)
                      |++.|.+||||||+++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.00049  Score=51.70  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      |+-|+++|.+|+||||+++.|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67799999999999999999884

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00044  Score=55.23  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.++++|++|+|||||++.|+|.-
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            378999999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.64  E-value=0.0008  Score=52.53  Aligned_cols=44  Identities=27%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             hhhHHHHHHHHHhhhh---cCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           19 PATQTKLLELLGKLKQ---ENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        19 ~~~~~~l~~~~~~~~~---~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+.+..+.+.++.+..   ....|.-|+|.|++|+||||++.+|.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_           9 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3344444444444432   2235566999999999999999998754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.63  E-value=0.00061  Score=50.68  Aligned_cols=23  Identities=17%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +.+||+++|.+||||||+...|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999998877

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00052  Score=53.11  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|||||||++.|.|-.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            367899999999999999999875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.59  E-value=0.00053  Score=53.05  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCcchhhHhccCCC
Confidence            367899999999999999999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0011  Score=51.40  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =-+.++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            367899999999999999999975

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.54  E-value=0.0004  Score=54.60  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .=+++++|++|+|||||++.|+|-.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3589999999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.53  E-value=0.00061  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      -|++.|.+||||||+++.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999998743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.52  E-value=0.00065  Score=52.79  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|||||||++.|.|-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            367999999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.0059  Score=50.65  Aligned_cols=124  Identities=13%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             HHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113           24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV  103 (243)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~  103 (243)
                      ++..++.-+...  ..-++++||++|+|||+++..+...-.  .+..|..          ..+..+.-+|...+..+...
T Consensus        30 ei~~~~~~L~r~--~k~n~llvG~~GvGKtaiv~~la~~i~--~~~vp~~----------l~~~~i~~ld~~~l~ag~~~   95 (387)
T d1qvra2          30 EIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV--KGDVPEG----------LKGKRIVSLQMGSLLAGAKY   95 (387)
T ss_dssp             HHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH--HTCSCTT----------STTCEEEEECC---------
T ss_pred             HHHHHHHHHhcC--CCCCCeEECCCCCCHHHHHHHHHHHHH--hCCCCHH----------HcCceEEEeeHhhhhcccCc
Confidence            345555555543  345679999999999999987663321  1111211          23455667777666543322


Q ss_pred             c---HHHHHHHHHHHhcCCCcEEEEEEeCCCcc---cChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113          104 N---YHAIQLIKRFLLNKTIDVLLYVDRLDVYR---VDNLDKQITRAITDNFGEQIWKRALIVLT  162 (243)
Q Consensus       104 ~---~~~~~~~~~~~~~~~~~~il~v~~~d~~~---~~~~~~~~l~~l~~~~~~~~~~~~ivV~t  162 (243)
                      .   ++.+..+...+.....++|||+..+...-   -..........|+..+..+- ..+|...|
T Consensus        96 ~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~-~~~I~~tT  159 (387)
T d1qvra2          96 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE-LRLIGATT  159 (387)
T ss_dssp             --CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTC-CCEEEEEC
T ss_pred             chhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCC-cceeeecC
Confidence            2   22222222223334557888885543210   01122344455555554332 34555544

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.51  E-value=0.00071  Score=49.68  Aligned_cols=21  Identities=29%  Similarity=0.691  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .||+++|.+||||||++..|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.0005  Score=50.89  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      -|+++|++||||||+++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.49  E-value=0.00066  Score=52.87  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =-+.++|++|||||||++.|+|-..
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3678999999999999999999853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00065  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|+++|.+|+||||+...|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.48  E-value=0.00071  Score=52.57  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .++++|++|||||||++.|.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45789999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.42  E-value=0.00058  Score=52.74  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =-+.++|++|||||||++.|.|-.
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            367899999999999999999975

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.40  E-value=0.00083  Score=52.21  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =.+.++|++|||||||++.|.|-..
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            4678999999999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.01  Score=46.24  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +-.+++.|++|+|||++++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            456999999999999999998743

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.001  Score=49.50  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      |+.|+++|.+||||||.+..|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999887763

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.37  E-value=0.00075  Score=49.07  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|+++|.+||||||+...+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468999999999999988875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0006  Score=52.79  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =-+.++|++|||||||++.|.|-.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            367899999999999999999964

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.0011  Score=48.75  Aligned_cols=21  Identities=24%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|+++|.+||||||+...|.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.00099  Score=51.77  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =-+.++|++|+|||||++.|.|...
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678999999999999999999863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0012  Score=48.64  Aligned_cols=23  Identities=17%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .++|+++|.+||||||++..|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999988863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.29  E-value=0.0015  Score=50.74  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      =.+.++|++|||||||++.|.|-..
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcC
Confidence            4789999999999999999999753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.28  E-value=0.0012  Score=48.75  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+|+++|.+||||||++..|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988774

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00075  Score=49.93  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+...|+++|.+||||||+++.|.
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            356889999999999999999885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.26  E-value=0.001  Score=52.13  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113           41 TILVMGKGGVGKSSTVNSIIGEKA   64 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~~~   64 (243)
                      -+.++|++|||||||++.|+|...
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            568999999999999999999853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.26  E-value=0.0011  Score=48.15  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      +|+++|.+||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988875

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.25  E-value=0.0012  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      --|++.|.+||||||+.+.|...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=48.11  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|+++|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998874

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.24  E-value=0.0014  Score=48.95  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +-++|+++|.+||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999988743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0014  Score=49.62  Aligned_cols=23  Identities=35%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +|+-|.+.|.+||||||+.+.|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0012  Score=49.01  Aligned_cols=21  Identities=33%  Similarity=0.688  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |+|+|++||||+||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.0013  Score=47.76  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 026113           42 ILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg   61 (243)
                      |.++|.+|||||||++.|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999998873

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.20  E-value=0.0012  Score=51.87  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      =.+.++|++|||||||++.|.|-.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            467999999999999999999875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.19  E-value=0.0013  Score=48.94  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++.+|+-|++-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999998743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.17  E-value=0.0018  Score=52.56  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ..+|++.|.+|+||||++|+|++.-
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhc
Confidence            4679999999999999999999653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0013  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+|+++|.+||||||.+..|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999988875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0018  Score=47.48  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..|.=|+++|.+||||||++..++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999999998864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.04  E-value=0.0017  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      =|++.|.+||||||+++.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4667799999999999998743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.03  E-value=0.0017  Score=47.30  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -|++.|.+||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47889999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0019  Score=48.87  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .=|+++|++|+|||||++.|+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            34789999999999999999854

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.88  E-value=0.0022  Score=46.65  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      .|+++|.+||||||+.+.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47889999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0022  Score=47.75  Aligned_cols=21  Identities=29%  Similarity=0.631  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      |+|+|++|+||+|+++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0031  Score=45.39  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+--++++|.+||||||++..|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345577899999999999998764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.81  E-value=0.0037  Score=47.31  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .++++.-|.+.|.+||||||+.+.|..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999999863

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.57  E-value=0.003  Score=46.12  Aligned_cols=19  Identities=37%  Similarity=0.529  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026113           42 ILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        42 IllvG~~g~GKSSlin~ll   60 (243)
                      |++.|.+||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4567999999999999885

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.49  E-value=0.0041  Score=46.16  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++.-|+++|++||||||++..|...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.0045  Score=45.70  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .|+-|.+.|.+||||||+++.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999998775

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.0098  Score=46.10  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +--|++.|++|+|||++++++.+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            456999999999999999999853

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0042  Score=46.05  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .-.|+++|++||||||++..|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999988874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.018  Score=43.24  Aligned_cols=23  Identities=13%  Similarity=0.328  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +--+++.|++|+|||+++..+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            44599999999999999886553

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.29  E-value=0.013  Score=45.01  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ..+-.+++.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0078  Score=46.15  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=25.1

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ...+..........-.+++.|++|+||||++.+++.
T Consensus        20 ~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          20 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             HHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             HHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            334444443333445799999999999999988764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.98  E-value=0.015  Score=44.06  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.+++.|++|+|||+++..+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999988753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.01  Score=46.27  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+--|++.|++|+|||++++++.+.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3456999999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.80  E-value=0.0077  Score=48.28  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+-.++++|+||+|||.|++++...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4567999999999999999998753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.019  Score=43.90  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .-.+++.|++|+||||++.++...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.64  E-value=0.011  Score=44.43  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +++.|.+-|++||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999888774

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.012  Score=47.15  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+.|+-|.+.|.+||||||+.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3578999999999999999987764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.47  E-value=0.017  Score=44.31  Aligned_cols=22  Identities=36%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      -.+++.|++|+|||||+..++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            4678999999999999998763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.0023  Score=47.06  Aligned_cols=18  Identities=33%  Similarity=0.634  Sum_probs=16.0

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 026113           43 LVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        43 llvG~~g~GKSSlin~ll   60 (243)
                      +++|++|+||||++.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.02  Score=43.12  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      -.+++.|++|+||||++..+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4589999999999999887763

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.24  E-value=0.011  Score=49.15  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..-=|++.|+||+||||++.+++..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhh
Confidence            4577899999999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.07  E-value=0.019  Score=47.03  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           36 NVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        36 ~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ...+-+|+++|+||+|||-++.+|.
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHH
Confidence            3467789999999999999998875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.06  E-value=0.012  Score=49.61  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .+-+|+++|+||+|||-|+++|.+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999998875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.05  E-value=0.022  Score=44.40  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             hhcccccCChhhHHHHHHHHH---hhhhcCC-CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           10 EWMGIQQFPPATQTKLLELLG---KLKQENV-NTLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~-~~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      +..|+.....+..+.+...+.   .....+. .+.-|++.|++|+|||++++++.+.-
T Consensus         8 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3           8 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             SCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            345556665555554432221   1222232 34579999999999999999987653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.033  Score=41.82  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999888743

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.97  E-value=0.32  Score=34.51  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT   94 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDT   94 (243)
                      +..-|++-|.-||||||++..++..- ......++.|..- .......+..+.=+|.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l-g~~~~V~SPTF~l-~~~Y~~~~~~i~H~Dl   86 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL-VEEYNIAGKMIYHFDL   86 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC-EEEEEETTEEEEEEEC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc-ccccccCCCceEE-EEeeccCCceEEEEEE
Confidence            45678999999999999998887332 1112233333322 2223345667777883

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.036  Score=43.76  Aligned_cols=26  Identities=38%  Similarity=0.362  Sum_probs=21.9

Q ss_pred             cCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113           35 ENVNTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        35 ~~~~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ..+.|+-|.+-|.+|+|||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34578999999999999999887664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.017  Score=43.71  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      -.+++.|++|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34899999999999999888753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.57  E-value=0.021  Score=41.79  Aligned_cols=24  Identities=38%  Similarity=0.642  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..=|++.|++|+||||+.-.+...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            346899999999999999887744

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.55  E-value=0.046  Score=44.65  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ++--+++.|++|+|||++++++.+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999988743

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.46  E-value=0.022  Score=41.70  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      ..=+++.|++|+|||++...+...-
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3458999999999999998887543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.33  E-value=0.024  Score=41.95  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      -|++-|..||||||++..|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.27  E-value=0.056  Score=42.24  Aligned_cols=38  Identities=18%  Similarity=0.461  Sum_probs=25.6

Q ss_pred             HHHHHHhhhhc-CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           25 LLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        25 l~~~~~~~~~~-~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      +..+++.+... .....-|++.|..|.|||||+..++..
T Consensus        29 ~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          29 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            33444444332 223456789999999999999988754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.26  E-value=0.014  Score=46.14  Aligned_cols=20  Identities=35%  Similarity=0.705  Sum_probs=16.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~l   59 (243)
                      .++ +++|+.|+||||++.+|
T Consensus        25 ~ln-vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVT-AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEE-EEECCTTTCSTHHHHHH
T ss_pred             CeE-EEECCCCCcHHHHHHHH
Confidence            355 67799999999999887

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.19  E-value=0.028  Score=41.91  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      +-|.++|..||||||+.+.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568899999999999998775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.14  E-value=0.026  Score=38.48  Aligned_cols=25  Identities=8%  Similarity=0.127  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      ++.+.|++.|.+|+|||++.++|.-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4679999999999999999999863

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.029  Score=41.94  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      +-|.++|..||||||+.+.|-
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            468899999999999998775

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.026  Score=42.02  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026113           41 TILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg~   62 (243)
                      -|++.|++||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5777799999999998887743

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.07  E-value=0.022  Score=46.82  Aligned_cols=20  Identities=35%  Similarity=0.695  Sum_probs=17.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~l   59 (243)
                      .++ +++|++|+|||+++.+|
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHH
Confidence            465 57799999999999997

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.02  E-value=0.064  Score=41.09  Aligned_cols=20  Identities=20%  Similarity=0.405  Sum_probs=16.8

Q ss_pred             EEEcCCCCcHHHHHHHHhCC
Q 026113           43 LVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        43 llvG~~g~GKSSlin~llg~   62 (243)
                      ++.|++|+|||++++.++..
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            44599999999999998754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.97  E-value=0.037  Score=43.23  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113          108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  168 (243)
Q Consensus       108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~  168 (243)
                      .+.+.+.+  ..+|+||+|.++-.. ++..+..+.    +.+.   .+|.++|+||+|+.+
T Consensus         6 ~r~i~~~i--~~~DvIl~V~DaR~P-~ss~~~~l~----~~~~---~Kp~IlVlNK~DLv~   56 (273)
T d1puja_           6 RREVTEKL--KLIDIVYELVDARIP-MSSRNPMIE----DILK---NKPRIMLLNKADKAD   56 (273)
T ss_dssp             HHHHHHHG--GGCSEEEEEEETTST-TTTSCHHHH----HHCS---SSCEEEEEECGGGSC
T ss_pred             HHHHHHHH--HhCCEEEEEEECCCC-CCCCCHHHH----HHHc---CCCeEEEEECccCCc
Confidence            34455444  489999999665221 222222222    2222   279999999999974

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.033  Score=44.55  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      -.++++|++|+|||.|+.+|.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHH
Confidence            379999999999999988866

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.02  Score=43.34  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      -.|++-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.033  Score=40.80  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg~   62 (243)
                      --+++.|++|+|||+|...++..
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            46688899999999999887744

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.61  E-value=0.062  Score=41.30  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=26.4

Q ss_pred             HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +..++++.........|++.|++|+||+.++..|..
T Consensus        10 ~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          10 KEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             HHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            334444554444567789999999999999998863

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.58  E-value=0.37  Score=35.62  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=36.1

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccE-EEEEeCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLTHAQ  165 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~tk~D  165 (243)
                      ..+.++|||+..     .......+      ..+|.++++...+..... .-.+.++.+.+.   +  .++ -+|+|+.+
T Consensus       112 ~d~IiiD~~~~~-----~~~~~~~l------~~aD~viiv~~~~~~s~~-~~~~~~~~~~~~---~--~~~~giv~N~~~  174 (237)
T d1g3qa_         112 FDFILIDCPAGL-----QLDAMSAM------LSGEEALLVTNPEISCLT-DTMKVGIVLKKA---G--LAILGFVLNRYG  174 (237)
T ss_dssp             CSEEEEECCSSS-----SHHHHHHH------TTCSEEEEEECSCHHHHH-HHHHHHHHHHHT---T--CEEEEEEEEEET
T ss_pred             CCEEEEcccccc-----cccchhhh------hhhhcccccccccceecc-hhhHHHHHHhhh---h--hhhhhhhhcccc
Confidence            358999999863     22222222      378999999666543221 223334333332   1  343 38999997


Q ss_pred             CC
Q 026113          166 LS  167 (243)
Q Consensus       166 ~~  167 (243)
                      ..
T Consensus       175 ~~  176 (237)
T d1g3qa_         175 RS  176 (237)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.50  E-value=0.034  Score=40.33  Aligned_cols=24  Identities=33%  Similarity=0.619  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..=+++.|++|+||||+.-.+...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            456899999999999998777744

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.49  E-value=0.019  Score=45.38  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=16.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ++.-|.+.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34469999999999999998765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.023  Score=43.06  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      .++.|.-|||||||+|.++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            578899999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.4  Score=36.96  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--+.+.|++|+|||++.-.+...
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHH
Confidence            346688899999999998666643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.041  Score=41.67  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      |--|++=|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            56799999999999999998863

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.1  Score=39.63  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=18.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      +--+++.|++|+|||+++..+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHH
Confidence            3458899999999999988765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.21  E-value=0.077  Score=39.78  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~~   63 (243)
                      +.+.|++|+|||-|++++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999987553

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.039  Score=41.05  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      =|++-|..||||||+++.|.
T Consensus         4 fIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999988876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.86  E-value=0.6  Score=36.02  Aligned_cols=24  Identities=17%  Similarity=0.237  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--+.+.|++++|||++...+...
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHH
Confidence            346678899999999998777644

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.044  Score=40.99  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      .=|++-|..||||||++..|.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            347888999999999888765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.54  E-value=0.046  Score=41.01  Aligned_cols=25  Identities=16%  Similarity=0.098  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGEK   63 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~~   63 (243)
                      .--+++.|++|+|||+++..++-..
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3467888999999999998877543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=0.57  Score=35.31  Aligned_cols=20  Identities=20%  Similarity=0.325  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -+++.|+..+|||+++.++.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHH
Confidence            36899999999999987754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.30  E-value=0.063  Score=40.62  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026113           41 TILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~llg   61 (243)
                      .|.+.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.14  E-value=0.048  Score=45.07  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      -.++++|.||+|||++++.++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            459999999999999887766

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.04  E-value=0.057  Score=40.84  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--+++.|++|+|||++...++..
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            346788899999999998877643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.69  E-value=0.067  Score=42.69  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=18.4

Q ss_pred             Cce-EEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTL-TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~-~IllvG~~g~GKSSlin~ll   60 (243)
                      +|. .++++|++|+|||.++..|.
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHH
Confidence            444 67888999999998877655

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.48  E-value=2  Score=31.90  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -+++.|+..+|||+++.++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            37899999999999887754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.26  E-value=0.057  Score=43.50  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .-++|.+=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3589999999999999999998754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.20  E-value=0.094  Score=42.18  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           38 NTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      ..++|.+=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.07  E-value=0.13  Score=38.15  Aligned_cols=26  Identities=23%  Similarity=0.138  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .+.=-+++.|++++|||.++++|++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHH
Confidence            35578999999999999999887743

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.02  E-value=0.083  Score=40.78  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=16.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+ +++.|.+|+|||+++..+.
T Consensus        36 ~l-~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          36 EV-IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CE-EEEECSTTSSHHHHHHHHH
T ss_pred             eE-EEEEeCCCCCHHHHHHHHH
Confidence            34 6788999999999875554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.83  E-value=0.084  Score=39.48  Aligned_cols=22  Identities=18%  Similarity=0.107  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026113           40 LTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~llg   61 (243)
                      --++|.|++|+|||++...++-
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4668889999999999877763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.80  E-value=0.084  Score=39.49  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=18.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      ..=|++-|..||||||+++.|.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            3458999999999999998775

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.67  E-value=0.083  Score=42.41  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      -++|.|=|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.57  E-value=0.093  Score=39.50  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--+++.|++|+|||+++..++..
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            456788899999999998777633

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=89.55  E-value=0.048  Score=43.67  Aligned_cols=21  Identities=38%  Similarity=0.639  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      -.++++|.+|+|||+++.++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            379999999999999999875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.54  E-value=0.085  Score=42.19  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026113           42 ILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        42 IllvG~~g~GKSSlin~llg~   62 (243)
                      +++.|++|+|||.++.++.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998865

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=0.11  Score=39.19  Aligned_cols=24  Identities=13%  Similarity=0.109  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .--+++.|.+|+|||++.-.++..
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            347789999999999999887743

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.01  E-value=0.71  Score=34.77  Aligned_cols=44  Identities=11%  Similarity=0.007  Sum_probs=25.5

Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHH-HHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAI-TDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l-~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.|.+++|+.+....+..   ..++.+ ......  ..+.+||+||+|+.
T Consensus        10 NiD~~~iV~s~~~P~~~~---~~idR~Lv~a~~~--~i~pvIvlnK~DL~   54 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFST---ALLDRFLVLVEAN--DIQPIICITKMDLI   54 (231)
T ss_dssp             CCCEEEEEEESTTTTCCH---HHHHHHHHHHHTT--TCEEEEEEECGGGC
T ss_pred             ccCEEEEEEECCCCCCCH---HHHHHHHHHHHHc--CCCEEEEEeccccc
Confidence            678888887664333322   122222 222222  25889999999996

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.45  E-value=0.12  Score=38.28  Aligned_cols=22  Identities=27%  Similarity=0.373  Sum_probs=17.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 026113           39 TLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .--+++.|++|+|||+|...++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            4566788999999999876554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=0.16  Score=38.87  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026113           41 TILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~ll   60 (243)
                      -.++.|.+|+|||+|+-.|.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35689999999999886654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.80  E-value=0.18  Score=38.58  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=35.9

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113           87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  166 (243)
Q Consensus        87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~  166 (243)
                      ..+.++|||+-........    .+.    ..-+|.++++...+...+ ....++++.+.........+..-+|+|+.+.
T Consensus       116 ~D~viiD~p~~~~~~~~~~----~~~----~~~ad~vliv~~~~~~sl-~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~  186 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAM----PIR----EGKAQEIYIVASGEMMAL-YAANNISKGIQKYAKSGGVRLGGIICNSRKV  186 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTH----HHH----TTSCCEEEEEECSSHHHH-HHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred             CCEEEeccCCccchhHHHH----HHH----hhccCceeeccchhhhHH-HHHHHHHHHHHhhccccceeccceEEeeecC
Confidence            3588999987543322221    111    135788888866553222 1223444445443221111224478898875


Q ss_pred             C
Q 026113          167 S  167 (243)
Q Consensus       167 ~  167 (243)
                      .
T Consensus       187 ~  187 (269)
T d1cp2a_         187 A  187 (269)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.57  E-value=0.61  Score=35.97  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=18.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 026113           39 TLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~llg   61 (243)
                      .--+.+.|++|+|||++.-.+..
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHH
Confidence            45668889999999999766653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.79  E-value=0.77  Score=34.39  Aligned_cols=45  Identities=11%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113          119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  167 (243)
Q Consensus       119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~  167 (243)
                      +.|.+++|+.++...+...   .++.+.-... ....+.++|+||+|+.
T Consensus        10 NiD~vliV~s~~~P~~~~~---~ldR~Lv~a~-~~~i~pvIvlnK~DL~   54 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTY---IIDKFLVLAE-KNELETVMVINKMDLY   54 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHH---HHHHHHHHHH-HTTCEEEEEECCGGGC
T ss_pred             cCCEEEEEEeCCCCCCCHH---HHHHHHHHHH-HcCCCEEEEEeCcccC
Confidence            6788888877654333322   2222111110 1125889999999986

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.73  E-value=0.15  Score=39.63  Aligned_cols=16  Identities=31%  Similarity=0.603  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCcHHHHH
Q 026113           41 TILVMGKGGVGKSSTV   56 (243)
Q Consensus        41 ~IllvG~~g~GKSSli   56 (243)
                      .++|+|.+|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3688899999999864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.32  E-value=0.34  Score=37.43  Aligned_cols=58  Identities=10%  Similarity=-0.004  Sum_probs=33.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113           37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   97 (243)
Q Consensus        37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~   97 (243)
                      .+.--+.+.|.+++|||+++++|...- .............  ......|..+.++|=|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~~~~~~~f--~l~~l~~k~~~~~~e~~~  159 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCVNWTNENF--PFNDCVDKMVIWWEEGKM  159 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEECCTTCSSC--TTGGGSSCSEEEECSCCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhccccCCCc--cccccCCCEEEEEeCCCc
Confidence            456788899999999999998877431 0111110000000  011245677888887754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.12  E-value=0.19  Score=39.38  Aligned_cols=16  Identities=31%  Similarity=0.682  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 026113           41 TILVMGKGGVGKSSTV   56 (243)
Q Consensus        41 ~IllvG~~g~GKSSli   56 (243)
                      .++|.|.+|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3788899999999864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.87  E-value=0.22  Score=33.84  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026113           40 LTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~~g~GKSSlin~ll   60 (243)
                      -..+|.++||+|||.++-.++
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            345789999999998775444

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.10  E-value=0.56  Score=35.77  Aligned_cols=21  Identities=48%  Similarity=0.800  Sum_probs=15.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~l   59 (243)
                      .--|++.|+.|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            344556699999999975444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=0.44  Score=36.61  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=17.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 026113           38 NTLTILVMGKGGVGKSSTVNSII   60 (243)
Q Consensus        38 ~~~~IllvG~~g~GKSSlin~ll   60 (243)
                      .+--|++.|+.|+||||+.-++.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHH
Confidence            35577889999999999654443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=0.38  Score=37.61  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=26.5

Q ss_pred             HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113           28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE   62 (243)
Q Consensus        28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~   62 (243)
                      .++.+.+.+ +.-|++++|.+|+|||+|+..+...
T Consensus        33 ~ID~l~Pig-rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          33 VLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHHSCCB-TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeeccccc-CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            555566554 4679999999999999998777643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.04  E-value=0.4  Score=37.07  Aligned_cols=19  Identities=42%  Similarity=0.826  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 026113           41 TILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~l   59 (243)
                      +|++-|+.|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5788899999999975443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.54  E-value=3.2  Score=31.80  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=17.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 026113           39 TLTILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        39 ~~~IllvG~~g~GKSSlin~l   59 (243)
                      .-|++++|.+|+|||+|+-.+
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHH
T ss_pred             CceEeeccCCCCChHHHHHHH
Confidence            458999999999999987543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=0.46  Score=38.31  Aligned_cols=19  Identities=32%  Similarity=0.578  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 026113           41 TILVMGKGGVGKSSTVNSI   59 (243)
Q Consensus        41 ~IllvG~~g~GKSSlin~l   59 (243)
                      -.++.|.+|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4677899999999987543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.70  E-value=0.97  Score=32.96  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=26.5

Q ss_pred             HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113           27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG   61 (243)
Q Consensus        27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg   61 (243)
                      +.++++.+.+ ....+++-|++|+||++++..+..
T Consensus         4 ~~l~~~i~~~-~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2           4 ETLKRIIEKS-EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             HHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            3455555544 578999999999999999887774

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.67  E-value=0.5  Score=34.35  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=16.7

Q ss_pred             eEEEEEcC-CCCcHHHHHHHHh
Q 026113           40 LTILVMGK-GGVGKSSTVNSII   60 (243)
Q Consensus        40 ~~IllvG~-~g~GKSSlin~ll   60 (243)
                      -|+.+.|. +|+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            47889999 5999999765554